ID:

dsi_10268

 Coordinate:

3l:19421630-19421827 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-52.6 -52.2 -52.2

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CAT)nSimple_repeatSimple_repeat+
mature
  1. 2l:18094711-18094730 -
  2. 2r:3309014-3309033 +
  3. 3l:5982966-5982985 +
  4. dsi_10268  3l:19421656-19421675 +
  5. 3r:450755-450774 -
  6. 3r:21401419-21401438 -
  7. 3r:24023561-24023580 -
star

Sense Strand Reads

TGAATAGGAAAGATCTGGCCGCGCTGGCCGAGGATGTTGTGAAAGAAGAGGTGATATTAGAAAGCTCCAGCCATCACCATCATCATCATCACCATCAGGTAGGAAAAAGGAGCAACAAACGGCTGCGTAAGGAGCGAATTTGGTTTTGGATTTCCCATTCGCTTTTCCTTTGGCGGGGTGGTTTTGGTTCCGGACAGTGTGTTTGGTTCAGGTTCTATCTAATGAATCCGAAACCGAATCTGGCTCGAAAACCGCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTGGTGGGTGG
**************************************************.............(((((..((...(((...................))).)).....))))).....(((....)))...((((..((((((((((((((((......((((........))))((((((.(((((..(((((((...))))))).)))))..))))))...))))))))))))))))...))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.....................................................................................................................................................................................................................................................................................TGGAAAGTGGGTGGTGGGTG. 20 0 1 4.00 4 4 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTGGTGGGTG. 21 0 1 2.00 2 1 1 0 0 0 0 0 0
............ATCTGGCCGCGCTGGCCGA........................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTGGTGGG... 19 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTGGTGGGTGG 22 0 1 1.00 1 0 1 0 0 0 0 0 0
............ATCTGGCCGCGCTGGCCGAGGATGTTGTG................................................................................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0
........AAAGATCTGGCCGCGCTGGCCGAGGAT....................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................TGGAAAGTGGGTGGTGGG... 18 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................ATCATCATCATCATCATCAGGTA..................................................................................................................................................................................................... 23 1 3 0.33 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................GGTTGCGGACAGTGTCT................................................................................................ 17 2 10 0.30 3 0 3 0 0 0 0 0 0
....................................................................................................................................................................................................................................CGAAACCGGATCAGGCT..................................................... 17 2 16 0.19 3 0 0 0 0 1 0 0 2
....................................................................................................................................................................................................................................................................................GTGGACAGTGGGTGGTGGG... 19 1 6 0.17 1 0 0 0 0 0 1 0 0
............................................................................CCATCATCATCATCACCATC.......................................................................................................................................................................................................... 20 0 7 0.14 1 0 1 0 0 0 0 0 0
............................CGAGGATGTAGTGAAACA............................................................................................................................................................................................................................................................ 18 2 7 0.14 1 0 0 0 0 0 0 1 0
................................................................................................CGGTAGGAGAAAGGACCAAC...................................................................................................................................................................................... 20 3 8 0.13 1 1 0 0 0 0 0 0 0
..............................................................................................................................GTAAGGAACGGATATGGTTT........................................................................................................................................................ 20 3 8 0.13 1 0 0 0 0 1 0 0 0
........AAAGATCTGGCTGCGCC................................................................................................................................................................................................................................................................................. 17 2 20 0.10 2 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GTGGACAGTGGGTGGTGGGA.. 20 2 14 0.07 1 1 0 0 0 0 0 0 0
...............................................................................TCATCATCATCATCATCAGGT...................................................................................................................................................................................................... 21 1 15 0.07 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGTATCCGAAACCGA............................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0
.................................................................................ATCATCAGCAGCATCAGGT...................................................................................................................................................................................................... 19 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

ACTTATCCTTTCTAGACCGGCGCGACCGGCTCCTACAACACTTTCTTCTCCACTATAATCTTTCGAGGTCGGTAGTGGTAGTAGTAGTAGTGGTAGTCCATCCTTTTTCCTCGTTGTTTGCCGACGCATTCCTCGCTTAAACCAAAACCTAAAGGGTAAGCGAAAAGGAAACCGCCCCACCAAAACCAAGGCCTGTCACACAAACCAAGTCCAAGATAGATTACTTAGGCTTTGGCTTAGACCGAGCTTTTGGCGAGGCGAAGCGAGACGCGTCAACACCTTTCACCCACCACCCACC
