ID:

dsi_10233

 Coordinate:

3r:22148138-22148287 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.0 -11.0 -10.8

Flybase annnotation

five_prime_UTR [3r_22148121_22148137_-]; CDS [3r_22148064_22148120_-]; exon [3r_22148064_22148137_-]; intron [3r_22148138_22148476_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAGAGAGCCAATTGGAAAAGCAATAACAACTTGGCTCTCATGCTAAATAAACAGTTAGCTTGTGATAAGGGAAATCAAATTACTTTGTGTGCGAAAAAAAGAGCGCTAATCTTATAGGTGGAATTACCAATAAAACAGTAAAAGCAACAAACTGCAAACGCTTTCCAGCGCCTTGACTCATTTAGTGTCAATATTTCAGAGCCTGCAGGTGACAAAATGCGTTGCAGTTTCCAAAAGGACTGCGCAGCT
*******************************************************...((((...((((((............))))))((((..........)))).....((((.((((....)))).))))........)))).........*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M053
female body
 O001
Testis
 GSM343915
embryo
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
.......................ATAACAACTTGGACCGCATG............................................................................................................................................................................................................... 20 3 5 7.80 39 33 4 2 0 0 0 0
................................................................................................................................................................................................................................GCAGTTTCCAAAAGGACTG....... 19 0 1 4.00 4 0 4 0 0 0 0 0
............................................................................................................................................................................................................................CGTTGCAGTTTCCAAAAGGAC......... 21 0 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................................................................ACAGTAAAAGCAACAAACTG............................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0
......................................................................................................................................................................................................................AAAATGCGTTGCAGTTTCCAAAAGGAC......... 27 0 1 1.00 1 0 0 0 0 0 1 0
.................................................................................................................................................................................................................................CAGTTTCCAAAAGGACTG....... 18 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................TTAGCTTGTGATAAGGGAAAT.............................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................GCAGGTGACAAAATGCGTTGCA....................... 22 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................GTTGCAGTTTCCAAAAGGACT........ 21 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................................................GGTGACAAAATGCGTTGCAGT..................... 21 0 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................................................................................................................GTCAATATTTCAGAGCCTGCAGG........................................ 23 0 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................GTTTCCAAAAGGACTGCGCAGCC 23 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGTGACAAAATGCGTTGCA....................... 20 0 1 1.00 1 0 0 0 0 1 0 0
..................................................................................CCTGTGTGTCCGAAAAAAAGA................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 0 0 1
.....................................................................................................................................................................................................CTGAGACTGCCGGTGACAAA................................. 20 3 6 0.17 1 1 0 0 0 0 0 0
........................TAACAACTTGGACCGCATG............................................................................................................................................................................................................... 19 3 20 0.15 3 2 1 0 0 0 0 0
...................................................................................................................................................................................TATTTAGTGGCAATTTTTCAGA................................................. 22 3 7 0.14 1 0 0 0 0 0 0 1
..................................................................................................................................ATAAAACAGTAAAAGAAA...................................................................................................... 18 1 10 0.10 1 0 0 0 0 1 0 0

Anti-sense strand reads

CTTCTCTCGGTTAACCTTTTCGTTATTGTTGAACCGAGAGTACGATTTATTTGTCAATCGAACACTATTCCCTTTAGTTTAATGAAACACACGCTTTTTTTCTCGCGATTAGAATATCCACCTTAATGGTTATTTTGTCATTTTCGTTGTTTGACGTTTGCGAAAGGTCGCGGAACTGAGTAAATCACAGTTATAAAGTCTCGGACGTCCACTGTTTTACGCAACGTCAAAGGTTTTCCTGACGCGTCGA
***********************************************************************************************...((((...((((((............))))))((((..........)))).....((((.((((....)))).))))........)))).........******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
..............................................TTATTTGCCAATAGAACACTTT...................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0
.............................................................................................................................................................TTGCGAAACGTCGCGG............................................................................. 16 1 3 0.67 2 2 0 0 0
.....................................................................................................................................................TTTGACGTATGCGCAAGGTCGA............................................................................... 22 3 2 0.50 1 1 0 0 0
............................................................................................................................AATTGTTATTTTGTCATT............................................................................................................ 18 1 4 0.25 1 0 0 1 0
......................................................................CCTGTAGTGTTATGAAACAC................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:22148088-22148337 - dsi_10233 GA-AGAGAGCC-AATTGGAA-AAGCAATAACAA--------------CTTGGCTCTCATG--C--TAAATAAACAGTTAG----------CTTGTGATAAGGGA-----AATCAAATTACTTTGT-GT-GCG--AAAAAAA------------GAGCGCTAATCTTATAGGTG--GAATTACCAATAAAAC--AGTAAAAGCAACAAACTGC---AAACGCTTTCCAGCG-C-CTTG-----ACTCATT--TAGTG--TCAA-----TA-TTTCAGAGCCTGCAGGTGAC---------AAAATGCGTTGCAGTTTCCAAAAGGACTGCG------------C----AGCT
droSec2 scaffold_13:1461892-1462139 - GA-AGAGAGCC-AATTGGAA-AAGCAATAACAA--------------CTTGGCTCTCATG--C--TAAATAAACAGTTAG----------CTTGTGATAAGGGA-----AATCAAATTACTTTGT-GT-GCA--AAA-AAA-------------AGCGCTAATCTTATAGGTG--GAATTACCAATAAAAC--AGTAAAAGAAACAAACTGC---AAACGCTTTCCAGCG-C-TTTG-----ACTCATT--AAGTG--CCAA-----TA-TTTCAGAGCCTGCAGGTGAC---------AAAATGCGTTGCAGTTTCCAAAAGGACTGCG------------C----AGCT
dm3 chr3R:22688383-22688629 - GC-AGAGAGCC-AATTGGAA-AAGCAATAACAA--------------CTTGGCTCTCTCG--C--AAAACAAACAGTTAG----------CTTGTGATAAGGGA-----AATTAAATTACTTTGT-GT-GCG--AAAAAAG-------------AGCGCTAATCTTA--GGTG--GAATTACCAATAAAAC--AGTAAAAGAAACAAACTGC---AAACGCTTTCCAGCG-C-TTTG-----ACTCATT--TAGTG--CCAA-----TA-TTTCAGAGCCTGCAGGTGAC---------AAAATGCGTTGCAGTTTGCAAAAGGACTGCG------------C----AGCT
