dsi_1031

Name	Class	Family	Strand
Gypsy8-I_Dpse-int	LTR	Gypsy	-
Gypsy1-I_Dya-int	LTR	Gypsy	-

GGCAGATGGAAAAGATTGCTTCACTTGGCAACATTGAAGAACGCTCGATGATCCGATTTGTTGTGGACGCCCTAAACATGAGGAGTAATTTTAGGAACTCTCTCTACAGTTGCAAGTCCTACAAAGAGCTAAAAGAGCAGTACCTACTTCAGCTGCAGCAGCAGGAGTAACAGTTGCAGCAGCAATTGCAACAACTGCAGCATGCTGCCCTTGCGGGAGCAGGCGCCAACGACGTGCAGCAGAAGCAGGT ************************************************.(((....((((..((....))..))))...)))((((((.(((((....)).))).)))))).(((.((....)).)))......(((((...((((((.((((...)))).)))))).(((((((....))))))).....)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M023 head
...................................................................................................................................................................................................................TGCGGGAGCAGGCGCCAACGACGTGC.............	26	0	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................GCTGTCCTTGCGGGCGTAGG...........................	20	3	3	0.33	1	0	0	1	0
................................................................................................................................................TACTTCAGGTCCAGCTGCAGG.....................................................................................	21	3	7	0.29	2	0	2	0	0
.........................................................................................................................CAAAGAGCTAAAAGAT.................................................................................................................	16	1	11	0.27	3	2	0	1	0
...................................................TTCGATTTGTTGTGGA.......................................................................................................................................................................................	16	1	18	0.22	4	0	4	0	0
.........................................................................................................................CAAAGAGCTAAAAGA..................................................................................................................	15	0	5	0.20	1	1	0	0	0
...............................................................................................................................GCTAGAAGAGCAGTAAC..........................................................................................................	17	2	15	0.07	1	1	0	0	0
.................................................CATTCGATTTGTTGTGGA.......................................................................................................................................................................................	18	2	19	0.05	1	0	0	0	1

