ID:

dsi_10173

 Coordinate:

2r:3414642-3414791 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.8 -13.8 -13.6 -13.6

Flybase annnotation

exon [2r_3414453_3414641_+]; CDS [2r_3414453_3414641_+]; intron [2r_3414642_3416615_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAATTCGGCTGGTTTTGGCTACGGGTTTTCTGCTTTCTGTCAGCCGTCTTCGCTCCGTGCCCCAACCAGCCCCAGCCAATTGATTAATTCTGCGCGGGCGCGGGTCGCAGGGGGCGGGGCAAGTCAGTCGACGACGACGACAGAAAACGACGCAAAAGTGAACGGCGACGCGGCGCAGTAGCTGGCTGATGGT
***********************************************************************************....((..................(((.((((((...............................)))))))))))******************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 O002
Head
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.....................ACGAATCGCCGAAACGCTCGG................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...................................................................................TTTCTGCTTTCTGTCAGCCGT.................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............ACCTGGAAACAAATCGCC........................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................TGATTGATTCTGCGCGGGCGC............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................GGAAACAAATCGCCGAAACGCT................................................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................TGATTAATTCTGCGCGGGAGC............................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................AAACGCTCGGTGTGCCTG........................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................ATTGATTAATTCTGCGCGGGCGCG........................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................AGTGAAATTCGGCTGGTTTTG................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
................TGGAAACAAATCGCCGAAACGCTCGG................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................................GTATTGTGCTTTCTGTCAG...................................................................................................................................................... 19 2 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................GTGGACGATGACGACAAAAAA.............................................. 21 3 5 0.20 1 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGCGGCGCATTAGCTAGTT...... 19 3 8 0.13 1 0 0 0 0 0 0 0 0 1 0
.........................................................................GGCTACGGCTTTTCT.................................................................................................................................................................. 15 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................CGAGGACAGAAAACG............................................ 15 1 16 0.06 1 0 0 0 0 1 0 0 0 0 0
.......................................................TGAAATTCAGCTGGTCTTC................................................................................................................................................................................ 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGAACCGGGACGCGGC................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................CGCGGATCGCGGGGGG............................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CGCGTTCCGGGTCTGGACCTTTGTTTAGCGGCTTTGCGAGCCACACGGACCATTCACTTTAAGCCGACCAAAACCGATGCCCAAAAGACGAAAGACAGTCGGCAGAAGCGAGGCACGGGGTTGGTCGGGGTCGGTTAACTAATTAAGACGCGCCCGCGCCCAGCGTCCCCCGCCCCGTTCAGTCAGCTGCTGCTGCTGTCTTTTGCTGCGTTTTCACTTGCCGCTGCGCCGCGTCATCGACCGACTACCA
*******************************************************************************************....((..................(((.((((((...............................)))))))))))*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 M023
head
 O002
Head
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M024
male body
..................................................................................................................ACGGGGTTGGTCGGGGTCGGTT.................................................................................................................. 22 0 1 3.00 3 1 0 0 0 2 0 0 0 0
..........................................................................................AAAGACAGTCGGCAGAAGC............................................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................TTGTTTAGCGGCTTTGCGAGCCA............................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................ACGGGGTTGGTCGGGGTCGGAT.................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................TGGCACGGGGTTGGTCGGGG........................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....TCCGGGTCTGGACCTTTGTTTA............................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................ACGGGGTTGGTCGGGG........................................................................................................................ 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................AGCCGACCAAAACCGATGCCCAA...................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...................................................................................................................CGGGGTTGGTCGGGGTCG..................