ID:

dsi_10388

 Coordinate:

x:11856483-11856632 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.8 -34.8 -34.6

Flybase annnotation

exon [x_11856129_11857577_+]; CDS [x_11856129_11857577_+]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+

Sense Strand Reads

##########################################################################################################################################################################################################################################################
CGGCAGCGACGCCACAAGCAGCATCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAGCACAAATAAACGACAACAAGCTACCAGCAGCAGCAACAATCGCAGCAGCAGCAACCAAACAGCAGCAGCAGCGGCAGCAACAAAAGCTGCAGCAACAGCAACAGTACCTGCTGTCCCTAATCAATTGCTAAGTTGTAGAAAGTCTAACAGCCAGAATAGTCCATACTTAGCTACGCCAAAAAC
**************************************************((..(((((((.......................)))))))..))...(((((....(((.((.((.((.........)).)).)).)))(((((.......)))))((..((((((........))))))..))......)))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 O002
Head
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
................AGCAGCATCGGCAAAGGCAT...................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................GCAACCAAACAGCAGCAG................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................TTGCTAAGTTGTAGAAAGTCT...................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CAGCCAGAATTGTCCGTAC................. 19 2 2 0.50 1 0 0 1 0 0 0 0 0
..............TAAGCAGCATGGGCATAGGCA....................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................GAGTCTAACAGCCCGGATAG........................ 20 3 4 0.25 1 0 0 0 1 0 0 0 0
....................................................................................AAGCTACAAGCAGCAGC..................................................................................................................................................... 17 1 5 0.20 1 0 0 0 1 0 0 0 0
..........GTCACAAGCAGCATCGGAAT............................................................................................................................................................................................................................ 20 3 10 0.20 2 0 0 0 0 0 2 0 0
................TGCAGGATCGGCAAAGGC........................................................................................................................................................................................................................ 18 2 10 0.10 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................................CCTAATAGATTGCTAAG................................................... 17 2 15 0.07 1 0 0 0 0 0 0 1 0
...................................................CAAGTAGCTTTTCCA........................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCCGTCGCTGCGGTGTTCGTCGTAGCCGTTTCCGTAAGTTAAACTTACTACATTCATCGAAAAGGTCGTGTTTATTTGCTGTTGTTCGATGGTCGTCGTCGTTGTTAGCGTCGTCGTCGTTGGTTTGTCGTCGTCGTCGCCGTCGTTGTTTTCGACGTCGTTGTCGTTGTCATGGACGACAGGGATTAGTTAACGATTCAACATCTTTCAGATTGTCGGTCTTATCAGGTATGAATCGATGCGGTTTTTG
**************************************************((..(((((((.......................)))))))..))...(((((....(((.((.((.((.........)).)).)).)))(((((.......)))))((..((((((........))))))..))......)))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR1275487
Male larvae		 GSM343915
embryo
 SRR902008
ovaries
 SRR1275483
Male prepupae
...GTCGCTGCGGTGTTC........................................................................................................................................................................................................................................ 15 0 1 33.00 33 16 14 3 0 0 0 0 0 0 0 0 0 0
..AGTCGCTGCGGTGTTC........................................................................................................................................................................................................................................ 16 1 3 32.00 96 56 29 7 0 0 3 0 1 0 0 0 0 0
..AGTCGCTGCGGTGTTCCT...................................................................................................................................................................................................................................... 18 2 4 9.75 39 4 1 5 11 14 1 2 0 1 0 0 0 0
.AAGTCGCTGCGGTGTTC........................................................................................................................................................................................................................................ 17 2 17 2.82 48 28 10 7 0 0 2 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................CAGGTATGTATCGATG......... 16 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGTATGAATCGATGGG....... 17 1 2 1.50 3 0 0 1 0 0 2 0 0 0 0 0 0 0
..GGTCGCTGCGGTGTTCCT...................................................................................................................................................................................................................................... 18 2 11 1.09 12 0 0 0 10 2 0 0 0 0 0 0 0 0
..............................................................AGGTCGTGTTTATTTGCTGTT....................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCGGTCTTATCAGGTATGAA............... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
...GTCGCTGCGGTGTTCTGCG.................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CAGGTATGCATCGATGGG....... 18 2 2 1.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CAGGTATGTATCGATGGG....... 18 2 5 1.00 5 0 0 1 2 2 0 0 0 0 0 0 0 0
...........CGAGTTCGTCGGAGCCGTTTCC......................................................................................................................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...GTCGCTGCGGTGTTCC....................................................................................................................................................................................................................................... 16 1 6 1.00 6 3 2 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGTATGAATCGATGG........ 16 1 4 0.75 3 0 0 0 0 0 2 0 1 0 0 0 0 0
..AGTCGCTGCGGTGTTCC....................................................................................................................................................................................................................................... 17 2 13 0.69 9 6 0 3 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGTATGAATCGATGGGA...... 18 2 3 0.67 2 0 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CAGGTATGAATCGATGGG....... 18 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGTATGCATCGATGGG....... 17 2 4 0.50 2 0 0 0 0 0 1 0 0 0 1 0 0 0
....TCGCTGCGGTGTTCCT...................................................................................................................................................................................................................................... 16 1 10 0.40 4 0 2 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CAGGCATGTATCGATGGG....... 18 3 20 0.35 7 0 1 4 0 2 0 0 0 0 0 0 0 0
...GTCGCTGCGGTGTTCCT...................................................................................................................................................................................................................................... 17 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGCATGAATCGATGGG....... 17 2 6 0.33 2 0 1 1 0 0 0 0 0 0 0 0 0 0
...GTCGCTGCGGTGTTCTTG..................................................................................................................................................................................................................................... 18 2 9 0.33 3 0 0 0 0 2 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................GGTATGAATCGATGGG....... 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....TCGCTGCGGTGTTCC....................................................................................................................................................................................................................................... 15 1 17 0.29 5 0 2 2 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................TAAGGTATGAATCGATG......... 17 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................ATAAGGTATGAATCGA........... 16 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.AAGTCGCTGCGGTGTTCCT...................................................................................................................................................................................................................................... 19 3 20 0.20 4 0 1 2 0 0 0 1 0 0 0 0 0 0
.............................................................AAGGTCGTGTATATTT............................................................................................................................................................................. 16 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGGTATGAATCGATGGG....... 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................GCCGTAGTCGGTTTGTCGTCGT.................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CAGGTATGTATCGAT.......... 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TCGTTGTTTTCGAGGTCGTG........................................................................................ 20 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................AGGTATGTATCGATG......... 15 1 12 0.17 2 0 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CAGGCATGTATCGATG......... 16 2 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0 0
..AGTCGCTGCGGTGTTCCTT..................................................................................................................................................................................................................................... 19 3 20 0.15 3 0 0 1 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................AGGCATGAATCGATG......... 15 1 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................GCAGGTATGTATCGATG......... 17 2 14 0.14 2 0 0 1 0 0 1 0 0 0 0 0 0 0