droEre2 scaffold_4820:5352340-5352607 + GC-AGAGAGTC-AATCGGAA-AAGCAGAAACAA--------------CTTGGCTCTCTCT--C--AAAATAAACAGTTAGCTAG------CTGGTGATAAGGGA-----AACCAAATTGTTTTTT-GT-TGGCAAAA--AAAAAAAAAATAAAGAACGCTAATCTTAAAGGTG--GAATCACTAATAAAAC--AGTAAAAGAAACAAACTGC---AATCGGTTTCCAGCG-G-TTTG-----ACTCATT--TTGTG--CCAA-----TA-TTTCAGCGCCTGCAGGTGACG-------AAAAATGCGCTGCAGTTTGCAAAAGGACTGCG------------C----AGCT
droYak3 3R:23803291-23803554 + GC-AGAGAGCC-AATCGGAA-AAGCAATAACAA--------------CTTGGCTCTCTCT--CTTAACATAAACAGTTAG----------CTGGTGATAAGGGA-----AATCGAATTGCTTTTTTGTTGCA--AAAAGAA------AACAAGGAACGCTAATCTTAAAGGTG--GAATCACCAATAAAAC--AGTAAAAGAAACAAACTGC---AAACGCTTTCCAGCG-C-CTTG-----ACTCATT--TTGTG--ACAA-----TA-TTTCAGCGCCTGCAGGTGACCA-----AAAAAATGCGTTGCAGTTTGCACAAGGACTGCG------------C----AGCT
droEug1 scf7180000409770:140112-140362 - GC-AGAGAGCC-AATTGGAA-TTGCAATAACAA--------------CTTGGCTCTCTCT--C--AAAATAAACAGTTAA----------CTTGTGATAAGGGA-----AATCAAATTGCTTTGT-GC-GCG--AAACAAA-------------AGTGATAATCTTAAAG-GG--GAATTACTAACAA-AC--AGTTAT--AAGCAAAGTGC---AGACGGTTTCCAGTG-CGCTTG-----ACTCATT--TTGTG--TAAAATAAATA-TTTCAGAGCCTGCAGGTGAC---------AAAATGCGTTGCAGTTTGCAAAAGGACTGCG------------C----AGCT
droBia1 scf7180000302113:2953334-2953583 - GC-AGAGAGCC-GATTGGCA-CAGCAATAACAA--------------CTTGGCTCGCTCTCCC--AAAATAAACAGTTAA----------CTGGTGATAAGCGA-----AGTCGAATTGCTTTGT-GT-GCG--CTAAAAA-------------TGTGATAATCTTCGAG-GA--GCATTAGTAATAA-TC--AGTCAT--AAACAAACTGC---AGACGGTTGTCGGTG-C-TTTG-----ACTCATC--CTGTG--CCCA-----CT-TTCCAGAGCCTGCAGGTGACCA------CAAAATGCGTTGCAGTTTGCCCAAGGACTGCG------------C----AGCT
droTak1 scf7180000415286:733896-734133 - GC-AGAGAGCCGAATTGGCA-AAGCAATAACAA--------------CTTGGCTCTC--T--C--AAAATAAACAGTTAA----------CTTGTGATAAGGGA-----AATCAAATTGCTTTGT-GT-GCGCTAAAAAAT-------------ATAGATAATCTTAAAGG-GGCGAATTAGTAATAA-GC--AGTTAT--AAACAAACCGC---------T-----------TTTG-----AGTCATT--TTGTG--CCAA-----TA-TTTCAGAGCCTGCAGGTGCGGA----TAAAAAATGCGTTGCAGTTTGCAAACGGACTGCG------------C----AGCT
droEle1 scf7180000491280:726974-727208 - GC-AGAGAGCC-AATTGGAA-AGACAATAATAA--------------CTTGGCTCTCTCT--C--AAAATAAACAGTTAG----------CTTGTGATAAGAAA-----AATAAAATTTCTTTGT-GT-GCG--CAAAAAA-------------AGTGATTATCTTAA-G-GG--GAATTAGTAATA---------------AACAAACTGC---AG-GGGTTTCCAGTG-C-TTTG-----ACATTTT--TCGTG--GAAA-TA--AA-TTTTAGAGCCTGCAGGTGAC---------AAAATGCGCTGCAGTTTGCAAAAGGATTGCG------------C----AGCA
droRho1 scf7180000779166:11481-11703 + G--AGAGAGCC-AACTGGAA-CGGCAATAATAA--------------CTTGGCTCTC--T--C--AAAATAAACATTTAG----------TCTATGATAAGAAT-----AATAAAATTGCTTTGT-GT-GCA--GGAAAAA-------------AGTGATAATCTTAAAGGT-----------AAA---------------AAACAAACTGT---AG-GGGTTTGCAGTA-T-TTTG-----GCTTATT--TTGTG--GCGA-----TA-TTTCAGTGCCTGCAGGTGAC---------AAAATGCGCTGCAGTTTGCAAAAGGACTGCG------------C----AACT
droFic1 scf7180000454055:2585154-2585391 - GA--GGAAGCT-TGTTGGAA-AAGCAATAACAA--------------CTTGTCTCACTCT--C--AAAATAAACAGTTAA----------CTTGTGATAAGGGT-----AATCAAACTGCTATTA-GT-GCG--AAAAAAT-------------TGCGATAACCATAA-GACG--GAATTAGTAATA---------------AACAAACAGC---GGCTGATTTCACAGT-C-ATTG-----ACTTATT--TTGTG--CCCACTT-ATT-TTCCAGAACCTGCAGATGAC---------AAAATGCGCTGCAGCTTGCAAAAGGACTGCG------------C----AACT
droKik1 scf7180000297719:56694-56929 + GCGAGAGAGCC-AATTGGAA-AAGCAATAACAACCTGCAACAACGCACTTGGCTCTCTCT--C--AAAATAAACAGTC---------------TTGATAAGGAC-----AAT-AAAGTGCTTTGT-GT-GCG--AAA--AA-------------AGTGCCAATCTTGA-GAGG--GAATTAGTAATA---------------CACAAACC-------CTGCCTTCGGACT-C-TTCG-----A-TCATTCTTTGTG--C--------TT-CTCCAGAATCTGCAGGTGAC---------ACAATGTGCAGCAG---GGAAAAGGAT-ACG------------CCGGCGACT
droAna3 scaffold_13340:16645105-16645327 + GA--AAGAGCC-AAG--CAC-TAACAATAACAA------ATCG--CAATTGGCTC----T--C--AAAATAAACAGTTTGTGGA------CTTGTGATAAGACA-----AACAAAATTGCT------------------------------------GATAATCTCCTTG-GA--GTATTAGTAATAC--------CAT--AAACAAGGTGC---CT--AGTTTCTTGCG-G-CTTG--T--ATTCATT--CTGTG--TTTC-----TCTCTTTAGAA-CTGCAGGTGAC---------AAAATGCGCTGCAGCTCCGCTAAGGACTTCT------------C----CACC
droBip1 scf7180000396424:160984-161212 + GA--AAGAGCA-A---GGAACTAACAATAACAA------ATCG--CAATTGGCTC----T--C--AAAATAAACAGTTTATAGGT-----CTGGTGATAAGGCA-----AATAATATTGCT------------------------------------GGTAATCTGT--G-AA--GTATTAGTAATAC--------CAT--ACACAAGGTGC---TC--AGTTTCTTGCGGA-TTTCAGTTCCTTCATT--CTGTG--TTTTTT---TCTCTTTAGAA-CTGCAGGTGAA--------AAAAATGCGCTGCAGCTCCGTAAAGGATTTCC------------C----CAC-
dp5 2:4779851-4780091 + GA--GAGGC-------GCAA-CAGCA------A------ATAGCTCACTCGGCTCTCTGT--C--AAAATAAACAGTTAACAAGACGAACGTTGTGATAAGGCCAGGCCGATCAAATTGCTTTGT-GT-GCA-------AA-------------AGTGTTAATCTTTTCG-GG--GCATTACTAATAGATCCAAGTG-CAGAGACGACCAGTTATAGA---TT-------------C-----TCCCATT--TCTTGAAT--------TTCGTTTAG-----GCCGTTGACTAGTTGGGGAA------------------AATGAACTGCGAAGCGGCTCAGGA----TACG
droPer2 scaffold_19:476838-477078 + GA--GAGGC-------GCAA-CAGCA------A------ATAGCTCACTCGGCTCTCTAT--C--AAAATAAACAGTTAACAAGACGAACGTTGTGATAAGGCCAGGCCGATCAAATTGCTTTGT-GT-GCA-------AA-------------AGTGTTAATCTTTTCG-GG--GCATTACTAATAGATCCAAGTG-CAGAGACGACCAGTTATAGA---TT-------------C-----TCCCATT--TCTTGAAT--------TTCGTTTAG-----GCCGTTGACTAGTTGGGGAAAATGA------------------ACTGCAAAGCGGCTCAGGA----TACG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GA-AGAGAGCC-AATTGGAA-AAGCAATAACAA--------------CTTGGCTCTCATG--C--TAAATAAACAGTTAG----------CTTGTGATAAGGGA-----AATCAAATTACTTTGT-GT-GCG--AAAAAAA------------GAGCGCTAATCTTATAGGTG--GAATTACCAATAAAAC--AGTAAAAGCAACAAACTGC---AAACGCTTTCCAGCG-C-CTTG-----ACTCATT--TAGTG--TCAA-----TA-TTTCAGAGCCTGCAGGTGAC---------AAAATGCGTTGCAGTTTCCAAAAGGACTGCG------------C----AGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................GCAGTTTCCAAAAGGACTG.......................1914.00440000000000000000
.................................................................................................................................................................................................................................................................................................................CGTTGCAGTTTCCAAAAGGAC.........................2113.00303000000000000000
.............................................................................................................................................................................................AC--AGTAAAAGCAACAAACTG............................................................................................................................................2012.00220000000000000000
...........................................................................................................................................................................................................................................................................................................AAAATGCGTTGCAGTTTCCAAAAGGAC.........................2711.00100100000000000000
......................................................................................................................................................................................................................................................................................................................CAGTTTCCAAAAGGACTG.......................1811.00101000000000000000
