ID:

dsi_10339

 Coordinate:

3l:9135908-9136057 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.8 -17.8

Flybase annnotation

CDS [3l_9136058_9136122_+]; exon [3l_9136058_9136122_+]; intron [3l_9135718_9136057_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGTCAGCGAGCAAAAATGACGCGGCGTTGGCAGAAAAAATTTGCTGCGCAAAAAGGCAAAGGGAAAATAAATGCTAACGGCAAGAAGAAGCAGCCAAGCGTCGCGTCCAAAAATGATTTAAACAACAAACCAAATGAGCTTGAACTATATAAGCCAATTGATAAACAAACAGACGGATAACCTTGATTTTTATTTTTCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGATCGGA
**************************************************...........((((((((((((((...))))............((((.(((.((((((....))...............(((.((.(((((.......))))))).)))...........)))))))...))))...))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 GSM343915
embryo
 SRR902008
ovaries
...............................................................................................................................................................................................................GCGGTTGTAGCTCAGTTGGTTA..................... 22 3 2 8.00 16 12 2 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGTTGTAGCTCAGTTGG........................ 19 2 3 5.67 17 8 6 3 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGTTGTAGCTCAGTTGGT....................... 20 2 2 3.00 6 2 3 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................GCCGTTTTAGCTCAGTTGGTA...................... 21 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCTAGCTCAGTTGGTA...................... 16 1 3 2.67 8 2 5 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AAATGTACTTACTGCCGATCGGA 23 0 1 2.00 2 0 0 0 0 0 0 1 0 1 0
...............................................................................................................................................................................................................GCGGGTGTAGCTCAGTTGGT....................... 20 3 20 1.60 32 30 2 0 0 0 0 0 0 0 0
.......................................................................................AAGCAGCCAAGCGTC.................................................................................................................................................... 15 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................GCGGTTGTAGCTCAGTTGGTA...................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGGAGTACCTCAGTTGGTA...................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................TGACGCGGCGTTGGCA.......................................................................................................................................................................................................................... 16 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGTTGTATCTCAGTTGGT....................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................TTGATTTTTATTTTTCAGGGCT.............................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................GCGGTTCTAGCTCAGTTGGTTA..................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............AAAATGACGCGGCGTTGGCA.......................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................GCGGGTGTACCTCAGTTGG........................ 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGGGCTTTACCTCAGTTGGTA...................... 21 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGTTTTAGCTCAGTTGGTTA..................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGGACTAGCTCAGTTGGT....................... 20 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................TTTTTATTTTTCAGGGCTGCC........................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................CTAGCTCAGTTGGTA...................... 15 1 20 0.50 10 0 10 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCCGTTGTAGCTCAGTTGGTA...................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGTTCTAGCTCAGT........................... 16 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CGGTTGTAGCTCAGTTGGT....................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGCTTGTAGCTCAGTTGGTA...................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGGGTTCTAGCTCAGTTGGCA...................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGTAGTAGCTCAGTTGGTA...................... 21 3 3 0.33 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................CGGTTGTAGCTCAGTTGG........................ 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGGTGTATCTCAGTTGG........................ 19 3 13 0.31 4 4 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCTAGCTCAGTTGGTAGA.................... 18 2 20 0.30 6 0 5 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................TCGGTTGTAGCTCAGTTGGT....................... 20 3 10 0.20 2 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGCTTGTAGCTCAGTTGGT....................... 20 3 5 0.20 1 1 0 0 0 0 0 0 0 0 0
TGTCAGCGAGCAAAAAA......................................................................................................................................................................................................................................... 17 1 5 0.20 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................ATATAAGTCAATTGGTAAA..................................................................................... 19 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TCTAGCTCAGTTGGT....................... 15 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGGTGTAGCTCAGTTGGTA...................... 21 3 14 0.14 2 0 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGTAGTAGCTCAGTTGGT....................... 20 3 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTGTCAGGGATGCCGCG........................................ 17 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................GCTATACCTCAGTTGGTAGA.................... 20 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0
......CGAGGAAAAATGACG..................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................GCCCGTCTACCTCAGTTGGTA...................... 21 3 13 0.08 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................CGGGTGTAGCTCAGTTGGTA...................... 20 3 14 0.07 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGTTGTAGCTCAGTTGGTAG..................... 22 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................................GTGGTTGTAGCTCAGTTGGTA...................... 21 3 16 0.06 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGGTGTACCTCAGTTGA........................ 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................AGCCTAGCGTCGCGCC............................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