**************************************************.............(((((..((...(((...................))).)).....))))).....(((....)))...((((..((((((((((((((((......((((........))))((((((.(((((..(((((((...))))))).)))))..))))))...))))))))))))))))...))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................................................................CCAAGTCCAAGATAGATTACT......................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
............................GCTCCTACAACACTTTCT............................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0
.....................................................................CGGTAGTAGTAGTAGTAGTAGTGGTAGT......................................................................................................................................................................................................... 28 1 2 0.50 1 1 0 0 0 0 0 0
...............................................................AGAGGTCAGTAGTGATAGTAG...................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0
......................................................................................................CTTTTTACTCGTTGTGTGC................................................................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 1 0 0
................................................................................................................................................................................CCACCAAAAACAAGGC.......................................................................................................... 16 1 5 0.20 1 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................TGGGCTTTGGCTTAGACCATG.................................................... 21 3 6 0.17 1 1 0 0 0 0 0 0
............................................................................GGTAGTAGTAGTAGTG.............................................................................................................................................................................................................. 16 0 20 0.10 2 2 0 0 0 0 0 0
.........................................................................AGTGGTAGTAGTAGTAGT............................................................................................................................................................................................................... 18 0 20 0.10 2 2 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................ACGCGTCTACACCTTT............... 16 1 11 0.09 1 0 0 0 0 0 0 1
................CCGGCGGGGCCGGCTCC......................................................................................................................................................................................................................................................................... 17 2 12 0.08 1 1 0 0 0 0 0 0
......................................................................GATCGTGGTAGTAGTAGTAGTG.............................................................................................................................................................................................................. 22 2 14 0.07 1 1 0 0 0 0 0 0
...........................................................................TGGTAGTAGTAGTAGT............................................................................................................................................................................................................... 16 0 20 0.05 1 1 0 0 0 0 0 0
..............................................................................TAGTAGTAGTAGTGGTAGT......................................................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0 0
..............................................................................TAGTAGTAGTAGTGGT............................................................................................................................................................................................................ 16 0 20 0.05 1 1 0 0 0 0 0 0
........................................................................TAGTGGTAGTAGTAGT.................................................................................................................................................................................................................. 16 0 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:19421580-19421877 + dsi_10268 TGAATAG------------GAAAGATCTGGCCGCGCTGGCCGAGG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCTCCAGCCATCACCATCATCATCAT------------CACCATCAGGTAGG--A--AAA-A----------------------GGAGCAACAAACGGCTGCG------------------------------------TAAGGAGCGAAT-TTGGTTTTGGATTTCCCATTCGCTTT-TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCGGACAGTGTGTT-----------------TGGTTCAGGTTCTA--TCTAA-TGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG
droSec2 scaffold_29:472897-473194 + TGAATAG------------GAAAGATCTGGCCGCGCTGGCCGAGG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCTCCAGCCATCACCATCATCATCAT------------CACCATCAGGTAGG--A--AAA-A----------------------GGAGCAACAAACAGATGCG------------------------------------TAAGGAGCGAAT-TTGGTTTTGGATTTCCCATTCGCTTT-TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCGGACAGTGTGTT-----------------TGGTTCAGGTTCTA--TCTAA-TGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG
dm3 chr3L:19811669-19811966 + TGAATAG------------GAAAGATCTGGCCGCGCTGGCCGAGG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCTCCAGCCATCACCATCATCATCAT------------CACCACCAGGTAAG--A--AAA-A----------------------GGAGCAACAAACGGCTGCG------------------------------------TAAGGAGCCCAT-TTGGTTTTGGATTTTCCATTCGCTTC-TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCGGACTGTGTGTT-----------------TGGTTCAGGTTCTA--TCTAT-TGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG
droEre2 scaffold_4784:19570974-19571269 + TGAATAG------------GAAAGATCTGGCCGCGCTGGCCGAGG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCCAGCCATCACCATCATCATCAT------------CACCATCAGGTAAG--A--AAA-A----------------------GGAGCAACAAACTGCTGCA------------------------------------TAAGGCGGACAT-TTGGTTGTGGCTTTCCCATTCGCTTT-TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCAGACTCTGT-------------------GTGGTTCAGGTTCTA--TCTAT-TGAATCCG------AAA------CTG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG
droYak3 3L:20751002-20751296 - TGAATAG------------GAAAGATCTGGCCGCGCTGGCCGAGG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCCAGCCATCACCATCATCATCAT------------CACCATCAGGTAGG--A--AAA-A----------------------GGAGCAACAAACTG-TGCA------------------------------------TAAGGCGCCCGT-TTGGTTGTGGCTTTCCCATTTGCTTT-TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCAGACTATGT-------------------GTGGTTCAGGTTCTA--TCTAT-TGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG
droEug1 scf7180000409466:5114143-5114415 - TGA---G------------GAAAGATCTGGCCGCGCTGGCCGATG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCATCAGGTAA-------AA-A----------------------GGAGCAACAAACG-CTGCGCCT--------------------------------------------T-TTCGTTTTGG------------CTTTGGGC----TTTGGCGGGGTGG--------------------------CT---------------------TTGGTTCCAGACCGT---------------------GTGGTTCAGATTCTACAT--ATCTGGATCCG------AAA------TCG-------------------------------------------------------AATCTAGCTCGA-AAACCAACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG
droBia1 scf7180000302193:5853352-5853666 - TGAACAG------------GAAAGATCTGGCCGCGCTGGCCGATG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCATCAGGTAGGGTA-AA-CCAAAAACCAAATACCAAGTGGTAATGTGCAACAAACG-AGGCGCCT--------------------------------------------TTTCCGTT-------CCCCA------TT-TCCCGTGTTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCAGACCGTTT-------------------GTGGTTCAGGTTCTA--C--ATCTGAACCTGAATCCGAATCCGAAATAG-------------------------------------------------------AATCTGGCTCGC-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG
droTak1 scf7180000415254:752490-752729 - TGAACAG------------GAAAGATCTGGCCGCGCTGGCCGATG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCATCAGGTAGG--AGGAAA-A----------------------G----------------CGCCT--------------------------------------------TTT------------------------T-CGC----TTTGGCGGGGTGGT-------------------------TT---------------------TTGGTTCCAGACTGA-----------------------------------A--TCT----GAATCTGAATCCGAAT------CCG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GTT-GGGTGG
droEle1 scf7180000491193:4095768-4096064 + TGAACAG------------GAAAGACCTGGCCGCGCTGGCCGATG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCATCAGGTAA-------AA-A----------------------GGAGCAACAAACG-AGGTGCAT--------------------------------------------T-TTGG------------------CGCT-GGC----TTTGGCGGGGTGGTT-TG-----GAATG--CT--TTTGGTT---------------------TTGGTTCCAGACTGT----TCAACTGTTCAACTGTTCAGGTTCAGGTTCTG--T--ATGTGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGACAA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--TGGGCG
droRho1 scf7180000773422:108722-108986 - TGAACAG------------GAAAGATCTGGCCGCGCTGGCCGATG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCATCAGGTAA-------AA-A----------------------GGAGCAACAAACG-AGGCGCCT--------------------------------------------T-TTGG------------------CTCT-GGC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCAGACTGT----T----------------CAGGTTCAGGTTCTA--T--ATGTGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGACAA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG
droFic1 scf7180000454113:2485451-2485731 - TGAACAG------------GAAAGATTTGGCCGCGCTGGCCGATG---------AGGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCAACATCATCAT---CATCATCAGCACCATCAGGTAA-------AG-A----------------------GGAGCAACAAACG-AGGCGCCT--------------------------------------------TTTTTG-----C------------CTTT-GCC----TGTAGCGGGGTGGC-------------------------TT---------------------TTGGTTCCAGTCTGT----T--------------TTGTGGTTCAGGTTCTA--T--ATCTGAATCCGAA----AAA------CCG-------------------------------------------------------AATCTGGCTCGAAAA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG
droKik1 scf7180000302391:664144-664496 - TGAATAG------------GAAAGACTTGGCCGCGCTGGCCGACG---------ACGTTGTGAAAGAAGAGGTGATATTGGAGAGTCCGGGCCATCACCATCATCATCATCAGCATCACCAGCATCATCAGGTAA--------A-A----------------------GGAGCAACAAACG-AGGCGCCAGGCTCTTTTGGCGGGGTGTCGGCGGAGGCTGTGCAAGGCG------------------------------------------------------------------------AGCGTGGTTCCCAGAGTTTGGTTCGGTTCCCTGGTTCCT-----------------------------------GGTTCTGAGTC-CT-CGAACACG------AATTCGA-ATCG-------------------------------------------------------AAACTGGCT-----------CT-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGCGGTTGGTTGTGTACGAGTGTGTGTGTGTGTGTGTGTGAGTGTTTCTGTGCGAGT--GGGTGG
droAna3 scaffold_13337:19436596-19436852 - dan_2726 TGAATAG------------GAAAGATCTAGCCGCGCTGACCGACGACGTGCGCGACGTTGTGAAGGAAGAGGTGATACTAGAGAGTCCGGGCCATCACCACAA------T------------CACCATCAGGTAAG--G--AAA----------------------------CAACA-----------------------------------------------------------------------------------TT-GGC----ATTGGCGGGGTGACTGTGCGAACGAATG--CGAGTGCGGTT---------------------CTGGTTCCAGGCT----------------------------------TCG----GTAA-TGGAGCTG------GAG------CTG-------------------------------------------------------GATCTGGATCGG-AG----TGT-GCTCCGCTTTGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GTTGGGGTGA
droBip1 scf7180000396360:632311-632561 - TGAATAG------------GAAAGATCTTGCCGCGCTGACCGACGACGTGCGCGACGTTGTAAAGGAAGAGGTGATACTAGAGAGTCCGGGCCATCACCACAA------T------------CACCATCAGGTAAG--G--AAA----------------------------CAACA-----------------------------------------------------------------------------------TT-GGC----ATTGGCGGGGTGACTGTGCGAACGAACGGTCGAGCACGGTT---------------------CTGGTTCCAGGCT----------------------------------TCG----GCA-------ATG------GAG------CTG-------------------------------------------------------GATCTGGATCGG-AG----TGT-GCTCCGCTTTGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--TGGGGG
dp5 XR_group6:5934694-5935007 + dps_3069 TAAGCAGGATACGTGAAGTGAAAGACTTGGCCG---------ACGATGTGCGCGATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCACCAGGTAAT--G-AA-ACAGAAACAAAATTT--------------------------------G--TCTCTTGGCGG-------------------TAA---------------------------------------------------GGGTGG--------------------------AT---------------------GTGGCT------------------------------GTGGCTGTGTCTGTG--C--ATGTGACTCCG------GAT------CCGAATGTGGTTCATTCTGATTCTGGTTCTGGCTCCTCGCGCTCTGCCAC------TGCCACTGGCT-----------CCGTCTCTGCTCTGCTCTGCGCAGTAGTGAAAAGTCTGTC----------CATGTGTGCGTGC--------------------------AT--GTGTGG