............................................................................TTAG----------CTTGTGATAAGGGA-----AAT...............................................................................................................................................................................................................................................2111.00100001000000000000
.........................................................................................................................................................................................................................................................................................GCAGGTGAC---------AAAATGCGTTGCA.......................................2211.00100010000000000000
..................................................................................................................................................................................................................................................................................................................GTTGCAGTTTCCAAAAGGACT........................2111.00101000000000000000
............................................................................................................................................................................................................................................................................................GGTGAC---------AAAATGCGTTGCAGT.....................................2111.00100010000000000000
...............................................................................................................................................................................................................................................................G--TCAA-----TA-TTTCAGAGCCTGCAGG.................................................................2311.00100001000000000000
........................................................................................................................................................................................................................................................................................................................GTTTCCAAAAGGACTGCG------------C----AGCC2311.00101000000000000000
...........................................................................................................................................................................................................................................................................................AGGTGAC---------AAAATGCGTTGCA.......................................2011.00100000000000100000
droSec2
GA-AGAGAGCC-AATTGGAA-AAGCAATAACAA--------------CTTGGCTCTCATG--C--TAAATAAACAGTTAG----------CTTGTGATAAGGGA-----AATCAAATTACTTTGT-GT-GCA--AAA-AAA-------------AGCGCTAATCTTATAGGTG--GAATTACCAATAAAAC--AGTAAAAGAAACAAACTGC---AAACGCTTTCCAGCG-C-TTTG-----ACTCATT--AAGTG--CCAA-----TA-TTTCAGAGCCTGCAGGTGAC---------AAAATGCGTTGCAGTTTCCAAAAGGACTGCG------------C----AGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...................................................................AATAAACAGTTAG----------CTTGT................................................................................................................................................................................................................................................................1811.0010010
........................................................................................................................................................................................................................................................................................................................GTTTCCAAAAGGACTGCG------------C----A...2011.0010010
.......................................................................AACAGTTAG----------CTTGTGATAAGGGA-----AAT...............................................................................................................................................................................................................................................2611.0010010
...............................................................................................................................................................................................................................................................................................GAC---------AAAATGCGTTGCAGT.....................................1811.0010010
..............................................................................................................................................................................................................................................................................................................ATGCGTTGCAGTTTCCAAAAGGACT........................2511.0010010
............................................................................................................................................................................................................................................................................................GGTGAC---------AAAATGCGTTGCA.......................................1911.0010100
......................................................................AAACAGTTAG----------CTTGTGATAAGGGA-----A.................................................................................................................................................................................................................................................2511.0010100
...................................................................AATAAACAGTTAG----------CTTGTGATAAGGGA-----..................................................................................................................................................................................................................................................2711.0010100
.........................................................................CAGTTAG----------CTTGTGATAAGGGA-----AAT...............................................................................................................................................................................................................................................2411.0010010
........................................................................................................................................................................................................................................................................................TGCAGGTGAC---------AAAATGCGTTG.........................................2111.0011000
...................................................................AATAAACAGTTAG----------CTTGTGATAAGGG........................................................................................................................................................................................................................................................2611.0010010
dm3
GC-AGAGAGCC-AATTGGAA-AAGCAATAACAA--------------CTTGGCTCTCTCG--C--AAAACAAACAGTTAG----------CTTGTGATAAGGGA-----AATTAAATTACTTTGT-GT-GCG--AAAAAAG-------------AGCGCTAATCTTA--GGTG--GAATTACCAATAAAAC--AGTAAAAGAAACAAACTGC---AAACGCTTTCCAGCG-C-TTTG-----ACTCATT--TAGTG--CCAA-----TA-TTTCAGAGCCTGCAGGTGAC---------AAAATGCGTTGCAGTTTGCAAAAGGACTGCG------------C----AGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................................................................................................................................................................................................................ATGCGTTGCAGTTTGCAAAAG............................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AGGTGAC---------AAAATGCGTTGCA.......................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000002000000
