ID:

dsi_10201

 Coordinate:

3r:26708617-26708766 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.3 -13.1 -13.0

Flybase annnotation

five_prime_UTR [3r_26707753_26708616_-]; exon [3r_26706949_26708616_-]; intron [3r_26708617_26716463_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTTTTTTTTTTAACTGAATCCAAAAAGTTCGTTAAACGCACTGAACATCGTTTATTTCGAAGAGCACACAAAAAGTATGAACGAGTGCAATGCACTTGCACACATCAATTAATTTGCATGCCATCCCACCATTGACTTTATTTTGAAACACTGTAATAATATTTGAATTTCTCTGTGCCCCACACAAACAACTTTTGCAGCTCGTAAGTTTTATTTGAATTTAGCCAAACCAAAAACCTAGCATACAAAG
****************************************************..((((((((..((.((.....)).))..(((((((...)))))))....((((((.....))).)))....................)))))))).....................********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 M025
embryo
 O002
Head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
...............................................................................................................................................TGAAACACTGTAATAATATTTGAATT................................................................................. 26 0 1 9.00 9 7 2 0 0 0 0 0 0 0 0
..............................................................................................................................................TTGAAACACTGTAATAATATTTGAATT................................................................................. 27 0 1 5.00 5 4 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGCTCGTAAGTTTTATTTGAATTTAGC......................... 30 0 1 5.00 5 3 2 0 0 0 0 0 0 0 0
..........................................................................................................................................TATTTTGAAACACTGTAATAATATT....................................................................................... 25 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0
....................................................TATTTCGAAGAGCACACAAAAAGTA............................................................................................................................................................................. 25 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGCTCGTAAGTTTTATTTGAATT............................. 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGCTCGTAAGTTTTATTTGAAT.............................. 25 0 1 3.00 3 1 0 0 2 0 0 0 0 0 0
..................................................TTTATTTCGAAGAGCACACAAAAAGTA............................................................................................................................................................................. 27 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGCTCGTAAGTTTTATTTGAATTT............................ 27 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TTATTTTGAAACACTGTAATAATATT....................................................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................TTTTGAAACACTGTAATAATATT....................................................................................... 23 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...........................TTCGTTAAACGCACTGAACATCGTT...................................................................................................................................................................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................CACAAAAAGTATGAACGAGTGCAAT............................................................................................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
........................................................................AAGTATGAACGAGTGCAATGCACT.......................................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
....................................................................CAAAAAGTATGAACGAGTGCAATGCACT.......................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................TGTGCCCCACACAAACAACTTTTGCAGC................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TAATATTTGAATTTCTCTGTGCCCCAC................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.........................................TGAACATCGTTTATTTCGAAGAGCACACA.................................................................................................................................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................TTGAATTTCTCTGTGCCCCACAC................................................................. 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................TTGAATTTCTCTGTGCCCCACACAAACA............................................................ 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................TGTAATAATATTTGAATTTCTCTGTGCCC...................................................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................AAAAGTATGAACGAGTGCAATGCAA........................................................................................................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................TTTGCAGCTCGTAAGTTTTATTTGAA............................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................TTTGAAACACTGTAATAATATTTGATTT................................................................................. 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................GCTCGTAAGTTTTATTTGAAT.............................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................TTGACTTTATTTTGAAACACTGTAATAA........................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TAGCCAAACCAAAAACCTA.......... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................TAATATTTGAATTTCTCTGTGCCCCACA.................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTTGAATTTCTCTGTGCCCCACACAAACA............................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................ACAAAAAACTTTTGCAGCTCGTAAGT......................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TGCAGCTCGTAAGTTTTATTTAAAT.............................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........TAACTGAATTCAAAAAGTTCGTTAAA...................................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................CACCATTGACTTTATTTTGAAACACTG................................................................................................. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................TTGAATTTCTCTGTGCCCCACACAAAA............................................................. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................AAGTATGAACGAGTGCAATGCA............................................................................................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................TGTAATAATATTTGAATTTCTCTGTGC........................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................CATCGTTTATTTCGAAGAGCACA...................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................CCCACACAAACAACTTTT...................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.......................................................TTCGAAGAGCACACAAAAAGTA............................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................AGGTTCGTTAAACGCACTGAACATCGTT...................................................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................AAAAGTATGAACGAGTGCAATGCA............................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................AACGCACTGAACATCGTTTATTTCGA.............................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................GAAGAGCACACAAAAAGTATGAACGAG..................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TTGCAGCTCGTAAGTTTTATTTGAATT............................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................TCAACATCGTTTATTTCGAAGAGCACA...................................................................................................................................................................................... 27 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................................................................CACACAAAAAGTATGAACGAGTGCAA................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................................TGAATTTCCCTGTGCCCCACACAAACAAC.......................................................... 29 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................TGTGCCCCACACAAACAACTTTTGC.................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................TGAACGAGTGCAATGCACTTGCACAC................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTTAGCAAAACCAAAAACCTAGCATA..... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................TTGAAACACTGTAATAATATTTGAAT.................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................CGCACTGAACATCGTTTATTTCGAAGAGC......................................................................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TGAACGAGTGCAATGCACTTGCACACA.................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................AGTTCGTTAAACGCACTGAACATCGT....................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................AACAACTTTTGCAGCTCGTAAGTTTT...................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................TTTGAATTTCTCTGTGCCCCACACAAAC............................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TTTATTTTGAAACACTGTAATAATATT....................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................TGAACATCGTTTATTTCGAAGAGCACA...................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..TTTTTTTTTAACTGAATTCAAAAGGTT............................................................................................................................................................................................................................. 27 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................TAATATTTGAATTTCTCTGTGCC....................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..........TTACTGAATCCAAAAAG............................................................................................................................................................................................................................... 17 1 2 0.50 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................TGAGTTCATTTTGAAATACTGT................................................................................................ 22 3 6 0.17 1 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................TTTTGAAACCCTGTATTAAAATT....................................................................................... 23 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