droPer2 scaffold_47:434752-435071 + TAAGCAGGATACGTGAAGTGAAAGACTTGGCCG---------ACGATGTGCGCGATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCACCAGGTAAT--G-AA-ACAGAAACAAAATTT--------------------------------G--TCTCTTGGCGG-------------------TAA---------------------------------------------------GGGTGG--------------------------AT---------------------GTGGCT------------------------------GTGGCTGTGTCTGTG--C--ATGTGACTCCG------GAT------CCGAATGTGGTTCATTCTGATTCTGGTTCTGGCTCCTCGCGCTCTGCCACTGCCACTGCCACTGGCT-----------CCGTCTCTGCTCTGCTCTGCGCAGTAGTGAAAAGTCTGTC----------CATGTGTGCGTGC--------------------------AT--GTGTGG
droWil2 scf2_1100000004511:2772126-2772240 - TGAGCAGGATACGCGAAGTGAAAGATTTGACGGCACTGGCCGACG---------ATGTGGTAAAAGAGGAGGTGATTCTCGAAAGTCCACAGCATCATCATCAAACACAA---CATCAT---CAGCATCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:22914534-22914633 - TGAGCAGAATACGTGAAGTGAAAGATTTGGCCGCATTAAACGACGACGTGCGCGATGTTGTGAAAGAAGAGGTCACATTAGAGA---------ATCACCATCATCATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:17530061-17530160 - TGAGCAGAATACGTGAAGTGAAAGATTTGGCCGCATTAACCGACGACGTGCGCGATGTTGTGAAAGAAGAGGTCACATTAGAGA---------ATCACCATCATCATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:18186654-18186753 - TGAGCAGAATACGTGAAGTGAAAGATTTGGCCGCATTACCCGACGACGTGCGCGATGTTGTGAAAGAAGAGGTCATATTAGAGA---------ATCACCATCATCATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGAATAG------------GAAAGATCTGGCCGCGCTGGCCGAGG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCTCCAGCCATCACCATCATCATCAT------------CACCATCAGGTAGG--A--AAA-A----------------------GGAGCAACAAACGGCTGCG------------------------------------TAAGGAGCGAAT-TTGGTTTTGGATTTCCCATTCGCTTT-TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCGGACAGTGTGTT-----------------TGGTTCAGGTTCTA--TCTAA-TGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGTGGGTG-------------------------------------------------GT--GGGTG.2014.00400000000000004000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGTG.2112.00200000000001001000
........................ATCTGGCCGCGCTGGCCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGG...1911.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG2211.00100000000001000000
........................ATCTGGCCGCGCTGGCCGAGG---------ATGTTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100010000000000000
....................AAAGATCTGGCCGCGCTGGCCGAGG---------AT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGTGGGTG-------------------------------------------------GT--GGG...1811.00100010000000000000
.................................................................................................CCATCATCATCAT------------CACCATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.14100000000001000000
droSec2
TGAATAG------------GAAAGATCTGGCCGCGCTGGCCGAGG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCTCCAGCCATCACCATCATCATCAT------------CACCATCAGGTAGG--A--AAA-A----------------------GGAGCAACAAACAGATGCG------------------------------------TAAGGAGCGAAT-TTGGTTTTGGATTTCCCATTCGCTTT-TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCGGACAGTGTGTT-----------------TGGTTCAGGTTCTA--TCTAA-TGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGG...1916.0060204
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGT..2014.0040004
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG2213.0031200
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGTG.2112.0020101
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG2111.0011000
dm3
TGAATAG------------GAAAGATCTGGCCGCGCTGGCCGAGG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCTCCAGCCATCACCATCATCATCAT------------CACCACCAGGTAAG--A--AAA-A----------------------GGAGCAACAAACGGCTGCG------------------------------------TAAGGAGCCCAT-TTGGTTTTGGATTTTCCATTCGCTTC-TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCGGACTGTGTGTT-----------------TGGTTCAGGTTCTA--TCTAT-TGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGG...192120.00240000000000000000000000000000000000000011100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011413110000000000001000000000000000000000000010000001000000000010000013102000011010000000000010014004000100010020000000002010000000000300302910112201152197001141500140011900124053538145110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGT..20260.00120000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100200000000000000000000000000000000000010100001000000002100000012000200000020100000000010000000200000000100000000000000000000000001001101001102002550160017600030010700131641505001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG22246.509300001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000100000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000102040000000010000000000001000000000010100000200000000274059000560000000111004632202010110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGTG.21237.00740000000000000000000001000000000000000000000000000000210000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000201004140000000000100000000000000000000000001000000100000000000000000100000000000100000000000100100100000000000000000000100000000000000001000010010104102500022020000002007731231000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGTGGGTG-------------------------------------------------GT--GGG...18221.50430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000010000000001000000000011000000100000001000000010000100000000000010000030010011001200300101000100002003401521000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGTGGGTG-------------------------------------------------GT--GGGTG.20211.50230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010000000000000000000000000011100000000000010000000000000000000000000000000000000000000000010000010000000000000000200002000551000000000
......................................GCCGAGG---------ATGTTGTGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18110.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGTGGGTG-------------------------------------------------GT--GGGT..1925.50110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001001000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010001010000000000000000012000000000000100000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG2125.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000100000001000011000000000001001000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTTGTGGAAAGTGGG.............................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000002000000000001000