GC-AGAGAGCC-AATTGGAA-AAGCAAT...................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................G--AAAAAAG-------------AGCGCTAATCTTA--GGTG--GA..............................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..............................................................................................................................................................................................................................................................TG--CCAA-----TA-TTTCAGAGCCT......................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................................................................................................................................................................................................................CTGCAGGTGAC---------AAAATGCGTTGCA.......................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GTTTGCAAAAGGACTGCG------------C----....1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................CAGAGCCTGCAGGTGAC---------AAAATGC.............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TTGT-GT-GCG--AAAAAAG-------------AG...................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................A-TTTCAGAGCCTGCAGG.................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TAAGGGA-----AATTAAATTACTTTGT-G................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ATTGGAA-AAGCAATAACAA--------------CTTGGCT.........................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..........................................................................................................................................................................................................................................................................................................................TTGCAAAAGGACTGCG------------C----A...1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GC-AGAGAGCC-AATTGGAA-A.........................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GGTGAC---------AAAATGCGTTGC........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
......................................................................AAACAGTTAG----------CTTGTGATAAGGGA-----AA................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................CCTGCAGGTGAC---------AAAATG..............................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GT-GT-GCG--AAAAAAG-------------AGCGCTA..............................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................GTG--GAATTACCAATAAAAC--AGTAAA........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GTTAG----------CTTGTGATAAGGG........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GAGCCTGCAGGTGAC---------AAAATG..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TCAGAGCCTGCAGGTGAC---------AAAATGCG............................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
..........C-AATTGGAA-AAGCAATAAC................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AATAACAA--------------CTTGGCTCTCTCG--C--..............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................G--CCAA-----TA-TTTCAGAGCCTG.....................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
........................................................................ACAGTTAG----------CTTGTGATAAGG.........................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................TCAGAGCCTGCAGGTGAC---------AAA.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................AGTTTGCAAAAGGACTGC......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................ATGCGTTGCAGTTTGCAAAAGGACTG.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TGCGTTGCAGTTTGCAAAAGGACTG.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GTTTGCAAAAGGACTGCG------------C----A...2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AACAA--------------CTTGGCTCTCTCG--C--..............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000
.............................ACAA--------------CTTGGCTCTCTCG--C--A.............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AGGTGAC---------AAAATGCGTTG.........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TAAGGGA-----AATTAAATTACTTTGT-GT-GC............................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................A-TTTCAGAGCCTGCAGGTGAC---------AAA.................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............TGGAA-AAGCAATAACAA--------------CTTGGCTCTC......................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................AAACAAACTGC---AAACGCTAGG..............................................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
droEre2
GC-AGAGAGTC-AATCGGAA-AAGCAGAAACAA--------------CTTGGCTCTCTCT--C--AAAATAAACAGTTAGCTAG------CTGGTGATAAGGGA-----AACCAAATTGTTTTTT-GT-TGGCAAAA--AAAAAAAAAATAAAGAACGCTAATCTTAAAGGTG--GAATCACTAATAAAAC--AGTAAAAGAAACAAACTGC---AATCGGTTTCCAGCG-G-TTTG-----ACTCATT--TTGTG--CCAA-----TA-TTTCAGCGCCTGCAGGTGACG-------AAAAATGCGCTGCAGTTTGCAAAAGGACTGCG------------C----AGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................GTTTGCAAAAGGACTGCG------------C----AG..2111.0011000000
.............................................................................................................................................................................................................................................................................................GTGACG-------AAAAATGCGCTGCAGTT....................................2311.0010000100
..........................................................................AGTTAGCTAG------CTGGTGATAAGGGA-----..................................................................................................................................................................................................................................................2411.0010000100
.....................................................................................................................................................................................................................................G-G-TTTG-----ACTCATT--TTGTG--CC...........................................................................................2011.0010001000
.....................................................................................................................................................................................................................................................CATT--TTGTG--CCAA-----TA-TTTCAGT..........................................................................2220.5011000000
droYak3