................................TAAACGCACTGGGCATCG........................................................................................................................................................................................................ 18 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0
TTTTTTTTTTTAACT........................................................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 0 0 0 0 0 1
............................................................................................................................................TTTTGAAACCCTGTAAAAAAA......................................................................................... 21 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

AAAAAAAAAAATTGACTTAGGTTTTTCAAGCAATTTGCGTGACTTGTAGCAAATAAAGCTTCTCGTGTGTTTTTCATACTTGCTCACGTTACGTGAACGTGTGTAGTTAATTAAACGTACGGTAGGGTGGTAACTGAAATAAAACTTTGTGACATTATTATAAACTTAAAGAGACACGGGGTGTGTTTGTTGAAAACGTCGAGCATTCAAAATAAACTTAAATCGGTTTGGTTTTTGGATCGTATGTTTC
*********************************************************************************..((((((((..((.((.....)).))..(((((((...)))))))....((((((.....))).)))....................)))))))).....................**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
...AAAAAAAATTAACTGAGGTT................................................................................................................................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
AAAAAAAAAAATCGATTCAGGTT................................................................................................................................................................................................................................... 23 3 6 0.67 4 2 1 1 0 0 0
....AAAAAAATTAACTGAGGTT................................................................................................................................................................................................................................... 19 2 4 0.25 1 0 1 0 0 0 0
.AAAAAAAAAATCGATTCAGGTT................................................................................................................................................................................................................................... 22 3 8 0.25 2 0 1 1 0 0 0
..AAAAAAAAAAGGACTTAGGTTGTT................................................................................................................................................................................................................................ 24 3 4 0.25 1 0 0 1 0 0 0
....AAAAAAATTGACTTGGGT.................................................................................................................................................................................................................................... 18 1 5 0.20 1 0 0 0 1 0 0
...................................................AATAAAGATTCTCGGGTGT.................................................................................................................................................................................... 19 2 6 0.17 1 0 0 0 1 0 0
..................................................AAAAAAAGATTCTCGGGTGT.................................................................................................................................................................................... 20 3 19 0.16 3 0 0 0 3 0 0
.AAAAAAAAAATCGATTCAGGT.................................................................................................................................................................................................................................... 21 3 20 0.10 2 0 0 2 0 0 0
AAAAAAAAAAATTGGCTT........................................................................................................................................................................................................................................ 18 1 12 0.08 1 0 1 0 0 0 0
AAAAAAAAAGGTTGACTTATGT.................................................................................................................................................................................................................................... 22 3 13 0.08 1 0 1 0 0 0 0
....................................................ATAAAGCTTCTCTTG....................................................................................................................................................................................... 15 1 15 0.07 1 0 0 0 0 1 0
............................................................TCTCGGGTGTTTTTCTTA............................................................................................................................................................................ 18 2 17 0.06 1 0 0 0 0 0 1
.AAAAAAAAATTTTACTTAGGTA................................................................................................................................................................................................................................... 22 3 19 0.05 1 0 0 0 0 1 0
..AAAAAAAAATCGATTCAGGTT................................................................................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:26708567-26708816 - dsi_10201 TTTTTTTT--------TTTAACTGAATCCAAAAAGTTCGTT-AAACGCACTGAACAT---------------------------------------CGTTTATTTCGAAG-AG-----CACA--C-AAAA-----------------AGTATGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CA-------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATCCC--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------TAGCA------------TAC--AAAG
droSec2 scaffold_31:89198-89447 - TTTTTTTTT-------TTTAGCTGAATCCAAAAAGTTCGTT-AAACGCACTGAACAT---------------------------------------CGTTTATTTCGAAG-AG-----CACA--C-AAAA-----------------AGTATGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CA-------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAA-TAATTTGCATGCCATCCC--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------TAGCA------------TAC--AAAG
dm3 chr3R:27428746-27428999 - TTTTTTTTT-TT----TTTAGCTGAATTCAAAAAGTTCGTT-AAACGCACTGAACAT---------------------------------------CGTGTATTTCGAAG-AG-----CACA--C-AAAA-----------------GGGGTGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CAC------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATACC--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------TAGCA------------TAC--AAAG
droEre2 scaffold_4820:546595-546833 + -------------------AGCTGTGGCCAAAAAGTTCGTT-TAACGCACTGAACAT---------------------------------------GGTGTATTTCGAAAAAG-----CAC-----AAAA-----------------AGGGCGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATCCA--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACCA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------AAGCA------------TAC--AAAG
droYak3 3R:28364699-28364932 - -------------------AGCTGAAGCCAAAAAGTTCGTT-AAACGCACTGAACA--------------------------------------------TATTTCGAAAAAG-----CAC-----AAAA-----------------AGGGCGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATCCC--ACCA-----TTTA-----------CTTTATTTTGAAA---CACTGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACCA-CTTTTGCAGCTCGTAAGTTTT----A-TTTCAAT--TTAGCCAAACCAAAAACC-------------------------------------------------AAGCA------------TAC--AAAG
droEug1 scf7180000409488:480231-480471 + GATT-------------TTAGCCCGACCCAAAAAGTTCGTT-AAACGCATTGAACAC---------------------------------------GATATATTTCAAA--AA-----CAC-----AAA-------------------GGGG------------------GGAGAGTGCATTGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCACTCA--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTTAATTTCT----CT---------------------GTGCCC-C----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCAAAACCAAAAACC-----A-------------------------------------------AAGCA------------TAT--CAAG
droBia1 scf7180000302035:86324-86543 - CT----------------TAGCCGAAGCCAAAAAGTTCGTT-AAACGCATTGAACAC---------------------------------------GCTATATTTCGAA--AG-----CACA--CCGAAA-------------GAAAA----------------------GGGGAGTGCATTGCACTC-GC-----ACACACAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTGATTTGCATGCCAT-CA--ACCA-----TTGA-----------CTTTACTTTGAAA---CACTGTAATAATATTTTAATTTC--------------------------------------------A-AACAA--TTTTGCAGCTCGTAAGTTTT----A-TTTC-AT--TTAGACAAAACACAAACC-------------------------------------------------A---------------------AAAG
droTak1 scf7180000415712:494034-494284 - TATTTTTTG-TA----TTTAGCCCAAACCAAAAAGTTCGTT-AAACGCATTGAACAC---------------------------------------GATATATTTCGAA--AGAAACACACACAG-AAAA-----------------AGGGG------------------GGAAAGTGCATTGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATCCA--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTTGATTTCT----CT---------------------GTGCCC-CAAAAACACA-ACCAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGACAAAACA------------------------------------------------------------------------CAC--AAA-
droEle1 scf7180000491194:1461957-1462200 - T------------------AGCTGAAACCAAAAAGTTCGTT-AAACGCATTGAACACGATATA-----------------------------------AATATTTAAA---AA-----CAA-----AAAA-----------------AGAGGGA-A---------------GAAAGTGCATTGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------AAATTTATTTGCATACCATCCA--TCCA-----TTGA-----------CTTTATTTTGAAAC-ACACTGTATTAACATTTTAATTTCT----CT---------------------GTGCCCAC----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAAACAAAAACCA-------------------------------------------------AAGCA------------TAT--AAA-