CCGTCTACCTTTTCTAACGAAGTGAACCGTTGTAACTTCTTGCGAGCTACTAGGCTAAACAACACCTGCGGGATTTGTACTCCTCATTAAAATCCTTGAGAGAGATGTCAACGTTCAGGATGTTTCTCGATTTTCTCGTCATGGATGAAGTCGACGTCGTCGTCCTCATTGTCAACGTCGTCGTTAACGTTGTTGACGTCGTACGACGGGAACGCCCTCGTCCGCGGTTGCTGCACGTCGTCTTCGTCCA ************************************************.(((....((((..((....))..))))...)))((((((.(((((....)).))).)))))).(((.((....)).)))......(((((...((((((.((((...)))).)))))).(((((((....))))))).....)))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries
.....................................................................................................GTGATGTCAACGTCGAGGATGT...............................................................................................................................	22	3	1	2.00	2	2	0	0	0	0
...............................................................................................ATGAGAGAGATGTCAACGTTCAGGATGT...............................................................................................................................	28	1	2	1.00	2	0	2	0	0	0
...............................................................................................................CGTTCAGGATGTTTCTCGATGTTAT..................................................................................................................	25	2	1	1.00	1	0	0	1	0	0
.................................................................................................................TTCAGGATGTTTCTCGATGTTATCGTCAT............................................................................................................	29	2	1	1.00	1	0	0	1	0	0
...................................................................................................CAGCGATGTCAGCGTTCAGGAT.................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0
...........................................................................................ATCCTTGAGAGAGATGTCAAC..........................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0
................................................................................................TGAGAGAGATGTCAACGTTCAGGAT.................................................................................................................................	25	0	1	1.00	1	0	1	0	0	0
......................................................................................................CGATGTCAGCGTTCAGGATGT...............................................................................................................................	21	2	1	1.00	1	1	0	0	0	0
...............................................................................................ATGAGAGAGATGTCAACGTTCAGGAT.................................................................................................................................	26	1	2	0.50	1	1	0	0	0	0
.............................................................................................................CACGTGCAGGATGTTTCT...........................................................................................................................	18	2	2	0.50	1	0	1	0	0	0
...............................................................................................TTTAGAGAGATGTCAACGCTCC.....................................................................................................................................	22	3	2	0.50	1	0	0	0	1	0
...............................................TAGTAGGCTAAATAACAC.........................................................................................................................................................................................	18	2	3	0.33	1	0	1	0	0	0
.............................................................................................................................................TGAGTGAAGCCGACGTCGTCG........................................................................................	21	3	10	0.20	2	2	0	0	0	0
............................................................................................................................................ATGGATGAAGACCACGTTGT..........................................................................................	20	3	7	0.14	1	0	0	0	0	1
............................................................................................................................................ATGGATGAAGACCACGT.............................................................................................	17	2	12	0.08	1	0	0	1	0	0
............................................................................................................CAATCTTCAGGATGTT..............................................................................................................................	16	2	20	0.05	1	0	0	1	0	0
...................................................................................................GAGAGATGTCAACGC........................................................................................................................................	15	1	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:799287-799536 -	dsi_1031	GGCAGATGGAAAAGATTGCTTCACTTGGCAACATTGAAGAACGCTCGATGA-TCCGATTTGTTGTGGACGCCCTAAAC---------ATGAG-------------------------------------------------------GAGTAATTTTAGG----------------------------------------------------------------------------------------------AACTCTCTCTACAGTTGCAAGTCCTACAAAGAGCTAAAAGAGCAGTACCTACTTCAGCTGCA-GCAGCAGGAGTAACAGTTGCAGCAGC---AATTGCAACAACTGCAGCAT--GCTGCCCTTGCGGGAG-----------CAGGCGC--CAACGACG--TGCAGCAGAAG------CAGGT
droSec2	scaffold_75:118380-118512 -		TGCAGATGAAAAAGATAGCTTCACTTGGAAACATTGAAGAACGCTCGGTGA-TCCGCAATGTTGTGGGCGGCCTAAAC---------ATAAA----------------------------------------------------------------CAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAGTTGCAAGTCCTACAAAGAGCTACAATAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------
dm3	chr2RHet:3162628-3162796 -		GA-AGATGAAAAAGATTGCTTCACTTGGCAAGATTGAAGAACACTCGGTGA-TCCGCTATGTTGTGTACGGCCTAAAC---------ATGAG-------------------------------------------------------GAGTGATTTTAGA----------------------------------------------------------------------------------------------TACTCTCTCTACCGTTGTAAGTCCTCTAAAGAGCTATAAGAGTAGAATGAGGTT-----------------------------------------------------------------------------------------GCAACAAG---------A---------AGGGGCACATTT
droEre2	scaffold_4690:5954441-5954587 +		CTACAGCAGCAGCAACAACAGCAGCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AGCAGCAGCAACAACAGCAGCTGCAG-------------------------------------------------------------------------CAGCAACAACTGCA-GCAGCAACTGCAACAACAGCAGC---TGCAACTGCAA---CA------GCAGCTGCAACTGCAACAG-----------CAGCTGCAAC---------TGCAACAGCAGCAG--------
droYak3	chr2h:152618-152759 +		TACAGATGAAAAAGATCGCTTCACTTGGCAACATTGATGCACGTTCAGTTA-TCCGCTATGTTGTTGACGGCTTGAAC---------ATGAG-------------------------------------------------------AAGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAGTTGCAAGTCTTACAAAGAACTACAGGAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------
droEug1	scf7180000409110:929062-929209 +		AGTTGCA-------ACTGCAGCA--CCGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGC------A------------------GCTATCG---------------------------------CAGCAG-------------------CAGCAGCAACAGC---------AACAGTT-GCAATTACAGCAGCAACAGCAGC---AGCAGCTACAA---CA------GCAACAGCAGCTACAGCAG-----------CAGCAACTTC---------AGCAGCAACAGCAG--------