GC-AGAGAGCC-AATCGGAA-AAGCAATAACAA--------------CTTGGCTCTCTCT--CTTAACATAAACAGTTAG----------CTGGTGATAAGGGA-----AATCGAATTGCTTTTTTGTTGCA--AAAAGAA------AACAAGGAACGCTAATCTTAAAGGTG--GAATCACCAATAAAAC--AGTAAAAGAAACAAACTGC---AAACGCTTTCCAGCG-C-CTTG-----ACTCATT--TTGTG--ACAA-----TA-TTTCAGCGCCTGCAGGTGACCA-----AAAAAATGCGTTGCAGTTTGCACAAGGACTGCG------------C----AGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................GTTTGCACAAGGACTGCG------------C----A...2011.00100000010000
................................................................................................................................................................................................................................................................................................ACCA-----AAAAAATGCGTTGCAGT.....................................2111.00101000000000
................................................................................................................................................................................................................................................................................................................GCGTTGCAGTTTGCACAAGGA..........................2111.00101000000000
.....................................................................................................................................................................................................................................................................A-----TA-TTTCAGCGCCTGCAGGTG...............................................................2111.00101000000000
....................................................................................................................................................................................................................................................................AA-----TA-TTTCAGCGCCTGCAGGT................................................................2111.00101000000000
.......................................................................................................................................................................................................................................................................................CTGCAGGTGACCA-----AAAAAATGCGTTGCA.......................................2811.00101000000000
...........................TAACAA--------------CTTGGCTCTCTCT--CT...............................................................................................................................................................................................................................................................................................2111.00100000100000
...............................................................................................................................................................................................................................................................G--ACAA-----TA-TTTCAGCGCCTGCAGG.................................................................2311.00101000000000
...........................................................................................................................................................................................................................................................................................................AAAATGCGTTGCAGTTTGC.................................1911.00101000000000
..........................................................................................................................................................................................................................................................................................................................TTGCACAAGGACTGCG------------C----AGC.2011.00100000010000
............................................................................................................................................................................................................................................................................................GGTGACCA-----AAAAAATGCGTTGC........................................2211.00100000010000
..................................................................................................................................................................................................................................................................................................CA-----AAAAAATGCGTTGCAGTTTGCACA..............................2611.00100000010000
...........................................................................................................................................................................................................................................................................................................AAAATGCGTTGCAGTTTGCACAAGGA..........................2611.00100000010000
...................................................................................................................................................................................................................................................................................................A-----AAAAAATGCGTTGCAGTTTGC.................................2211.00101000000000
...................................................................................................................................................................................................................................................................CAA-----TA-TTTCAGCGCCTGCAGGT................................................................2211.00100000010000
........................................................................................................................................................................................................................................................................................................................GTTTGCACAAGGACTGCG------------C----AGC.2211.00100000010000
................................................................................................ATAAGGGA-----AATCGAATTGCTT.....................................................................................................................................................................................................................................2111.00101000000000
droEug1
GC-AGAGAGCC-AATTGGAA-TTGCAATAACAA--------------CTTGGCTCTCTCT--C--AAAATAAACAGTTAA----------CTTGTGATAAGGGA-----AATCAAATTGCTTTGT-GC-GCG--AAACAAA-------------AGTGATAATCTTAAAG-GG--GAATTACTAACAA-AC--AGTTAT--AAGCAAAGTGC---AGACGGTTTCCAGTG-CGCTTG-----ACTCATT--TTGTG--TAAAATAAATA-TTTCAGAGCCTGCAGGTGAC---------AAAATGCGTTGCAGTTTGCAAAAGGACTGCG------------C----AGCTSizeHit CountTotal NormTotal
No Reads
droBia1
GC-AGAGAGCC-GATTGGCA-CAGCAATAACAA--------------CTTGGCTCGCTCTCCC--AAAATAAACAGTTAA----------CTGGTGATAAGCGA-----AGTCGAATTGCTTTGT-GT-GCG--CTAAAAA-------------TGTGATAATCTTCGAG-GA--GCATTAGTAATAA-TC--AGTCAT--AAACAAACTGC---AGACGGTTGTCGGTG-C-TTTG-----ACTCATC--CTGTG--CCCA-----CT-TTCCAGAGCCTGCAGGTGACCA------CAAAATGCGTTGCAGTTTGCCCAAGGACTGCG------------C----AGCTSizeHit CountTotal NormTotal
No Reads
droTak1
GC-AGAGAGCCGAATTGGCA-AAGCAATAACAA--------------CTTGGCTCTC--T--C--AAAATAAACAGTTAA----------CTTGTGATAAGGGA-----AATCAAATTGCTTTGT-GT-GCGCTAAAAAAT-------------ATAGATAATCTTAAAGG-GGCGAATTAGTAATAA-GC--AGTTAT--AAACAAACCGC---------T-----------TTTG-----AGTCATT--TTGTG--CCAA-----TA-TTTCAGAGCCTGCAGGTGCGGA----TAAAAAATGCGTTGCAGTTTGCAAACGGACTGCG------------C----AGCTSizeHit CountTotal NormTotal
No Reads