droRho1 scf7180000779322:281906-282160 + TTTTT------------TTAGCTTAAACCAAAAAGTTCGTT-AAACGCATTGAACACGATAGA-----------------------------------CATATTTTGAA--AG-----CACA--G-AAAA-----------------GGGA----A-----------GG-GATGAGTGCACTGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATTCA--ACCA-----TTGA-----------TTATATTTTGAAACAACACTGTATTAACATTTTAATTTCT----CT---------------------GTGCCCAC----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTCAAT--TTAGCCAAAGAAAAACAA-------------------------------------------------AAGCA------------TAT--AAAT
droFic1 scf7180000454114:110377-110615 - TTT---------------TAGCTCACGCCAAAAAGTTCGTT-AAACGCATTTAACACGACG-A-----------------------------------CGTATTTCGAA--AA-----CAC-----AAAA-----------------AAGGG------------------GAAGAGTGCGTTGCACT--GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------TAATTAATTTGCATGCCATCCA--TCCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTTAATTTCT----CT---------------------GTGCCCAC----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAGACCAAAAAAT-------------------------------------------------AAGCA------------TAT------
droKik1 scf7180000302810:665069-665287 - -------------------GGCTCAGCAAACAAAGTTCGTT-AAACGCATTGAACAC---------------------------------------GAAATATTTCGAA--AG-----TAAA--ACAAAA-------------AC--AGG--------------------GCGGAGTGCAATGCACTT-GC-----ACA--TAA--------------TTACT---------------------------------------------------------------------------------------------------------------------------------------------------GAATTAATTTGCATGCCACAC----TCATTCCGTTGA---------CTCTTTATTTTAAAA---CACTGTAATAATATTTTAATTTCA----C------------------------------------------CAACCCTTTGCAGCTCGTAAGTTTTTCACA-TTTGAAT--TAAGCA--------------------------------------------------------------------------------C--AAGG
droAna3 scaffold_12911:3682315-3682513 + CCTCCCCT-------------------CCCAAAAGTTCGTT-AAACGCTCTGAACAC---------------------------------------GAATCATTCCGAA--AT-----C-----------------------------------------------------CAAGTGCATTGCACTC-CTCCACCACA--CTC------------------T---------------------------------------------------------------------------------------------------------------------------------------------------TAACTCATTTGCATGAGAGAC---------------------------CTTTATTTTGAAA---CACTGTAATAATATTTTAATTTA------------------------------------------AAA-ACCAA-CCTTTCCAGCGCGTAAGTTTC----ATTTTGAAT--TTAGCAAAAATTAAAAAC-----------------------------------------------------------------------AAA-
droBip1 scf7180000396640:539673-539870 + C---------------------------CCAAAAGTTCGTT-AAACGCATTGAACAC---------------------------------------GAATCATTCCGAA--AT-----------------------------------------------------------GGAGTGCATTGCACTC-CC------CA--TAA------------------C---------------------------------------------------------------------------------------------------------------------------------------CCTCAACACCTGTAATTAATTTGCATGCCACACAATACCA-----TTCCAACTGTGAGATCTTTACTTTGAAA---CACTGTAATAATATTTT------------T---------------------G---------------AAACCAA-CTTTTGCAGCGCGTAAGTCAT----T-TT-------TAAGCAAAAACA---------------------------------------------------------------------------------
dp5 2:8363034-8363374 + TTGATTTCCCCCCACC---AG-TCAGTCAACAGAGTTCGTTGAAACGTATTGAACACGAAA-ATAACACAACAAAATAACAACAACAACTAAAACAGAATCAGTCA----------------------------------------------------------------GAGAAGTGCATTGCACTGTGC-----AT-----------------------------------------------------------------------------------------------G--CATGCTAAACCCCCATT----TCATTAATCATGCCATTTTA-------------------------------------------------------------------------------------TTTTTGAAA---CACTGTAATAATATTTTACTTTTTTTAATT---------------------GTGCAAAC----AAACA-AAAAC-CTTTTGCAGCGAGTAAGTTTA----T-TTTGAAT--ATAGCCAAAAAAAGAAAATCGTTAAAGCGTCAAGCTAAAAAATAAATAAGAAGAAGCTCTCTAAACCGAGCTTTGCTAAATACATACAAATAA
droPer2 scaffold_0:2197510-2197834 + TTGATTTCC-CCCACC---AG-TCAGTCAACAGAGTTCGTTGAAACGTATTGAACACGAAA-ATAACACAACAAAATAACAACAACAACAAAAACAGAATCAGTCA----------------------------------------------------------------GAGAAGTGCATTGCACTGTGC-----AT-----------------------------------------------------------------------------------------------G--CATGCTAAACCCCCATT----TCATTAATCATGCCATTTTA-------------------------------------------------------------------------------------TTTTTGAAA---CACTGTAATAATATTTTACTTTTTTTAATT---------------------GTGCAAAC----AAACA-AAAAC-CTTTTGCAGCGAGTAAGTTTA----T-TTTGAAT--ATAGCCAAAAAAAGAAA-TCGTTAAAGCGTCAAGCTAAAAAATAAATAAGAAGAAGCTCTCTAAACCGAGCT------------TTG--AAAA
droWil2 scf2_1100000004902:2959209-2959450 - A-------------------ACAGA-ATTAAAAAGGTCGTT-ACACGTATTGAGCAAAATT-A-----------------------------------TATAT----------------AT-----ATAA-----------------AAAGTGA-ATGAAATTTGCTTG-GCAAAGTGCATTG------GC-----ACA--TCA------------------A-----------------------------------------------------CTAACTAATTGATGACTGATAATGTTTAAATAATATT----TATTTATT--TTCAATTTTATTTTTAATATTCCCTCTTAATCCCCTATATATGCACTT-----------------------------------------------------ATT---TAATCTAATTGTTTATTAATTTCTTT-------------------------------------------------AATTTAAAGCTCGTAAGTT------------------------------------------------------------------------------------------------------AA--AAAG
droVir3 scaffold_13047:9582517-9582837 + TTTATGCTC---AGTTTTACGCTCAATC---AAAGTTCGTT-CAACGCATTGTAAACAGTT-G-----------------------------------AGTATTTTAAAT-AA-----AATA--C-AAAAAACAAAAACAAAAAA--AAAACA-----------------CCAAAGAGCAATGCTCTT-GC------CA--TAT-----TAACAATAATA------------------TGAAATTAATGAACTTCATTTGACATTTAGCATGTACACTT-----------------------AAAAAAAAAAAGAACCACGTAT-----------------------------------------------------------------------TT--TTTGTTAA--------------------------------------CATTTTTATTTAT----TTATCCTAATAATTTATTTTAATGTGCTTGC-----------ATAA-TTTTTGCAGCTCGTAAGTTTT----T-ATATATT--TTAGCTAAAAGAGAGATT--T----------------------------------------------TTCCA-------CTCACTAC--GAGG
droMoj3 scaffold_6540:7689080-7689405 + GCTCAGTT--------TA-----TAACGCTCAAAGTTCGTT-CAACGCATTGTAAACAATT-T-----------------------------------AATATGTTGTA---------TATA--A-ACAA-----------------AAAATGAAA-----------CGCAGCAAGAGCAATGCTCTTTGC-----CAA--TATAACAATAACAATAATATTTCAATTCATTTTAATTTGACATTAATGAACTTCATTTGACATTTAGCATATACACAG-----------------------TAAAAAAAATA----TATATAT-----------------------------------------------------------------------TT--T----------------------TTATTTAAA---TATTTAA---ATATT--TATTTATTTATTTGACCTAACAATTAAT--GAATATGCTTG------------CATA-ATTTTGCAGCGTGTAAGTTTT----T-ATATATT--TTAGCTAAAAGAGAAATT-------------------------------------------------TCCGA------------AAG--AAAT
droGri2 scaffold_14906:2469770-2469856 + T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATATTTTAATTTAA----TT---------------------GCG-----------------CAA-TTTTTGCAGCGCGTAAGTTTT----T--ATGAATTTTTAGCACAAAGAACGGTT-------------------------------------------------TTCCA------------TTC--ATTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTTTTTT--------TTTAACTGAATCCAAAAAGTTCGTT-AAACGCACTGAACAT---------------------------------------CGTTTATTTCGAAG-AG-----CACA--C-AAAA-----------------AGTATGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CA-------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATCCC--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------TAGCA------------TAC--AAAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA---CACTGTAATAATATTTGAATT.......................................................................................................................................................................................2619.00900000072000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA---CACTGTAATAATATTTGAATT.......................................................................................................................................................................................2715.00500000041000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGC........................................................................................3015.00500000032000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGAAA---CACTGTAATAATATT.............................................................................................................................................................................................2514.00400000031000000000
....................................................................................................TATTTCGAAG-AG-----CACA--C-AAAA-----------------AGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.00400000030000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGTAAGTTTT----A-TTTGAAT--T............................................................................................2614.00400000040000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGTAAGTTTT----A-TTTGAAT--.............................................................................................2513.00300000010002000000
..................................................................................................TTTATTTCGAAG-AG-----CACA--C-AAAA-----------------AGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.00300000021000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGTAAGTTTT----A-TTTGAAT--TT...........................................................................................2713.00300000030000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTGAAA---CACTGTAATAATATT.............................................................................................................................................................................................2612.00200000020000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGAAA---CACTGTAATAATATT.............................................................................................................................................................................................2312.00200000011000000000
...................................TTCGTT-AAACGCACTGAACAT---------------------------------------CGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000020000000000