..AGTCGCTGCGGTGTTCTT...................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGGCAGGTATGTATCGATG......... 19 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................CGTCTTCGTTGTTAGAGTCG......................................................................................................................................... 20 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................TCCAAAAGGTCGTGT................................................................................................................................................................................... 15 1 20 0.10 2 0 2 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCAGGCATGTATCGATGGG....... 19 3 10 0.10 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................AAGGTCGTGTATATT.............................................................................................................................................................................. 15 1 13 0.08 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CAGGTATGTATCGATGG........ 17 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGTATTAATCGATG......... 15 1 13 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TCATCGTGGGTCTGTCGTCG..................................................................................................................... 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................ACGTGGTTGTCGGTGTAATGG........................................................................... 21 3 15 0.07 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..AGTCGCTGCGGTGTTCT....................................................................................................................................................................................................................................... 17 2 17 0.06 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................TGGCCGTAGTCGTTGTTAGA............................................................................................................................................. 20 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................TGTTGTCATGGATGAC...................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGATGTTGGATGGTC............................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TCAGGCATGTATCGAT.......... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGGTATGCATCGATGGGT...... 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....TCGCTGCAATGTTCGT...................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....TCGCTGCGGTGTTCTTG..................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:11856433-11856682 + dsi_10388 CGGCAGCG---------------------------ACGC--CACAAGCAGCA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAGCACAAATAAACGACAACAAGCTACCAGC------------------------------AGCAGCAAC----------------------------AA---------------TCGCAGCAGCAGCAACCAAA-----------------------------CAGCAGCAGCAGCGGCAGCAACA---------------AAAGCTGCAGCAA---------CA----------------------------GCAACA---------------GTACCTGCTGTCCCTAATCAATTGCTAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGTC--CATA-CTTAGCTACGCCAAAAAC
droSec2 scaffold_21:254649-254895 + CGGCAGCG---------------------------ACGC--CACCAGCAGCA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAGCACAAATAAACGAC---AAGCTACCAGC------------------------------AGCAGCAAC----------------------------AA---------------TCGCAGCAGCAGCAACCAAA-----------------------------CAGCAGCAGCAGCGGCAGCAACA---------------AAAGCTGCAGCAA---------CA----------------------------GCAACA---------------GTACCTGCTGTCCCTAATCAATTGCTAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGTC--CATA-CTTAGCCACGCCAAAAAC
dm3 chrX:12500137-12500386 + CGGCAGCG---------------------------ACGC--CACCAGCAGCA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAGCACAAATAAACGACATCAAGCTACCAGC------------------------------AGCAGCAAC----------------------------AA---------------TCGCAGCAGCAGCAACCAAG-----------------------------CAGCAGCAGCAGCAGCAGCAACA---------------AAAGCTGCAGCAA---------TA----------------------------GCAACA---------------GTACCTGCTGCCCCTAATCAATTGCTAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGTC--CATA-CTTAGCCACGCCAAAAAC
droEre2 scaffold_4690:14359044-14359305 - CGGCGGCAGCG------------------------GCGT--CACCAGCAACA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACACAAATAAACGACATCAAGCTACCAGC------------------------------AGCAACAACAACAGCAGCAAC----------------AA---------------TCGCAGCAGCAGCAACCAAA-----------------------------CAGCAGCAGCAGCAACAGCAACA---------------AAAGCTG---CAA---------CA----------------------------GCAACA---------------GTACCTGCTGTCCCTAATCAATTACTAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGCC--CATA-CTTAGCCACGCCAAAAAC
droYak3 X:6776350-6776629 + CCGCATCG---------------------------ACGA--CACCAGCAGCA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACACAAATAAACGACATCAAGCTACCAGC------------------------------AGCACCAACAGCAGCAGCAGCAGCAGCAGCAG----CAA---------------TCGCAGCAGCAGCAACCAAA-----------------------------CAGCAGTAGC------AGCAACA---------------AAAGCTGCAGCAG---------CA-------------------------------GCAGCAGCAAGAGCAACAATACCTGCTGTCCCTAATCAATTACTAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGCC--CATA-CTTAGCCACGCCCAAAAC
droEug1 scf7180000409110:885307-885583 + TGGCAACAACAGGAGGAGTA---------------GCAA--CAGCAGCAGGA---------------ACGACGACATCGACAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACACAAATAAACGACATCAAGCTACCAGC------------------------------AACAGCAGCAAC-------------------------AA---------------TCGCATCAGCAACAA---AA-----------------------------CAGCAGCATCAGTAGCAGCAACA------------------TCTACATCAACAGCAACAGTAGCA----------------------------ACC---------------GTAGCTGCTCATTCTAAGCAATTACTAAGTTGTAGAAAGTCTAAC---AGCCAAAACAGCT--CTTA-CTTAGCTACGCCAAAAAC
droBia1 scf7180000298389:56520-56778 + CAGCAGCAGCAGCAGGAGCG---------------ACGA--CAGCAGCAACA---------------TCG------GCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTATTCCAACACAAATAAACGACATCAAGCTACCAGC------------------------------AACAGCAGCAGC-------------------------AA---------------TCGCAGCAGCAGCAA---AG-----------------------------CAACAGCA---GC---AGCAACAGCAGTC---------------GCAACAG---------CA----------------------------ACCACT---------------GTCGCTGCTCTTCCTAACCAAGCACTAAGTTGTAGAAAGCCTAAC---AGCCAAAATAGCC--CCTA-CTTAGCCACGCCCAAAAC
droTak1 scf7180000415659:10615-10867 - CAGCAGCAGCAGCAGCAGCAG-----CAAC----GACGA--CGGCAGCAACA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCCACATACATAAACGACATCAAGCTACCAGC------------------------------AGCAGCAGCAGCAACA----------------------------------------------------ACAAAC-----------------------------CAGCAACAGCAACAGCAGCA------------------GCA---GCA---------ACTTTCACA----------------------------ACA---------------GTAGCTGCTCTTCCTAATCAATTACCAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGAA--CGTA-CTTAGGCACGCCAAAAAC
droEle1 scf7180000491023:172738-172987 + CGACGGCG--------------------------------------ACAACA------------------------TCGGCCAAGGCATTCAATTTGAATGATGTAAGTAGCTATTCCAACATAAATAAACGACACCAAGCTACCAGC------------------------------AACAGCAACAGCAGCAGCAACA-------------------------GCAACAATCGCAGCAGCAACAG---AA-----------------------------CAACAACAACAAC---AGCAACT---------------ACA---GCAGCA---------TTCGCA----------------------------GCA---------------TCAACTGCTCTTCCTAACCAATTACCAAGTTGTAGAAAGTCTAAC---AGCCAAAATAGTC--CTTA-CTTAGCAACGCCAAAAAC
droRho1 scf7180000779985:190122-190374 - CAGCAACG---------------------------ACGA--CAGCGGCAGCA------------------------TCGGCCAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACATAAATAAACGACATCAAGCTACCAGC------------------------------AACAGCAGCAGCAGCACC-------------------AA---------------TCGCCAC------AA---AG--------------------------------CAACAACAAGAGCAGCAACA---------------ACAGCAGCAGCAA---CAACAGCAGCA----------------------------ACA---------------GCAGCTGCTCCATCTAACCAATTACTAAGTTGTAGAAAGTCTAAC---AGCCAAAATAGTC--ACTA-CTTAGCCACGCCAAAAAC
droFic1 scf7180000453882:250061-250364 + CAACAGCAGCAGCAGCAACAG-----CAAC----AACCA--CAGCGGCAACA------------------------CCAACGAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACACAAATAAACGACATCAAGCTACCAGC------------------------------AACAGCAGCATCAGCATCAGCA---GC----------AA---------------TCGCAGCAGCAACAA---AA-----------------------------CAGCAACAGCAGC---AACAACAGCAGCAGCA------GCA---GCA---------ACATATGCAGC-------AACAAAAGCAGCAACAGCAACA---------------GTTGCTGCTATTCCTAATCAATTACTAAGTTGTAGAAAGTCTAAC---AGCCAAAATAGCC--CATG-TTTAGCCACGCCAAAAAC
droKik1 scf7180000302696:371032-371251 - CA-----------------------------------------------TCC------------------------TCCGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACATAAATAAAAGACATCAAGCTACCAGC------------------------------AAAAGCAGCAGCAGCA----------------------------------------------------ACTCAA-----------------------------CAGAAGC---------AGCAACAGCAGCATCA------GCAGCA------------ACAGCCTCA----------------------------GCC---------------TCAGCATTTATTCCTAATCAAATGCCAAGTTGTAGAAAGCCTAAC---CGCCAATGTAGTC--CTTA-CTTAGCCACGCCCACAAC
droAna3 scaffold_13117:3393434-3393662 + CAGGAGCA--------------------------------------ACATCC------------------------TCCACAAAGGCATTCAATTTGAATGATGTAAGTAGTATTTCCAACCCAAAAAAAAGTCAACAAGCCACCAGC------------------------------AGCAGCATCATCAGCAACATCA-------------------------------------GTAGCAACAA---TG-----------------------------CAACATCT---GCAACTGCAACA---TCT---------GCAACTGCAACA---------TCTGCA----------------------------ACT---------------GCAACTGCA------------ACACTAACCAACAAAAAGTCCAAT---TGCCACAACTATC--T-AA-CAC--AAACGCCCAAAAC
droBip1 scf7180000396589:2063061-2063287 - CAGCAGCCGCAGAACCAGCAG-----CAGATAAAGAACATTCTGCAGCAGCA------------------------GCGGCAGATG-----------------------------------AAGAATACGCAGCAACAAGCT--CAGCAACAGCAAATGATT---------------------CAGCAGCAGCAACAAC----------------AA---------------CAGCAGCAGCAGCAAC--AA-----------------------------CAACAGCAGCAGCAACAACAACAGCAGCTGCAGCAACAACA---------------GCAGTTGCAAC-------AACAACAGCAGC------------------AGCAACAACAACAGCAGTT-------------------------------------AC--------------------AGCAACAACA-----
dp5 XL_group1a:3278832-3279087 + CGATGACA---------------------------ACGC--CAGCGCCAGCA------------------------GCAACAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTACTACCATAAATAAACGACACCAAGCTACCAGC------------------------------AACAGCAGCAGCAGCAGCCACA-------------------------GCAATATTTGCAACCGC-----------------------AGCAG---CATAT---------------------CAACT---------------ACACCTGCCGCC---------GCC----------------------------GCAGCA---------------TCAGCAGCCATTCCTAAGCAATTAATTAGTTGTAGAAAATCGAACATCAGTCAAAATAGTTGTCATGTTTTATCAACGCCCAAAAC
droPer2 scaffold_77:230014-230278 - CGATGACA---------------------------ACGC--CAGCGCCAGCA------------------------GCAACAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTACTACCATAAATAAACGACACCAAGCTACCAGC------------------------------AACAGCAGCAACAGCAGCAGCA---GC----------AG---CCACAGCAATATTTGCAACCGC-----------------------AGCAG---CATAT---------------------CAACT---------------ACACTTGCCGCC---------GCC----------------------------GCAGCA---------------TCAGCAGCCATTCCTAAGCAATTAATTAGTTGTAGAAAATCGAACATCAGTCAAAATAGTTGTCATGTTTTATCAACGCCCAAAAC
droWil2 scf2_1100000005648:581-827 - TTGCAGCA---------------------------ACAA--CAGCAACAGCAGCAACAATGGCAGCAACAACA---ACAGCAA-------------------------CAACAACTGCAGCAGCAAC----AACAACA-----GCAGCAACAACAACTGCAGCAGCAACAATTGCAGCAACAACAACAACAGCAGCAACA------ACAACAGC-AGCAGCAACAACAGCA--------------------TCAGCAACAGCAACA---G--------------------------------------------------CA---GCA---------ACGAATGCAAC-------AGCAACAGCAAC----------------------------------------------------AGCAGCAACAATTGCAGC---AACAACAACA-----------ACAGCAACAACAACAAC
droVir3 scaffold_12928:1076513-1076794 + CAATAT-AGAGGAATGTACAG-----CG-------ACAA--CAACGGCAACC------------------------ACAACGAAGGCATTTAATTTGAATGATGTAAGTAGCATTATAGCCATAAATAAACATCATAATGCTACCAGC------------------------------AACAGCGGCAGCAGCTGCAGT----------------AA---CCACAGCAACAACAGCAGCAGC-------------------------------------------------AGC---AGCAACAGCAGCA------------GCAGCAGCA------ACAGCAGCAGC-------AGCAAAAACAATTAT-GCAAAA---------------TTAACAGCTATCGCTAGTCGCGTGAATAGTTTTAAAAAGTGCAAC---AATTTAATTAAT------------GCTGTACCCAAAAC