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................CAGGCACGGGGTTGGTCGGGGTCGGTT.................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...GTTCCGGGTCTGGACCTT..................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................TTAAGCCGACCAAAACCGATGCCCA....................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................AAGCGAGGCACGGGGTTGGTCGGG......................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..................................................................................................................ACGGGGTTGGTCGGGGTCGGT................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................AAGCCGACCAAAACCG.............................................................................................................................................................................. 16 0 2 0.50 1 0 1 0 0 0 0 0 0 0
........GGGTCTCGACCTTTGTT................................................................................................................................................................................................................................. 17 1 3 0.33 1 0 0 0 0 0 0 0 1 0
...............................................................................................CTGTCGGCAGAAGCG............................................................................................................................................ 15 1 4 0.25 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................GCTGCTGGTGCTGTCT................................................. 16 1 8 0.13 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................GTCGGTTAACTCATGAAGAGG.................................................................................................... 21 3 9 0.11 1 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................................................................................ACTTGCCGCCCCGCCGGGT................ 19 3 12 0.08 1 0 0 0 0 0 1 0 0 0
.................................................................................................................................................AGACGCGCCCGTGTCCCGC...................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 1 0
................................................................................................................................GGTCGGTGAACTCATGAAGA...................................................................................................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 1
.................................................................................................GTCGGCAGAAGCGAGA......................................................................................................................................... 16 1 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3414592-3414841 + dsi_10173 GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCAGC------------------------------CGTCTTCGCTCC--------------------------------------------------------------------GTGCCCCAACCAGCCCC-AGC-CAATTGATTA-ATTCTGCGC-----------------------GGGCGCGG-G-----TC----G--------------------CA----GGGGG-----------C--G--GGGCAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGT
droSec2 scaffold_1:216606-216848 + dse_602 GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGCT-----------------------------------------------------------------------------------TTCTGTCAGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCCCCAACCAGCCCC-AGC-CAATTGATTA-ATTCTGTGC-----------------------GGGCGCGG-G-----TC----G--------------------CA----GGGGG-----------C--G--GGGCAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGT
dm3 chr2R:2550213-2550461 + GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCAGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCCCCAACCAGCCCC-AGC-CAATTGATTA-ATTCTGTGC-----------------------GGGCGCAG-G-----TC----G--------------------AA----GG-GG-----------C--G--GGACAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGT
droEre2 scaffold_4929:19995049-19995292 - GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCTGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCCCCAACC-------AGC-CAATTGATTA-ATTCTGTAC-----------------------GGGCGCGG-G-----TC----G--------------------CA----GGGAG-----------C--G--GGACAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGT
droYak3 2L:15295143-15295386 + GCGCAAGGCTCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCTGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCCCCAACC-------AGC-CAATTGATTA-ATTCTGTAC-----------------------GGCAGCGG-G-----TT----G--------------------CA----GGGAG-----------C--G--GGATAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGT
droEug1 scf7180000409462:3423823-3424069 + GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGTTGGTTTTTGG-------------------------------CT-ACGGGTTTCC--------------------------------------------------------A-----G---------------CTTTCTGTCTTC------------------------------AGTCGCCAGTCC--------------------------------------------------------------------GTGCCCCAACC-------AGC-CAATTGATTA-ATTCTGTAA-----------------------GGG----G-A-----------G--------------------CAGA----GTGTGAGGGACGGGA--C--GGACGAG-TCAGT------CGACGACG---------------------------------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGACGCAGTAGCTGGCTGATGGT
droBia1 scf7180000302292:3600948-3601204 - GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGGC----TT----------------------CGCT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTC-------------------------------------TCCAGTCC--------------------------------------------------------------------GTGCCCCAGCC-------AGC-CAATTGATTA-ATTCTCCGA-----------------------GGGC-CGG-AGCGGGCCGGGGACGGGCAGAGAAGAGA--------------GG-----------C--G--AGACAAG-TCAGT------CGACGACG---------------------------------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGACGCAGTAGCTGGCTGATGGT
droTak1 scf7180000413887:52735-53007 - GCGCAAGGCCCAGACCTGGAAACAAATTGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAAT-----TCAGCTGGTTTTTGGC----TTT---------------------TGCT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCTGCTGTCTGCCGTCTTCAGCCTGTAGTCTCTCCAGTCTTCAGTCC--------------------------------------------------------------------GTGCCCCAAC------------CAATTGATTA-ATTCTGTCC-----------------------GAGGGCGG-G-----------A--------------------CGGG--GC-AG-----------A--G--GGACGAG-TCGGT------CGACGACG---------------------------------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGACGCAGTAGCTGGCTGATGGT
droEle1 scf7180000491217:467745-467966 - GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTTTTGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------A-----G---------------CTTTCTG--------------------------------------------TCC--------------------------------------------------------------------GTGCCCCAACC-------AGT-CAATTGATTA-ATTCTCTAA-----------------------GGG----G-G-----------A--------------------CAGG----GAGCGA-----------A--AGAC--G-AAAGT------CGACGACG---------------------------------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGT
droRho1 scf7180000766409:436052-436281 + GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTTTTGG-------------------------------CT-ACGGGTTTTT--------------------------------------------------------A-----G---------------CTTTCTG--------------------------------------------TCC--------------------------------------------------------------------GTGCCCCAACC-------AGC-CAATTGATTA-ATTCTGTTA-----------------------GGG----G-G-----------A--------------------CAGG----GAGTGA-----------A--AGACAAG-TCCGT------CGACGACG----------------------ACAGAA-----------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGACGCAGTAGCTGGCTGATGGT
droFic1 scf7180000453955:756326-756552 - GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGAGTTTTC--------------------------------------------------------TGTTCAG---------------CTTTCTG--------------------------------------------TCC--------------------------------------------------------------------GTGCCCCAACA-------AGC-CAATTGATTA-ATTCTGTAA-----------------------GGGGGCTG-A-----------G--------------------C-------GGG-----------A--G--GGACGAG-TCAGT------CGACGACG---------------------------------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGACGCAGTAGCTGGCTGACTAT
droKik1 scf7180000302470:115514-115772 + GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGTCTGGTTT-TGG-------------------------------CT-ACGGGCT-----------------------------------------------------------------------------------------------------------------------------------GTCC--------------------------------------------------------------------GTGCCCCAACA----AC-AGC-CAATTGATTA-ATTCTGTAA-----------------------AGG----GGG-----C--------------------------C--------------------------------AG-AGAGT------CGACGACG----------------------GCAGTGGCCGAGACTGAGGCCGTGGCGGAGGCGGTGGCAG--AGGCAGAGGCAGCA----------AGTGTACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGT
droAna3 scaffold_13266:18464282-18464358 - GCGCAAGGCCCAGACCTGGAAGCAGATTGCCGAAACGCTCGGAGTACCAGGTAAGTGAAAT-----TCGGCTATCTC-TGG-------------------------------CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000394114:19830-20027 - GCGCAAGGCACAGACCTGGAAGCAGATTGCCGAAACGCTCGGTGTACCTGGTAAGTGAAAT-----TCGGCTGACTC-TGG-------------------------------CTCGCGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACA----AC-AAG-CAATTGATTG-CTTGTAAAA-----------------------GGG------G-----CC----A------CAG-----------T--A----GAGTGG--------AGCCATCGGAGAGTGCCGT------CGACGACG----------------------ACAGTGGCTGAGAC-----------------------------------------------------------------AGAGGCTGAG----GCGGCGG---------------------CTGAGACG
dp5 3:813146-813483 + dps_922 CCGCAAAGCCCAGACATGGAAACAAATCGCCGAAACACTCGGAGTGCCTGGTAAGTGAAAT-----TCGT--------T--CCGACTTG----------------------G----------------------------------------------------------------------------------------------TCCGACTCG---------AC--------------T-CCCAGC--GCAGTCCGGGTCCAGGTCGGTCTGCTCTGGGGTATATCTCAGTAGATATAGTATGTGGCAGAGACGTCGCGACTGGTGCCCCAACA----ACAA-CCAAATTGATTA-ATTCTGCAG-----------------------GAG----GGG-----CG----A--------------------CAGA----GGGTG--------------------AG-CTAGC------CGACGACG----------------------ACAGTGGCTGAGAC------------GGTGGCGGTGGCAG--AGGCAGCAAAAGCAAGCAAGTGTAAGTGTACAGAAAACGACGCAAAAGTGAACGGCGAG----GCGACAGAG----------ACGGT
droPer2 scaffold_2:988982-989319 + CCGCAAAGCCCAGACATGGAAACAAATCGCCGAAACACTCGGAGTGCCTGGTAAGTGAAAT-----TCGT--------T--CCGACTTG----------------------G----------------------------------------------------------------------------------------------TCCGACTCG---------AC--------------T-CCCAGC--GCAGTCCGGGTCCAGGTCGGTCTGCTCTGGGGTATATCTCAGTAGATATAGTATGTGGCAGAGACGTCGCGACTGGTGCCCCAACA----ACAA-CCAAATTGATTA-ATTCTGCAG-----------------------GAG----GGG-----CG----A--------------------CAGA----GGGTG--------------------AG-CTAGC------CGACGACG----------------------ACAGTGGCTGAGAC------------GGTGGCGGTGGCAG--AGGCAGCAAAAGCAAGCAAGTGTAAGTGTACAGAAAACGACGCAAAAGTGAACGGCGAG----GCGACAGAG----------ACGGT