........................................................................................................................CA--C-AAAA-----------------AGTATGA-A----------------CGAGTGCAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000000000020000
.................................................................................................................................A-----------------AGTATGA-A----------------CGAGTGCAATGCACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000000020000
............................................................................................................................C-AAAA-----------------AGTATGA-A----------------CGAGTGCAATGCACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------GTGCCC-C----ACACA-AACAA-CTTTTGCAGC.......................................................................................................................2811.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTTGAATTTCT----CT---------------------GTGCCC-C----AC...........................................................................................................................................2711.00100010000000000000
..................................................TGAACAT---------------------------------------CGTTTATTTCGAAG-AG-----CACA--C-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTCT----CT---------------------GTGCCC-C----ACAC.........................................................................................................................................2311.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACA...................................................................................................................................2811.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-..................................................................................................................................................2911.00100000010000000000
...............................................................................................................................AAA-----------------AGTATGA-A----------------CGAGTGCAATGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGCTCGTAAGTTTT----A-TTTGAA................................................................................................2611.00100000001000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTAAGTTTT----A-TTTGAAT--.............................................................................................2111.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TTGA-----------CTTTATTTTGAAA---CACTGTAATAA.................................................................................................................................................................................................2811.00100000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAACCAAAAACC-------------------------------------------------TA........................1911.00100001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACA..........................................................................................................................................2811.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACA...................................................................................................................................2911.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................C--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTG.......................................................................................................................................................................................................2711.00100010000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AAA....................................................................................................................................2711.00100000001000000000
.................................................................................................................................A-----------------AGTATGA-A----------------CGAGTGCAATGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAATAATATTTGAATTTCT----CT---------------------GTGC.....................................................................................................................................................2711.00100000010000000000
......................................................CAT---------------------------------------CGTTTATTTCGAAG-AG-----CACA--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-C----ACACA-AACAA-CTTTT............................................................................................................................1811.00100000100000000000
.......................................................................................................TTCGAAG-AG-----CACA--C-AAAA-----------------AGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000001000000000
...............................................................................................................................AAA-----------------AGTATGA-A----------------CGAGTGCAATGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000000010000
...........................................AACGCACTGAACAT---------------------------------------CGTTTATTTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..........................................................................................................GAAG-AG-----CACA--C-AAAA-----------------AGTATGA-A----------------CGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCTCGTAAGTTTT----A-TTTGAAT--T............................................................................................2711.00100000001000000000
......................................................................................................................CACA--C-AAAA-----------------AGTATGA-A----------------CGAGTGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------GTGCCC-C----ACACA-AACAA-CTTTTGC..........................................................................................................................2511.00100001000000000000
.......................................................................................................................................................TGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--C....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA---CACTGTAATAATATTTGAAT........................................................................................................................................................................................2611.00100000010000000000
.............................................CGCACTGAACAT---------------------------------------CGTTTATTTCGAAG-AG-----C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
.......................................................................................................................................................TGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CA-------------------................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.................................AGTTCGTT-AAACGCACTGAACAT---------------------------------------CGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA-CTTTTGCAGCTCGTAAGTTTT----........................................................................................................2611.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AAC....................................................................................................................................2811.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTTGAAA---CACTGTAATAATATT.............................................................................................................................................................................................2711.00100000010000000000
..................................................TGAACAT---------------------------------------CGTTTATTTCGAAG-AG-----CACA--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATTTGAATTTCT----CT---------------------GTGCC....................................................................................................................................................2311.00100100000000000000
TTTTTTTT--------TTTAACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000100000000
droSec2
TTTTTTTTT-------TTTAGCTGAATCCAAAAAGTTCGTT-AAACGCACTGAACAT---------------------------------------CGTTTATTTCGAAG-AG-----CACA--C-AAAA-----------------AGTATGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CA-------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAA-TAATTTGCATGCCATCCC--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------TAGCA------------TAC--AAAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCTCGTAAGTTTT----A-TTTGAA................................................................................................2311.0010010
.....................................................ACAT---------------------------------------CGTTTATTTCGAAG-AG-----CACA--C-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
................................................................................................................................AA-----------------AGTATGA-A----------------CGAGTGCAATGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
...............................................................................................................................AAA-----------------AGTATGA-A----------------CGAGTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTTCT----CT---------------------GTGCCC-C----ACACA-.......................................................................................................................................2311.0011000
dm3
