ID:

dsi_10269

Coordinate:

3l:16312958-16313018 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_16311738_16312957_-]; exon [3l_16311671_16312957_-]; CDS [3l_16313019_16313839_-]; exon [3l_16313019_16313839_-]; intron [3l_16312958_16313018_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------################################################## ATACAAAGGCAAATACTACTCCAAGGCAGACATTGTGGTGACCACACCAGGTGAGTTAAACAAACCGAGAGAAGCCATGTAGTTTACATTAAGTATATAATTTTCTTACAGGCCGCTTAGTTGAACATTTGCACGCCACGAAAGGGTTCTGCCTGAAGAGC ************************************************................(((((((...(((((.((......)).)))))..)))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs
.TACAAAGGCAAATACTACTCCAAGGC......................................................................................................................................	26	0	1	3.00	3	1	0	1	1
................TACTCCAAGGCAGACATTGTGGTGAC.......................................................................................................................	26	0	1	1.00	1	1	0	0	0
.TACAAAGGCAAATACTACTCCAAGGCA.....................................................................................................................................	27	0	1	1.00	1	1	0	0	0
....................................................................................................................................ACGCCACGAAAGGGTTCTGCCTGAAGA..	27	0	1	1.00	1	1	0	0	0
...............................................................................................TATAATTTTCTTTCAGG.................................................	17	1	2	1.00	2	0	0	2	0
................................................................................................................................TTGCACGCCACGAAAGGGTTCTG..........	23	0	1	1.00	1	0	1	0	0
................TACTCCAAGGCAGACATTGTGGTGACCA.....................................................................................................................	28	0	1	1.00	1	0	1	0	0
................TACTCCAAGGCTGACATTGTGG...........................................................................................................................	22	1	1	1.00	1	0	1	0	0
...................TCCAAGGCAGACATTGTGGTGACCACACC.................................................................................................................	29	0	1	1.00	1	1	0	0	0
...................................................................................................................................CAAGCCACGAAAGGG...............	15	1	8	0.13	1	0	0	0	1
.........................................................................................................TTACAGGCAGATTCGTTGA.....................................	19	3	19	0.05	1	0	1	0	0
......................................................................................................................................GCCACGAGAGTGTTCT...........	16	2	20	0.05	1	0	1	0	0

Anti-sense strand reads

TATGTTTCCGTTTATGATGAGGTTCCGTCTGTAACACCACTGGTGTGGTCCACTCAATTTGTTTGGCTCTCTTCGGTACATCAAATGTAATTCATATATTAAAAGAATGTCCGGCGAATCAACTTGTAAACGTGCGGTGCTTTCCCAAGACGGACTTCTCG ************************************************................(((((((...(((((.((......)).)))))..)))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs
................................................................................................................................AACGTGCGGCGCTCTCCC...............	18	2	2	1.00	2	2	0	0	0	0
...............................................................................................................................AAACGTGCGGCGCTCTCCC...............	19	2	1	1.00	1	1	0	0	0	0
.................................................................................................................................ACGTGCGGCGCTCTCCC...............	17	2	5	0.60	3	3	0	0	0	0
..............................................GGTCCACACAATTAGTTTG................................................................................................	19	2	2	0.50	1	0	1	0	0	0
................................................................................................................................AACGTGCGGCGCTCTCCCTA.............	20	3	3	0.33	1	1	0	0	0	0
...................................................ACTCAATTTGTTCGGGTCACT.........................................................................................	21	3	3	0.33	1	0	1	0	0	0
...................................................ACTCTATTTGTTCGGGTCTCT.........................................................................................	21	3	7	0.29	2	0	1	1	0	0
................................................................................................................................AACGTGCGGCGCTCTCCCT..............	19	3	11	0.18	2	2	0	0	0	0
................................................................................................................GGCGAACCAACTTGT..................................	15	1	11	0.09	1	0	0	0	1	0
.............................................TGGACCACTCAAATTG....................................................................................................	16	2	20	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 04:09 AM