droEle1
GC-AGAGAGCC-AATTGGAA-AGACAATAATAA--------------CTTGGCTCTCTCT--C--AAAATAAACAGTTAG----------CTTGTGATAAGAAA-----AATAAAATTTCTTTGT-GT-GCG--CAAAAAA-------------AGTGATTATCTTAA-G-GG--GAATTAGTAATA---------------AACAAACTGC---AG-GGGTTTCCAGTG-C-TTTG-----ACATTTT--TCGTG--GAAA-TA--AA-TTTTAGAGCCTGCAGGTGAC---------AAAATGCGCTGCAGTTTGCAAAAGGATTGCG------------C----AGCASizeHit CountTotal NormTotal
No Reads
droRho1
G--AGAGAGCC-AACTGGAA-CGGCAATAATAA--------------CTTGGCTCTC--T--C--AAAATAAACATTTAG----------TCTATGATAAGAAT-----AATAAAATTGCTTTGT-GT-GCA--GGAAAAA-------------AGTGATAATCTTAAAGGT-----------AAA---------------AAACAAACTGT---AG-GGGTTTGCAGTA-T-TTTG-----GCTTATT--TTGTG--GCGA-----TA-TTTCAGTGCCTGCAGGTGAC---------AAAATGCGCTGCAGTTTGCAAAAGGACTGCG------------C----AACTSizeHit CountTotal NormTotal
No Reads
droFic1
GA--GGAAGCT-TGTTGGAA-AAGCAATAACAA--------------CTTGTCTCACTCT--C--AAAATAAACAGTTAA----------CTTGTGATAAGGGT-----AATCAAACTGCTATTA-GT-GCG--AAAAAAT-------------TGCGATAACCATAA-GACG--GAATTAGTAATA---------------AACAAACAGC---GGCTGATTTCACAGT-C-ATTG-----ACTTATT--TTGTG--CCCACTT-ATT-TTCCAGAACCTGCAGATGAC---------AAAATGCGCTGCAGCTTGCAAAAGGACTGCG------------C----AACTSizeHit CountTotal NormTotal
No Reads
droKik1
GCGAGAGAGCC-AATTGGAA-AAGCAATAACAACCTGCAACAACGCACTTGGCTCTCTCT--C--AAAATAAACAGTC---------------TTGATAAGGAC-----AAT-AAAGTGCTTTGT-GT-GCG--AAA--AA-------------AGTGCCAATCTTGA-GAGG--GAATTAGTAATA---------------CACAAACC-------CTGCCTTCGGACT-C-TTCG-----A-TCATTCTTTGTG--C--------TT-CTCCAGAATCTGCAGGTGAC---------ACAATGTGCAGCAG---GGAAAAGGAT-ACG------------CCGGCGACTSizeHit CountTotal NormTotal
No Reads
droAna3
GA--AAGAGCC-AAG--CAC-TAACAATAACAA------ATCG--CAATTGGCTC----T--C--AAAATAAACAGTTTGTGGA------CTTGTGATAAGACA-----AACAAAATTGCT------------------------------------GATAATCTCCTTG-GA--GTATTAGTAATAC--------CAT--AAACAAGGTGC---CT--AGTTTCTTGCG-G-CTTG--T--ATTCATT--CTGTG--TTTC-----TCTCTTTAGAA-CTGCAGGTGAC---------AAAATGCGCTGCAGCTCCGCTAAGGACTTCT------------C----CACCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................C-----TCTCTTTAGAA-CTGCAGGT................................................................2012.002200000
...........................................................................................................................................................................................................................................................................................................AAAATGCGCTGCAGCTCCGCTAAGG...........................2511.001100000
.........................................................................................................................................................................................................................................................................................GCAGGTGAC---------AAAATGCGCTGC........................................2111.001000010
...........................................................................................................................................................................................................................................................................TCTCTTTAGAA-CTGCAGGT................................................................1911.001000010
.....................................................................................................................................................................................................................................G-G-CTTG--T--ATTCATT--CTGTG--T............................................................................................2011.001100000
.............................................................................TTGTGGA------CTTGTGATAAGACA-----..................................................................................................................................................................................................................................................2111.001000010
.........................................................................................................................................................................................................................................................................................GCAGGTGAC---------AAAATGCGC...........................................1811.001010000
............................................................................................................................................................................................................................................................................CTCTTTAGAA-CTGCAGGC................................................................1811.001010000
...........................................................................................................................................................................................................................................................................................................AAAATGCGCTGCAGCTCCGCTAA.............................2311.001100000
droBip1
GA--AAGAGCA-A---GGAACTAACAATAACAA------ATCG--CAATTGGCTC----T--C--AAAATAAACAGTTTATAGGT-----CTGGTGATAAGGCA-----AATAATATTGCT------------------------------------GGTAATCTGT--G-AA--GTATTAGTAATAC--------CAT--ACACAAGGTGC---TC--AGTTTCTTGCGGA-TTTCAGTTCCTTCATT--CTGTG--TTTTTT---TCTCTTTAGAA-CTGCAGGTGAA--------AAAAATGCGCTGCAGCTCCGTAAAGGATTTCC------------C----CAC-SizeHit CountTotal NormTotal
No Reads
dp5
GA--GAGGC-------GCAA-CAGCA------A------ATAGCTCACTCGGCTCTCTGT--C--AAAATAAACAGTTAACAAGACGAACGTTGTGATAAGGCCAGGCCGATCAAATTGCTTTGT-GT-GCA-------AA-------------AGTGTTAATCTTTTCG-GG--GCATTACTAATAGATCCAAGTG-CAGAGACGACCAGTTATAGA---TT-------------C-----TCCCATT--TCTTGAAT--------TTCGTTTAG-----GCCGTTGACTAGTTGGGGAA------------------AATGAACTGCGAAGCGGCTCAGGA----TACGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................GGAA------------------AATGAACTGCGAAGCGGCTCAGG.........2714.0040400000000
......................................................................................................................................................................................................................................................................................................TGGGGAA------------------AATGAACTGCGAAGCGGC..............2514.0040100000030
............................................................................................................................................................................................................................................................................................................A------------------AATGAACTGCGAAGCGGCTCAGG.........2413.0030300000000
....................................................................................................................................................................................................................................................................................................................................ACTGCGAAGCGGCTCAGG.........1813.0030300000000
.........................................................................................................................................................................................................................................................................................................GGAA------------------AATGAACTGCGAAGC.................1913.0030300000000