droBia1	scf7180000302402:2696442-2696614 +		AACCT------------------------------------------------------------------------------------TAG-------------------------------------------------------CAGCAACTCCGGCAGCACTCTCAGTCTGAACCAGCTGCAGGCCCAGCTGC------AGCA---------------GCAGCAG-------------------------------------------------------------------------CAGCAACAGCAGCA-GCAACAGCAGCAGCAACTGCAGC---AGCAACAGCAACACCA---------GCAGCACCAGCAACAGTTGCTGCTGAACAACAACAAC---------AACAGCAGCAGCAG--------
droTak1	scf7180000414986:10462-10650 -		TAATAATGATAAATATAGCTTTACAGGGCTCAATTGACGGAGAGTCTCTCA-TTGCGTACATTGTGGATGGTTTGGAT---------ATACC-------------------------------------------------------AAGTGAGTTTAAG----------------------------------------------------------------------------------------------TTTAACTTGTACAGCTGTAAGGAGTTTCAAGAGCTAAAAGAAAAGTTCGAGATATACCAA-------CGCAAG---------------------------------------------------TGTCAA-----------TCGAACAAAC---------AAGTCAAGCA----------GC
droEle1	scf7180000490497:37930-38071 +		TGCAGATGAGGAAGATTGCAGCACTTGGCAGCATAGATGCACGTTCTGTAA-TACGCTACATTGTGGAAGGCCTAAAT---------CTGAG-------------------------------------------------------GAGCGATTTTAAA----------------------------------------------------------------------------------------------TACACTCTCTATAATTGCAAATCTTTTAGAGAGCTGCAGGAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000777393:33729-33870 +		TGCAGATGAGGAAGACTGCTGCTCTTGGCAGCATAGATGCACGTTCTGTAA-TCCGCTACATCGTGGACGGTTTAAAC---------TTAAG-------------------------------------------------------GAGTGACTTCAAA----------------------------------------------------------------------------------------------TACACTCTCTACAGTTGCAAGTCCTTTAAAGAGCTGCAGGAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454066:3350947-3351154 +		GGCGGGGAA----TGGTATATTTCTTGGG-GGATTGGGGCATGGG---AGATTCTGACTTGTCGTC----------ATATCAGCAACATG-TTCCAAATAT----------ACAACAGCCGCA--------------------------ACGCATTCATG----------------------------------------------G------ACATGATCTACTCTTG---------------------------------CAACAG-------------------CAGCAGCAGCAGCAGCTCCCACAGCAGCA-GCAGCAACAGCAACAACAGCAGCAGC---AGCAGCA--------------------------------------------GCAACA---------------ACAACTT------GTGGC
droKik1	scf7180000301968:4937-5078 +		TGCAGATGAAAAAGATTGCGTCACTTGGCAACATCGATGTACGTTCAGTAA-TCCGTTATGTTGTTGACGGCCTAAGC---------ATGAG-------------------------------------------------------GAGTGACTTTAGA----------------------------------------------------------------------------------------------TACTCTCTCTACTGTTGCAAAACGTACAAAGAGCTAAAGGAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13117:609375-609521 -		CAGTGACCAGCTGGGCAGGGAGGCAGAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------CAGTACAAGCTGC------AGCAGCAGCAGCAGCAGCAGCAGCGGCAGGAGCAGCTTGAGCTGCACCAGATGCAGATGCAA--------------------------------------------------------------------------------------------CA---------GATGCAGATGCAACAG-----------ATGCAGATGC---------A---ACAGATG------CAGAT
droBip1	scf7180000393756:16847-17002 +		TACAGATGAAGAAAATTGCAGCACTTGGCAGCATCGATGGAAGTTCTGTAA-TCCGCTACATAGTAGACGGCCTGAAC---------TTGAG-------------------------------------------------------GAGTGACTTCAAA----------------------------------------------------------------------------------------------TACACCCTGTACAATTGCAAGTCTTTCAAAGAGCTGCAGGAGCAATATGACCTATTT-------------------------------------------------------------------------------------------------------------------------GAAC
dp5	XL_group1e:3880399-3880538 +		CAGTTGCAACTGCAACAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AACA---------------GCAGCAG-------------------------------------------------------------------------CAGCAACAGCAGCA-GCAACAGCAGCAGCAACAGCAGC---AGCAACAGCAA---CA------ATTGCAGCAGGTGCAGCAG-----------CAGCAGCAAC---------AACAGCAGCAGCAGAAACAGAT
droPer2	scaffold_5:813634-813780 -		CTCCCAGCAATCTGCAAGTGCGGCACAGCTC---------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAGCAGCAGC------AACAGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAGCAACAACAACAGCAGCAGCAA--------------------------------------------------------------------------------------------CA---------GCAGCAGCAACAGCAG-----------CAGCAACAAC---------AGCAGCA---G------CAGCA
droWil2	scf2_1100000004897:26972-27180 -		TTCATACGAAGTCAATCGCAGCAGAAGGCAATATAGATATGAAATCGGTGT-TGCGCTATATAGTAGACGGTTTGAAC---------ATGAA-------------------------------------------------------GAACGACTTAAAG----------------------------------------------------------------------------------------------ATCAACTTATATTGCGCCCAGTCATTCAGAGAGCTACGAGAAAAGTATGAAATCTATTAGCACGCAATGGAAATGGCAAAGACGGATGT----------------------------------------G-----------CCACAAAGTC---------TGCAGAAA--G------CTGTC
droVir3	scaffold_12875:10543385-10543514 +		AACAACAAC-AACAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAACA-ACAGCAGCAGCAACAGCAGCAGCAAC---ATTTGCAACAACAACAGCAAACTCAGCAGCTGGAGAAA-----------AAGGAGGAGAAACGCCGCGC---------ACAGGAGAAGGC
droMoj3	scaffold_6680:8751186-8751369 -		CGCTAAACAGA----TT--TGCA-----------------------------------------------CCTTGCAT---------ATAAAGCCAAATTTACAAGCTGTAACGAAAATTGCAACGCAAATATGCAAATAACTATAGAAGCA---------------------------------AGCCCCAGCAGC------AG----------------------------------------------------------------------------------CAGCAGCAACAGCA------GCAGCAGCA-GCAGCAGCAGCAGCAA------------------------CA---------GCAGCAG---CAGCAG-----------CAGCAACAGC---------AGCAGCAGCAG------CAGGC
droGri2	scaffold_15252:12524964-12525097 -		CACTTGCCAGTGACA--------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAGTAGCAGCA------GCAGCAGCAGCAGTAGCAGCAG----------------------------------------------------CAGCAGCAGTAGCAGCAGCAGCAGCAGCA-G---------------------------------------CA---------GCAGCAGTGGCAGCAG-----------CAGCAGTGGC---------AGCAGCAGCAGCAG--------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GGCAGATGGAAAAGATTGCTTCACTTGGCAACATTGAAGAACGCTCGATGA-TCCGATTTGTTGTGGACGCCCTAAAC---------ATGAG-------------------------------------------------------GAGTAATTTTAGG----------------------------------------------------------------------------------------------AACTCTCTCTACAGTTGCAAGTCCTACAAAGAGCTAAAAGAGCAGTACCTACTTCAGCTGCA-GCAGCAGGAGTAACAGTTGCAGCAGC---AATTGCAACAACTGCAGCAT--GCTGCCCTTGCGGGAG-----------CAGGCGC--CAACGACG--TGCAGCAGAAG------CAGGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................................................................................................................................................................................................................................................................................................................................TGCGGGAG-----------CAGGCGC--CAACGACG--TGC...................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CAAAGAGCTAAAAGAT............................................................................................................................................	16	11	0.27	3	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................CAAAGAGCTAAAAGA.............................................................................................................................................	15	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TGCAGATGAAAAAGATAGCTTCACTTGGAAACATTGAAGAACGCTCGGTGA-TCCGCAATGTTGTGGGCGGCCTAAAC---------ATAAA----------------------------------------------------------------CAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAGTTGCAAGTCCTACAAAGAGCTACAATAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