droMoj3 scaffold_6328:2055275-2055538 + CAACAACAACCACAACAACAATATTGCGGA----AATGA--GTGCAACAACA------------------------ACAGCGAAGCCATTTAATTTGAATGATGTAAGTAGCATTATAGCCATAAATAAAC---ATAATGCTACCAGC------------------------------AACAGCATCAGTAGAAGCAACA-------------------------------------------GCA-----GCAGCAACAGCAGCA---GCAGCAATT--------------------------------------------------------------G-TGCAACAGCAACCAG-CAAA---------GCCACA---------------TTAACAACAATTGCTAGTCGCGTGAATAGTTTTCAAAATAGCAAC---AGCAA---TTTGA--TAA----ATGTTGTGCCCAAAAC
droGri2 scaffold_14853:7479030-7479302 - CAACAACAT----GCCAGCA---------------GAAT--G---TTTAGCA------------------------GCGACAAAGGCATTTAATTTGAATGATGTAAGTAGCATTGTAAACTTAAATAAACGTCAAAATGCTACCAGC------------------------------ACCAGTAACAGCAGTAACAACA---AC----------AA---TCACAACAAAACCAGCAGCAGC--------------------AGCA---GCAGCAATTATGCAGCAGCAGCAGCAGCAACAACA------------------------------------AGCGCT----------------------------ACA---------------TTAACAGCAATTGCTAAACGCGTGAATAGTTTTAATAAGTGCAAC---AGCAACAATTTGT--CAAA----TGCTGTACCAAAAAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGGCAGCG---------------------------ACGC--CACAAGCAGCA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAGCACAAATAAACGACAACAAGCTACCAGC------------------------------AGCAGCAAC----------------------------AA---------------TCGCAGCAGCAGCAACCAAA-----------------------------CAGCAGCAGCAGCGGCAGCAACA---------------AAAGCTGCAGCAA---------CA----------------------------GCAACA---------------GTACCTGCTGTCCCTAATCAATTGCTAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGTC--CATA-CTTAGCTACGCCAAAAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................AGCAGCA------------------------TCGGCAAAGGCAT.....................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...................................................................................................................................................................................................................................................GCAACCAAA-----------------------------CAGCAGCAG............................................................................................................................................................................................1811.00100000100000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTAAGTTGTAGAAAGTCT............................................2111.00110000000000000000
droSec2
CGGCAGCG---------------------------ACGC--CACCAGCAGCA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAGCACAAATAAACGAC---AAGCTACCAGC------------------------------AGCAGCAAC----------------------------AA---------------TCGCAGCAGCAGCAACCAAA-----------------------------CAGCAGCAGCAGCGGCAGCAACA---------------AAAGCTGCAGCAA---------CA----------------------------GCAACA---------------GTACCTGCTGTCCCTAATCAATTGCTAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGTC--CATA-CTTAGCCACGCCAAAAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCTAAGTTGTAGAAA................................................1911.0010010
dm3
CGGCAGCG---------------------------ACGC--CACCAGCAGCA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAGCACAAATAAACGACATCAAGCTACCAGC------------------------------AGCAGCAAC----------------------------AA---------------TCGCAGCAGCAGCAACCAAG-----------------------------CAGCAGCAGCAGCAGCAGCAACA---------------AAAGCTGCAGCAA---------TA----------------------------GCAACA---------------GTACCTGCTGCCCCTAATCAATTGCTAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGTC--CATA-CTTAGCCACGCCAAAAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................................................................................................................................CTACCAGC------------------------------AGCAGCAAC----------------------------AA---------------TCGCA.................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AGCAA---------TA----------------------------GCAACA---------------GTACCTG...............................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCTAAGTTGTAGAAA................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
....................................CGC--CACCAGCAGCA------------------------TCGGCAA...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAGAATAGTC--CATA-CTTAGCCAC.........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.....................................................................................................................................................................................................................................................AACCAAG-----------------------------CAGCAGCAGCAG.........................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CAGCAGCA------------------------TCGGCAAAGT........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGTTGTAGAAAGTCTAAC---AGC...................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................ACCAGCAGCA------------------------TCGGCAAAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
...................................................................................................TGATGTAAGTAGCTTTTCCAG......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTGTAGAAAGTCTAA..........................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CGGCAGCG---------------------------ACGC--CACCAGCAGCA------------------------TCGG..............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TCGGCAAAGGCATTCAATTTGAATGATC......................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......G---------------------------ACGC--CACCAGCAGCA------------------------TCGGC.............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TTTGAATGATGTAAGTAGCTTTTCCAGC.....................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................GCAGCAA---------TA----------------------------GCAACA---------------GTAC..................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAAAGTCTAAC---AGCCAGA...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................................................CCAAG-----------------------------CAGCAGCAGCAGCA.......................................................................................................................................................................................19100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCAAC...............................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................AAGCTGCAGCAA---------TA----------------------------GCAAGG---------------T.....................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................CAAG-----------------------------CAGCAGCAGCAGCA.......................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
..........................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCAACA---------------...............................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AAG-----------------------------CAGCAGCAGCAGCAGCA....................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACA---------------AA.............................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAACA---------------A..............................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................AG-----------------------------CAGCAGCAGCAGCAGC.....................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCA.................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGGCGGCAGCG------------------------GCGT--CACCAGCAACA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACACAAATAAACGACATCAAGCTACCAGC------------------------------AGCAACAACAACAGCAGCAAC----------------AA---------------TCGCAGCAGCAGCAACCAAA-----------------------------CAGCAGCAGCAGCAACAGCAACA---------------AAAGCTG---CAA---------CA----------------------------GCAACA---------------GTACCTGCTGTCCCTAATCAATTACTAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGCC--CATA-CTTAGCCACGCCAAAAACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................C----------------AA---------------TCGCAGCAGCAGCAAC......................................................................................................................................................................................................................................1940.2510100000
droYak3
CCGCATCG---------------------------ACGA--CACCAGCAGCA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACACAAATAAACGACATCAAGCTACCAGC------------------------------AGCACCAACAGCAGCAGCAGCAGCAGCAGCAG----CAA---------------TCGCAGCAGCAGCAACCAAA-----------------------------CAGCAGTAGC------AGCAACA---------------AAAGCTGCAGCAG---------CA-------------------------------GCAGCAGCAAGAGCAACAATACCTGCTGTCCCTAATCAATTACTAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGCC--CATA-CTTAGCCACGCCCAAAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................GC------------------------------AGCACCAACAGCAGCAGCAGC.......................................................................................................................................................................................................................................................................................2350.20101000000000
............................................................................................................................................................................................................CAGCAG----CAA---------------TCGCAGCAG.............................................................................................................................................................................................................................................1860.17101000000000
..........................................................................................................................................................................................................................................................................................................................................AG---------CA-------------------------------GCAGCAGCAAGAGC..........................................................................................1870.14100000100000
....................................................................................................................................................................................CACCAACAGCAGCAGCAGCAGCAGC.................................................................................................................................................................................................................................................................................2590.11100100000000
.....................................................................................................................................................................................ACCAACAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................19200.05101000000000
.......................................................................................................................................................................................CAACAGCAGCAGCAGCAGCAGCAGCA.............................................................................................................................................................................................................................................................................26200.05101000000000