........................................................................GATAACGGCAAGAACTAGC............................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................GTCTAGCTCAGTTGGTA...................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
........................................................................GCTGACGGCAAGAAG................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................TCGGTTGTAGCTCAGTTGG........................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................CCTTGATTTTGATTTT...................................................... 16 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GGCTATAGCTCAGTTGGTA...................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GCGGCTGTACCTCAGCTGG........................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
....................................................................AAATGCAAACGGCAAG...................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

ACAGTCGCTCGTTTTTACTGCGCCGCAACCGTCTTTTTTAAACGACGCGTTTTTCCGTTTCCCTTTTATTTACGATTGCCGTTCTTCTTCGTCGGTTCGCAGCGCAGGTTTTTACTAAATTTGTTGTTTGGTTTACTCGAACTTGATATATTCGGTTAACTATTTGTTTGTCTGCCTATTGGAACTAAAAATAAAAAGTCCCGACGGCGCCAAGATGGAGTCAACCATTTACATGAATGACGGCTAGCCT
**************************************************...........((((((((((((((...))))............((((.(((.((((((....))...............(((.((.(((((.......))))))).)))...........)))))))...))))...))))))))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................CGCCAAGATGGAGTCAAC......................... 18 0 1 2.00 2 0 1 0 1 0 0
..........................................................................................................................................................................................................GACGGCGCCAAGGTGGAGTCA........................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CGCAGCGCAGGTTTTTACTA..................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................................................................................................TCCGACGGCGCCAAGATGGAGT............................. 22 1 1 1.00 1 0 1 0 0 0 0
ACAGTCGCTCATTCTTACT....................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 0 1 0
..................................................................................................................................................................................................AAAGTCCCGACGGCGCCAAGAT.................................. 22 0 1 1.00 1 0 0 1 0 0 0
.................................................................................................................................GGTTTACTCGATCTTG......................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0
.......................................................................................................................................................................................................TTTGACGGCGCCAAGATGGAG.............................. 21 3 3 0.33 1 1 0 0 0 0 0
.........................................................................................CGACGGTTGGCAGCGGAGGTT............................................................................................................................................ 21 3 4 0.25 1 0 0 1 0 0 0
.....................................................................TTAAGATTGCCAGTCTTCT.................................................................................................................................................................. 19 3 9 0.11 1 0 0 1 0 0 0
............................................ACGCGTTTTTCCCTTTGCCCT......................................................................................................................................................................................... 21 3 17 0.06 1 0 0 0 0 0 1
..........................................................................................................................................................................................AAAACTAAAAAGGCCCGA.............................................. 18 2 19 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:9135858-9136107 + dsi_10339 TGT-----CAGCG----AGC---AA--------AAATGACGCGGC-GTTG----------GC----AGAAAAAATTTG----CTGCGCA------------AAAAGGC--A-AA---------GGGAAAATAAATGCTA-------------------ACG---GC--AAGAAGAAG---------CAGCCAAGCGTCGCGTC-----CAA-A---------------------------------AATGATT-TAAACAACAAACCA------------------------------------------------AATGAGCTTGAACTATATAAGCCAA-T-----------------TGATA------------AACA-A-----A------CAGACGG------ATAACCTTGATT---TTT--A-TT--TTTCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGATCGGA
droSec2 scaffold_0:1610314-1610563 + TGT-----CAGCG----AGC---AA--------AAATGACGCGGC-GTTG----------GC----AGAAAAAATTTG----CTGCGCA------------AAAAGGC--A-AA---------GGGAAAACAAATGCTA-------------------ACG---GC--AAGAAGAAG---------CAGCCAAGCGTCGCGTC-----CAA-A---------------------------------AATGATT-TAAACAACAAACCA------------------------------------------------AATGAGCTTGAACTGTATAAGCCAA-T-----------------TGATA------------AACA-A-----A------CAGACGG------ATAACCTTGATT---TTT--A-TA--TTTCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGATCGGA
dm3 chr3L:9360851-9361098 + TGT-----CAGCG----AGC---AA--------AAATGACGCGGC-GTTG----------GC----AG-AAAAATTTG----CTGCGCA------------AAAAGGC--A-AA---------GGGAAAATAAATGCTA-------------------ACG---GC--AAGAAGAAG---------CAGCCAAGCGTCGCGTC-----CAA-A---------------------------------AATGATT-TAAACAACAAACCA------------------------------------------------AATGCGCTTGAACTGTATAAGCCAA-------------------TGATA------------AACA-A-----A------CAGACGG------ATAACCTTGATT---TTT--A-TT--TTTCAGGGCTGCCGCGGCTCTACCTCAGTTGGTAAATGTACTTACTGCCGTTCGGA
droEre2 scaffold_4784:9360142-9360387 + TGT-----CAGCG----AGC---AA--------AAATGACGCGGC-GTTG----------GC----AG-AAAATTTTG----CTGCGCA------------AAAAAGC----AA---------GGGAAAA----TGCGA-------------------ACA---GC--AAGAAGAAG---------CAGCCAAGCGTCGCGTC-----CAA-C---------------------------------AATGATT-TAAACAACAAACAAACAA--------------------------------------------AATGCGCTTGC-CTATATTCGACAA-T-----------------TGATA------------AACA-A-----A------CAGACGG------TTAACCTTGATT---TTT--A-T---TTTCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGATCGGA
droYak3 3L:2556235-2556489 - TGT-----CAGCG----AGC---AA--------AAATGACGCGAC-GTTG----------GC----AG-AAAAATTTG----CTGCGCA------------AAAAAGC----AA---------AGGAAAA----TGCTA-------------------GCA---GC--AAGAAGAAG---------CAGACAAGCGTCGCGTC-----CAA-C---------------------------------AATGAAT-TAAACAACAAACAAACAA--------------------------------------------AATGCGCTTGA-CTGTATAGAGCAA-T-----------------TGATA------------AACA-A-----ACAGAAACAGACGG------ATAACCTTGATTAATTTT--A-T---TTTCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGATCGGA
droEug1 scf7180000409824:170705-170944 - TGT-----CTGCTAGTAAGA---AA--------AAATGACGCGGC-GTTG----------GC----A--AAAATTTTG----CTGCGCA------------AAAAA-A--ACCA-----A---G---AAA----TGCTA--------------------AG---GC--AAGAAGAAG---------AATCCTGGCGTCGCGTC-----TAA-A---------------------------------AATGTTT-TAAACAACAAACAAAACAAA-------------------------------------------TTGAACTT------TGAAATGTAA-T-----------------TAATC------------AACA-A-----T--------TCCGG------TTAACCTTGATT---C-C--A-T---TTTCAGGGCTGCCGTGGATCTACCTCAGTTGGTAAATGTACTTACTGCCGCTCGGA
droBia1 scf7180000300910:1851465-1851601 - TGTTGC-CCAGCG----GGC---GA--------AAATGACGCGGC-GTTG----------GC----A--AAAATTCTG----CTGCGCA------------AAAAG-C----AG---------GGGAAAA----TGCTC-------------------AGG---GCAGAAGAAGAAG---------CAGCCAGGCGTCGCGTC-----CAA-A---------------------------------AATGATT-TAAACAACAAACAA------------------------------------------------AATGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415664:272468-272730 - TGTTCGCCCAGCG----AGC---GA--------AAATGACGCGGC-GTTG----------GC----AA-AAAATGTTG----CTGCGCA------------AAAAGGCGAA-AA---------GGGAAAA----TGCTC------------------AAAG---GCAGAAGAAGAAG---------CAGCCAGGCGTCGCGTCG----CGA-A---------------------------------AATGATT-TAAACAACAAACAAAGCAAA-AGAA-AGG--AAAACAACC---------------------------------------------A--TTTGAAG-TACC------TAATA--------AACC-----A---------------ACGG------ATAACCTTGAA-AATTTTCTG--A--TTTCAGGGCTGCCGTGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGCTCGGA
droEle1 scf7180000491193:3612602-3612835 + TGT-----CAGCG----AG----AA--------AAATGACGCGGC-GTTG----------GCCAAC---AAAAAATTG----CTGCGCAAAAC-------------------CA---------GGGGAAA----TGCAA-------------------AAG---GC--AAGAAGAAG---------CAGCCAGGCGTCGCGTC-----TAA-A---------------------------------AATGAGT-TAAACAACAAACAAAACAG-------AGA--AAAGCA----------------------------------------TA-----------TAAAACCAGT------CAGTT--------AACC-----A---------------ACGG------ATAACCTTGATT---T--------T-TTTCAGGGCTGCCGCGGTTCTACCTCAGTCGGTAAATGTACTTACTGCCGCTCGGA
droRho1 scf7180000775999:50919-51154 + TGC-----CAGCG----AG----AA--------AAATGACGCGGC-GTTG----------GC----CA-AAAATTTTG----CTGCGCAAAAC-------------------CA---------GAGAAAA----TGCAA-------------------ACG---GC--AAGAAGAAG---------CAGTCAGGCGTCGCGTC-----TAA-A---------------------------------AATGAGT-TAAACAACAAACAAAACAG---------ATAAACACA----------------------------------------TA-----------TAACGACAGTAATAA-TAATA--------AACC-----A---------------ACGG------ATAACCTTGATT------------T-TTGCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGCTCGGA
droFic1 scf7180000454065:2284389-2284628 - TGC-----CAGCC---GAG----AA--------AAATGACGCGGC-GTTG----------GC----AAAAAAAATTTG----CTGCGCA------------AAAAAC-----CA---------GGGAAAA----TGC---------------------AAA---GC--AAGAAGAAG---------CAGCCAGGCGTCGCGTC-----TAA-A---------------------------------AATGAGT-TTAACAACAAACAAAACAAACGAAATA----AAC--------------------------------------------AAAAGCCA----TAAAG-CAGT------CAATA--------AACT-----A---------------AAGG------ATAACCTTGACT------------T-TTTCAGGGCTGCCGTGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGCTCGGA
droKik1 scf7180000302486:1898512-1898784 + CACATCCCTGACG----AGCGAAAAATATATCTAAATGACGCGGC-GCTGCTGCTGCTGTGC----G---AAAACTTG----CTGCGCAAATC-------------------GG---------GTGAAAA----TGC---------------------ACGGTTGC--AAGAAGAAGAACAGGGCAGAGGCAGGCGTCGCGTC-----TGT---------------------------------------------------------------------------------CCGGAGCATTTAAACAAAAACA--AACGCA---------CAAAAGCCAAGC-----------------TGGGAATCAAACTAA-------AAGAGA----------AAAG------CTAACAATGATT---C----A-TTT-TCGCAGGGCTGCCGTGGATCTACCTCAGTTGTTAAATGTACTTACTGCCGCTCGGA
droAna3 scaffold_13337:16950484-16950767 + dan_2686 TGG-----ATGCC----ATC---AA--------AAATGACGCGTTCGC--CTTTTGTTTGGC----G--AAAATTTTG----CTGCGCATTTTGAGGCAAAAAAAAGA--A-AAGAAAAAAAAG----------TG--A-------------------AAA---GA--AATAAGAAG---------AAGC-ATGCGTCGCATCGCATCTAACA---------------------------------AATGCCTGTGACTAATAAACAATTGAAACCTGCTATA--AAC------------------------------AGAGCTTCAAACACTAAATATAA-T-----------------TA-AA------------AATA-A-----A------CAAATAA------AAAAT----ATT---TC---AATTT-CCACAGGGCTGCCGTGGTTCTACCTCAGTTGTTAAATGTACTTACTGCCGATCGGA
droBip1 scf7180000396641:441088-441358 + TGG-----ATGCC----ATG---AA--------AAATGACGCGTTTGC--CTTTTGTTTGGC----GA-AAAATTTTG----CTGCGCATTTT----------GAGGC--A-AA-----AAAAGTGAAAAGA----------------------------A---AC--AAGAAGAAG---------CA----TGCGTCGCATCGCATCTAAAA---------------------------------AATGCCTGTGACTAATAAACAATTGCAACTGGCTATA--AATCCA------------------------------ACTTTAACCAC----------TTTAAAG-TAA---CCATAAATA--------AACT-----T-----T-AAAAACA-------------AATTTTAATT------------T-TCGCAGGGCTGCCGTGGTTCTACCTCAGTTGTTAAATGTACTTACTGCCGATCGGA
dp5 XR_group3a:1459812-1460084 - TCT-----TGGCA----AGCGACAG--------CAATGACGCGTC-GCTT----TG------TTGCG--AAAATTTTG----CTGCGCATTTT-------------------AA---------GTGAAAA----TG--G-------------------ACG---GC--AAGAAGAAG---------CAGC-GTCTGTCGCGGC-----CAC-AGCGTCAGTCGTTTGTCGTCGGTGGCTGCTGTCTGCTG-CTGTGACTAATAAACAACCCGAACAGCACAGA--AAAACATCC---------------------------------------------------GCAG-CATT------TACTA--------AACC-----T-----A------CA-----------TTAACCTTGATT------------T-TCGCAGGGCTGCCGTGGTTCTACCTCAATTGTTAAATGTACTTACTGCCGCTCGGA
droPer2 scaffold_23:1494391-1494663 - TCT-----TGGCA----AGCGACAG--------CAATGACGCGTC-GCTT----TG------TTGCG--AAAATTTTG----CTGCGCATTTT-------------------AA---------GTGAAAA----TG--G-------------------ACG---GC--AAGAAGAAG---------CAGC-GTCTGTCGCGGC-----CAC-AGCGTCAGTCGTTTGTCGTCGGTGGCTGCTGTTTGCTG-CTGTGACTAATAAACAACCCGAACAGCACAGA--AAAACATCC---------------------------------------------------GCAG-CATT------TACTA--------AACC-----T-----A------CA-----------TTAACCTTGATT------------T-TCGCAGGGCTGCCGTGGTTCTACCTCAATTGTTAAATGTACTTACTGCCGCTCGGA