droWil2 scf2_1100000004954:2045909-2046058 - AAGGAAGGCCCAGACATGGAAGCAAATAGCCGAAACACTTGGTGTGCCTGGTAAGTTAAATGGTCTCTGTCTGGTTATTGG-------------------------------CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGATTA-ATTTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAAAACGACGCAAAAGTAAACTGCGACAGCGACGACGCAGTAGC--------GGT
droVir3 scaffold_12875:15432772-15432861 + GCGGGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG-G-----CA----G--------------------CA----GG--------------------------------------------------------------------------------------------------------------CGGGCAGAAAAAGCA----------AGTGTACAGA-AACGACGCAAAAGTGAACGGCGAC----GCGGCGGAGACGC-GACAGACGAT
droMoj3 scaffold_6496:8364604-8364983 - GCGTAAGGCGCAGACTTGGAAGCAAATCGCTGAAACACTTGGAGTTAGCGGTAAGTGAAAT-----TTT---AGTGT-TG------------------------------TGAA-ACGGGTGTCCGAAGGGTGCAACCAGCCCATAAGCTGTGTGGCAAGTGAAATTGA-------GTATTGGCCG---CGGAGGCAACTAAGGCAGCTGGC-GC------------------------------CGTCGTCG---------------------------------------------------------------------------TC----------GC-AGC-AAATTGATTAAATTCTGTGTTCGTACACAAGAGAAGAGGCAGAGAGGGTGG-AACGGGTGCAGAATGGGCTGGCAACAGAGGCGACATA----CGACG--------------------AC-ATCGT------CGACAGCG----------------------ACAGCGG--------------------GCGTCGGCAGCAGGCGGGCAGCAAAAGCA----------AGTGTACAGA-AACGACGCAAAAGTGAACGGCGAC----GCGACGGAGACGC-GACAGTCGGT
droGri2 scaffold_15245:12234336-12234689 + GCGCAAAGCACAAACCTGGAAGCAAATCGCCGAAACCCTCGGCGTCAGTGGTAAGTGAAAT-----TTGT--------TGGCCAAATTCAGAAAAATTCACTCAATGTTGCA----------------------------------------GCAGCAAGTGAAATTGGTTAGTGGGTATCAGTCGAGACGAGGG--------TCTGCTG--------------------------------------------TCG--------------------------------------------------------------------CTG-------------C-AGC-AAATTGATTA-ATTCTAAGT----------------AGGCAGAGGGG-CAG-A-----------GCAGGCTAGCAACAG------T--GAGA-CGGCG--------------------AC-ATCGTTCGTCGCGGCAGCAGTAGTAGCAGCGGTGGAAGGCTGCAGCGG--------------------GCGTCGGCAGCAGGCGGGCAGCAAAAGCA----------AGTGTACAGA-AACGACGCAAAAGTGAACGGCGAC----GCAACGGAGACGC-GACAGACGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCAGC------------------------------CGTCTTCGCTCC--------------------------------------------------------------------GTGCCCCAACCAGCCCC-AGC-CAATTGATTA-ATTCTGCGC-----------------------GGGCGCGG-G-----TC----G--------------------CA----GGGGG-----------C--G--GGGCAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................TTTC--------------------------------------------------------T-----G---------------CTTTCTGTCAGC------------------------------CGT......................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.............ACCTGGAAACAAATCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.................GGAAACAAATCGCCGAAACGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
................................AAACGCTCGGTGTGCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................ATTGATTA-ATTCTGCGC-----------------------GGGCGCG.................................................................................................................................................................................................................................................2411.00101000000000000000
.....................................................AGTGAAAT-----TCGGCTGGTTT-TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
................TGGAAACAAATCGCCGAAACGCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
droSec2
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGCT-----------------------------------------------------------------------------------TTCTGTCAGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCCCCAACCAGCCCC-AGC-CAATTGATTA-ATTCTGTGC-----------------------GGGCGCGG-G-----TC----G--------------------CA----GGGGG-----------C--G--GGGCAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................AAACGCTCGGTGTGCCTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.............................................................................................................................................................................................................................................................................................................................................................................................................G-G-----TC----G--------------------CA----GGGGG-----------C--G--GGGC..............................................................................................................................................................................1811.0010001
.................................AACGCTCGGTGTGCCTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010010
dm3
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCAGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCCCCAACCAGCCCC-AGC-CAATTGATTA-ATTCTGTGC-----------------------GGGCGCAG-G-----TC----G--------------------AA----GG-GG-----------C--G--GGACAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................AT-----TCGGCTGGTTT-TGG-------------------------------CT-ACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................CGGCTGGTTT-TGG-------------------------------CT-ACGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................GAAACGCTCGGTGTGCCTGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AGTGAAAT-----TCGGCTGGTTT-TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000