GA-AGATGAAAAAGATTGCTTCACTTGGCAAGATTGAAGAACACTCGGTGA-TCCGCTATGTTGTGTACGGCCTAAAC---------ATGAG-------------------------------------------------------GAGTGATTTTAGA----------------------------------------------------------------------------------------------TACTCTCTCTACCGTTGTAAGTCCTCTAAAGAGCTATAAGAGTAGAATGAGGTT-----------------------------------------------------------------------------------------GCAACAAG---------A---------AGGGGCACATTT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................TGGCAAGATTGAAGAACACTCGGTGA-................................................................................................................................................................................................................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TGA-TCCGCTATGTTGTGTA................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................................................................................................................AGTGATTTTAGA----------------------------------------------------------------------------------------------TACTCT................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................TCGGTGA-TCCGCTATGTTGTGTACGGCC...........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................TAGA----------------------------------------------------------------------------------------------TACTCTCTCTACCGTTGTAAG.................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GAAGAACACTCGGTGA-TCCGCTATG.......................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGTGATTTTAGA----------------------------------------------------------------------------------------------TACTCTCTCTACCGT.......................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................AGAGTAGAATGAGGTT-----------------------------------------------------------------------------------------GC.....................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................GAAGAACACTCGGTGA-TCCGC...........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................TGTACGGCCTAAAC---------ATCGA-------------------------------------------------------.................................................................................................................................................................................................................................................................................................	19	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CTACAGCAGCAGCAACAACAGCAGCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AGCAGCAGCAACAACAGCAGCTGCAG-------------------------------------------------------------------------CAGCAACAACTGCA-GCAGCAACTGCAACAACAGCAGC---TGCAACTGCAA---CA------GCAGCTGCAACTGCAACAG-----------CAGCTGCAAC---------TGCAACAGCAGCAG--------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................................................................................................................TGCAACAACAGCAGC---TGCA.........................................................................................	19	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................CAACAACAGCAGCTGCAG-------------------------------------------------------------------------CA....................................................................................................................................	20	7	0.14	1	0	0	0	0	1	0	0
............CAACAACAGCAGCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AGCA.....................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................................AACAGCAGCTGCAG-------------------------------------------------------------------------CAGCA.................................................................................................................................	19	13	0.08	1	0	0	0	1	0	0	0
................AACAGCAGCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AGCAGCA..................................................................................................................................................................................................................................	19	13	0.08	1	0	0	0	1	0	0	0
..........................G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AGCAGCAGCAACAACAGCAGC....................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0