droWil2 scf2_1100000004511:11179618-11179900 + ---------------------------------AAATGACGCTA---------------------GG--AAAATTTTGACTAATGCGCATTTT--------AAAGTGC----AC---------GTAAAAA----TG--GACGACAACGAAAACAAGCTAGG---AAAAAAGAGGAAG---------AGGGCAAGCGTCGG-TC-----AGT------CAGGCACTA--------AG----------GCTGGCTATGACTAATATAT---CG-----GGATCTT--AATCAA---------AAT--AAAAAAAAGAACGCACA---------CAGAAGACG------------GG------TAGTT--AAATCTGA-------AACGGA----------T--TTTAATGCTAACTATTATA------------T-TTGCAGGGCTGCCGCGGATCTACCTCAGTTGTTAAATGTACTTACTGCCGCTCGGA
droVir3 scaffold_13049:14875148-14875240 - AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AACACA-----A------CTCACGT------TTCATTTTCATT---TTG--A-TTTTCCACAGGTGTGCCGTGGTTCTACCTCAGTTGTTAAATGTACTTACTGCCGCTCGGA
droMoj3 scaffold_6680:22003241-22003331 + TTTGGCACTAACA----AAA--TAA--------AAATGACGCTT--GCTT----------GCTTGCGA-AAATTCTTG----CTGCGCATTAA-------------------AA---------GTGAAAA----TG--A-------------------ACA---GC--AAGAGGAAG---------CAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:19311121-19311205 - AAA-----CAATA----AAA---AA--------AAATGAAGCGAC-GCTT----------TCTTGCGA-ACATTTTTG----CTGCGCATTTA-------------------CA---------GTGAAAA----TG--A-------------------ACG---GC--AAGAGGAAG---------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGT-----CAGCG----AGC---AA--------AAATGACGCGGC-GTTG----------GC----AGAAAAAATTTG----CTGCGCA------------AAAAGGC--A-AA---------GGGAAAATAAATGCTA-------------------ACG---GC--AAGAAGAAG---------CAGCCAAGCGTCGCGTC-----CAA-A---------------------------------AATGATT-TAAACAACAAACCA------------------------------------------------AATGAGCTTGAACTATATAAGCCAA-T-----------------TGATA------------AACA-A-----A------CAGACGG------ATAACCTTGATT---TTT--A-TT--TTTCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGATCGGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTACTTACTGCCGATCGGA2312.00201000000000100000
..............................................................................................................................................................................AAG---------CAGCCAAGCGTC....................................................................................................................................................................................................................................................................................................1511.00100000000001000000
....................................TGACGCGGC-GTTG----------GC----A.......................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TTGATT---TTT--A-TT--TTTCAGGGCT..............................................2211.00110000000000000000
........................A--------AAATGACGCGGC-GTTG----------GC----A.......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TTT--A-TT--TTTCAGGGCTGCC...........................................2111.00110000000000000000
TGT-----CAGCG----AGC---AA--------AAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1750.20100000000001000000
droSec2
TGT-----CAGCG----AGC---AA--------AAATGACGCGGC-GTTG----------GC----AGAAAAAATTTG----CTGCGCA------------AAAAGGC--A-AA---------GGGAAAACAAATGCTA-------------------ACG---GC--AAGAAGAAG---------CAGCCAAGCGTCGCGTC-----CAA-A---------------------------------AATGATT-TAAACAACAAACCA------------------------------------------------AATGAGCTTGAACTGTATAAGCCAA-T-----------------TGATA------------AACA-A-----A------CAGACGG------ATAACCTTGATT---TTT--A-TA--TTTCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGATCGGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................AGC---AA--------AAATGACGCGGC-GTTG----------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000
................................................................................................................................................................................................................................................................................................................................................GCCAA-T-----------------TGATA------------AACA-A-----A------CAGACGG------A.................................................................................2511.0010001
dm3
TGT-----CAGCG----AGC---AA--------AAATGACGCGGC-GTTG----------GC----AG-AAAAATTTG----CTGCGCA------------AAAAGGC--A-AA---------GGGAAAATAAATGCTA-------------------ACG---GC--AAGAAGAAG---------CAGCCAAGCGTCGCGTC-----CAA-A---------------------------------AATGATT-TAAACAACAAACCA------------------------------------------------AATGCGCTTGAACTGTATAAGCCAA-------------------TGATA------------AACA-A-----A------CAGACGG------ATAACCTTGATT---TTT--A-TT--TTTCAGGGCTGCCGCGGCTCTACCTCAGTTGGTAAATGTACTTACTGCCGTTCGGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................AAAAGGC--A-AA---------GGGAAAATAAA....................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................ACA-A-----A------CAGACGG------ATAACCTTG.........................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTTACTGCCGTTCGG.1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................A-------------------ACG---GC--AAGAAGAAG---------CAG.............................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTACTGCCGTTCGGA1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TA------------AACA-A-----A------CAGACGG------ATAACCTTG.........................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACTTACTGCCGTTCGGA2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................CTGCGCA------------AAAAGGC--A-AA---------G..............................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................A-A-----A------CAGACGG------ATAACCTTGA........................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCCGCGGCTCTACCTCAGTT..........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................G----CTGCGCA------------AAAAGGC--A-AA---------GGGA...........................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................A------------------------------------------------AATGCGCTTGAACTGTA.............................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACCTCAGTTGGTAAATGTACTTACT..........2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................A------CAGACGG------ATAACCTTGATT---TTT--A-............................