................................................................................................................................................................................................CAGCAGCAGCAGCAGCAG----CA......................................................................................................................................................................................................................................................................20200.05101000000000
......................................................................................................................................................................................................................................................................................................................................CAGCAG---------CA-------------------------------GCAGCAGCAAG.............................................................................................19200.05101000000000
........................................................................................................................................................................................AACAGCAGCAGCAGCAGCA...................................................................................................................................................................................................................................................................................19200.05100010000000
droEug1
TGGCAACAACAGGAGGAGTA---------------GCAA--CAGCAGCAGGA---------------ACGACGACATCGACAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACACAAATAAACGACATCAAGCTACCAGC------------------------------AACAGCAGCAAC-------------------------AA---------------TCGCATCAGCAACAA---AA-----------------------------CAGCAGCATCAGTAGCAGCAACA------------------TCTACATCAACAGCAACAGTAGCA----------------------------ACC---------------GTAGCTGCTCATTCTAAGCAATTACTAAGTTGTAGAAAGTCTAAC---AGCCAAAACAGCT--CTTA-CTTAGCTACGCCAAAAACSizeHit CountTotal NormTotal
No Reads
droBia1
CAGCAGCAGCAGCAGGAGCG---------------ACGA--CAGCAGCAACA---------------TCG------GCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTATTCCAACACAAATAAACGACATCAAGCTACCAGC------------------------------AACAGCAGCAGC-------------------------AA---------------TCGCAGCAGCAGCAA---AG-----------------------------CAACAGCA---GC---AGCAACAGCAGTC---------------GCAACAG---------CA----------------------------ACCACT---------------GTCGCTGCTCTTCCTAACCAAGCACTAAGTTGTAGAAAGCCTAAC---AGCCAAAATAGCC--CCTA-CTTAGCCACGCCCAAAACSizeHit CountTotal NormTotal
No Reads
droTak1
CAGCAGCAGCAGCAGCAGCAG-----CAAC----GACGA--CGGCAGCAACA------------------------TCGGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCCACATACATAAACGACATCAAGCTACCAGC------------------------------AGCAGCAGCAGCAACA----------------------------------------------------ACAAAC-----------------------------CAGCAACAGCAACAGCAGCA------------------GCA---GCA---------ACTTTCACA----------------------------ACA---------------GTAGCTGCTCTTCCTAATCAATTACCAAGTTGTAGAAAGTCTAAC---AGCCAGAATAGAA--CGTA-CTTAGGCACGCCAAAAACSizeHit CountTotal NormTotal
No Reads
droEle1
CGACGGCG--------------------------------------ACAACA------------------------TCGGCCAAGGCATTCAATTTGAATGATGTAAGTAGCTATTCCAACATAAATAAACGACACCAAGCTACCAGC------------------------------AACAGCAACAGCAGCAGCAACA-------------------------GCAACAATCGCAGCAGCAACAG---AA-----------------------------CAACAACAACAAC---AGCAACT---------------ACA---GCAGCA---------TTCGCA----------------------------GCA---------------TCAACTGCTCTTCCTAACCAATTACCAAGTTGTAGAAAGTCTAAC---AGCCAAAATAGTC--CTTA-CTTAGCAACGCCAAAAACSizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAACG---------------------------ACGA--CAGCGGCAGCA------------------------TCGGCCAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACATAAATAAACGACATCAAGCTACCAGC------------------------------AACAGCAGCAGCAGCACC-------------------AA---------------TCGCCAC------AA---AG--------------------------------CAACAACAAGAGCAGCAACA---------------ACAGCAGCAGCAA---CAACAGCAGCA----------------------------ACA---------------GCAGCTGCTCCATCTAACCAATTACTAAGTTGTAGAAAGTCTAAC---AGCCAAAATAGTC--ACTA-CTTAGCCACGCCAAAAACSizeHit CountTotal NormTotal
No Reads
droFic1
CAACAGCAGCAGCAGCAACAG-----CAAC----AACCA--CAGCGGCAACA------------------------CCAACGAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACACAAATAAACGACATCAAGCTACCAGC------------------------------AACAGCAGCATCAGCATCAGCA---GC----------AA---------------TCGCAGCAGCAACAA---AA-----------------------------CAGCAACAGCAGC---AACAACAGCAGCAGCA------GCA---GCA---------ACATATGCAGC-------AACAAAAGCAGCAACAGCAACA---------------GTTGCTGCTATTCCTAATCAATTACTAAGTTGTAGAAAGTCTAAC---AGCCAAAATAGCC--CATG-TTTAGCCACGCCAAAAACSizeHit CountTotal NormTotal
No Reads
droKik1
CA-----------------------------------------------TCC------------------------TCCGCAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTTCCAACATAAATAAAAGACATCAAGCTACCAGC------------------------------AAAAGCAGCAGCAGCA----------------------------------------------------ACTCAA-----------------------------CAGAAGC---------AGCAACAGCAGCATCA------GCAGCA------------ACAGCCTCA----------------------------GCC---------------TCAGCATTTATTCCTAATCAAATGCCAAGTTGTAGAAAGCCTAAC---CGCCAATGTAGTC--CTTA-CTTAGCCACGCCCACAACSizeHit CountTotal NormTotal
No Reads
droAna3
CAGGAGCA--------------------------------------ACATCC------------------------TCCACAAAGGCATTCAATTTGAATGATGTAAGTAGTATTTCCAACCCAAAAAAAAGTCAACAAGCCACCAGC------------------------------AGCAGCATCATCAGCAACATCA-------------------------------------GTAGCAACAA---TG-----------------------------CAACATCT---GCAACTGCAACA---TCT---------GCAACTGCAACA---------TCTGCA----------------------------ACT---------------GCAACTGCA------------ACACTAACCAACAAAAAGTCCAAT---TGCCACAACTATC--T-AA-CAC--AAACGCCCAAAACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................A---------TCTGCA----------------------------ACT---------------GCAACTGCA------------ACA..............................................................2230.331010000
droBip1
CAGCAGCCGCAGAACCAGCAG-----CAGATAAAGAACATTCTGCAGCAGCA------------------------GCGGCAGATG-----------------------------------AAGAATACGCAGCAACAAGCT--CAGCAACAGCAAATGATT---------------------CAGCAGCAGCAACAAC----------------AA---------------CAGCAGCAGCAGCAAC--AA-----------------------------CAACAGCAGCAGCAACAACAACAGCAGCTGCAGCAACAACA---------------GCAGTTGCAAC-------AACAACAGCAGC------------------AGCAACAACAACAGCAGTT-------------------------------------AC--------------------AGCAACAACA-----SizeHit CountTotal NormTotal
No Reads
dp5
CGATGACA---------------------------ACGC--CAGCGCCAGCA------------------------GCAACAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTACTACCATAAATAAACGACACCAAGCTACCAGC------------------------------AACAGCAGCAGCAGCAGCCACA-------------------------GCAATATTTGCAACCGC-----------------------AGCAG---CATAT---------------------CAACT---------------ACACCTGCCGCC---------GCC----------------------------GCAGCA---------------TCAGCAGCCATTCCTAAGCAATTAATTAGTTGTAGAAAATCGAACATCAGTCAAAATAGTTGTCATGTTTTATCAACGCCCAAAACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................C----------------------------GCAGCA---------------TCAGCAGCCATTCCT.......................................................................2211.0010100000000
.................................................................................................AATGATGTAAGTAGCTTTA..........................................................................................................................................................................................................................................................................................................................................................................1911.0010000010000
..........................................................................................................................................................................................................................................................................GCAG---CATAT---------------------CAACT---------------ACACCTG........................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................CAGCAGCAGCAGCAGCCACA-------------------------GC...........................................................................................................................................................................................................................................................22200.0510001000000
droPer2
CGATGACA---------------------------ACGC--CAGCGCCAGCA------------------------GCAACAAAGGCATTCAATTTGAATGATGTAAGTAGCTTTACTACCATAAATAAACGACACCAAGCTACCAGC------------------------------AACAGCAGCAACAGCAGCAGCA---GC----------AG---CCACAGCAATATTTGCAACCGC-----------------------AGCAG---CATAT---------------------CAACT---------------ACACTTGCCGCC---------GCC----------------------------GCAGCA---------------TCAGCAGCCATTCCTAAGCAATTAATTAGTTGTAGAAAATCGAACATCAGTCAAAATAGTTGTCATGTTTTATCAACGCCCAAAACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TTGCAGCA---------------------------ACAA--CAGCAACAGCAGCAACAATGGCAGCAACAACA---ACAGCAA-------------------------CAACAACTGCAGCAGCAAC----AACAACA-----GCAGCAACAACAACTGCAGCAGCAACAATTGCAGCAACAACAACAACAGCAGCAACA------ACAACAGC-AGCAGCAACAACAGCA--------------------TCAGCAACAGCAACA---G--------------------------------------------------CA---GCA---------ACGAATGCAAC-------AGCAACAGCAAC----------------------------------------------------AGCAGCAACAATTGCAGC---AACAACAACA-----------ACAGCAACAACAACAACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................AACAATGGCAGCAACAACA---ACAG..............................................................................................................................................................................................................................................................................................................................................................................................................23200.7014014000
.......A---------------------------ACAA--CAGCAACAGCAGCAACAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................26200.35707000
.........................................................................................................................................................................AATTGCAGCAACAACAACAACAGC.............................................................................................................................................................................................................................................................................................24100.20202000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGC---AACAACAACA-----------ACAGC............24100.20202000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGC---AACAACAACA-----------ACAGCAACAACA.....2860.17101000