...............................CGCGCTGGCCGAGG---------ATGTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....TAG------------GAAAGATCTGGCCGCGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAAGTGGGTG-------------------------------------------------GT--GG....1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000000
..............................CCGCGCTGGCCGAGG---------ATGTTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100000000000
............................................................................ATTAGAAAGCTCCAGCCATCACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AAGCTCCAGCCATCACCAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGAAAGTGGGTG-------------------------------------------------GT--GG....2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGT2222.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000003000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GG....1831.6750000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000002000110000000
.......................................................................................................................................................................................................................................................................TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGG...............................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................T---------------------TTGGTTCCGGACTGTGTGTT-----------------TGGT..........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................TAGAAAGCTCCAGCCATCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CGAGG---------ATGTTGTGAAAGAAGAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................TA--TCTAT-TGAATCCG------AAA------CCG-------------------------------------------------------AATCTG.................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................CGGGGTGG--------------------------TT---------------------TTGGTTCCGGACT......................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................GGTGATATTAGAAAGCTCCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGT..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................ATCTGGCCGCGCTGGCCGAGG---------AT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGTTGTGAAAGAAGAGGTGAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................AGG---------ATGTTGTGAAAGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCTCGA-AA----ACC-GCTCCGCTTC......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................CATCAT------------CACCACCAGGTAAG--A--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...ATAG------------GAAAGATCTGGCCGCGCTGGCCGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TATTAGAAAGCTCCAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
........................................CGAGG---------ATGTTGTGAAAGAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
................................GCGCTGGCCGAGG---------ATGTTGTGAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGAAAGTGGGTG-------------------------------------------------GT--GG....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.....AG------------GAAAGATCTGGCCGCGCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................GCTGGCCGAGG---------ATGTTGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................TGTGAAAGAAGAGGTGATATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................GTAAG--A--AAA-A----------------------GGAGCAACAAACGGC........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----ACC-GCTCCGCTTCGCTCTGC...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....AG------------GAAAGATCTGGCCGCGCTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGAAAGTGGGTG-------------------------------------------------GT--G.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................TGGCCGCGCTGGCCGAGG---------ATG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAAGTGGGTG-------------------------------------------------GT--GGG...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................G---------ATGTTGTGAAAGAAGAGGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................AT-TGAATCCG------AAA------CCG-------------------------------------------------------AATCTG.................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.............................................................................................................................................AAA-A----------------------GGAGCAACAAACGGCTG......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................GCTTC-TCC----TTTGGCGGGGTGG--------------------------..........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................AGAAAGCTCCAGCCATCAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................G---------ATGTTGTGAAAGAAGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................CGGCTGCG------------------------------------TAAGGAGCCCAT-T..................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................CTAT-TGAATCCG------AAA------CCG-------------------------------------------------------AAT....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TGTTGTGAAAGAAGAGGTGATAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................ATCTGGCCGCGCTGGCCGAGG---------ATGTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGG...2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTGGAAAGTGGGTG-------------------------------------------------G.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAAAGTGGGTG-------------------------------------------------GT--GGGT..2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................................G--------------------------TT---------------------TTGGTTCCGGACTGTGTG.................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................CTGGCCGCGCTGGCCGAGG---------ATGTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................TTAGAAAGCTCCAGCCATCACCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................CTGGCCGAGG---------ATGTTGTGAAAGAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGTGGGTG-------------------------------------------------GT--GGGTGT2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................GG---------ATGTTGTGAAAGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................CCATCATCATCAT------------CACCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18190.3770000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................CATCACCATCATCATCAT------------CACCAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2430.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGA..2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