TTTTTTTTT-TT----TTTAGCTGAATTCAAAAAGTTCGTT-AAACGCACTGAACAT---------------------------------------CGTGTATTTCGAAG-AG-----CACA--C-AAAA-----------------GGGGTGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CAC------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATACC--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------TAGCA------------TAC--AAAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................TATTTCGAAG-AG-----CACA--C-AAAA-----------------GGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26113.00130000000000000000000000010000000000000000000000100001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-C----ACACA-AACAA-CTTTTGCAGCTCG....................................................................................................................26113.00130000000000000000000000000000000000000000000100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001100000000100000000000000000000200000
......................................................................................................TTTCGAAG-AG-----CACA--C-AAAA-----------------GGGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25112.00120000000000000000000000010000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000020000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
....................................................................................................TATTTCGAAG-AG-----CACA--C-AAAA-----------------GGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25111.00110000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000110000000000200000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGTAAGTTTT----A-TTTGAAT--T............................................................................................26110.00100000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010600000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000
.......................................................................................................TTCGAAG-AG-----CACA--C-AAAA-----------------GGGGTGA-...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2518.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000043000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTAGCCAAACCAAAAACC-------------------------------------------------TAGCA------------TA.......2618.0080000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000030100020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................TATTTCGAAG-AG-----CACA--C-AAAA-----------------GGGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2717.0070000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000020000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................TCGAAG-AG-----CACA--C-AAAA-----------------GGGGTGA-A----------------CG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------..........................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................ATTTCGAAG-AG-----CACA--C-AAAA-----------------GGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2516.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................TCGTT-AAACGCACTGAACAT---------------------------------------CGTGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGTAAGTTTT----A-TTTGAA................................................................................................2415.0050000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000
...................................................GAACAT---------------------------------------CGTGTATTTCGAAG-AG-----CACA--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000
.......................................................................................................................................................TGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGTAAGTTTT----A-TTTGAAT--.............................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTTGAAA---CACTGTAATAATATT.............................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................TGCACTT-GC-----ACA--CAC------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATT...................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCT----CT---------------------GTGCCC-C----ACACA-AACAA-CTTT.............................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGCTCGTAAGTTTT----A-TTT...................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCTCGTAAGTTTT----A-TTTGAA................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000
...........................................AACGCACTGAACAT---------------------------------------CGTGTATTTCGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCCAAACCAAAAACC-------------------------------------------------TAGCA------------TA.......2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................CACTGAACAT---------------------------------------CGTGTATTTCGAAG-AG-----C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AAC....................................................................................................................................3013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TGTATTTCGAAG-AG-----CACA--C-AAAA-----------------GGGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCAGCTCGTAAGTTTT----A-TTTGAA................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010200000
......................................................................................................TTTCGAAG-AG-----CACA--C-AAAA-----------------GGGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CACA--C-AAAA-----------------GGGGTGA-A----------------CGAGTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TAATTTGCATGCCATACC--ACCA-----TTGA-----------C...........................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CAC------------------................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TGAACAT---------------------------------------CGTGTATTTCGAAG-AG-----CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AAACGCACTGAACAT---------------------------------------CGTGTATTTCGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------..........................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................TTCGAAG-AG-----CACA--C-AAAA-----------------GGGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------..........................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ACTGAACAT---------------------------------------CGTGTATTTCGAAG-AG-----CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................................................................................................................................................................................................................ATTAATTTGCATGCCATACC--ACCA-----TT.........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CAT---------------------------------------CGTGTATTTCGAAG-AG-----CACA--C-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ACTGAACAT---------------------------------------CGTGTATTTCGAAG-AG-----C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--.............................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CA--C-AAAA-----------------GGGGTGA-A----------------CGAGTGCAATGCACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................GCACTT-GC-----ACA--CAC------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCA...............................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA-CTTTTGCAGCTCGTAAG................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTAATTTGCATGCCATACC--ACCA-----TTGA-----------C...........................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTTGAAA---CACTGTAATAATATTT............................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCC-C----ACACA-AACAA-CTTTTGCAGCTCG....................................................................................................................2711.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GA-----------CTTTATTTTGAAA---CACTGTAATAATA...............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................ACGCACTGAACAT---------------------------------------CGTGTATTTCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CACA--C-AAAA-----------------GGGGTGA-A----------------CGAGTGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CGAAG-AG-----CACA--C-AAAA-----------------GGGGTGA-A----------------C.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTAATAATATTTGAATTTCT----CT---------------------GT.......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTTTTTTT-TT----TTTAGCTGAATTCAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAA---CACTGTAATAAT................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................AG-AG-----CACA--C-AAAA-----------------GGGGTGA-A----------------CGAGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTT----A-TTTGAAT--TTAGCCAAACC..................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................GCACTGAACAT---------------------------------------CGTGTATTTCGAAG-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................TTTCGAAG-AG-----CACA--C-AAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................AAAA-----------------GGGGTGA-A----------------CGAGTGCAATGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----ACACA-AACAA-CTTTTGCAGCTCG....................................................................................................................2411.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TTTGCATGCCATACC--ACCA-----TTGA-----------C...........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AAGTTCGTT-AAACGCACTGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TTCAAAAAGTTCGTT-AAACGCACTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................ACA--C-AAAA-----------------GGGGTGA-A----------------CGAGTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................ACCA-----TTGA-----------CTTTATTTTGAAA---CACTG.......................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGCTCGTAAGTTTT----A-TTTGAAT--T............................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................T-AAACGCACTGAACAT---------------------------------------CGTGTATTTCGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TACC--ACCA-----TTGA-----------CTTTATTTTGAAA---CAC.........................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