droYak3

TACAGATGAAAAAGATCGCTTCACTTGGCAACATTGATGCACGTTCAGTTA-TCCGCTATGTTGTTGACGGCTTGAAC---------ATGAG-------------------------------------------------------AAGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAGTTGCAAGTCTTACAAAGAACTACAGGAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
TACAGATGAAAAAGATCGCTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	2.82	31	0	21	10	0	0	0	0	0	0	0	0
.........................................CGTTCAGTTA-TCCGCTATGTTGTTGA................................................................................................................................................................................................................................................................................................................................................................................	26	12	1.42	17	0	3	0	0	0	0	0	0	0	0	14
.............................................................................................................................................................................................................................................................................TGCAAGTCTTACAAAGAACTACAGGAG............................................................................................................................................	27	5	1.40	7	0	0	0	0	0	0	0	0	0	0	7
....................................................................................................................................................AGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACA.........................................................................................................................................................................	25	10	1.30	13	0	13	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTA...........................................................................................................................................................................	23	10	1.20	12	0	12	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAGT.......................................................................................................................................................................	27	10	1.10	11	0	11	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTAC..........................................................................................................................................................................	24	10	0.70	7	0	6	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................GCAAGTCTTACAAAGAACTACAGGAG............................................................................................................................................	26	5	0.60	3	0	0	0	0	0	0	0	0	0	0	3
....................................................................................................................................................AGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAG........................................................................................................................................................................	26	10	0.60	6	0	5	1	0	0	0	0	0	0	0	0
.........................................CGTTCAGTTA-TCCGCTATGTTGTT..................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.50	6	0	6	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TCTTACAAAGAACTACAGGAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------	26	7	0.29	2	0	2	0	0	0	0	0	0	0	0	0
.ACAGATGAAAAAGATCGCTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.27	3	0	3	0	0	0	0	0	0	0	0	0
.........................................CGTTCAGTTA-TCCGCTATGTTGTTGAC...............................................................................................................................................................................................................................................................................................................................................................................	27	12	0.25	3	1	0	0	0	0	0	0	0	0	0	2
.........................................CGTTCAGTTA-TCCGCTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................	23	12	0.25	3	0	2	0	0	0	0	1	0	0	0	0
....................................................TCCGCTATGTTGTTGACGGCTTGAAC---------A............................................................................................................................................................................................................................................................................................................................................................	27	9	0.22	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................TGCAAGTCTTACAAAGAACTACAGG..............................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACA.........................................................................................................................................................................	24	10	0.20	2	0	2	0	0	0	0	0	0	0	0	0
.........................TGGCAACATTGATGCACGTTCAGT...................................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.18	2	0	0	2	0	0	0	0	0	0	0	0
..CAGATGAAAAAGATCGCTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	11	0.18	2	0	2	0	0	0	0	0	0	0	0	0
TACAGATGAAAAAGATCGCTTCA.............................................................................................................................................................................................................................................................................................................................................................................................................................	23	11	0.18	2	0	1	0	0	0	0	1	0	0	0	0
.........................................CGTTCAGTTA-TCCGCTATGTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................	25	12	0.17	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCTCTACAGTTGCAAGTCTTACAAAG.......................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................AAGTCTTACAAAGAACTACAGGAGCAGT........................................................................................................................................	28	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................TACTCTCTCTACAGTTGCAAGTCTTAC...........................................................................................................................................................	27	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AGTCTTACAAAGAACTACAGGAGCAG.........................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TTACAAAGAACTACAGGAGCAGT........................................................................................................................................	23	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................TACAAAGAACTACAGGAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------	23	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAGTTGCAAGTC...............................................................................................................................................................	28	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAGTTGCAAG.................................................................................................................................................................	27	8	0.13	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................GTTGACGGCTTGAAC---------ATGAG-------------------------------------------------------A................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................ACGGCTTGAAC---------ATGAG-------------------------------------------------------AAGTGATTTCA......................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................TGACGGCTTGAAC---------ATGAG-------------------------------------------------------AAGTGATT.........................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
................................................TTA-TCCGCTATGTTGTTGACGGCTTGA........................................................................................................................................................................................................................................................................................................................................................................	27	9	0.11	1	0	1	0	0	0	0	0	0	0	0	0
.................................TTGATGCACGTTCAGTTA-TCCGCTATG.......................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCT............................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
...........................................TTCAGTTA-TCCGCTATGTTGTTGACGGC............................................................................................................................................................................................................................................................................................................................................................................	28	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
.....................................TGCACGTTCAGTTA-TCCGCTATG.......................................................................................................................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAGC.......................................................................................................................................................................	27	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0
......................................GCACGTTCAGTTA-TCCGCTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAGG.......................................................................................................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TGCACGTTCAGTTA-TCCGCTATGTTGTT..................................................................................................................................................................................................................................................................................................................................................................................	28	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACAG........................................................................................................................................................................	24	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TGCACGTTCAGTTA-TCCGCTATGTTG....................................................................................................................................................................................................................................................................................................................................................................................	26	10	0.10	1	0	0	0	1	0	0	0	0	0	0	0
.....................................TGCACGTTCAGTTA-TCCGCTATGTTGT...................................................................................................................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TGCACGTTCAGTTA-TCCGCT..........................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................GATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTA...........................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGTGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTACATC.......................................................................................................................................................................	27	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TGATTTCAGA----------------------------------------------------------------------------------------------TACTCTCTCTA...........................................................................................................................................................................	21	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TGCACGTTCAGTTA-TCCGCTATGTT.....................................................................................................................................................................................................................................................................................................................................................................................	25	10	0.10	1	0	1	0	0	0	0	0	0	0	0	0
TACAGATGAAAAAGATCGCT................................................................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	0	0	0	0	0	1	0	0	0	0
...............TCGCTTCACTTGGCAACATTGATGCACG.........................................................................................................................................................................................................................................................................................................................................................................................................	28	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
TACAGATGAAAAAGATCGCTTCACG...........................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
.........................TGGCAACATTGATGCACGTTCAGTTA-................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
TACAGATGAAAAAGATCGCTTCACTT..........................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
TACAGATGAAAAAGATCGCTTCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0
.........................................CGTTCAGTTA-TCCGCTAT........................................................................................................................................................................................................................................................................................................................................................................................	18	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
............................................TCAGTTA-TCCGCTATGTTGTTGAC...............................................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.............GATCGCTTCACTTGGCAACATTGATG.............................................................................................................................................................................................................................................................................................................................................................................................................	26	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...............................................GTTA-TCCGCTATGTTGTTGAC...............................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........................................CGTTCAGTTA-TCCGCTATGTT.....................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
...AGATGAAAAAGATCGCTTCACTTG.........................................................................................................................................................................................................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.........AAAAGATCGCTTCACTTGGCAACATT.................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
......TGAAAAAGATCGCTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................................................	19	13	0.08	1	0	1	0	0	0	0	0	0	0	0	0
....GATGAAAAAGATCGCTTCACTTGGCA......................................................................................................................................................................................................................................................................................................................................................................................................................	26	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
.........AAAAGATCGCTTCACTTGGCAACATTGA...............................................................................................................................................................................................................................................................................................................................................................................................................	28	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0
....GATGAAAAAGATCGCTTCACTTGGCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................	28	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