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................G---GC--AAGAAGAAG---------CAGCCAAG........................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................GCGCA------------AAAAGGC--A-AA---------GGGAAA.........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................A------------AAAAGGC--A-AA---------GGGAAAATA......................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................CGCA------------AAAAGGC--A-AA---------GGGAAA.........................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TT--A-TT--TTTCAGGGCTGCCGCGGCT.....................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................GG------ATAACCTTGATT---TTT--A-TT--T.......................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCGGCTCTACCTCAGTTGGTAAA....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGCTGCCGCGGCTCTACC................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................GCCAA-------------------TGATA------------AACA-A-----A------CA.............................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................AAGAAGAAG---------CAGCCAAGCGTCG...................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ACCA------------------------------------------------AATGCGCTTGAACTG...............................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................A-A-----A------CAGACGG------ATAACCTTGATT---...................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................AAGCGTCGCGTC-----CAA-A---------------------------------AATGA...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATGTACTTACTGCCGTTCG..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCCGCGGCTCTACCTCAGTTGGTAAAT...................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CGG------ATAACCTTGATT---TTT--A-TT--TTT.....................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................AAAGGC--A-AA---------GGGAAAATAAATG..................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATGTACTTACTGCCGTTC...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................GATA------------AACA-A-----A------CAGACGG------ATAACCTTGA........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
........................................................................................................................................................................AAGAAGAAG---------CAGCCAAGCGTCGG..................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AG---------CAGCCAAGCGTCGCGTC-----C.........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................AGGC--A-AA---------GGGAAAATAAA....................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................A-TT--TTTCAGGGCTGCCGCGGC......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................ATA------------AACA-A-----A------CAGACGG------ATAACCTTG.........................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................CGCGGC-GTTG----------GC----AG-AAAAATT..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................A-----A------CAGACGG------ATAACCTTG.........................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGCGGCTCTACCTCAGTTGGTAAAT...................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................AG-AAAAATTTG----CTGCGCA------------A....................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................AG-AAAAATTTG----CTGCGCA------------AAAAGGC--A-AA---------GG.............................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGTAAATGTACTTAC...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AA--------AAATGACGCGGC-GTTG----------G.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGTACTTACTGCCGTTCGGA2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
droEre2
TGT-----CAGCG----AGC---AA--------AAATGACGCGGC-GTTG----------GC----AG-AAAATTTTG----CTGCGCA------------AAAAAGC----AA---------GGGAAAA----TGCGA-------------------ACA---GC--AAGAAGAAG---------CAGCCAAGCGTCGCGTC-----CAA-C---------------------------------AATGATT-TAAACAACAAACAAACAA--------------------------------------------AATGCGCTTGC-CTATATTCGACAA-T-----------------TGATA------------AACA-A-----A------CAGACGG------TTAACCTTGATT---TTT--A-T---TTTCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGATCGGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................GCA------------AAAAAGC----AA---------GGGAAAA----TGC.................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
droYak3
TGT-----CAGCG----AGC---AA--------AAATGACGCGAC-GTTG----------GC----AG-AAAAATTTG----CTGCGCA------------AAAAAGC----AA---------AGGAAAA----TGCTA-------------------GCA---GC--AAGAAGAAG---------CAGACAAGCGTCGCGTC-----CAA-C---------------------------------AATGAAT-TAAACAACAAACAAACAA--------------------------------------------AATGCGCTTGA-CTGTATAGAGCAA-T-----------------TGATA------------AACA-A-----ACAGAAACAGACGG------ATAACCTTGATTAATTTT--A-T---TTTCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGATCGGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCGGTTCTACCTCAGTTGGTA......................2411.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................CGG------ATAACCTTGATTAATTTT--..............................................................2111.00100100000000
.................................................................................................................................................................................................................................................................................................................................GCTTGA-CTGTATAGAGCA......................................................................................................................................................1811.00110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTAAATGTACTTACTGCCG......2111.00101000000000
....................................................................................................................................................................................................................................................................ACAAACAAACAA--------------------------------------------AATGCGCTTGA-C.................................................................................................................................................................2411.00100100000000
