ID:

dsi_1019

 Coordinate:

3l:4200139-4200437 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_4200438_4200543_+]; CDS [3l_4200438_4200543_+]; CDS [3l_4200011_4200138_+]; exon [3l_4199957_4200138_+]; intron [3l_4200139_4200437_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTCTCCTCCAGATTCCTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAGTAAGTTTGTTTATATCGCTGCGAAAGTTTATGCCATTTTCCGCTAATCAAATGGCATGATAAGTTCATATCTATACTATATGTACATATCTACCAAAACAAATTGAATTAGTATGTTTATATCGCTTAGAAAGTAAGCTCTAAGCGAATAACTAATTAATGGCGATAACGAAGAACTAACCTGGTGGCCATGGTTCGATGGCAATCTGATGGTGGGTGTGGTCATGCGACTGTACTAATCTCCCTTGGGGATTCTGTCATTGTATATTCCAGTAATTAAGTAAACCCTATTTTTCCAGATGCCAAGTGCTGGTGGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCG
**************************************************....(((((((((....((((.(((...(((((((((((..........)))))))))))......(((((.......)))))..(((((((((((......((((.((((((..(((....(((((((((........)))))))))..)))..))))))..))))................(((.(((((......))))).)))...)))))))))))...((((((.((.((.(((((((...)))))))..)))))))))).)))))))...))))))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
...............................................................................................................................................................................................................................................................................................................................................................................GGGCGGTGGCACCGGTGGGTGTGCCA...... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.............................AGTGAACCGCGAGCGACAAG.............................................................................................................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................TTAATTGCGATAACGA................................................................................................................................................................................. 16 1 15 0.53 8 8 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................GCCAAGGTTCGAAGGCGATC.............................................................................................................................................. 20 3 4 0.50 2 0 2 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGCACTACCCTGGTTGCCATGG........................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................TTAATTGCGATAACGAA................................................................................................................................................................................ 17 1 12 0.42 5 4 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................GTTGTATAGTCAAGTAATTAAGT................................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................TTTTTTCCAGATGCTAGGTGCT...................................... 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................CTTAATTGCGATAACGAA................................................................................................................................................................................ 18 2 19 0.21 4 0 0 0 0 3 0 0 1 0
..........................................................................................................................................................................................AGCTCTAAGCGGATAATT................................................................................................................................................................................................... 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TCTACTTAATTGCGATAACGA................................................................................................................................................................................. 21 3 7 0.14 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................GATCTACCAAAACAGTTTGA.................................................................................................................................................................................................................................................. 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................TGCTGGTGGGTGTGGT.............................................................................................................................. 16 1 20 0.10 2 0 2 0 0 0 0 0 0 0