...............................................................................................................................................................................................GCAGCAACA------ACAACAGC-A......................................................................................................................................................................................................................................................................18200.15300030
....AGCA---------------------------ACAA--CAGCAACAGCAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................23200.15303000
......................................................................................................................................................................................................................................................................................................................................................................AACAGCAAC----------------------------------------------------AGCAGCAACA.................................................19200.15300030
......................................................................................................................................................................................................................................................................................................................................CA---------ACGAATGCAAC-------AGCAACAGCAAC----------------------------------------------------...........................................................2580.13101000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGC---AACAACAACA-----------ACAGCAACA........2580.13101000
...........................................................................................................................................................................................................................................................TCAGCAACAGCAACA---G--------------------------------------------------CA---GCA---------ACGAA........................................................................................................................................2690.11100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGC---AACAACAACA-----------ACAG.............23100.10101000
.......A---------------------------ACAA--CAGCAACAGCAGCAACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000
..............................................................................................................................................................................................................ACAACAGC-AGCAGCAACAAC...........................................................................................................................................................................................................................................................20200.10200002
......................................................................................................................................................CAACAACTGCAGCAGCAACAATTGC...............................................................................................................................................................................................................................................................................................................25200.10202000
......................................................AACAATGGCAGCAACAACA---ACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000
......................................................................................................................................................................AACAATTGCAGCAACAACAACAACAGC.............................................................................................................................................................................................................................................................................................27100.10101000
.TGCAGCA---------------------------ACAA--CAGCAACAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................23200.10202000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATTGCAGC---AACAACAACA-----------ACAGC............27100.10101000
....AGCA---------------------------ACAA--CAGCAACAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................20200.10202000
..........................................................................................................................GCAAC----AACAACA-----GCAGCAACA......................................................................................................................................................................................................................................................................................................................................21200.10200020
.........................................................................................................................................................................AATTGCAGCAACAACAACAACAG..............................................................................................................................................................................................................................................................................................23100.10101000
.............................................................................................................................................................................................................................................................AGCAACAGCAACA---G--------------------------------------------------CA---GCA---------ACG..........................................................................................................................................22110.09100010
............................................................................................................................................................................................................................CAACAACAGCA--------------------TCAGCAACAGCAACA---G--------------------------------------------------..............................................................................................................................................................27120.08101000
...............................................................................................................................................................................................................................CAACAGCA--------------------TCAGCAACAGCAACA---G--------------------------------------------------CA---G........................................................................................................................................................27120.08100010
...............................................................................................................................................................................................................CAACAGC-AGCAGCAACAACAGCA--------------------TCAG...............................................................................................................................................................................................................................27120.08100010
.........................................................................................................................................................................AATTGCAGCAACAACAACA..................................................................................................................................................................................................................................................................................................19130.08100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCAGC---AACAACAACA-----------.................19130.08100010
............................................................................................................................................................................................................................CAACAACAGCA--------------------TCAGCAACAGC........................................................................................................................................................................................................................22140.07100010
...................................................................................................................TGCAGCAGCAAC----AACAACA-----GCAGCAACA......................................................................................................................................................................................................................................................................................................................................28140.07100010
.............................................................................................................AACAACTGCAGCAGCAAC----AACAACA-----...............................................................................................................................................................................................................................................................................................................................................25150.07101000
...................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAAC----------------------------------------------------AGCAGCAACAATT..............................................25160.06100010
......................................................................................................................................................................................................................................................................................................................................................TGCAAC-------AGCAACAGCAAC----------------------------------------------------AGCAGC.....................................................24170.06101000
...................................................................................................................................................................................................................................AGCA--------------------TCAGCAACAGCAACA---G--------------------------------------------------CA---G........................................................................................................................................................23170.06101000
...............................................................................................................................................................................................................................CAACAGCA--------------------TCAGCAACAGC........................................................................................................................................................................................................................19170.06100010
