ID:

dsi_10393

 Coordinate:

3l:16317871-16318020 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-42.5 -42.1

Flybase annnotation

exon [3l_16317669_16317870_+]; CDS [3l_16317669_16317870_+]; intron [3l_16317871_16320455_+]

No Repeatable elements found

mature
  1. 2r:9592100-9592114 +
  2. 3l:9084470-9084484 -
  3. dsi_10393  3l:16317951-16317965 +
star

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAATAGTCGATCAATCCAATGGCGATGTCACGGCGGACAGCTATCATCAGGTGAGCGGAGAATTCAATCAAATCGATAATGGTAGACATCCGATTCAGAATCAGAATGAGTCGGTTCGTTTGGCATCTCAGTTTGATTGGAAGTTATGCAAAGAGTTCAAGATCTCCAGTCGACTAGCTGAGGTAATCGACTGCAAAATATGTAGGCAACTGGCAATTGATGCACTCCGATGGCTATTAGTTACACAGCT
**************************************************....(((.....(((((((((((.((..(((.(((((..((((((((.........))))))))...))))).))).)).))))))))))).....)))...(((........)))(((((((.((.......)).))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR1275483
Male prepupae		 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................GTTTGATTGGAAGTT......................................................................................................... 15 0 3 0.33 1 1 0 0 0 0 0
..................................................................................................................................................................TCTACAGTCGACGATCTGA..................................................................... 19 3 16 0.31 5 0 5 0 0 0 0
...............CCAAACGCGATGTTACGGCG....................................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 1 0 0 0
.......................................................................................................................................................................................................................AGCGATGCACTCCGAAGGCT............... 20 3 7 0.14 1 0 0 0 0 1 0
.......................................................................................................................................................AGAGTTCTAGTTCTACAGTC............................................................................... 20 3 8 0.13 1 0 0 0 1 0 0
............................................................................................................................................................TCAAGTTCTACAGTCGACG........................................................................... 19 3 10 0.10 1 0 0 0 1 0 0
.........................................................................................................AAGCGTCGGTTCGCTTGGC.............................................................................................................................. 19 3 17 0.06 1 1 0 0 0 0 0
..........................................................................................................TGAGTCGGGTTGTTTGG............................................................................................................................... 17 2 17 0.06 1 0 0 1 0 0 0
...............................................................................TGGTAGACATCGCATT........................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1
.........................................................................................................................................................................TCGACGAGCTGAGGT.................................................................. 15 1 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

TTTATCAGCTAGTTAGGTTACCGCTACAGTGCCGCCTGTCGATAGTAGTCCACTCGCCTCTTAAGTTAGTTTAGCTATTACCATCTGTAGGCTAAGTCTTAGTCTTACTCAGCCAAGCAAACCGTAGAGTCAAACTAACCTTCAATACGTTTCTCAAGTTCTAGAGGTCAGCTGATCGACTCCATTAGCTGACGTTTTATACATCCGTTGACCGTTAACTACGTGAGGCTACCGATAATCAATGTGTCGA
**************************************************....(((.....(((((((((((.((..(((.(((((..((((((((.........))))))))...))))).))).)).))))))))))).....)))...(((........)))(((((((.((.......)).))))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
...................................................................................................TAGTCTTACTCACCC........................................................................................................................................ 15 1 7 0.14 1 1 0 0
....................................................................................................................................................................................................................................CCCCCGATAATGAATGTGT... 19 3 10 0.10 1 0 1 0
.........................................................................................................................................................................AGATGGTTGACTCCATTAG.............................................................. 19 3 12 0.08 1 1 0 0
.............................................................................................................................AGGGTCAAACTAACC.............................................................................................................. 15 1 20 0.05 1 0 0 1

Generated: 04/24/2015 at 04:11 AM