.....................................................................................................ACGGCATGAGAAGTTCA......................................................................................................................................................................................................................................................................................... 17 2 11 0.09 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CGATAACGAAGCACT........................................................................................................................................................................... 15 1 11 0.09 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................TCAGAAAGGAAACTCTAAGC........................................................................................................................................................................................................... 20 3 12 0.08 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TAATTGCGATAACGAA................................................................................................................................................................................ 16 1 13 0.08 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................AATTGCGATAACGAA................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0
...................................................TAAGATTGTTTATAT............................................................................................................................................................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................TAATTGCGATAACGA................................................................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................TGAGGTAGTAGGTTTATAT.................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.......................................................................................TTTCCGCTAATCAGATA....................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AAGAGGAGGTCTAAGGACAGGTGTAGAGCTCACTTGGCGCTCGCCGTTCTCATTCAAACAAATATAGCGACGCTTTCAAATACGGTAAAAGGCGATTAGTTTACCGTACTATTCAAGTATAGATATGATATACATGTATAGATGGTTTTGTTTAACTTAATCATACAAATATAGCGAATCTTTCATTCGAGATTCGCTTATTGATTAATTACCGCTATTGCTTCTTGATTGGACCACCGGTACCAAGCTACCGTTAGACTACCACCCACACCAGTACGCTGACATGATTAGAGGGAACCCCTAAGACAGTAACATATAAGGTCATTAATTCATTTGGGATAAAAAGGTCTACGGTTCACGACCACCACCCGCCACCGTGGCCACCCACACGGTACCGGC
**************************************************....(((((((((....((((.(((...(((((((((((..........)))))))))))......(((((.......)))))..(((((((((((......((((.((((((..(((....(((((((((........)))))))))..)))..))))))..))))................(((.(((((......))))).)))...)))))))))))...((((((.((.((.(((((((...)))))))..)))))))))).)))))))...))))))))).............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
................................................................................................................................................................................AAGCTTTCATTCGAG................................................................................................................................................................................................................ 15 1 6 0.33 2 2 0 0
...................................................................................................................................................................................................................CCGCTAACGCTTCTTGAT.......................................................................................................................................................................... 18 2 4 0.25 1 0 1 0
...............................................................................................................................................................................................................................................................................CCCTTCGCTGACATGATTA............................................................................................................. 19 3 8 0.13 1 0 1 0
....................................................................................................................................................................................................................................................................................GGCTGACTTGATTAGTGGG........................................................................................................ 19 3 13 0.08 1 1 0 0
.........................................................................................................................................ATAGAAGGTTTTGTTGAAGT.................................................................................................................................................................................................................................................. 20 3 17 0.06 1 0 1 0
..............................................................................................................................................................................................................................................................................................................AAGCCAGTAAGATATAA................................................................................ 17 2 20 0.05 1 0 0 1