-------------------AGCTGTGGCCAAAAAGTTCGTT-TAACGCACTGAACAT---------------------------------------GGTGTATTTCGAAAAAG-----CAC-----AAAA-----------------AGGGCGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATCCA--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACCA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------AAGCA------------TAC--AAAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCT----CT---------------------GTGCCC-C----ACACA-AACCA-CTTTT............................................................................................................................2711.0011000000
.....................................................................................................................................................................................................................................................................................................................................................................................TTAATTTGCATGCCATCCA--ACCA-----TTGA-----------CC..........................................................................................................................................................................................................................2911.0010100000
.......................GTGGCCAAAAAGTTCGTT-TAACGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATATTTGAATTTCT----CT---------------------GT.......................................................................................................................................................2111.0011000000
.....................................................................................................ATTTCGAAAAAG-----CAC-----AAAA-----------------AGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
...............................................................................................................................AAA-----------------AGGGCGA-A----------------CGAGTGCAATGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
...........................................................................................................................................................................................T-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCA...............................................................................................................................................................................................................................................................2311.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAT--TTAGCCAAACCAAAAACC-------------------------------------------------AAGC......................2711.0011000000
...................................................................................................GTATTTCGAAAAAG-----CAC-----AAAA-----------------AGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
droYak3
-------------------AGCTGAAGCCAAAAAGTTCGTT-AAACGCACTGAACA--------------------------------------------TATTTCGAAAAAG-----CAC-----AAAA-----------------AGGGCGA-A----------------CGAGTGCAATGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATCCC--ACCA-----TTTA-----------CTTTATTTTGAAA---CACTGTAATAATATTTGAATTTCT----CT---------------------GTGCCC-C----ACACA-AACCA-CTTTTGCAGCTCGTAAGTTTT----A-TTTCAAT--TTAGCCAAACCAAAAACC-------------------------------------------------AAGCA------------TAC--AAAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TTTCAAT--TTAGCCAAACCAAA...............................................................................2211.00100010000000
..........................................................................................................GAAAAAG-----CAC-----AAAA-----------------AGGGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000100000
..............................................................................................................AAG-----CAC-----AAAA-----------------AGGGCGA-A----------------CGAGTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.......................................................A--------------------------------------------TATTTCGAAAAAG-----CAC-----AAAA-----------------AGGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACCAAAAACC-------------------------------------------------AAGCA------------TAC--....2111.00100000010000
.........................................................................................................CGAAAAAG-----CAC-----AAAA-----------------AGGGCGA-A----------------CGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAT--TTAGCCAAACCAAAAACC-------------------------------------------------AAGC......................2711.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-AACCA-CTTTTGCAGCTCGTAA.................................................................................................................2311.00101000000000
.................................AGTTCGTT-AAACGCACTGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..............................................................................................................AAG-----CAC-----AAAA-----------------AGGGCGA-A----------------CGAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
........................................................................................................................C-----AAAA-----------------AGGGCGA-A----------------CGAGTGCAATGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCAAAAACC-------------------------------------------------AAGCA------------TAC--AA..2211.00101000000000
...............................................................................................................................AAA-----------------AGGGCGA-A----------------CGAGTGCAATGCACTT-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAATTTCT----CT---------------------GTGCCC-C----ACA..........................................................................................................................................2111.00101000000000
droEug1
GATT-------------TTAGCCCGACCCAAAAAGTTCGTT-AAACGCATTGAACAC---------------------------------------GATATATTTCAAA--AA-----CAC-----AAA-------------------GGGG------------------GGAGAGTGCATTGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCACTCA--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTTAATTTCT----CT---------------------GTGCCC-C----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCAAAACCAAAAACC-----A-------------------------------------------AAGCA------------TAT--CAAGSizeHit CountTotal NormTotal
No Reads
droBia1
CT----------------TAGCCGAAGCCAAAAAGTTCGTT-AAACGCATTGAACAC---------------------------------------GCTATATTTCGAA--AG-----CACA--CCGAAA-------------GAAAA----------------------GGGGAGTGCATTGCACTC-GC-----ACACACAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTGATTTGCATGCCAT-CA--ACCA-----TTGA-----------CTTTACTTTGAAA---CACTGTAATAATATTTTAATTTC--------------------------------------------A-AACAA--TTTTGCAGCTCGTAAGTTTT----A-TTTC-AT--TTAGACAAAACACAAACC-------------------------------------------------A---------------------AAAGSizeHit CountTotal NormTotal
No Reads
droTak1
TATTTTTTG-TA----TTTAGCCCAAACCAAAAAGTTCGTT-AAACGCATTGAACAC---------------------------------------GATATATTTCGAA--AGAAACACACACAG-AAAA-----------------AGGGG------------------GGAAAGTGCATTGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATCCA--ACCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTTGATTTCT----CT---------------------GTGCCC-CAAAAACACA-ACCAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGACAAAACA------------------------------------------------------------------------CAC--AAA-SizeHit CountTotal NormTotal
No Reads
droEle1
T------------------AGCTGAAACCAAAAAGTTCGTT-AAACGCATTGAACACGATATA-----------------------------------AATATTTAAA---AA-----CAA-----AAAA-----------------AGAGGGA-A---------------GAAAGTGCATTGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------AAATTTATTTGCATACCATCCA--TCCA-----TTGA-----------CTTTATTTTGAAAC-ACACTGTATTAACATTTTAATTTCT----CT---------------------GTGCCCAC----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAAACAAAAACCA-------------------------------------------------AAGCA------------TAT--AAA-SizeHit CountTotal NormTotal
No Reads
droRho1
TTTTT------------TTAGCTTAAACCAAAAAGTTCGTT-AAACGCATTGAACACGATAGA-----------------------------------CATATTTTGAA--AG-----CACA--G-AAAA-----------------GGGA----A-----------GG-GATGAGTGCACTGCACTT-GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------CAATTAATTTGCATGCCATTCA--ACCA-----TTGA-----------TTATATTTTGAAACAACACTGTATTAACATTTTAATTTCT----CT---------------------GTGCCCAC----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTCAAT--TTAGCCAAAGAAAAACAA-------------------------------------------------AAGCA------------TAT--AAATSizeHit CountTotal NormTotal
No Reads
droFic1
TTT---------------TAGCTCACGCCAAAAAGTTCGTT-AAACGCATTTAACACGACG-A-----------------------------------CGTATTTCGAA--AA-----CAC-----AAAA-----------------AAGGG------------------GAAGAGTGCGTTGCACT--GC-----ACA--CAA------------------T---------------------------------------------------------------------------------------------------------------------------------------------------TAATTAATTTGCATGCCATCCA--TCCA-----TTGA-----------CTTTATTTTGAAA---CACTGTAATAATATTTTAATTTCT----CT---------------------GTGCCCAC----ACACA-AACAA-CTTTTGCAGCTCGTAAGTTTT----A-TTTGAAT--TTAGCCAGACCAAAAAAT-------------------------------------------------AAGCA------------TAT------SizeHit CountTotal NormTotal
No Reads
droKik1
-------------------GGCTCAGCAAACAAAGTTCGTT-AAACGCATTGAACAC---------------------------------------GAAATATTTCGAA--AG-----TAAA--ACAAAA-------------AC--AGG--------------------GCGGAGTGCAATGCACTT-GC-----ACA--TAA--------------TTACT---------------------------------------------------------------------------------------------------------------------------------------------------GAATTAATTTGCATGCCACAC----TCATTCCGTTGA---------CTCTTTATTTTAAAA---CACTGTAATAATATTTTAATTTCA----C------------------------------------------CAACCCTTTGCAGCTCGTAAGTTTTTCACA-TTTGAAT--TAAGCA--------------------------------------------------------------------------------C--AAGGSizeHit CountTotal NormTotal
No Reads
droAna3