droEre2
TGAATAG------------GAAAGATCTGGCCGCGCTGGCCGAGG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCCAGCCATCACCATCATCATCAT------------CACCATCAGGTAAG--A--AAA-A----------------------GGAGCAACAAACTGCTGCA------------------------------------TAAGGCGGACAT-TTGGTTGTGGCTTTCCCATTCGCTTT-TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCAGACTCTGT-------------------GTGGTTCAGGTTCTA--TCTAT-TGAATCCG------AAA------CTG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGTG.2121.5030010020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG2221.0021000100
..............................................................................................................................................................................................................................................................................................................................................GGTTCCAGACTCTGT-------------------GTGC...........................................................................................................................................................................................................................1911.0010100000
..............................................................................................................................................................................................................................................................................................................................................GGTTCCAGACTCTGT-------------------GTGGTTCAGG.....................................................................................................................................................................................................................2511.0010010000
............................................................................................................................................................................................................................................................................................................................................................................................................CCG------AAA------CTG-------------------------------------------------------AATCTGGCTCGA-A.........................................................................................................2211.0010000100
............................................................................................................................................................................................................................................................................................................................................................................................................CCG------AAA------CTG-------------------------------------------------------AATCTGGCTCGA-AA----....................................................................................................2311.0011000000
..........................CTGGCCGCGCTGGCCGAGG---------ATGTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCGCTTCGCTCTGCGCA............................................................................2011.0010000010
........................................................................................................................................................................................................................................................................................TGG--------------------------TT---------------------TTGGTTCCAGACTCTGT-------------------GTGG...........................................................................................................................................................................................................................2611.0011000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGG...1930.6721000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGT..2020.5010000010
droYak3
TGAATAG------------GAAAGATCTGGCCGCGCTGGCCGAGG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCCAGCCATCACCATCATCATCAT------------CACCATCAGGTAGG--A--AAA-A----------------------GGAGCAACAAACTG-TGCA------------------------------------TAAGGCGCCCGT-TTGGTTGTGGCTTTCCCATTTGCTTT-TCC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCAGACTATGT-------------------GTGGTTCAGGTTCTA--TCTAT-TGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGG2212.00201000100000
.....................................GGCCGAGG---------ATGTTGTGAAAGAAGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000000002
......................................................ATGTTGTGAAAGAAGAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
............................................G---------ATGTTGTGAAAGAAGAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
TGA---G------------GAAAGATCTGGCCGCGCTGGCCGATG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCATCAGGTAA-------AA-A----------------------GGAGCAACAAACG-CTGCGCCT--------------------------------------------T-TTCGTTTTGG------------CTTTGGGC----TTTGGCGGGGTGG--------------------------CT---------------------TTGGTTCCAGACCGT---------------------GTGGTTCAGATTCTACAT--ATCTGGATCCG------AAA------TCG-------------------------------------------------------AATCTAGCTCGA-AAACCAACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGGSizeHit CountTotal NormTotal
No Reads
droBia1
TGAACAG------------GAAAGATCTGGCCGCGCTGGCCGATG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCATCAGGTAGGGTA-AA-CCAAAAACCAAATACCAAGTGGTAATGTGCAACAAACG-AGGCGCCT--------------------------------------------TTTCCGTT-------CCCCA------TT-TCCCGTGTTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCAGACCGTTT-------------------GTGGTTCAGGTTCTA--C--ATCTGAACCTGAATCCGAATCCGAAATAG-------------------------------------------------------AATCTGGCTCGC-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGGSizeHit CountTotal NormTotal