AGTTGCA-------ACTGCAGCA--CCGCAA---------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAACAGCAGC------A------------------GCTATCG---------------------------------CAGCAG-------------------CAGCAGCAACAGC---------AACAGTT-GCAATTACAGCAGCAACAGCAGC---AGCAGCTACAA---CA------GCAACAGCAGCTACAGCAG-----------CAGCAACTTC---------AGCAGCAACAGCAG--------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACCT------------------------------------------------------------------------------------TAG-------------------------------------------------------CAGCAACTCCGGCAGCACTCTCAGTCTGAACCAGCTGCAGGCCCAGCTGC------AGCA---------------GCAGCAG-------------------------------------------------------------------------CAGCAACAGCAGCA-GCAACAGCAGCAGCAACTGCAGC---AGCAACAGCAACACCA---------GCAGCACCAGCAACAGTTGCTGCTGAACAACAACAAC---------AACAGCAGCAGCAG--------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAATAATGATAAATATAGCTTTACAGGGCTCAATTGACGGAGAGTCTCTCA-TTGCGTACATTGTGGATGGTTTGGAT---------ATACC-------------------------------------------------------AAGTGAGTTTAAG----------------------------------------------------------------------------------------------TTTAACTTGTACAGCTGTAAGGAGTTTCAAGAGCTAAAAGAAAAGTTCGAGATATACCAA-------CGCAAG---------------------------------------------------TGTCAA-----------TCGAACAAAC---------AAGTCAAGCA----------GC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGCAGATGAGGAAGATTGCAGCACTTGGCAGCATAGATGCACGTTCTGTAA-TACGCTACATTGTGGAAGGCCTAAAT---------CTGAG-------------------------------------------------------GAGCGATTTTAAA----------------------------------------------------------------------------------------------TACACTCTCTATAATTGCAAATCTTTTAGAGAGCTGCAGGAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGCAGATGAGGAAGACTGCTGCTCTTGGCAGCATAGATGCACGTTCTGTAA-TCCGCTACATCGTGGACGGTTTAAAC---------TTAAG-------------------------------------------------------GAGTGACTTCAAA----------------------------------------------------------------------------------------------TACACTCTCTACAGTTGCAAGTCCTTTAAAGAGCTGCAGGAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGCGGGGAA----TGGTATATTTCTTGGG-GGATTGGGGCATGGG---AGATTCTGACTTGTCGTC----------ATATCAGCAACATG-TTCCAAATAT----------ACAACAGCCGCA--------------------------ACGCATTCATG----------------------------------------------G------ACATGATCTACTCTTG---------------------------------CAACAG-------------------CAGCAGCAGCAGCAGCTCCCACAGCAGCA-GCAGCAACAGCAACAACAGCAGCAGC---AGCAGCA--------------------------------------------GCAACA---------------ACAACTT------GTGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCAGATGAAAAAGATTGCGTCACTTGGCAACATCGATGTACGTTCAGTAA-TCCGTTATGTTGTTGACGGCCTAAGC---------ATGAG-------------------------------------------------------GAGTGACTTTAGA----------------------------------------------------------------------------------------------TACTCTCTCTACTGTTGCAAAACGTACAAAGAGCTAAAGGAGCAGTA---------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAGTGACCAGCTGGGCAGGGAGGCAGAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------CAGTACAAGCTGC------AGCAGCAGCAGCAGCAGCAGCAGCGGCAGGAGCAGCTTGAGCTGCACCAGATGCAGATGCAA--------------------------------------------------------------------------------------------CA---------GATGCAGATGCAACAG-----------ATGCAGATGC---------A---ACAGATG------CAGAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................................................................................CAGCAGCAGCAGCAGCAGCAGC.................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................TGC------AGCAGCAGCAGCAGCAGCAGCAGC.................................................................................................................................................................................................................	27	14	0.07	1	0	1	0	0	0	0
............................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAGCAGCGGC..............................................................................................................................................................................................................	26	19	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................................................................CAGCAGCAGCAGCAGCGGC..............................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGCGGCA.............................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0