CCTCCCCT-------------------CCCAAAAGTTCGTT-AAACGCTCTGAACAC---------------------------------------GAATCATTCCGAA--AT-----C-----------------------------------------------------CAAGTGCATTGCACTC-CTCCACCACA--CTC------------------T---------------------------------------------------------------------------------------------------------------------------------------------------TAACTCATTTGCATGAGAGAC---------------------------CTTTATTTTGAAA---CACTGTAATAATATTTTAATTTA------------------------------------------AAA-ACCAA-CCTTTCCAGCGCGTAAGTTTC----ATTTTGAAT--TTAGCAAAAATTAAAAAC-----------------------------------------------------------------------AAA-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................TCATTCCGAA--AT-----C-----------------------------------------------------CAAGTGCATTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
.........................................................................................................................................................................................CTC-CTCCACCACA--CTC------------------T---------------------------------------------------------------------------------------------------------------------------------------------------TAACC.......................................................................................................................................................................................................................................................................2211.001010000
...................................................................................................................................................................................ATTGCACTC-CTCCACCACA--CTC------------------T---------------------------------------------------------------------------------------------------------------------------------------------------TAACT.......................................................................................................................................................................................................................................................................2811.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................TTGCATGAGAGAC---------------------------CTTTATTTTGA.................................................................................................................................................................................................................2411.001010000
droBip1
C---------------------------CCAAAAGTTCGTT-AAACGCATTGAACAC---------------------------------------GAATCATTCCGAA--AT-----------------------------------------------------------GGAGTGCATTGCACTC-CC------CA--TAA------------------C---------------------------------------------------------------------------------------------------------------------------------------CCTCAACACCTGTAATTAATTTGCATGCCACACAATACCA-----TTCCAACTGTGAGATCTTTACTTTGAAA---CACTGTAATAATATTTT------------T---------------------G---------------AAACCAA-CTTTTGCAGCGCGTAAGTCAT----T-TT-------TAAGCAAAAACA---------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TTGATTTCCCCCCACC---AG-TCAGTCAACAGAGTTCGTTGAAACGTATTGAACACGAAA-ATAACACAACAAAATAACAACAACAACTAAAACAGAATCAGTCA----------------------------------------------------------------GAGAAGTGCATTGCACTGTGC-----AT-----------------------------------------------------------------------------------------------G--CATGCTAAACCCCCATT----TCATTAATCATGCCATTTTA-------------------------------------------------------------------------------------TTTTTGAAA---CACTGTAATAATATTTTACTTTTTTTAATT---------------------GTGCAAAC----AAACA-AAAAC-CTTTTGCAGCGAGTAAGTTTA----T-TTTGAAT--ATAGCCAAAAAAAGAAAATCGTTAAAGCGTCAAGCTAAAAAATAAATAAGAAGAAGCTCTCTAAACCGAGCTTTGCTAAATACATACAAATAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..GATTTCCCCCCACC---AG-TCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................................................................TGTGC-----AT-----------------------------------------------------------------------------------------------G--CATGCTAAACCCCCATT----.................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..........................................................................................................................................................................................................................................................................................................................................CATTTTA-------------------------------------------------------------------------------------TTTTTGAAA---CACTGTA.....................................................................................................................................................................................................2311.0010000000100
droPer2
TTGATTTCC-CCCACC---AG-TCAGTCAACAGAGTTCGTTGAAACGTATTGAACACGAAA-ATAACACAACAAAATAACAACAACAACAAAAACAGAATCAGTCA----------------------------------------------------------------GAGAAGTGCATTGCACTGTGC-----AT-----------------------------------------------------------------------------------------------G--CATGCTAAACCCCCATT----TCATTAATCATGCCATTTTA-------------------------------------------------------------------------------------TTTTTGAAA---CACTGTAATAATATTTTACTTTTTTTAATT---------------------GTGCAAAC----AAACA-AAAAC-CTTTTGCAGCGAGTAAGTTTA----T-TTTGAAT--ATAGCCAAAAAAAGAAA-TCGTTAAAGCGTCAAGCTAAAAAATAAATAAGAAGAAGCTCTCTAAACCGAGCT------------TTG--AAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................TGAACACGAAA-ATAACACAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.004400000
............................AACAGAGTTCGTTGAAACGTAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC-CTTTTGCAGCGAGTAAGT...............................................................................................................2211.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAGAAA-TCGTTAAAGC.................................................................1911.001100000
............................AACAGAGTTCGTTGAAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
.............................ACAGAGTTCGTTGAAACGTATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
............................AACAGAGTTCGTTGAAACGTATTGAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
droWil2
A-------------------ACAGA-ATTAAAAAGGTCGTT-ACACGTATTGAGCAAAATT-A-----------------------------------TATAT----------------AT-----ATAA-----------------AAAGTGA-ATGAAATTTGCTTG-GCAAAGTGCATTG------GC-----ACA--TCA------------------A-----------------------------------------------------CTAACTAATTGATGACTGATAATGTTTAAATAATATT----TATTTATT--TTCAATTTTATTTTTAATATTCCCTCTTAATCCCCTATATATGCACTT-----------------------------------------------------ATT---TAATCTAATTGTTTATTAATTTCTTT-------------------------------------------------AATTTAAAGCTCGTAAGTT------------------------------------------------------------------------------------------------------AA--AAAGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................TGCTTG-GCAAAGTGCATTG------GC-----AC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.......................................TT-ACACGTATTGAGCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................................................................................................................................................ATTTGCTTG-GCAAAGTGCATTG------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
............................TAAAAAGGTCGTT-ACACGTATTGAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
...........................................................................................................................................................................................................A------------------A-----------------------------------------------------CTAACTAATTGATGACTGATAATGT.................................................................................................................................................................................................................................................................................................................................................2711.00100100
...................................GTCGTT-ACACGTATTGAGCAAAATT-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
.............................................................................................................................................................GAAATTTGCTTG-GCAAAGTGCAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
droVir3
TTTATGCTC---AGTTTTACGCTCAATC---AAAGTTCGTT-CAACGCATTGTAAACAGTT-G-----------------------------------AGTATTTTAAAT-AA-----AATA--C-AAAAAACAAAAACAAAAAA--AAAACA-----------------CCAAAGAGCAATGCTCTT-GC------CA--TAT-----TAACAATAATA------------------TGAAATTAATGAACTTCATTTGACATTTAGCATGTACACTT-----------------------AAAAAAAAAAAGAACCACGTAT-----------------------------------------------------------------------TT--TTTGTTAA--------------------------------------CATTTTTATTTAT----TTATCCTAATAATTTATTTTAATGTGCTTGC-----------ATAA-TTTTTGCAGCTCGTAAGTTTT----T-ATATATT--TTAGCTAAAAGAGAGATT--T----------------------------------------------TTCCA-------CTCACTAC--GAGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................TGTAAACAGTT-G-----------------------------------AGTATTTTAAAT-AA-----AA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2815.005000000000000000000000000001210010000000000000000000000000000000
.TTATGCTC---AGTTTTACGCTCAATC---AAAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000100100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTAGCTAAAAGAGAGATT--T----------------------------------------------TTCCA-------C.............2612.002001000000000000000000010000000000000000000000000000000000000000
.................TACGCTCAATC---AAAGTTCGTT-CAACGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000001100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGTAAGTTTT----T-ATATATT--T............................................................................................2612.002000000000000000000000000002000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-TTTTTGCAGCTCGTAAGTTTT----........................................................................................................2412.002000000000010000000000010000000000000000000000000000000000000000