................................................................................................................................TAGGCATGTATCGATGGT............................................................................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:4200089-4200487 + dsi_1019 TTCTCCTCCAGATTC-----CTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAGTAAGTTTGTTTATATCGCTGCGA--AAGTTTATGCC------A-TTTTCCGCTAATC-AAATGGCATGATAAGTTCATATC-----------------TATA-CTATATG--TACATATCTA-----CCAAAACAAATTGAATTAGTATGTTTATAT-------CGCTTAGA-------------AAGTAAGCTCTA---AGCGAATA------------ACTAATTA--ATGGCGATAACGAAG---AACTAACCTGGTGGCC-ATGGTTCGATGGCAATCTGA-------------------------------------------------TGGTGGGTGTGGTCATGCGACTGTACTAATCTCCCTTGGGGATTCTGTCATTGTATATT-----------------C-CAGTAATTA---AGTAAACCC---TAT----TTTTCCAGATGCCAAGTGCTGGTGGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCG
droSec2 scaffold_2:4237418-4237811 + dse_1017 TTCTCCTCCAGATTC-----CTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAGTAAGTTTGTTTATATCGCTGCGA--AAGTTT-----------A-TTTTCCGCTAATC-AAATGTCATGAGAAGTCTATATC-----------------TATATCTATATG--TATATGTCTA-----CCAAAACAAATTGAA-TAATATGTTTATAT-------CGCTTAGA-------------AAGTAAGCTCTA---AGCGAATA------------ACTAATTA--ATGGCGATAACGAAA---AGCTAACCTGGTGGCC-ATGGTTCGATGGAAACCTGA-------------------------------------------------TGGTGGGTGTGGTCATGCGACTGTACTAATCTCCCTTGAGGATTCTGTCATTGTATATT-----------------C-CATTAATTT---AGTAAACCC---TAT----TTTTCCAGATGCCAAGTGCTGGTGGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCG
dm3 chr3L:4240474-4240835 + TTCTCCACCAGATTC-----CTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAGTAAGTTTGTTTATATAGCTGCGA--AAGTTTATGAC------A-TTTTCCGCGAAAC-AAATGGCATGGCAAATCTATATC---------------------------------TATATCTA-----CCAAAACAAATTGAATTAGTATGTTTA----------------------------------------------GGCTAGTA------------ACTAATTA--ATGGCGATAACGAAG---AGATAACTTGTTGGCC-ATGGTTAGATGGCA--CTGA-------------------------------------------------TGGTGGGTGTGGTCATGCGACTGTACTAATCTCCCTTGAGGTGTCTGTCATTGTATATT-----------------C-CAGCAATTA---AGTAAATCC---TATT---TTTTCCAGATGCCAAGTGCTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCG
droEre2 scaffold_4784:6953152-6953550 + TTCTCCTCCAGATTC-----CTGTCCACATCTAGAGTGAACCGCGAGCGGCAAGAGTAAGTTTGTTTATATCGCTGTGA--TAGTTTATGCC------A-AA-ACTGTGA-AC-AAATGCCATCGCAAGAGTATATC-----------------TATCTATGTATGTTTGTGTATCTA-----CCAAATCACATTGAATTAGTATGTTTATAT-------CGCTTAGA-------------AAGAAAGCTCTA---AGATTATA------------ACTAATTA--ATGGCGATAACGAAG---AGCTAACTGGTGGGCC-AGGGTTCGATGGCG--CTGT-------------------------------------------------TGAGGTGGGTGGTCATACGACTATACTTATCTCCCTTGAGGATTCTGTCATTATATATT-----------------C-CAGACATTA---AGTAAACCC---TGTT---TTTTCCAGATGCCAAGTGTTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCAG
droYak3 3L:4816616-4816995 + TTCTCCGCCAGATTC-----CTGTCCACATCTAGAGTGAACCGCGAGCGACAAGAGTAAGTTTGTTTTAATCGCTGTGA--AAGTTTATGCC------A-TTTTTCGCATATC-----------------------------------------TA------------TCTATATCTA-----CCAAAACTCATTGAATTAGTATGTTTATAT-------CGCTTAGA-------------AAGTAAGCTCTA---TACTAATAATATAGCTTAATAATAATAA--CTGGCGATAACGAAG---AGCTAACTGGTGGGCC-ATGGTTCGATGGCA--CTGA-------------------------------------------------TGGAGGGTGTGGTCACACGACTACACTAATCTCCCTTGAGGATTCTGTCATTAGGTATT-----------------T-CAGCAATTA---AGTAAACCC---TGTTTT-ATTTTCAGATGCCAAGTGTTGGTCGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCG
droEug1 scf7180000409466:2006393-2006795 + TTCTCCACCAGATTC-----TTGTCCACATCGCGAGTGAACTACGAGCGTCAAGAGTAAGTTTGTTTATTTCGATGTGA--AAGTTTT-GCA------A-TTTTCCACAAACC-GGATAGCATGGCAAATGTATGTCTTAC------------------------G--TGTATATCTA-----TCAAAACAAATTGAATTAGTATGATTA-GGTGGGG-----TTAGC---------------------GCTA---AGCTAAAA------------GTTAATAC--TTAGCGATAACGAAA---TGTTAGCTTATGGGTC-ATGGTTTGATTACA--ATGATA---------------------------------------------TTTAGAGGGTGTGGTCATGCGACTGTTCTTACCTCCTTTGACCATTCTGTCATAAAGTGTAACTGAAATGA-AACACACTC----ACTAGTTA-A--AATC---TATTTC-CCCTTAAGATGCCAAGTGTTAGTTGTGGGTGGCGGTACTGGTGGCTGTGCCATGGCCG
droBia1 scf7180000302428:952887-953280 + TTCGCAACCAGATTC-----CTGTCCACATCGCGGGTGAACCTCGAGCGGCAAGAGTAAGTTTGTTTATATCGCTGTGA--AAGTTTT-GCG------A-TTCTCCGCGAACC-GGATGGCATGGCAAGTGT---------------------------------------ATATCTA-----TCAAAACAAATTGAATTAGTATGCTTTAGGCGGGG-----TTAGC-------------ATGTAGGTTCTA---AGTTACTA------------CCTGGTAA--ATGGCGATAATGAAA---TTTGAACTTCTGGGTC-ACGGTTCGATTACG--TTGATACTCGTGCAGGA--GC--------------------------TCTTTTTAGAGGGTGTGGTCATGC---------------------ATATTCTGTCATGAGGAGTCCCTGGAATTTCAAA--ACTA----TTTCATAG-C--AATT---TTGTTC-CCTTCCAGATGTCAAGTTTTGGTGGTGGGAGGAGGAACTGGTGGCTGCGCCATGGCCG
droTak1 scf7180000415941:52898-53290 + TTCGCCACCAGATTC-----CTTTCCACCTCACGAGTGAATTACGAGAGGCAAGAGTAAGTTTGTTTATTTCGCTGTGA--AAGTTTT-GCA------A-TTTTCAACGAACC-GGCTGGCATAGC-----------------------------------------------------------AAAACAAATTGAATTAGTATGTTTTAGGTGGGG-----TTAGC-------------ACTTAAGCTCTA---AGTTAATA------------CTTAGTTA--AGAGCGATAACGAAA---TGTTAGGATGTGGTTCGATGGTTCGATTATA--ATGATATA------CAAGCTC--------------------------TTTTTATAGAGGGTGTGGTCATGCGACCTG-----CCTCCCTTGAAGATTCTGTCATTAAAAAGTAATGATATTACAAAAAAATA----TTTAATTA-T--AACA---TTTTT--ACCCACAGATGTCAAGTTTTGGTGGTGGGAGGTGGAACCGGTGGCTGTGCCATGGCGG