..........................................................................................................................................................................................................................................................................................................GAA------------------AATGAACTGCGAAGCGGC..............2112.0020200000000
......................................................................................................................................................................................................................................................................................................TGGGGAA------------------AATGAACTGCGAAGCGGCT.............2612.0020100000010
.................................................................................................................................................................................................AGTG-CAGAGACGACCAGTT..........................................................................................................................................1912.0020000000200
..................................................................................................................................................................................................................................................................................................................................GAACTGCGAAGCGGCTCAGG.........2012.0020200000000
.......................................................................................................................................................................................................................................................................................................GGGGAA------------------AATGAACTGCGAAGCGG...............2311.0010000000001
....................................................................................................................................................................................................................................................................................................GTTGGGGAA------------------AATGAACTGCGAAGCG................2511.0010100000000
...........................................................................................................................................................................................................................................................TCTTGAAT--------TTCGTTTAG-----GCCG..................................................................2111.0011000000000
............................................................................................................................................................................................................................................................................................................A------------------AATGAACTGCGAAGCGGCTCAG..........2311.0010100000000
...........................................................................................................................................................................................GATCCAAGTG-CAGAGACGACCA.............................................................................................................................................2211.0010100000000
................................................................................................................................................................................................................................................................................TTAG-----GCCGTTGACTAGTTGG......................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................CGTTGACTAGTTGGGGAA------------------AAT.............................2111.0010100000000
..........................................................................................GTTGTGATAAGGCCAGGCC..................................................................................................................................................................................................................................................1911.0010001000000
.......................................................................................................................................................................................................................................................................................................GGGGAA------------------AATGAACTGCGAAGCGGC..............2411.0010000000001
.........................A------A------ATAGCTCACTCGGCTCTCTGT--C--..............................................................................................................................................................................................................................................................................................2411.0010100000000
....................................................................................................................................................................................................................................................................................................GTTGGGGAA------------------AATGAACTGCGAAGC.................2411.0010100000000
...................................................................................................................................................................................................................................................................................................................................AACTGCGAAGCGGCTCAGG.........1911.0010100000000
.................................................................................................................................................................................................................................................................AT--------TTCGTTTAG-----GCCGTTGAC.............................................................2011.0010100000000
............................................................................................................CGATCAAATTGCTTTGT-GT-GC............................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................TATAGA---TT-------------C-----TCCCATT--TCTTG...............................................................................................2111.0010100000000
...................................................................................................................................................................CTTTTCG-GG--GCATTACTAATAGATC................................................................................................................................................................2511.0010100000000
..........................................................................................................................................................................................AGATCCAAGTG-CAGAGAC..................................................................................................................................................1811.0011000000000