......................................................................................................................................................................................................................................A--------------------TCAGCAACAGCAACA---G--------------------------------------------------CA---GCA---------AC...........................................................................................................................................24190.05101000
...............................................CAGCAGCAACAATGGCAGCAA..........................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
....................................................................................................................................................AACAACAACTGCAGCAGCAAC.....................................................................................................................................................................................................................................................................................................................21200.05101000
.........................................................AATGGCAGCAACAACA---ACAGCAA-------------------------CAAC..............................................................................................................................................................................................................................................................................................................................................................................27200.05101000
.......................................................................................................................................................AACAACTGCAGCAGCAACAATTG................................................................................................................................................................................................................................................................................................................23200.05101000
............................................................GGCAGCAACAACA---ACAGCAA-------------------------CAA...............................................................................................................................................................................................................................................................................................................................................................................23200.05101000
.........................................................AATGGCAGCAACAACA---ACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.......................................................................CA---ACAGCAA-------------------------CAACAACTGCAG......................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.......................................................ACAATGGCAGCAACAACA---ACAG..............................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
..................................................................AACAACA---ACAGCAA-------------------------CAACAACTGCAGC.....................................................................................................................................................................................................................................................................................................................................................................27200.05101000
.................................................................................AA-------------------------CAACAACTGCAGCAGCAAC----...........................................................................................................................................................................................................................................................................................................................................................21200.05101000
........................................................................................................................................................................................................................................................................................................................................................CAAC-------AGCAACAGCAAC----------------------------------------------------AGCAG......................................................21200.05101000
.TGCAGCA---------------------------ACAA--CAGCAACAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000
....................................................................CAACA---ACAGCAA-------------------------CAACAACTGCAGC.....................................................................................................................................................................................................................................................................................................................................................................25200.05101000
...............................................................AGCAACAACA---ACAGCAA-------------------------CAACAACTGCAG......................................................................................................................................................................................................................................................................................................................................................................29200.05101000
............................................................GGCAGCAACAACA---ACAGCAA-------------------------C.................................................................................................................................................................................................................................................................................................................................................................................21200.05101000
...........................................................TGGCAGCAACAACA---ACAGCAA-------------------------CAACAA............................................................................................................................................................................................................................................................................................................................................................................27200.05100010
...................................................AGCAACAATGGCAGCAACAACA---ACA...............................................................................................................................................................................................................................................................................................................................................................................................................25200.05100010
........................................................................A---ACAGCAA-------------------------CAACAACTGCAGCAGCAAC----...........................................................................................................................................................................................................................................................................................................................................................27200.05101000
...................................................................................................................................................................................................CAACA------ACAACAGC-AGCAGC.................................................................................................................................................................................................................................................................19200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATTGCAGC---AACAACAACA-----------G................23200.05101000
............................................................................ACAGCAA-------------------------CAACAACTGCAGCA....................................................................................................................................................................................................................................................................................................................................................................21200.05101000
.......................................................................................................................................................................................................A------ACAACAGC-AGCAGCAACAA............................................................................................................................................................................................................................................................20200.05100010
..............................................................................AGCAA-------------------------CAACAACTGCAGCAGCAAC----A..........................................................................................................................................................................................................................................................................................................................................................25200.05100010
.TGCAGCA---------------------------ACAA--CAGCAACAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.........................................................AATGGCAGCAACAACA---ACAGCAA-------------------------CA................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
....................................CAA--CAGCAACAGCAGCAACAATGG................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
......................................................................................................................................................CAACAACTGCAGCAGCAACAATTGCAGC............................................................................................................................................................................................................................................................................................................28200.05101000
............................................................................................................................................................................................ACAGCAGCAACA------ACAACAGC-A......................................................................................................................................................................................................................................................................21200.05100001
......CA---------------------------ACAA--CAGCAACAGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05100010