droEle1 scf7180000491249:5114857-5115269 + TTTTCCGCTAGATTT-----CTTTCAACATCGCGGGTGAACCACGAGCGGCAAGAGTAAGTTTGTTTATTTCGCTGTGAAAAAGTTTT-GCT------AGTTTATCGCGAACC-AACTGGCATGCCAAGTGTATATC---------------------------------------TCTCACAATAAAACAAATTCAATTAGTATGCTTTAGGTGGGG-----TTAGC-------------AACTAAACAAAA---AGT--ATA------------CCTAATTA--ATGGCGATAACGAAG---AGTTCATTTGTGGGCC-ATGGTTCGATTACG--AAGATACA------TAGATTA--------------------------GCTTTTTTGAGGGTGTGGTCAGGGGATTGTC-----CTACTTTTAATAATCTGTCATAAGGGGATCCTGAAATTTAAAA--ATTT----TTTAATTA-A--AATG---TATTTTGTCTACCAGATGTCAAGTTCTGGTTGTGGGCGGCGGAACTGGCGGCTGTGCCATGGCCG
droRho1 scf7180000779786:35749-36162 + TTTTCCACCAGATTC-----CTTTCAACATCGCGAGTGAACCACCAGCGGCAAGAGTAAGTTTGTTTATTTCGATGTGA--AAGTTTTTGCG------A-ATTCCCGCGAATC-GAATGGCATGGCAAGTGCTTGT--------------------------------GGTATATCTCTCGTATAAAAACAAATTGAATTAGTGTGTTTTAGGTGGGG-----TTAGC-------------AACTAAGTTCCA---AGC--ATA------------TCTAATTA--ATGGCGATAACGAAG---AGTTAAGTTATGGGTC-AGGGTTCGATTACG--ATGATATA------TTAGCA----------------------------CTCTTTGGAGGGTGTGGTCATGCGACTGTC-----CCTCCTTGAAGATTCTGTCATAAAGAGTACCTGGAATCA-AAA--CCCC----TCTGATTT-A--AATC---TATCTT-TCTTCCAGATGTCAAGTGTTAGTTGTGGGTGGTGGTACTGGTGGATGTGCCATGGCCG
droFic1 scf7180000454113:1476452-1476878 + TTTTCCACCAGGTTC-----CTCTCCACATCGCGAGTGAACCTCGAGCGGCAAGAGTAAGTTTGTTTATTT-TCTGTGA--AAGTTTA-GCC------G-TTTTCTGCGAACC-GGATGGCATGGCAAGTGTTTGGTTCGGGT----GTGTGTTTATA-TTATAT---TATATATCTA-----CCAAAACAAATGCAATTAGTATGTATTTGTTGGGC-----TTAGC-------------ACGTAGA--CTA---GGC--ATA------------TCTAATAA--ATGGCGATAATGAAG---AGCTAACTTACGGGTC-ATGGTTTTGTTACT--ATGATTTT------TTAGCTC--------------------------TCTCTTTGGAGGGTGTGGTCAC-----CAT-----CTTCCTTAGCAGCTTCTGTCATCAATAGGTTATCAAATTCCTTA--GCTT----TTTAATTG-A--AATC---TATTTC-CCTTCTAGATGCCAAGTGTTGGTTGTGGGAGGCGGCTCTGGCGGATGTGCCATGGCCG
droKik1 scf7180000302383:632936-633345 + TTG---ACCAGAAGC-----CTTTCCACAACGCATAAGCTCTTTGAGCGGCAAGAGTAAGTTTGATTT-GTTTTTGTGA--AAGTTTTCAC-------AATT-TCTGAGAATCGAGAGAGCTTAGCAAGTGTTTACTCTGGT--------------------------GGCATGTCTA-----TT-AAACAAATCTAATTAGTATGTTTCGAGGG--GTTTGTTTGGC-------------ACGTAGGCCACACCAAGC--ATA------------CCTAATTA--ATGGTGATAACGAAG---AGCTAAGTTGGGACCC-ATGGATCGATTGGGTATAGA----------TCCGCTAGCTTGGTTAGCGAAATGATGAAGCATTATCTATATTAAGTGGGGTCA-------------------------------------AAGTATCTCTGAAATATATAA--AT-TAGA-CTTA---A-A--AAACTTTTT-T---TCTGGCAGATGTCAAGTTCTGGTCGTTGGTGGCGGCACTGGCGGCTGTGCCATGGCTG
droAna3 scaffold_13337:14665078-14665316 + GCCTTGACCAGATAC-----CTCTCCACCACGCGTGTAAACAATGAAAGGCAAGAGTAAGTATATTT----CTGTGCAA--AAATATT-GCG------A-TTTCGCGGTAATT-ATAGAGCTTCGAGAGTGTTTACTTTGC---------------------------TGAATATCTA-----TC-AAACAAATTCGATTAGAATACTTCAGG-------CACCCGGACCT----------TGCTTGGCACCA---AAC--ATT------------TCTAATTAAAAAGGTGATAACAAAGTAGTGCTAACTTGTTGGCC-ATGGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396641:645240-645486 - AACTTGACCAGATAC-----CTCTCTACCACGCGTGTAAACAATGAAAGGCAAGAGTAAGTAA---------------------TATT-GCGATTTCTA-TTCCTCCGTAATT-AAAGAGCTTCAAGAGTGTTTATTTTGCTGCATA--C----T----------A--TGTATATCTA-----TC-AAACAAATTCGATTAGAATGTTTCAGG-------CACCCGGACTTTGCGGCCGGCTGCCTGGCACCA---AAC--ATT------------TCTAATTAA-AAGGTGATAACAAAGTGGTGCTAACTAGT-GG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGGCT-
dp5 XR_group8:8408645-8408710 + AATTCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTTTCAGCTGCAAAGTTTTGGTTGTGGGCGGCGGCAGTGGCGGCTGTGCCATGGCCG
droPer2 scaffold_40:600802-600869 + TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTC---CC-T---TTTTTCAGCTGCAAAGTTTTGGTTGTGGGCGGCGGCAGTGGCGGCTGTGCCATGGCCG
droWil2 scf2_1100000004762:4004154-4004244 - TCC--CAATAGATTAATAATCTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT---TT-T---TGTTTTAGTTGCAAAGTGCTGGTGGTGGGCGGTGGCTCCGGTGGTTGTGCCATGGCTG
droVir3 scaffold_13049:2128518-2128585 + TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT---TA-T---TTACACAGTTGCAAAGTTTTGGTTGTTGGCGGCGGCTCCGGCGGCTGTGCGATGGCCG
droMoj3 scaffold_6654:1730625-1730681 - TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATGTCAAGTTTTGGTTGTTGGCGGCGGCGCTGGCGGCTGTGCTTTGGCCG
droGri2 scaffold_15110:3176644-3176695 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGTAAAGTTCTGGTGGTTGGTGGCGGTGCCGGTGGCTGTGCCATGGCCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTCTCCTCCAGATTC-----CTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAGTAAGTTTGTTTATATCGCTGCGA--AAGTTTATGCC------A-TTTTCCGCTAATC-AAATGGCATGATAAGTTCATATC-----------------TATA-CTATATG--TACATATCTA-----CCAAAACAAATTGAATTAGTATGTTTATAT-------CGCTTAGA-------------AAGTAAGCTCTA---AGCGAATA------------ACTAATTA--ATGGCGATAACGAAG---AACTAACCTGGTGGCC-ATGGTTCGATGGCAATCTGA-------------------------------------------------TGGTGGGTGTGGTCATGCGACTGTACTAATCTCCCTTGGGGATTCTGTCATTGTATATT-----------------C-CAGTAATTA---AGTAAACCC---TAT----TTTTCCAGATGCCAAGTGCTGGTGGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGCGGTGGCACCGGTGGGTGTGCCA......2611.00100010000000000000
droSec2
