ID:

dsi_10262

 Coordinate:

3l:7692383-7692532 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.3 -16.2 -16.2

Flybase annnotation

five_prime_UTR [3l_7692323_7692382_+]; exon [3l_7692323_7692382_+]; intron [3l_7692383_7692864_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCACCTCGGCCGGGAAAAGTCGCGCGAATTACAAGAAGCAGCAAACTGTTGAATAGTTGAAAAACAAGCTATTTATTAGCAGAACAATATTTCTGAATATACAATAACAACAGTACGCAGTAGAAAATCAAACAACAATTCAACGAATTAATATTGCCCAATTTTTCTGGATTTTAGTACAGTAAAGCTCAACAAATCGGACAGCAAAAGAAATCTAGCTGCGGCTTTATGAATTTTATTTTGTGTTATG
**************************************************((((((((........)))))))).....(((((......)))))..............((.((((((((((..((.((...............)).))..))))))(((.......)))......)))).)).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M025
embryo
 SRR618934
dsim w501 ovaries
 O002
Head
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
..............................ACAAGAAGCAGCAAACTG.......................................................................................................................................................................................................... 18 0 1 10.00 10 8 1 1 0 0 0 0 0
.........................GAATTACAAGAAGCAGCAAACTG.......................................................................................................................................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0
..............AAAAGTCGCGCGAATTACAAGAAGCA.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................GTAAAGCTCAACAAATCGGACAGCA............................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................TCGGACAGCAAAAGAAATCTAGCTGC............................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0
............................TTACAAGAAGCAGCAAAC............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................TGGATTTTAGTACAGTAAA................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0
.......................................AGCAAACTGTTGAATAGT................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................ACAAGAACCAGCAAACTG.......................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0 0
..............................ACGAGAAGCAGCAAACT........................................................................................................................................................................................................... 17 1 2 0.50 1 0 0 1 0 0 0 0 0
..............................AAAAGAAGCAGCAAACTG.......................................................................................................................................................................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................AATCGGACAGCAAAA......................................... 15 0 3 0.33 1 0 0 0 0 0 0 0 1
.............................................................................................................................................AACGGATTAAGATTGCCAAAT........................................................................................ 21 3 7 0.14 1 0 0 0 0 1 0 0 0
.....................GCGCGATTTACAAGAAG.................................................................................................................................................................................................................... 17 1 7 0.14 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................CGGACAGCAAAAAAA...................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0
CTACCTCGGCCCGGAAGA........................................................................................................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0

Anti-sense strand reads

GGTGGAGCCGGCCCTTTTCAGCGCGCTTAATGTTCTTCGTCGTTTGACAACTTATCAACTTTTTGTTCGATAAATAATCGTCTTGTTATAAAGACTTATATGTTATTGTTGTCATGCGTCATCTTTTAGTTTGTTGTTAAGTTGCTTAATTATAACGGGTTAAAAAGACCTAAAATCATGTCATTTCGAGTTGTTTAGCCTGTCGTTTTCTTTAGATCGACGCCGAAATACTTAAAATAAAACACAATAC
**************************************************((((((((........)))))))).....(((((......)))))..............((.((((((((((..((.((...............)).))..))))))(((.......)))......)))).)).................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
.................................................................................................................................................................................ATGTCATTTCGAGGTG......................................................... 16 1 3 1.33 4 2 2 0 0 0 0 0
..............................................................................................................................................................................................TTGTTTAGCCTGTTGTTTTC........................................ 20 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................................................................................GATGTCATTTCGAGTT.......................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................ATGTCATTTCGAGGTGTC....................................................... 18 2 2 0.50 1 1 0 0 0 0 0 0
.................................................................................................................................................................................ATGTCATTTCGAGTTGCC....................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0
...........................................................................................................................TTTTAGATTGTTGTTAAGTTCAT........................................................................................................ 23 3 3 0.33 1 0 0 0 1 0 0 0
....................................................................................................................CGTCACGTTTTAGTTTGTCGT................................................................................................................. 21 3 15 0.27 4 0 0 0 4 0 0 0
...............................................................................................................................................................................CGATGTCATTTCGAGTTG......................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0
........CGGCCCATTCCAGCGCGCG............................................................................................................................................................................................................................... 19 3 9 0.22 2 0 0 0 2 0 0 0
...............................................................................................................................................................................................TGTTTAGTCTGTTGTTTTC........................................ 19 2 9 0.22 2 0 0 2 0 0 0 0
...............................................................................................................................................................................................TGTTTAGTCTGTCGTTTCC........................................ 19 2 5 0.20 1 0 0 0 0 1 0 0
GGTGGAGCCGGCCCTA.......................................................................................................................................................................................................................................... 16 1 6 0.17 1 0 0 0 0 1 0 0
...............................................................................................................................................................................TGATGTCAGTTCGAGTTGTC....................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0
...............................................................................................................................................................................TGATGTCATTTCGAG............................................................ 15 1 7 0.14 1 0 1 0 0 0 0 0
.................................................................................................................................................................................ATGTCATTTCGAGGT.......................................................... 15 1 7 0.14 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................AGCCTGTGGTTTTCT....................................... 15 1 12 0.08 1 0 1 0 0 0 0 0
................................................................................................................................................................................GATGTCATTTCGAGATGTC....................................................... 19 3 12 0.08 1 0 1 0 0 0 0 0
......................GCGCTTAATGATGTTC.................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................TGTTTAGCCTGTTGTCTCC........................................ 19 3 20 0.05 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 10:27 AM