droEug1
TGT-----CTGCTAGTAAGA---AA--------AAATGACGCGGC-GTTG----------GC----A--AAAATTTTG----CTGCGCA------------AAAAA-A--ACCA-----A---G---AAA----TGCTA--------------------AG---GC--AAGAAGAAG---------AATCCTGGCGTCGCGTC-----TAA-A---------------------------------AATGTTT-TAAACAACAAACAAAACAAA-------------------------------------------TTGAACTT------TGAAATGTAA-T-----------------TAATC------------AACA-A-----T--------TCCGG------TTAACCTTGATT---C-C--A-T---TTTCAGGGCTGCCGTGGATCTACCTCAGTTGGTAAATGTACTTACTGCCGCTCGGASizeHit CountTotal NormTotal
No Reads
droBia1
TGTTGC-CCAGCG----GGC---GA--------AAATGACGCGGC-GTTG----------GC----A--AAAATTCTG----CTGCGCA------------AAAAG-C----AG---------GGGAAAA----TGCTC-------------------AGG---GCAGAAGAAGAAG---------CAGCCAGGCGTCGCGTC-----CAA-A---------------------------------AATGATT-TAAACAACAAACAA------------------------------------------------AATGAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TGTTCGCCCAGCG----AGC---GA--------AAATGACGCGGC-GTTG----------GC----AA-AAAATGTTG----CTGCGCA------------AAAAGGCGAA-AA---------GGGAAAA----TGCTC------------------AAAG---GCAGAAGAAGAAG---------CAGCCAGGCGTCGCGTCG----CGA-A---------------------------------AATGATT-TAAACAACAAACAAAGCAAA-AGAA-AGG--AAAACAACC---------------------------------------------A--TTTGAAG-TACC------TAATA--------AACC-----A---------------ACGG------ATAACCTTGAA-AATTTTCTG--A--TTTCAGGGCTGCCGTGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGCTCGGASizeHit CountTotal NormTotal
No Reads
droEle1
TGT-----CAGCG----AG----AA--------AAATGACGCGGC-GTTG----------GCCAAC---AAAAAATTG----CTGCGCAAAAC-------------------CA---------GGGGAAA----TGCAA-------------------AAG---GC--AAGAAGAAG---------CAGCCAGGCGTCGCGTC-----TAA-A---------------------------------AATGAGT-TAAACAACAAACAAAACAG-------AGA--AAAGCA----------------------------------------TA-----------TAAAACCAGT------CAGTT--------AACC-----A---------------ACGG------ATAACCTTGATT---T--------T-TTTCAGGGCTGCCGCGGTTCTACCTCAGTCGGTAAATGTACTTACTGCCGCTCGGASizeHit CountTotal NormTotal
No Reads
droRho1
TGC-----CAGCG----AG----AA--------AAATGACGCGGC-GTTG----------GC----CA-AAAATTTTG----CTGCGCAAAAC-------------------CA---------GAGAAAA----TGCAA-------------------ACG---GC--AAGAAGAAG---------CAGTCAGGCGTCGCGTC-----TAA-A---------------------------------AATGAGT-TAAACAACAAACAAAACAG---------ATAAACACA----------------------------------------TA-----------TAACGACAGTAATAA-TAATA--------AACC-----A---------------ACGG------ATAACCTTGATT------------T-TTGCAGGGCTGCCGCGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGCTCGGASizeHit CountTotal NormTotal
No Reads
droFic1
TGC-----CAGCC---GAG----AA--------AAATGACGCGGC-GTTG----------GC----AAAAAAAATTTG----CTGCGCA------------AAAAAC-----CA---------GGGAAAA----TGC---------------------AAA---GC--AAGAAGAAG---------CAGCCAGGCGTCGCGTC-----TAA-A---------------------------------AATGAGT-TTAACAACAAACAAAACAAACGAAATA----AAC--------------------------------------------AAAAGCCA----TAAAG-CAGT------CAATA--------AACT-----A---------------AAGG------ATAACCTTGACT------------T-TTTCAGGGCTGCCGTGGTTCTACCTCAGTTGGTAAATGTACTTACTGCCGCTCGGASizeHit CountTotal NormTotal
No Reads
droKik1
CACATCCCTGACG----AGCGAAAAATATATCTAAATGACGCGGC-GCTGCTGCTGCTGTGC----G---AAAACTTG----CTGCGCAAATC-------------------GG---------GTGAAAA----TGC---------------------ACGGTTGC--AAGAAGAAGAACAGGGCAGAGGCAGGCGTCGCGTC-----TGT---------------------------------------------------------------------------------CCGGAGCATTTAAACAAAAACA--AACGCA---------CAAAAGCCAAGC-----------------TGGGAATCAAACTAA-------AAGAGA----------AAAG------CTAACAATGATT---C----A-TTT-TCGCAGGGCTGCCGTGGATCTACCTCAGTTGTTAAATGTACTTACTGCCGCTCGGASizeHit CountTotal NormTotal
No Reads
droAna3
TGG-----ATGCC----ATC---AA--------AAATGACGCGTTCGC--CTTTTGTTTGGC----G--AAAATTTTG----CTGCGCATTTTGAGGCAAAAAAAAGA--A-AAGAAAAAAAAG----------TG--A-------------------AAA---GA--AATAAGAAG---------AAGC-ATGCGTCGCATCGCATCTAACA---------------------------------AATGCCTGTGACTAATAAACAATTGAAACCTGCTATA--AAC------------------------------AGAGCTTCAAACACTAAATATAA-T-----------------TA-AA------------AATA-A-----A------CAAATAA------AAAAT----ATT---TC---AATTT-CCACAGGGCTGCCGTGGTTCTACCTCAGTTGTTAAATGTACTTACTGCCGATCGGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
TGG-----ATGCC----ATC---AA--------AAATGACGCGTT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000002
..............................................................................................................................................................AAA---GA--AATAAGAAG---------AAGC-ATG........................................................................................................................................................................................................................................................................................................2111.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTACTTACTGCCGATCGG.2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................TT---TC---AATTT-CCACAGGGCTGC............................................2111.001100000
........................................................................................................AAGA--A-AAGAAAAAAAAG----------T...................................................................................................................................................................................................................................................................................................................................................................1820.501010000
....................................................................................................AAAAAAGA--A-AAGAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................20170.122020000
..................................................................................................AAAAAAAAGA--A-AAGAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................21160.061001000
....................................................................................................AAAAAAGA--A-AAGAAAAAAA................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
.....................................................................................................AAAAAGA--A-AAGAAAAAAAA...............................................................................................................................................................................................................................................................................................................................................................................19200.051010000