TTCTCCTCCAGATTC-----CTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAGTAAGTTTGTTTATATCGCTGCGA--AAGTTT-----------A-TTTTCCGCTAATC-AAATGTCATGAGAAGTCTATATC-----------------TATATCTATATG--TATATGTCTA-----CCAAAACAAATTGAA-TAATATGTTTATAT-------CGCTTAGA-------------AAGTAAGCTCTA---AGCGAATA------------ACTAATTA--ATGGCGATAACGAAA---AGCTAACCTGGTGGCC-ATGGTTCGATGGAAACCTGA-------------------------------------------------TGGTGGGTGTGGTCATGCGACTGTACTAATCTCCCTTGAGGATTCTGTCATTGTATATT-----------------C-CATTAATTT---AGTAAACCC---TAT----TTTTCCAGATGCCAAGTGCTGGTGGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTGGCACCGGTGGGTGTGCC.......2311.0010010
..................................AGTGAACCGCGAGCGGCAAGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
....................CTGTCCACATCTCGAGTGAACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
......................................................................................................TTCCGCTAATC-AAATGTCATGAGAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
...................................GTGAACCGCGAGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
..CTCCTCCAGATTC-----CTGTCCACATCTCGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
..........GATTC-----CTGTCCACATCTCGAGTGAACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100
............TTC-----CTGTCCACATCTCGAGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
dm3
TTCTCCACCAGATTC-----CTGTCCACATCTCGAGTGAACCGCGAGCGGCAAGAGTAAGTTTGTTTATATAGCTGCGA--AAGTTTATGAC------A-TTTTCCGCGAAAC-AAATGGCATGGCAAATCTATATC---------------------------------TATATCTA-----CCAAAACAAATTGAATTAGTATGTTTA----------------------------------------------GGCTAGTA------------ACTAATTA--ATGGCGATAACGAAG---AGATAACTTGTTGGCC-ATGGTTAGATGGCA--CTGA-------------------------------------------------TGGTGGGTGTGGTCATGCGACTGTACTAATCTCCCTTGAGGTGTCTGTCATTGTATATT-----------------C-CAGCAATTA---AGTAAATCC---TATT---TTTTCCAGATGCCAAGTGCTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................TTA--ATGGCGATAACGAAC---.............................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTTGTGGGCGGTGGCA.....................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
................................CGAGTGAACCGCGAGCGGCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................ATCTCGAGTGAACCGCGAGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACATCTCGAGTGAACCGCGAGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTGCTGGTTGTGGGC............................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000
......................GTCCACATCTCGAGTGAACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TCGAGTGAACCGCGAGCGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
.............................................................................................................................................................................................................................................................................................................................................CA--CTGA-------------------------------------------------TGGTGGGTGTGGTCA........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTGGGCGGTGGCACCGGTGGG.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................TCCACATCTCGAGTGAACCGCGAGCGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GTGAACCGCGAGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................TAATCTCCCTTGAGGTGTCTG........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
....................CTGTCCACATCTCGAGTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................GAGTGAACCGCGAGCGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGGCGGTGGCACCGGTGG..............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................GAGTGAACCGCGAGCGGCAAGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................GTGAACCGCGAGCGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCGGTGGCACCGGTGGGT............2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGTGCTGGTTGTGGGCGGTGGC......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..................................AGTGAACCGCGAGCGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAGTGCTGGTTGTG...............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTCTCCACCAGATTC-----CTGTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AATGGCATGGCAAATCTA........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAAGTGCTGGTTGTGGGC............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGCTGGTTGTGGGCGGTGG.......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............TC-----CTGTCCACATCTCGAGTGAACCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCACCGGTGGGTGTGC........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................ACATCTCGAGTGAACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTTGAGGTGTCTGTCATTG..................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................A--CTGA-------------------------------------------------TGGTGGGTGTGGT..........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