...................................TTCGTT-CAACGCATTGTAAACAGTT-G-----------------------------------AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000000010010000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATATT--TTAGCTAAAAGAGAGATT--T----------------------------------------------TT........................2712.002000000000000000000000000000200000000000000000000000000000000000
......................TCAATC---AAAGTTCGTT-CAACGCATTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000000000000000000000001001000000000000000000000000000000000000
.................TACGCTCAATC---AAAGTTCGTT-CAACGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000100000000000000000000100000000000000000000000000000000000000
.......TC---AGTTTTACGCTCAATC---AAAGTTCGTT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000011000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-TTTTTGCAGCTCGTAAGTTTT----T-ATA...................................................................................................2812.002000000000000000000000000000200000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATATATT--TTAGCTAAAAGAGAGATT--.........................................................................2612.002000000000000000000000002000000000000000000000000000000000000000
................TTACGCTCAATC---AAAGTTCGTT-CAACGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.002000000000000000000000000100000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT--TTAGCTAAAAGAGAGATT--T----------------------------------------------TTC.......................2611.001000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC-----------ATAA-TTTTTGCAGCTCGTAAGT...............................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTAAAAGAGAGATT--T----------------------------------------------TTCCA-------CTCACT........2911.001000000000000000000000000001000000000000000000000000000000000000
.....................CTCAATC---AAAGTTCGTT-CAACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
...................CGCTCAATC---AAAGTTCGTT-CAACGCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-TTTTTGCAGCTCGTAAGTTTT----T-A.....................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
........C---AGTTTTACGCTCAATC---AAAGTTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-TTTTTGCAGCTCGTAAGTTT.............................................................................................................2311.001000000000000000000000000000100000000000000000000000000000000000
....TGCTC---AGTTTTACGCTCAATC---AAAGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTAAGTTTT----T-ATATATT--TTAGCTA......................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTATTTTAATGTGCTTGC-----------ATAA-TT...............................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-TTTTTGCAGCTCGTAAGTTTT----T-AT....................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATATATT--TTAGCTAAAAGAGAGATT--T----------------------------------------------..........................2711.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATTTATTTTAATGTGCTTGC-----------ATAA-.................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................AATGAACTTCATTTGACATTTA...................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.TTATGCTC---AGTTTTACGCTCAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..................................................TGTAAACAGTT-G-----------------------------------AGTATTTTAAAT-AA-----AAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTATTTTAATGTGCTTGC-----------......................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
TTTATGCTC---AGTTTTACGCTCAATC---AAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCTCGTAAGTTTT----........................................................................................................1811.001000000000000000000000000000100000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-TTTTTGCAGCTCGTAAGT...............................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGCAGCTCGTAAGTTTT----T-ATATAT................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.......TC---AGTTTTACGCTCAATC---AAAGTTCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
................TTACGCTCAATC---AAAGTTCGTT-CAACGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000010000000000000000000000000000000000000
.......................................................................................................................................................CA-----------------CCAAAGAGCAATGCTCTT-GC------CA--T....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGCTCGTAAGTTTT----T-A.....................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAA-TTTTTGCAGCTCGTAAGTTT.............................................................................................................2411.001000000000000000000000000001000000000000000000000000000000000000
.................TACGCTCAATC---AAAGTTCGTT-CAACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCTCGTAAGTTTT----T-ATATATT--T............................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................TGAACTTCATTTGACATTTAGCATG..............................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................TTCATTTGACATTTAGCATGTACAC.........................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................TAATGAACTTCATTTGACATTTAGCAT...............................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAGCTCGTAAGTTTT----T-ATATATT--.............................................................................................2611.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGCTCGTAAGTTTT----T-ATA...................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCAGCTCGTAAGTTTT----T-ATATAT................................................................................................2611.001000000000000000000000000000100000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTAAAAGAGAGATT--T----------------------------------------------TTCCA-------CTCAC.........2811.001000000000000000000000000001000000000000000000000000000000000000
.................................................TTGTAAACAGTT-G-----------------------------------AGTATTTTAAAT-AA-----........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000100000000000000000000000000000000000
..TATGCTC---AGTTTTACGCTCAATC---AAAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................TAACAATAATA------------------TGAAATTAATGAACTT................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000001000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATGTGCTTGC-----------ATAA-TTTTTGCAGC.......................................................................................................................2811.001000000000000000000000000001000000000000000000000000000000000000
.....................................CGTT-CAACGCATTGTAAACAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TT--TTTGTTAA--------------------------------------CATTTTTATTTAT----TTA.............................................................................................................................................................................2611.001000000000000000000000000100000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGAGAGATT--T----------------------------------------------TTCCA-------CTCACTAC--....2711.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAA-TTTTTGCAGCTCGTAAGT...............................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
....................................................TAAACAGTT-G-----------------------------------AGTATTTTAAAT-AA-----AATA--..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000100000000000000000000000000000000000
..........................................CAACGCATTGTAAACAGTT-G-----------------------------------AGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--T----------------------------------------------TTCCA-------CTCACTAC--GAGG1911.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGCAGCTCGTAAGTTTT----T-ATA...................................................................................................2511.001000010000000000000000000000000000000000000000000000000000000000
droMoj3
GCTCAGTT--------TA-----TAACGCTCAAAGTTCGTT-CAACGCATTGTAAACAATT-T-----------------------------------AATATGTTGTA---------TATA--A-ACAA-----------------AAAATGAAA-----------CGCAGCAAGAGCAATGCTCTTTGC-----CAA--TATAACAATAACAATAATATTTCAATTCATTTTAATTTGACATTAATGAACTTCATTTGACATTTAGCATATACACAG-----------------------TAAAAAAAATA----TATATAT-----------------------------------------------------------------------TT--T----------------------TTATTTAAA---TATTTAA---ATATT--TATTTATTTATTTGACCTAACAATTAAT--GAATATGCTTG------------CATA-ATTTTGCAGCGTGTAAGTTTT----T-ATATATT--TTAGCTAAAAGAGAAATT-------------------------------------------------TCCGA------------AAG--AAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......T--------TA-----TAACGCTCAAAGTTCGTT-....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
......................................................................................................................TATA--A-ACAA-----------------AAAATGAAA-----------CGCAGCAAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.......................................................................................................................................................TGAAA-----------CGCAGCAAGAGCAATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droGri2
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAATATTTTAATTTAA----TT---------------------GCG-----------------CAA-TTTTTGCAGCGCGTAAGTTTT----T--ATGAATTTTTAGCACAAAGAACGGTT-------------------------------------------------TTCCA------------TTC--ATTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
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Generated: 05/19/2015 at 05:28 AM