..............................................................................................................................................................................................................................................................................GTTTAG-----GCCGTTGACTAGTTGG......................................................2211.0010100000000
.............................................................................................................GATCAAATTGCTTTGT-GT-GCA-------....................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................AG-----GCCGTTGACTAGTTGG......................................................1811.0010100000000
........................................................................................................................................................................................ATAGATCCAAGTG-CAGAGA...................................................................................................................................................1911.0010000000001
.........................................................................................................................................................................................................................................................................................................GGAA------------------AATGAACTGCGAAGCGG...............2111.0010100000000
............................................................................................................................................................................................................................................................................................................A------------------AATGAACTGCGAAGCGGCTC............2111.0010100000000
...........................................................................................................................................................................................................................................................................................................AA------------------AATGAACTGCGAAGCGGCTC............2211.0010100000000
.........................................................................................................................................................................................TAGATCCAAGTG-CAGAGACGA................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................CGTTGACTAGTTGGGGAA------------------AATG............................2211.0010100000000
......................................................................................................................................................................................................................TAGA---TT-------------C-----TCCCATT--TCTTGAA.............................................................................................2111.0010100000000
........................................................................................................................................................................................ATAGATCCAAGTG-CAGAGACG.................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................TCCAAGTG-CAGAGACGACCAG............................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................CAGTTATAGA---TT-------------C-----TCCCATT--T...................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................CATT--TCTTGAAT--------TTCGTTTAG-----......................................................................2111.0010100000000
................................................................................................................................................................................................AAGTG-CAGAGACGACCAGTT..........................................................................................................................................2011.0010100000000
droPer2
GA--GAGGC-------GCAA-CAGCA------A------ATAGCTCACTCGGCTCTCTAT--C--AAAATAAACAGTTAACAAGACGAACGTTGTGATAAGGCCAGGCCGATCAAATTGCTTTGT-GT-GCA-------AA-------------AGTGTTAATCTTTTCG-GG--GCATTACTAATAGATCCAAGTG-CAGAGACGACCAGTTATAGA---TT-------------C-----TCCCATT--TCTTGAAT--------TTCGTTTAG-----GCCGTTGACTAGTTGGGGAAAATGA------------------ACTGCAAAGCGGCTCAGGA----TACGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................ATCCAAGTG-CAGAGACGAC...............................................................................................................................................1913.003300000
.......................................................................................................................................................................................................................................................................................................GGGGAAAATGA------------------ACTGCAAAGC.................2112.002000002
.................................................................................................................................................................................................................................................................AT--------TTCGTTTAG-----GCCGTTGACT............................................................2111.001100000
...............................................................................................................................................................................................................................................................................TTTAG-----GCCGTTGACTAGTTGG......................................................2111.001000001
.............................................................................................................................................................................................................................................................................CGTTTAG-----GCCGTTGACTAGTTGGGGA...................................................2611.001001000
...................................................................................................................................................................................................................TTATAGA---TT-------------C-----TCCCATT--TCT.................................................................................................2011.001010000
.....................................................................................................................................................................................................................................................CATT--TCTTGAAT--------TTCGTTTAG-----GCC...................................................................2411.001100000
.......................................................................................................................................................................................................................................................TT--TCTTGAAT--------TTCGTTTAG-----GCCGTTGACT............................................................2911.001100000
...........................................................................................................................................................................................................................................................................................CGTTGACTAGTTGGGGAA..................................................1811.001000001

Generated: 05/18/2015 at 11:25 AM