............................................................................................................................................................................................................................................................................................................................................GCA--CTGA-------------------------------------------------TGGTGGGTGTGGTCATGC.....................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCGGTGGCACCGGTGGGTGTGC........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..........................ACATCTCGAGTGAACCGCGAGCGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............C-----CTGTCCACATCTCGAGTGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
......................GTCCACATCTCGAGTGAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TAGTA------------ACTAATTA--ATGGCGATAACG...................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGCTGGTTGTGGGCGGTGGT......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTGCTGGTTGTGGGCG...........................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................ATCTCGAGTGAACCGCGAGCGGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................GAACCGCGAGCGGCAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGTGGGTGTGCCATGGGG.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TTC-----CTGTCCACATCTCGAGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ACCGCGAGCGGCAAGAGTAAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CGAGTGAACCGCGAGCGGCAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGTGCTGGTTGTGGGCGGTGGCAC....................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................................................................................................................................................................TTA--ATGGCGATAACGAAG---G............................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTCTCCTCCAGATTC-----CTGTCCACATCTAGAGTGAACCGCGAGCGGCAAGAGTAAGTTTGTTTATATCGCTGTGA--TAGTTTATGCC------A-AA-ACTGTGA-AC-AAATGCCATCGCAAGAGTATATC-----------------TATCTATGTATGTTTGTGTATCTA-----CCAAATCACATTGAATTAGTATGTTTATAT-------CGCTTAGA-------------AAGAAAGCTCTA---AGATTATA------------ACTAATTA--ATGGCGATAACGAAG---AGCTAACTGGTGGGCC-AGGGTTCGATGGCG--CTGT-------------------------------------------------TGAGGTGGGTGGTCATACGACTATACTTATCTCCCTTGAGGATTCTGTCATTATATATT-----------------C-CAGACATTA---AGTAAACCC---TGTT---TTTTCCAGATGCCAAGTGTTGGTTGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGGTGGCACCGGTGGGTGTGCC.......2711.0010001000
......................GTCCACATCTAGAGTGAACCGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
..............................CTAGAGTGAACCGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAGTGTTGGTTGTGGGC............................2211.0011000000
............................ATCTAGAGTGAACCGCGAGCGGCAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..........GATTC-----CTGTCCACATCTAGAGTGAACCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000
droYak3
TTCTCCGCCAGATTC-----CTGTCCACATCTAGAGTGAACCGCGAGCGACAAGAGTAAGTTTGTTTTAATCGCTGTGA--AAGTTTATGCC------A-TTTTTCGCATATC-----------------------------------------TA------------TCTATATCTA-----CCAAAACTCATTGAATTAGTATGTTTATAT-------CGCTTAGA-------------AAGTAAGCTCTA---TACTAATAATATAGCTTAATAATAATAA--CTGGCGATAACGAAG---AGCTAACTGGTGGGCC-ATGGTTCGATGGCA--CTGA-------------------------------------------------TGGAGGGTGTGGTCACACGACTACACTAATCTCCCTTGAGGATTCTGTCATTAGGTATT-----------------T-CAGCAATTA---AGTAAACCC---TGTTTT-ATTTTCAGATGCCAAGTGTTGGTCGTGGGCGGTGGCACCGGTGGGTGTGCCATGGCCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................CATCTAGAGTGAACCGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000
..............................CTAGAGTGAACCGCGAGCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-ATTTTCAGATGCCAAGTGTTGGTC..................................2511.00100000010000
..............................CTAGAGTGAACCGCGAGCGACAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGGTGTGCCATGGCC.1811.00101000000000
......................GTCCACATCTAGAGTGAACCGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
......................GTCCACATCTAGAGTGAACCGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.....................................................................................................................................................................................................................................................................................................................................TTCGATGGCA--CTGA-------------------------------------------------TGGAGGGTGT.............................................................................................................................................................2411.00100000010000
.....................................GAACCGCGAGCGACAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTCAGATGCCAAGTGTTGGT...................................2311.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAGTGTTGGTCGTGGGC............................2211.00100000010000
.........................CACATCTAGAGTGAACCGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGTGGGTGTGCCATGGCC.2111.00100100000000
........................CCACATCTAGAGTGAACCGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGTGGGTGTGCCATGGCC.2211.00101000000000
...................................................................................................................................................................................................................................................................................................................................GGTTCGATGGCA--CTGA-------------------------------------------------TGGAGGGTGT.............................................................................................................................................................2611.00100000010000
............................ATCTAGAGTGAACCGCGAGCGACAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
TTCTCCGCCAGATTC-----CTGTCCAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
...........................................................................................................................................................................................................................................................................................................AG---AGCTAACTGGTGGGCC-ATGGTTC.....................................................................................................................................................................................................................................2511.00100000010000
..........................ACATCTAGAGTGAACCGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
...........................CATCTAGAGTGAACCGCGAGCGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..........GATTC-----CTGTCCACATCTAGAGTGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
.......................TCCACATCTAGAGTGAACCGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCAAGTGTTGGTCGT................................1811.00100000100000
droEug1
TTCTCCACCAGATTC-----TTGTCCACATCGCGAGTGAACTACGAGCGTCAAGAGTAAGTTTGTTTATTTCGATGTGA--AAGTTTT-GCA------A-TTTTCCACAAACC-GGATAGCATGGCAAATGTATGTCTTAC------------------------G--TGTATATCTA-----TCAAAACAAATTGAATTAGTATGATTA-GGTGGGG-----TTAGC---------------------GCTA---AGCTAAAA------------GTTAATAC--TTAGCGATAACGAAA---TGTTAGCTTATGGGTC-ATGGTTTGATTACA--ATGATA---------------------------------------------TTTAGAGGGTGTGGTCATGCGACTGTTCTTACCTCCTTTGACCATTCTGTCATAAAGTGTAACTGAAATGA-AACACACTC----ACTAGTTA-A--AATC---TATTTC-CCCTTAAGATGCCAAGTGTTAGTTGTGGGTGGCGGTACTGGTGGCTGTGCCATGGCCGSizeHit CountTotal NormTotal
No Reads
droBia1
TTCGCAACCAGATTC-----CTGTCCACATCGCGGGTGAACCTCGAGCGGCAAGAGTAAGTTTGTTTATATCGCTGTGA--AAGTTTT-GCG------A-TTCTCCGCGAACC-GGATGGCATGGCAAGTGT---------------------------------------ATATCTA-----TCAAAACAAATTGAATTAGTATGCTTTAGGCGGGG-----TTAGC-------------ATGTAGGTTCTA---AGTTACTA------------CCTGGTAA--ATGGCGATAATGAAA---TTTGAACTTCTGGGTC-ACGGTTCGATTACG--TTGATACTCGTGCAGGA--GC--------------------------TCTTTTTAGAGGGTGTGGTCATGC---------------------ATATTCTGTCATGAGGAGTCCCTGGAATTTCAAA--ACTA----TTTCATAG-C--AATT---TTGTTC-CCTTCCAGATGTCAAGTTTTGGTGGTGGGAGGAGGAACTGGTGGCTGCGCCATGGCCGSizeHit CountTotal NormTotal
No Reads
droTak1
TTCGCCACCAGATTC-----CTTTCCACCTCACGAGTGAATTACGAGAGGCAAGAGTAAGTTTGTTTATTTCGCTGTGA--AAGTTTT-GCA------A-TTTTCAACGAACC-GGCTGGCATAGC-----------------------------------------------------------AAAACAAATTGAATTAGTATGTTTTAGGTGGGG-----TTAGC-------------ACTTAAGCTCTA---AGTTAATA------------CTTAGTTA--AGAGCGATAACGAAA---TGTTAGGATGTGGTTCGATGGTTCGATTATA--ATGATATA------CAAGCTC--------------------------TTTTTATAGAGGGTGTGGTCATGCGACCTG-----CCTCCCTTGAAGATTCTGTCATTAAAAAGTAATGATATTACAAAAAAATA----TTTAATTA-T--AACA---TTTTT--ACCCACAGATGTCAAGTTTTGGTGGTGGGAGGTGGAACCGGTGGCTGTGCCATGGCGGSizeHit CountTotal NormTotal
No Reads
droEle1
TTTTCCGCTAGATTT-----CTTTCAACATCGCGGGTGAACCACGAGCGGCAAGAGTAAGTTTGTTTATTTCGCTGTGAAAAAGTTTT-GCT------AGTTTATCGCGAACC-AACTGGCATGCCAAGTGTATATC---------------------------------------TCTCACAATAAAACAAATTCAATTAGTATGCTTTAGGTGGGG-----TTAGC-------------AACTAAACAAAA---AGT--ATA------------CCTAATTA--ATGGCGATAACGAAG---AGTTCATTTGTGGGCC-ATGGTTCGATTACG--AAGATACA------TAGATTA--------------------------GCTTTTTTGAGGGTGTGGTCAGGGGATTGTC-----CTACTTTTAATAATCTGTCATAAGGGGATCCTGAAATTTAAAA--ATTT----TTTAATTA-A--AATG---TATTTTGTCTACCAGATGTCAAGTTCTGGTTGTGGGCGGCGGAACTGGCGGCTGTGCCATGGCCGSizeHit CountTotal NormTotal
No Reads
droRho1
TTTTCCACCAGATTC-----CTTTCAACATCGCGAGTGAACCACCAGCGGCAAGAGTAAGTTTGTTTATTTCGATGTGA--AAGTTTTTGCG------A-ATTCCCGCGAATC-GAATGGCATGGCAAGTGCTTGT--------------------------------GGTATATCTCTCGTATAAAAACAAATTGAATTAGTGTGTTTTAGGTGGGG-----TTAGC-------------AACTAAGTTCCA---AGC--ATA------------TCTAATTA--ATGGCGATAACGAAG---AGTTAAGTTATGGGTC-AGGGTTCGATTACG--ATGATATA------TTAGCA----------------------------CTCTTTGGAGGGTGTGGTCATGCGACTGTC-----CCTCCTTGAAGATTCTGTCATAAAGAGTACCTGGAATCA-AAA--CCCC----TCTGATTT-A--AATC---TATCTT-TCTTCCAGATGTCAAGTGTTAGTTGTGGGTGGTGGTACTGGTGGATGTGCCATGGCCGSizeHit CountTotal NormTotal