...........................................................TGGCAGCAACAACA---ACAGCAA-------------------------CAACAAC...........................................................................................................................................................................................................................................................................................................................................................................28200.05101000
................................................AGCAGCAACAATGGCAGCAACAACA---..................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
TTGCAGCA---------------------------ACAA--CAGCAACAGCAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
.............................................................................................................................................................................................................................................................AGCAACAGCAACA---G--------------------------------------------------CA---GCA---------.............................................................................................................................................19200.05101000
........................................................................A---ACAGCAA-------------------------CAACAACTGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................24200.05101000
......................................................................................................................................................................AACAATTGCAGCAACAACAACAG.................................................................................................................................................................................................................................................................................................23200.05101000
.........................................................................................................................................................................................................................................................................................................................................................................AGCAAC----------------------------------------------------AGCAGCAACAATTG.............................................20200.05101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA-----------ACAGCAACAACAACA..22200.05100010
.....................................................CAACAATGGCAGCAACAACA---ACAG..............................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
TTGCAGCA---------------------------ACAA--CAGCAACAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000
..................................................................AACAACA---ACAGCAA-------------------------CAACAACT..........................................................................................................................................................................................................................................................................................................................................................................22200.05101000
..............................................................................AGCAA-------------------------CAACAACTGCAGCAGCAA................................................................................................................................................................................................................................................................................................................................................................23200.05101000
..........................................AGCAACAGCAGCAACAATGGCAG.............................................................................................................................................................................................................................................................................................................................................................................................................................23200.05101000
..................................................................AACAACA---ACAGCAA-------------------------CAACAACTGC........................................................................................................................................................................................................................................................................................................................................................................24200.05101000
...........................................................TGGCAGCAACAACA---ACAGCAA-------------------------CAA...............................................................................................................................................................................................................................................................................................................................................................................24200.05100010
............................................................................................................................AAC----AACAACA-----GCAGCAACAAC....................................................................................................................................................................................................................................................................................................................................21200.05101000
.......................................................ACAATGGCAGCAACAACA---ACAGCA............................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000
.......................................................................................................................................................AACAACTGCAGCAGCAACAATT.................................................................................................................................................................................................................................................................................................................22200.05101000
.........................................................................................................................................................................................................................................................................................................................................................AAC-------AGCAACAGCAAC----------------------------------------------------AGCAGC.....................................................21200.05100001
droVir3
CAATAT-AGAGGAATGTACAG-----CG-------ACAA--CAACGGCAACC------------------------ACAACGAAGGCATTTAATTTGAATGATGTAAGTAGCATTATAGCCATAAATAAACATCATAATGCTACCAGC------------------------------AACAGCGGCAGCAGCTGCAGT----------------AA---CCACAGCAACAACAGCAGCAGC-------------------------------------------------AGC---AGCAACAGCAGCA------------GCAGCAGCA------ACAGCAGCAGC-------AGCAAAAACAATTAT-GCAAAA---------------TTAACAGCTATCGCTAGTCGCGTGAATAGTTTTAAAAAGTGCAAC---AATTTAATTAAT------------GCTGTACCCAAAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.AATAT-AGAGGAATGTACAG-----CG-------ACAA--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000010000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................AAAA---------------TTAACAGCTATCGCTAGTCGCGT...............................................................2711.001000000000000000001000000000000000000000000000000000000000000000
..................CAG-----CG-------ACAA--CAACGGCAACC------------------------A.................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................CTGCAGT----------------AA---CCACAGCAACA.......................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TAACAGCTATCGCTAGTCGCG................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
..........GGAATGTACAG-----CG-------ACAA--C....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000010000000000000000000000000000000000000000
......................................................................................................TGTAAGTAGCATTATAGCCAT...................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................GCAACAACAGCAGCAGC-------------------------------------------------AGC---A....................................................................................................................................................................................21200.204000000000000010000000000000000010000020000000000000000000000000
......................................................................................................................................................................................................................................AACAGCAGCAGC-------------------------------------------------AGC---AGCAAC...............................................................................................................................................................................21200.153001000000000000001000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................CAGC-------------------------------------------------AGC---AGCAACAGCAGC.........................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ACAACAGCAGCAGC-------------------------------------------------AGC---AGCA.................................................................................................................................................................................21200.102000000000000000000000000000000000002000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AGCA------ACAGCAGCAGC-------AGCA.......................................................................................................................19200.102000000000000000000000000000000000000200000000000000000000000000
.........................................................................................................................................................................................................................................................................................................AGCAACAGCAGCA------------GCAGCA......................................................................................................................................................19200.102000000000000000000000000000000000000200000000000000000000000000
............................................................................................................................................................................................................................................AGCAGC-------------------------------------------------AGC---AGCAACAGCA...........................................................................................................................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................GCAGCAGC-------------------------------------------------AGC---AGCAACAGCA...........................................................................................................................................................................21200.051000000000000000000000000000000001000000000000000000000000000000