No Reads
droTak1
TGAACAG------------GAAAGATCTGGCCGCGCTGGCCGATG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCATCAGGTAGG--AGGAAA-A----------------------G----------------CGCCT--------------------------------------------TTT------------------------T-CGC----TTTGGCGGGGTGGT-------------------------TT---------------------TTGGTTCCAGACTGA-----------------------------------A--TCT----GAATCTGAATCCGAAT------CCG-------------------------------------------------------AATCTGGCTCGA-AA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GTT-GGGTGGSizeHit CountTotal NormTotal
No Reads
droEle1
TGAACAG------------GAAAGACCTGGCCGCGCTGGCCGATG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCATCAGGTAA-------AA-A----------------------GGAGCAACAAACG-AGGTGCAT--------------------------------------------T-TTGG------------------CGCT-GGC----TTTGGCGGGGTGGTT-TG-----GAATG--CT--TTTGGTT---------------------TTGGTTCCAGACTGT----TCAACTGTTCAACTGTTCAGGTTCAGGTTCTG--T--ATGTGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGACAA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--TGGGCGSizeHit CountTotal NormTotal
No Reads
droRho1
TGAACAG------------GAAAGATCTGGCCGCGCTGGCCGATG---------ATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCATCAGGTAA-------AA-A----------------------GGAGCAACAAACG-AGGCGCCT--------------------------------------------T-TTGG------------------CTCT-GGC----TTTGGCGGGGTGG--------------------------TT---------------------TTGGTTCCAGACTGT----T----------------CAGGTTCAGGTTCTA--T--ATGTGAATCCG------AAA------CCG-------------------------------------------------------AATCTGGCTCGACAA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGGSizeHit CountTotal NormTotal
No Reads
droFic1
TGAACAG------------GAAAGATTTGGCCGCGCTGGCCGATG---------AGGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCAACATCATCAT---CATCATCAGCACCATCAGGTAA-------AG-A----------------------GGAGCAACAAACG-AGGCGCCT--------------------------------------------TTTTTG-----C------------CTTT-GCC----TGTAGCGGGGTGGC-------------------------TT---------------------TTGGTTCCAGTCTGT----T--------------TTGTGGTTCAGGTTCTA--T--ATCTGAATCCGAA----AAA------CCG-------------------------------------------------------AATCTGGCTCGAAAA----ACC-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--GGGTGGSizeHit CountTotal NormTotal
No Reads
droKik1
TGAATAG------------GAAAGACTTGGCCGCGCTGGCCGACG---------ACGTTGTGAAAGAAGAGGTGATATTGGAGAGTCCGGGCCATCACCATCATCATCATCAGCATCACCAGCATCATCAGGTAA--------A-A----------------------GGAGCAACAAACG-AGGCGCCAGGCTCTTTTGGCGGGGTGTCGGCGGAGGCTGTGCAAGGCG------------------------------------------------------------------------AGCGTGGTTCCCAGAGTTTGGTTCGGTTCCCTGGTTCCT-----------------------------------GGTTCTGAGTC-CT-CGAACACG------AATTCGA-ATCG-------------------------------------------------------AAACTGGCT-----------CT-GCTCCGCTTCGCTCTGCGCAGTTGTGGAAAGTGCGGTTGGTTGTGTACGAGTGTGTGTGTGTGTGTGTGTGAGTGTTTCTGTGCGAGT--GGGTGGSizeHit CountTotal NormTotal
No Reads
droAna3
TGAATAG------------GAAAGATCTAGCCGCGCTGACCGACGACGTGCGCGACGTTGTGAAGGAAGAGGTGATACTAGAGAGTCCGGGCCATCACCACAA------T------------CACCATCAGGTAAG--G--AAA----------------------------CAACA-----------------------------------------------------------------------------------TT-GGC----ATTGGCGGGGTGACTGTGCGAACGAATG--CGAGTGCGGTT---------------------CTGGTTCCAGGCT----------------------------------TCG----GTAA-TGGAGCTG------GAG------CTG-------------------------------------------------------GATCTGGATCGG-AG----TGT-GCTCCGCTTTGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GTTGGGGTGASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GTTGGGGTG.2315.005000014
...................................................................................................................................GTAAG--G--AAA----------------------------CAACA-----------------------------------------------------------------------------------TT-GGC----ATT..............................................................................................................................................................................................................................................................................................................................2212.002200000
.............................................................................................................................................................................AACA-----------------------------------------------------------------------------------TT-GGC----ATTGGCGGGGC......................................................................................................................................................................................................................................................................................................................2011.001010000
......................................................ACGTTGTGAAGGAAGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...............................................................................AGAGAGTCCGGGCCATCACCACA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................................................GTGAAGGAAGAGGTGATACTAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
....................................................................GAGGTGATACTAGAGAGTCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GTTGGGGT..2211.001000010
......................................................ACGTTGTGAAGGAAGAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
.................................................................GAAGAGGTGATACTAGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAAAGTGGGTG-------------------------------------------------GTTGGGGT..2111.001000001
....................................................................................GTCCGGGCCATCACCACAA------T------------CACC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................G------GAG------CTG-------------------------------------------------------GATCTGGATCGG-AG----....................................................................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GTTGGG....2011.001000001