No Reads
droFic1
TTTTCCACCAGGTTC-----CTCTCCACATCGCGAGTGAACCTCGAGCGGCAAGAGTAAGTTTGTTTATTT-TCTGTGA--AAGTTTA-GCC------G-TTTTCTGCGAACC-GGATGGCATGGCAAGTGTTTGGTTCGGGT----GTGTGTTTATA-TTATAT---TATATATCTA-----CCAAAACAAATGCAATTAGTATGTATTTGTTGGGC-----TTAGC-------------ACGTAGA--CTA---GGC--ATA------------TCTAATAA--ATGGCGATAATGAAG---AGCTAACTTACGGGTC-ATGGTTTTGTTACT--ATGATTTT------TTAGCTC--------------------------TCTCTTTGGAGGGTGTGGTCAC-----CAT-----CTTCCTTAGCAGCTTCTGTCATCAATAGGTTATCAAATTCCTTA--GCTT----TTTAATTG-A--AATC---TATTTC-CCTTCTAGATGCCAAGTGTTGGTTGTGGGAGGCGGCTCTGGCGGATGTGCCATGGCCGSizeHit CountTotal NormTotal
No Reads
droKik1
TTG---ACCAGAAGC-----CTTTCCACAACGCATAAGCTCTTTGAGCGGCAAGAGTAAGTTTGATTT-GTTTTTGTGA--AAGTTTTCAC-------AATT-TCTGAGAATCGAGAGAGCTTAGCAAGTGTTTACTCTGGT--------------------------GGCATGTCTA-----TT-AAACAAATCTAATTAGTATGTTTCGAGGG--GTTTGTTTGGC-------------ACGTAGGCCACACCAAGC--ATA------------CCTAATTA--ATGGTGATAACGAAG---AGCTAAGTTGGGACCC-ATGGATCGATTGGGTATAGA----------TCCGCTAGCTTGGTTAGCGAAATGATGAAGCATTATCTATATTAAGTGGGGTCA-------------------------------------AAGTATCTCTGAAATATATAA--AT-TAGA-CTTA---A-A--AAACTTTTT-T---TCTGGCAGATGTCAAGTTCTGGTCGTTGGTGGCGGCACTGGCGGCTGTGCCATGGCTGSizeHit CountTotal NormTotal
No Reads
droAna3
GCCTTGACCAGATAC-----CTCTCCACCACGCGTGTAAACAATGAAAGGCAAGAGTAAGTATATTT----CTGTGCAA--AAATATT-GCG------A-TTTCGCGGTAATT-ATAGAGCTTCGAGAGTGTTTACTTTGC---------------------------TGAATATCTA-----TC-AAACAAATTCGATTAGAATACTTCAGG-------CACCCGGACCT----------TGCTTGGCACCA---AAC--ATT------------TCTAATTAAAAAGGTGATAACAAAGTAGTGCTAACTTGTTGGCC-ATGGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................AACAATGAAAGGCAAGAGTAAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000010
........................CCACCACGCGTGTAAACAATGAAAGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000010
...........................CCACGCGTGTAAACAATGAAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.......CCAGATAC-----CTCTCCACCACGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
AACTTGACCAGATAC-----CTCTCTACCACGCGTGTAAACAATGAAAGGCAAGAGTAAGTAA---------------------TATT-GCGATTTCTA-TTCCTCCGTAATT-AAAGAGCTTCAAGAGTGTTTATTTTGCTGCATA--C----T----------A--TGTATATCTA-----TC-AAACAAATTCGATTAGAATGTTTCAGG-------CACCCGGACTTTGCGGCCGGCTGCCTGGCACCA---AAC--ATT------------TCTAATTAA-AAGGTGATAACAAAGTGGTGCTAACTAGT-GG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCATGGCT-SizeHit CountTotal NormTotal
No Reads
dp5
AATTCCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---TTTTTCAGCTGCAAAGTTTTGGTTGTGGGCGGCGGCAGTGGCGGCTGTGCCATGGCCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTTTGGTTGTGGGCGGCGGC......................2312.0020100000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTGTGGGCGGC.........................1812.0020000000002
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTTTGGTTGTGGGCGGCGGCAGT...................2611.0010000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGTTTTGGTTGTGGG.............................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGGCGGCGGCAGTGGCGGCTGTGC........2711.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGGCGGCGGCAGTGGC................1811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGGTTGTGGGCGGCGGC......................2111.0010000000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAAAGTTTTGGTTGTGGGCGGCGGC......................2711.0010000000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTTTTGGTTGTGGGCG...........................1911.0010100000000
droPer2
TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTC---CC-T---TTTTTCAGCTGCAAAGTTTTGGTTGTGGGCGGCGGCAGTGGCGGCTGTGCCATGGCCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TCC--CAATAGATTAATAATCTTTTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTT---TT-T---TGTTTTAGTTGCAAAGTGCTGGTGGTGGGCGGTGGCTCCGGTGGTTGTGCCATGGCTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGTGGGCGGTGGCTCCGGTGGT.............2511.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGTGCTGGTGGTGGGCGGT.........................2311.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCTCCGGTGGTTGTGC........1911.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGTGGTGGGCGGTGGCTCCGGTG...............2611.00100100
droVir3
TGA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAT---TA-T---TTACACAGTTGCAAAGTTTTGGTTGTTGGCGGCGGCTCCGGCGGCTGTGCGATGGCCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTTGTTGGCGGCGGCTCCGGCGGC.............2911.001000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGCGGCTGTGCGATGGC..2011.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
TTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGATGTCAAGTTTTGGTTGTTGGCGGCGGCGCTGGCGGCTGTGCTTTGGCCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGTTGTTGGCGGCGG.......................1911.001100000
droGri2
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGATGTAAAGTTCTGGTGGTTGGTGGCGGTGCCGGTGGCTGTGCCATGGCCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 04:29 AM