...............................................................................................................................................................................................................................................AGC-------------------------------------------------AGC---AGCAACAGCAGCA------------GCAGCAGCA------.............................................................................................................................................28200.051000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................CAGCAACAACAGCAGCAGC-------------------------------------------------A..........................................................................................................................................................................................20200.051000000000000000000000000000010000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................GC---AGCAACAGCAGCA------------GCAGCAGCA------A............................................................................................................................................25200.051000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................CA------------GCAGCAGCA------ACAGCAGCAG...................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................AACAACAGCAGCAGC-------------------------------------------------AGC---AGC..................................................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................GCAACAGCAGCA------------GCAGCAGCA------AC...........................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................AGCAGCAGC-------------------------------------------------AGC---AGCAACAGCAGCA------------G...........................................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................C-------------------------------------------------AGC---AGCAACAGCAGCA------------GCA.........................................................................................................................................................20200.051000000000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................CAGC-------------------------------------------------AGC---AGCAACAGCAGCA------------G...........................................................................................................................................................21200.051000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................CAACAGCAGCA------------GCAGCAGCA------A............................................................................................................................................21200.051000000000000000000000000100000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................GCA------------GCAGCAGCA------ACAGCAGC.....................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AACAACAGCAGCAGC-------------------------------------------------AGC---AGCAA................................................................................................................................................................................23200.051000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................................................................................................................AGCAACAACAGCAGCAGC-------------------------------------------------AGC---A....................................................................................................................................................................................22200.051000000000000000000000000000000000001000000000000000000000000000
.............................................................................................................................................................................................................................................GCAGC-------------------------------------------------AGC---AGCAACAGCAGCA------------............................................................................................................................................................21200.051000000000000000000000000000000000001000000000000000000000000000
............................................................................................................................................................................................................................................................................................................AACAGCAGCA------------GCAGCAGCA------.............................................................................................................................................19200.051000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................CAACAACAGCAGCAGC-------------------------------------------------AGC---AGCAACA..............................................................................................................................................................................26200.051000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................CAACAGCAGCA------------GCAGCAGCA------ACAGC........................................................................................................................................25200.051001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................AGCAACAACAGCAGCAGC-------------------------------------------------AGC---AGC..................................................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AGCAGCA------------GCAGCAGCA------ACAGCAGCAG...................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................C---AGCAACAGCAGCA------------GCAGCAGCA------AC...........................................................................................................................................25200.051000000000000000000000000000000000001000000000000000000000000000
..................................................................................................................................................................................................................................CAACAACAGCAGCAGC-------------------------------------------------AGC---AGCAA................................................................................................................................................................................24200.051000000000000000000000000000000001000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................ACAGCAGCA------------GCAGCAGCA------ACAGCAGC.....................................................................................................................................26200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................ACAGCAACAACAGCAGCAGC-------------------------------------------------A..........................................................................................................................................................................................21200.051000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AGC---AGCAACAGCAGCA------------GCAGCAGC....................................................................................................................................................24200.051001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................CAGCA------ACAGCAGCAGC-------AGCAA......................................................................................................................21200.051000000000000000000000000000000000100000000000000000000000000000
droMoj3
CAACAACAACCACAACAACAATATTGCGGA----AATGA--GTGCAACAACA------------------------ACAGCGAAGCCATTTAATTTGAATGATGTAAGTAGCATTATAGCCATAAATAAAC---ATAATGCTACCAGC------------------------------AACAGCATCAGTAGAAGCAACA-------------------------------------------GCA-----GCAGCAACAGCAGCA---GCAGCAATT--------------------------------------------------------------G-TGCAACAGCAACCAG-CAAA---------GCCACA---------------TTAACAACAATTGCTAGTCGCGTGAATAGTTTTCAAAATAGCAAC---AGCAA---TTTGA--TAA----ATGTTGTGCCCAAAACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................TTAATTTGAATGATGTAAGT.................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................TAACAACAATTGCTAGTCGCGTGA.............................................................2411.001100000
...................AATATTGCGGA----AATGA--GTGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100
.....................................................................................................................................................................................................ACA-------------------------------------------GCA-----GCAGCAACAGCAGC.....................................................................................................................................................................................................................20200.102000020
...............................................................................................................................................................................................................................................................CAACAGCAGCA---GCAGCAAT.........................................................................................................................................................................................................19200.051100000
.....................................................................................................................................................................................................ACA-------------------------------------------GCA-----GCAGCAACAGCAGCA---.................................................................................................................................................................................................................21200.051000010
.................................................................................................................................................................................................AGCAACA-------------------------------------------GCA-----GCAGCAACAG.........................................................................................................................................................................................................................20200.051100000
droGri2
CAACAACAT----GCCAGCA---------------GAAT--G---TTTAGCA------------------------GCGACAAAGGCATTTAATTTGAATGATGTAAGTAGCATTGTAAACTTAAATAAACGTCAAAATGCTACCAGC------------------------------ACCAGTAACAGCAGTAACAACA---AC----------AA---TCACAACAAAACCAGCAGCAGC--------------------AGCA---GCAGCAATTATGCAGCAGCAGCAGCAGCAACAACA------------------------------------AGCGCT----------------------------ACA---------------TTAACAGCAATTGCTAAACGCGTGAATAGTTTTAATAAGTGCAAC---AGCAACAATTTGT--CAAA----TGCTGTACCAAAAACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/18/2015 at 01:49 PM