.........................................................................GATACTAGAGAGTCCGGGCCATCACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAAAGTGGGTG-------------------------------------------------GTTGGGG...2111.001000001
droBip1
TGAATAG------------GAAAGATCTTGCCGCGCTGACCGACGACGTGCGCGACGTTGTAAAGGAAGAGGTGATACTAGAGAGTCCGGGCCATCACCACAA------T------------CACCATCAGGTAAG--G--AAA----------------------------CAACA-----------------------------------------------------------------------------------TT-GGC----ATTGGCGGGGTGACTGTGCGAACGAACGGTCGAGCACGGTT---------------------CTGGTTCCAGGCT----------------------------------TCG----GCA-------ATG------GAG------CTG-------------------------------------------------------GATCTGGATCGG-AG----TGT-GCTCCGCTTTGCTCTGCGCAGTTGTGGAAAGTGGGTG-------------------------------------------------GT--TGGGGGSizeHit CountTotal NormTotal
No Reads
dp5
TAAGCAGGATACGTGAAGTGAAAGACTTGGCCG---------ACGATGTGCGCGATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCACCAGGTAAT--G-AA-ACAGAAACAAAATTT--------------------------------G--TCTCTTGGCGG-------------------TAA---------------------------------------------------GGGTGG--------------------------AT---------------------GTGGCT------------------------------GTGGCTGTGTCTGTG--C--ATGTGACTCCG------GAT------CCGAATGTGGTTCATTCTGATTCTGGTTCTGGCTCCTCGCGCTCTGCCAC------TGCCACTGGCT-----------CCGTCTCTGCTCTGCTCTGCGCAGTAGTGAAAAGTCTGTC----------CATGTGTGCGTGC--------------------------AT--GTGTGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................ACTCCG------GAT------CCGAATGTGGTT.....................................................................................................................................................................2111.0010100000000
.................................................GCGCGATGTTGTGAAAGAAGAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................................................................................................................................................................................G-------------------TAA---------------------------------------------------GGGTGG--------------------------AT---------------------GTGGCT------------------------------G..............................................................................................................................................................................................................................1911.0010000010000
......................................................ATGTTGTGAAAGAAGAGGTGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCATTCTGATTCTGGTTC....................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................G-------------------TAA---------------------------------------------------GGGTGG--------------------------AT---------------------GTGGCT------------------------------GTG............................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................TGGCGG-------------------TAA---------------------------------------------------GGGTGG--------------------------AG---------------------A..................................................................................................................................................................................................................................................................1860.5030300000000
droPer2
TAAGCAGGATACGTGAAGTGAAAGACTTGGCCG---------ACGATGTGCGCGATGTTGTGAAAGAAGAGGTGATATTAGAAAGCCCGGGCCATCACCATCATCATCAT------------CACCACCAGGTAAT--G-AA-ACAGAAACAAAATTT--------------------------------G--TCTCTTGGCGG-------------------TAA---------------------------------------------------GGGTGG--------------------------AT---------------------GTGGCT------------------------------GTGGCTGTGTCTGTG--C--ATGTGACTCCG------GAT------CCGAATGTGGTTCATTCTGATTCTGGTTCTGGCTCCTCGCGCTCTGCCACTGCCACTGCCACTGGCT-----------CCGTCTCTGCTCTGCTCTGCGCAGTAGTGAAAAGTCTGTC----------CATGTGTGCGTGC--------------------------AT--GTGTGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................G---------ACGATGTGCGCGATGTTGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...........................................CGATGTGCGCGATGTTGTGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
droWil2
TGAGCAGGATACGCGAAGTGAAAGATTTGACGGCACTGGCCGACG---------ATGTGGTAAAAGAGGAGGTGATTCTCGAAAGTCCACAGCATCATCATCAAACACAA---CATCAT---CAGCATCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
TGAGCAGGATACGCGAAGTGAAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...................................CTGGCCGACG---------ATGTGGTAAAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
......................................GCCGACG---------ATGTGGTAAAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
droVir3
TGAGCAGAATACGTGAAGTGAAAGATTTGGCCGCATTAAACGACGACGTGCGCGATGTTGTGAAAGAAGAGGTCACATTAGAGA---------ATCACCATCATCATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................TGTGAAAGAAGAGGTCACATTAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
...................GAAAGATTTGGCCGCATTAAACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000010000000000000000000000000000000000000000000000000
...........................................................GTGAAAGAAGAGGTCACAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
.....................................................................AGGTCACATTAGAGA---------ATCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000010000000000000000000000000000
..................................ATTAAACGACGACGTGCGCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
......................................AACGACGACGTGCGCGATGTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
........ATACGTGAAGTGAAAGATTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000010000000000000000000000000000000000000000000000000
.....AGAATACGTGAAGTGAAAGATTTGGCCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000010000
droMoj3
TGAGCAGAATACGTGAAGTGAAAGATTTGGCCGCATTAACCGACGACGTGCGCGATGTTGTGAAAGAAGAGGTCACATTAGAGA---------ATCACCATCATCATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................GGTCACATTAGAGA---------ATCACC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
TGAGCAGAATACGTGAAGTGAAAGATTTGGCCGCATTACCCGACGACGTGCGCGATGTTGTGAAAGAAGAGGTCATATTAGAGA---------ATCACCATCATCATCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:48 PM