droBip1

TACAGATGAAGAAAATTGCAGCACTTGGCAGCATCGATGGAAGTTCTGTAA-TCCGCTACATAGTAGACGGCCTGAAC---------TTGAG-------------------------------------------------------GAGTGACTTCAAA----------------------------------------------------------------------------------------------TACACCCTGTACAATTGCAAGTCTTTCAAAGAGCTGCAGGAGCAATATGACCTATTT-------------------------------------------------------------------------------------------------------------------------GAAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAGTTGCAACTGCAACAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AACA---------------GCAGCAG-------------------------------------------------------------------------CAGCAACAGCAGCA-GCAACAGCAGCAGCAACAGCAGC---AGCAACAGCAA---CA------ATTGCAGCAGGTGCAGCAG-----------CAGCAGCAAC---------AACAGCAGCAGCAGAAACAGAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAC---------AACAGCAGCAGCAG........	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GTGCAGCAG-----------CAGCAGCAAC---------......................	19	12	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGC---AGCAACAGCAA---C..............................................................................	26	17	0.06	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AACAGCAGC---AGCAACAGCAA---C..............................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................GCA-GCAACAGCAGCAGCAACAGC...................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........GCAACAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AACA---------------GCA...................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................CA-GCAACAGCAGCAGCAACAGCAGC---A............................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
............CAACAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AACA---------------GC....................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................A-GCAACAGCAGCAGCAACAGCAGC---.............................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........GCAACAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AAC......................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................ACAGCAGCA-GCAACAGCAGC............................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................CAGCAACAGCAGCA-GCAACAGCAGCA...........................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAG-----------CAGCAGCAAC---------AACAGCAGCA............	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................AG-----------CAGCAGCAAC---------AACAGCAGCAGC..........	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................GCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AACA---------------GCAGCAG-------------------------------------------------------------------------CAGCAACAGCA...........................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................GCAG-----------CAGCAGCAAC---------AACAGCAGC.............	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................AGCAACAGCAGCA-GCAACAGCAGC............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................A-GCAACAGCAGCAGCAACAGCAGC---AGC..........................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........GCAACAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AACA---------------G.....................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CAGCAG-----------CAGCAGCAAC---------AACAGCAG..............	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................CAG-----------CAGCAGCAAC---------AACAGCAGC.............	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................C------AACA---------------GCAGCAG-------------------------------------------------------------------------CAGCAACAGC............................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............CAACAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AACA---------------......................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................CA---------------GCAGCAG-------------------------------------------------------------------------CAGCAACAGC............................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................CAGCAG-----------CAGCAGCAAC---------AACAGCAGCAGCA.........	29	20	0.05	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................AACAGCAGCA-GCAACAGCAGCA...........................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............ACAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------C------AACA---------------GCAGCA................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGC---AGCAACAGC....................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................ACA---------------GCAGCAG-------------------------------------------------------------------------CAGCAACAGCAGCA-.......................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................G-------------------------------------------------------------------------CAGCAACAGCAGCA-GCAACAGCA..............................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................AGCAG-----------CAGCAGCAAC---------AACAGCAG..............	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................A---------------GCAGCAG-------------------------------------------------------------------------CAGCAACAGCAGC.........................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAACAGCAGC---A............................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CTCCCAGCAATCTGCAAGTGCGGCACAGCTC---------------------------------------------------------------------------------------------------------------------------------------------------------CAAAAGCAGCAGC------AACAGCAGCAGCAGCAACAACAGCAGCAACAGCAGCAGCAGCAACAACAACAGCAGCAGCAA--------------------------------------------------------------------------------------------CA---------GCAGCAGCAACAGCAG-----------CAGCAACAAC---------AGCAGCA---G------CAGCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........CTGCAAGTGCGGCACAGCT......................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................GCAGC------AACAGCAGCAGCAGCA.........................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0
..................................................................................................................................................................................................AGC------AACAGCAGCAGCAGCAACA......................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0
...................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCAACA...........................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0
...........................................................................................................................................................................................................................................................AACAGCAGCAGCAA--------------------------------------------------------------------------------------------CA---------GCAGC...............................................................	21	20	0.05	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................CAGCAGCAGCAACAACAACAGCAGCA...............................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................CAGCAGCAACAACAACAGCAGC................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAAC---------AGCAGCA---G------CAGCA	23	20	0.05	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAAC---------AGCAGCA---G------CAGC.	21	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................AGCAGC------AACAGCAGCAGCAGCA.........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................AGCAGCAACAACAACAGCAG.................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droWil2

TTCATACGAAGTCAATCGCAGCAGAAGGCAATATAGATATGAAATCGGTGT-TGCGCTATATAGTAGACGGTTTGAAC---------ATGAA-------------------------------------------------------GAACGACTTAAAG----------------------------------------------------------------------------------------------ATCAACTTATATTGCGCCCAGTCATTCAGAGAGCTACGAGAAAAGTATGAAATCTATTAGCACGCAATGGAAATGGCAAAGACGGATGT----------------------------------------G-----------CCACAAAGTC---------TGCAGAAA--G------CTGTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................................................................................TCATTCAGAGAGCTACGAGAAAAGTAT......................................................................................................................................	27	2	0.50	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................GCTACGAGAAAAGTATGAAATCT...............................................................................................................................	23	2	0.50	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................TATATTGCGCCCAGTCATTCAGAGAGC....................................................................................................................................................	27	10	0.30	3	0	1	0	2	0
................................................................................................................................................................................................................................................................................CAGTCATTCAGAGAGCTACGAGA.............................................................................................................................................	23	9	0.22	2	0	2	0	0	0
...............................................................................................................................................................................................................................................................TCAACTTATATTGCGCCCAGTCAT.............................................................................................................................................................	24	12	0.17	2	0	2	0	0	0
.........................................................................TGAAC---------ATGAA-------------------------------------------------------GAACGACTTAAAG----------------------------------------------------------------------------------------------A.....................................................................................................................................................................................	24	13	0.15	2	0	2	0	0	0
.........................................................................TGAAC---------ATGAA-------------------------------------------------------GAACGACTTAAAG----------------------------------------------------------------------------------------------AT....................................................................................................................................................................................	25	13	0.15	2	0	1	0	1	0
................................................................................................................................................................................................................................................................................CAGTCATTCAGAGAGCTACGAGAAAA..........................................................................................................................................	26	9	0.11	1	0	1	0	0	0
................................................................TAGACGGTTTGAAC---------ATGAA-------------------------------------------------------GAACGACT.........................................................................................................................................................................................................................................................................................	27	10	0.10	1	0	1	0	0	0
.....................................................................GGTTTGAAC---------ATGAA-------------------------------------------------------GAACGACTTAAAG----------------------------------------------------------------------------------------------A.....................................................................................................................................................................................	28	11	0.09	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................CGCCCAGTCATTCAGAGAGCTA..................................................................................................................................................	22	11	0.09	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................TATATTGCGCCCAGTCATTCAG.........................................................................................................................................................	22	11	0.09	1	0	0	0	1	0
..........GTCAATCGCAGCAGAAGGCAATATAGA...............................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0
........................................................CTATATAGTAGACGGTTTGAAC---------AT...........................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................AACTTATATTGCGCCCAGTCATT............................................................................................................................................................	23	12	0.08	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................TCAACTTATATTGCGCCCAGTCA..............................................................................................................................................................	23	13	0.08	1	0	1	0	0	0
........................................................................TTGAAC---------ATGAA-------------------------------------------------------GAACGACTTAAAG----------------------------------------------------------------------------------------------AT....................................................................................................................................................................................	26	13	0.08	1	0	1	0	0	0
..........................................................................................................................................................TTAAAG----------------------------------------------------------------------------------------------ATCAACTTATATTGCGCCCAG.................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................TCAACTTATATTGCGCCCAGT................................................................................................................................................................	21	13	0.08	1	0	1	0	0	0
.........................AGGCAATATAGATATGAAATCGGT...................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.07	1	0	1	0	0	0
..............ATCGCAGCAGAAGGCAAT....................................................................................................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0
...........................................................................................................................................................TAAAG----------------------------------------------------------------------------------------------ATCAACTTATATTGCGCC....................................................................................................................................................................	23	15	0.07	1	0	0	0	1	0