...................................................................................................AAAAAAAGA--A-AAGAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
..................................................................................................AAAAAAAAGA--A-AAGAAAAAA.................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
droBip1
TGG-----ATGCC----ATG---AA--------AAATGACGCGTTTGC--CTTTTGTTTGGC----GA-AAAATTTTG----CTGCGCATTTT----------GAGGC--A-AA-----AAAAGTGAAAAGA----------------------------A---AC--AAGAAGAAG---------CA----TGCGTCGCATCGCATCTAAAA---------------------------------AATGCCTGTGACTAATAAACAATTGCAACTGGCTATA--AATCCA------------------------------ACTTTAACCAC----------TTTAAAG-TAA---CCATAAATA--------AACT-----T-----T-AAAAACA-------------AATTTTAATT------------T-TCGCAGGGCTGCCGTGGTTCTACCTCAGTTGTTAAATGTACTTACTGCCGATCGGASizeHit CountTotal NormTotal
No Reads
dp5
TCT-----TGGCA----AGCGACAG--------CAATGACGCGTC-GCTT----TG------TTGCG--AAAATTTTG----CTGCGCATTTT-------------------AA---------GTGAAAA----TG--G-------------------ACG---GC--AAGAAGAAG---------CAGC-GTCTGTCGCGGC-----CAC-AGCGTCAGTCGTTTGTCGTCGGTGGCTGCTGTCTGCTG-CTGTGACTAATAAACAACCCGAACAGCACAGA--AAAACATCC---------------------------------------------------GCAG-CATT------TACTA--------AACC-----T-----A------CA-----------TTAACCTTGATT------------T-TCGCAGGGCTGCCGTGGTTCTACCTCAATTGTTAAATGTACTTACTGCCGCTCGGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................T-------------------AA---------GTGAAAA----TG--G-------------------ACG---GC--AAGAAGAAG---------................................................................................................................................................................................................................................................................................................................2713.0030000000030
..............................................................................................................................AAAA----TG--G-------------------ACG---GC--AAGAAGAAG---------CAGC-...........................................................................................................................................................................................................................................................................................................2511.0010000000010
.................................................................................................................................................................................................................................TGTCGTCGGTGGCTGCTGTCTGCTG-CTG............................................................................................................................................................................................................................................2811.0010000001000
..........................................................................................................................................................................................................................AGTCGTTTGTCGTCGGTGGCTG..........................................................................................................................................................................................................................................................2211.0010100000000
................................................................................................................AA---------GTGAAAA----TG--G-------------------ACG---GC--AAG...............................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................T------------T-TCGCAGGGCTGCCGTGGTT.....................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTACCTCAATTGTTAAATGTACT..............2611.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATT------------T-TCGCAGGGCTGCCGTGGTTC....................................2411.0010100000000
..........................................................................................TTT-------------------AA---------GTGAAAA----TG--G-------------------ACG---G.....................................................................................................................................................................................................................................................................................................................................1911.0010000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................CA-----------TTAACCTTGATT------------T-TCGCAG..................................................2111.0010100000000
.................................................................................................................A---------GTGAAAA----TG--G-------------------ACG---GC--AAGAA.............................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATT------------T-TCGCAGGGCTGCCGTGGT......................................2211.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAATTGTTAAATGTACTTA............2111.0010100000000
.............................................................................................................................................................................................................................................................................CCGAACAGCACAGA--AAAACA.......................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................G-------------------ACG---GC--AAGAAGAAG---------CAGC-...........................................................................................................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGCCGTGGTTCTACCT...............................2011.0010001000000
droPer2
TCT-----TGGCA----AGCGACAG--------CAATGACGCGTC-GCTT----TG------TTGCG--AAAATTTTG----CTGCGCATTTT-------------------AA---------GTGAAAA----TG--G-------------------ACG---GC--AAGAAGAAG---------CAGC-GTCTGTCGCGGC-----CAC-AGCGTCAGTCGTTTGTCGTCGGTGGCTGCTGTTTGCTG-CTGTGACTAATAAACAACCCGAACAGCACAGA--AAAACATCC---------------------------------------------------GCAG-CATT------TACTA--------AACC-----T-----A------CA-----------TTAACCTTGATT------------T-TCGCAGGGCTGCCGTGGTTCTACCTCAATTGTTAAATGTACTTACTGCCGCTCGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTACTTACTGCCGCTCG..2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGGCTGCCGTGGTTCTA..................................2011.001000100
