ID:dsi_10386 |
Coordinate:3l:7692715-7692864 + |
Confidence:Candidate |
Type:Unknown |
[View on UCSC Genome Browser {Cornell Mirror}] |
| Legend: | mature | star | mismatch in read |
|
|
|
|
| -13.17 | -12.94 | -12.57 |
 |
 |
 |
five_prime_UTR [3l_7692865_7692873_+]; CDS [3l_7692874_7693326_+]; exon [3l_7692865_7693326_+]; intron [3l_7692383_7692864_+]
No Repeatable elements found
| --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTAATTGATTTGTGTGTGAGTGTGTGAAAGTGAACTTATGGGTGCGTGAAAAAATGCAATAATCCAAAGGGAAATACCGCTAAAGAGGAAAACATCAACAATGCCAATTTAAAAGAGACCAACGAAAAAAAAAAAAATAGCAGAGAAAGAGGCAGCATAAGGGAAAATTCAAATATATAAATAAAGAAATCCCGTTTTAGCCAATAGAAATGCACAAAACCACAACAAACATGCAGCAGACAACGGATCT **************************************************...((((.....(((....)))....((........)).............((((..(((...................................)))..))))))))..((((...(((...............))).)))).......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | O001 Testis |
O002 Head |
SRR553485 Chicharo_3 day-old ovaries |
SRR902008 ovaries |
SRR553486 Makindu_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553488 RT_0-2 hours eggs |
SRR902009 testis |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................CTAAAGAGGAAAACATCA......................................................................................................................................................... | 18 | 0 | 1 | 4.00 | 4 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...........................................................TAATCCAAAGGGAAATACCGCTAAAGA.................................................................................................................................................................... | 27 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................TAACAGACACCATCGAAAAAAAAA..................................................................................................................... | 24 | 3 | 2 | 0.50 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................CAATAAACCAAAGGGA.................................................................................................................................................................................. | 16 | 1 | 17 | 0.29 | 5 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................AACAGTCCGACGAAAAAAAAAAAAA................................................................................................................. | 25 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ................................................................................................................AAGTGACCGTCGAAAAAAAAAAAA.................................................................................................................. | 24 | 3 | 4 | 0.25 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................................TAACAGACACCATCGAAAAAAA....................................................................................................................... | 22 | 3 | 6 | 0.17 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ....................................TAGGGGTGCGGGAAAAAA.................................................................................................................................................................................................... | 18 | 2 | 7 | 0.14 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...............................................................................................................................................................................TATAAATGAAGAAATGACGTTT..................................................... | 22 | 3 | 7 | 0.14 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| ...............................................................................................................AAACAGTCCGACGAAAAAAAAA..................................................................................................................... | 22 | 3 | 8 | 0.13 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| .................................................................................................................AGAGACGAGCGAAAAAAAAA..................................................................................................................... | 20 | 2 | 12 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ....................................................AATGCAAAAATCAACAGGGAAA................................................................................................................................................................................ | 22 | 3 | 17 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ...........................................................................ACCGCTAAAGTAGAAAA.............................................................................................................................................................. | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .....................................ATGGCCGCGTGAAAAAA.................................................................................................................................................................................................... | 17 | 2 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ............TGGGTGAGTGTGTGAA.............................................................................................................................................................................................................................. | 16 | 1 | 20 | 0.05 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
|
GATTAACTAAACACACACTCACACACTTTCACTTGAATACCCACGCACTTTTTTACGTTATTAGGTTTCCCTTTATGGCGATTTCTCCTTTTGTAGTTGTTACGGTTAAATTTTCTCTGGTTGCTTTTTTTTTTTTTATCGTCTCTTTCTCCGTCGTATTCCCTTTTAAGTTTATATATTTATTTCTTTAGGGCAAAATCGGTTATCTTTACGTGTTTTGGTGTTGTTTGTACGTCGTCTGTTGCCTAGA
**************************************************...((((.....(((....)))....((........)).............((((..(((...................................)))..))))))))..((((...(((...............))).)))).......************************************************** |
Read size | # Mismatch | Hit Count | Total Norm | Total | SRR553486 Makindu_3 day-old ovaries |
SRR618934 dsim w501 ovaries |
SRR553485 Chicharo_3 day-old ovaries |
M025 embryo |
SRR553488 RT_0-2 hours eggs |
SRR553487 NRT_0-2 hours eggs |
SRR902009 testis |
GSM343915 embryo |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................TTAAGTTTTTTCTGGTTGCATTTTT........................................................................................................................ | 25 | 3 | 2 | 1.50 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ...............................................................................................GTTGTTACGGTTAAATTTTCT...................................................................................................................................... | 21 | 0 | 1 | 1.00 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
| ........................................................................................................................................................................................TCTTTAGGGCAAAATCGG................................................ | 18 | 0 | 1 | 1.00 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................TTAAATTTTTTCTGGTTGCATGTTT........................................................................................................................ | 25 | 3 | 2 | 0.50 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ..........................................................................................................TAAGTTTTTTCTGGTTGCATTTTT........................................................................................................................ | 24 | 3 | 2 | 0.50 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................ATCGTCTCTTGCTCCG................................................................................................. | 16 | 1 | 3 | 0.33 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .............................................................................................................................................................ATTCCCTTTTAAGGTTAAA.......................................................................... | 19 | 2 | 5 | 0.20 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ..........................................................................................................TAAGTTTTTTCTGGTTGCATTT.......................................................................................................................... | 22 | 3 | 6 | 0.17 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| .............................................................................................................AGTTTCTCTGGTTGCT............................................................................................................................. | 16 | 1 | 9 | 0.11 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| ................................................................................................................................................................................................................TTACGTGTTTAGGTGTTGGTA..................... | 21 | 3 | 11 | 0.09 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 |
| ...........................................................................................................................................................................TTATATATTTATATGTTTAGGGA........................................................ | 23 | 3 | 13 | 0.08 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| ....................................................................................................................................................................................................................GTGTTTTCGTGTTATTTGT................... | 19 | 2 | 15 | 0.07 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
| .........................................................................................................................................ATCGTCTGTTTCTCC.................................................................................................. | 15 | 1 | 15 | 0.07 | 1 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 |
| .........................................................................................GTTGTAGTTGTTAGGGTTAAT............................................................................................................................................ | 21 | 3 | 16 | 0.06 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |
| ......................................................ACGTTATTGGGTTTC..................................................................................................................................................................................... | 15 | 1 | 20 | 0.05 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 |
Generated: 04/24/2015 at 10:27 AM