droVir3

AACAACAAC-AACAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAACA-ACAGCAGCAGCAACAGCAGCAGCAAC---ATTTGCAACAACAACAGCAAACTCAGCAGCTGGAGAAA-----------AAGGAGGAGAAACGCCGCGC---------ACAGGAGAAGGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................................................................................................AAC---ATTTGCAACAACAACA..........................................................................	19	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAGCAGCAAC---A.........................................................................................	22	20	0.15	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AACAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCA...........................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................A-ACAGCAGCAGCAACAGCA.....................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CAACAGCAACA-ACAGCAGCAGCA...........................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................ACA-ACAGCAGCAGCAACAG.......................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CAAC-AACAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC..................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAAC.........................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AC-AACAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCA...........................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................GCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAACA-ACAGCAGCC..............................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................AGCAACA-ACAGCAGCAGCAACAGCA.....................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAACA-AC.....................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................ACAGCAACA-ACAGCAGCAGCAAC.........................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................A-ACAGCAGCAGCAACAGCAGCAGCA...............................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAACA-ACAG...................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................AACAGCAACA-ACAGCAGCA..............................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AACA-ACAGCAGCAGCAACA........................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AACAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGC............................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AAC-AACAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAAC.........................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CAACA-ACAGCAGCAGCAACAG.......................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCAAC---..........................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................CAACAGCAACA-ACAGCAGCAGC............................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAACA-ACAGCAGC...............................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AACA-ACAGCAGCAGCAACAGCAGCA..................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................A-ACAGCAGCAGCAACAGCAGC...................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....ACAAC-AACAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC..................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................ACA-ACAGCAGCAGCAACAGCA.....................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CAAC-AACAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCA...........................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................AGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAACA-ACAGCAGC...............................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAACAGCAACA-.......................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......AC-AACAGCAGCAGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACA.................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCAGCAGC................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGCAG....................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................CAGCAACA-ACAGCAGCAGCA...........................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CGCTAAACAGA----TT--TGCA-----------------------------------------------CCTTGCAT---------ATAAAGCCAAATTTACAAGCTGTAACGAAAATTGCAACGCAAATATGCAAATAACTATAGAAGCA---------------------------------AGCCCCAGCAGC------AG----------------------------------------------------------------------------------CAGCAGCAACAGCA------GCAGCAGCA-GCAGCAGCAGCAGCAA------------------------CA---------GCAGCAG---CAGCAG-----------CAGCAACAGC---------AGCAGCAGCAG------CAGGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................AG----------------------------------------------------------------------------------CAGCAGCAACAGCA------GCAGC............................................................................................................................	21	20	0.15	3	3	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGC---------AGCAGCAGCAG------CAGGC	25	10	0.10	1	0	0	0	0	1	0
.............................................................................................................................................................................................CCAGCAGC------AG----------------------------------------------------------------------------------CAGCAGCAACAGCA------GCA..............................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGCAA------------------------CA---------GCAGCAG---CAGCAG-----------C........................................	21	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................CA-GCAGCAGCAGCAGCAA------------------------CA---------GC..................................................................	22	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................GCAGCAGCAA------------------------CA---------GCAGCA..............................................................	18	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................A-GCAGCAGCAGCAGCAA------------------------CA---------GCAGCA..............................................................	25	20	0.05	1	0	0	1	0	0	0

droGri2

CACTTGCCAGTGACA--------------AA---------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAGCAGCAGTAGCAGCA------GCAGCAGCAGCAGTAGCAGCAG----------------------------------------------------CAGCAGCAGTAGCAGCAGCAGCAGCAGCA-G---------------------------------------CA---------GCAGCAGTGGCAGCAG-----------CAGCAGTGGC---------AGCAGCAGCAGCAG--------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_1031

2r:799337-799486 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-37.6	-37.5	-37.4