.......................................................................................................................................................................................................................GTCAGTCGTTTGTCGTCGGTG..............................................................................................................................................................................................................................................................2111.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCTGCCGTGGTTCTACCTC..............................2111.001000001
.............................................................................................................................................................................................................................................CTGCTGTTTGCTG-CTGTGACT.......................................................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................................................................................................................GA--AAAACATCC---------------------------------------------------GCAG-CATT------TACT..............................................................................................................................2311.001010000
............................................................................................................................................................................................................................TCGTTTGTCGTCGGTGGC............................................................................................................................................................................................................................................................1811.001000100
..................................................................G--AAAATTTTG----CTGCGCAT................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATGTACTTACTGCCGCTCGGA2411.001000001
droWil2
---------------------------------AAATGACGCTA---------------------GG--AAAATTTTGACTAATGCGCATTTT--------AAAGTGC----AC---------GTAAAAA----TG--GACGACAACGAAAACAAGCTAGG---AAAAAAGAGGAAG---------AGGGCAAGCGTCGG-TC-----AGT------CAGGCACTA--------AG----------GCTGGCTATGACTAATATAT---CG-----GGATCTT--AATCAA---------AAT--AAAAAAAAGAACGCACA---------CAGAAGACG------------GG------TAGTT--AAATCTGA-------AACGGA----------T--TTTAATGCTAACTATTATA------------T-TTGCAGGGCTGCCGCGGATCTACCTCAGTTGTTAAATGTACTTACTGCCGCTCGGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................TATTATA------------T-TTGCAGGGCTGCC...........................................2113.00330000
................................................................................................................................AA----TG--GACGACAACGAAAACA................................................................................................................................................................................................................................................................................................................................................2012.00220000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TAACTATTATA------------T-TTGCAGGGC...............................................2112.00210001
..................................................................................................................................................................................................................T------CAGGCACTA--------AG----------GCTGGCTATG..........................................................................................................................................................................................................................................2211.00100010
......................................................................................................AAGTGC----AC---------GTAAAAA----TG--GACG............................................................................................................................................................................................................................................................................................................................................................2111.00110000
.....................................................................................................................................................................AAAAAGAGGAAG---------AGGGCAAGC.......................................................................................................................................................................................................................................................................................................2111.00101000
..............................................................................................................................................................AGG---AAAAAAGAGGAAG---------AGGGC...........................................................................................................................................................................................................................................................................................................2111.00100001
droVir3
AT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------AACACA-----A------CTCACGT------TTCATTTTCATT---TTG--A-TTTTCCACAGGTGTGCCGTGGTTCTACCTCAGTTGTTAAATGTACTTACTGCCGCTCGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTTACTGCCGCTCGGA1911.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
TTTGGCACTAACA----AAA--TAA--------AAATGACGCTT--GCTT----------GCTTGCGA-AAATTCTTG----CTGCGCATTAA-------------------AA---------GTGAAAA----TG--A-------------------ACA---GC--AAGAGGAAG---------CAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AAA-----CAATA----AAA---AA--------AAATGAAGCGAC-GCTT----------TCTTGCGA-ACATTTTTG----CTGCGCATTTA-------------------CA---------GTGAAAA----TG--A-------------------ACG---GC--AAGAGGAAG---------CA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:10 PM