......................................................GTGAAAT-----TCGGCTGGTTT-TGG-------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACAAATCGCCGAAACGCTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC----GCGGCGCAGTAGCTGGCTGATGGT2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000
..........................................................................................................................TTC--------------------------------------------------------T-----G---------------CTTTCTGTCAGC------------------------------CGTC.....................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.......................................................TGAAAT-----TCGGCTGGTTT-TGG-------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TTTCTGTCAGC------------------------------CGTCTTCGGT...............................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAACGACGCAAAAGTGAAC..................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................TGTCAGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GT.......................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGGAAACAAATCGCCGAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................TGGAAACAAATCGCCGAAACGCTCGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGCAAGGCCCAGACCTGGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCA...........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................T-TGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTT................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAC----GCGGCGCAGTAGCTGGC.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................AACGCTCGGTGTGCCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TGTGCCTGGTAAGTGAAAT-----T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACAAATCGCCGAAACGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................CGTCTTCGGTCC--------------------------------------------------------------------GTGCCCCAC................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................GAAACGCTCGGTGTGCCTGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............CTGGAAACAAATCGCCGAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................GAAACGCTCGGTGTGCCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CGCTCGGTGTGCCTGGTAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........CAGACCTGGAAACAAATCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................C-----------------------GGGCGCAG-G-----TC----G--------------------AA----GG-GG-----------C--.....................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................AGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGGTAAGTGAAAT-----TCGGCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............CCTGGAAACAAATCGCCGAAACGCTCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................TCAGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGC.....................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CAGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCCC...................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCAAAAGTGAACGGCGAC----G.......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..GCAAGGCCCAGACCTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCGAC----GCGGCGCAGTAG............2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CTTTCTGTCAGC------------------------------CGTCTTCGG................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TCGCCGAAACGCTCGGTGTGCCTGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAGTGAAAT-----TCGGCTGGTTT-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAAAGTGAACGGCGAC----G.......................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAACGGCGAC----GCGGCGCAGTA.............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................CGCCGAAACGCTCGGTGTGCCTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCCAGACCTGGAAACAAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................ATCGCCGAAACGCTCGGTGTGCCTGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GCTGGTTT-TGG-------------------------------CT-ACGGGTTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCCAGACCTGGAAACAAATCGCCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
............................................................T-----TCGGCTGGTTT-TGG-------------------------------CT-ACGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................CGTCTTCGGTCC--------------------------------------------------------------------GTGCCCCAA................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAA........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CGCCGAAACGCTCGGTGTGCCTGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................T-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................T-----TCGGCTGGTTT-TGG-------------------------------CT-ACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GCCCAGACCTGGAAACAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............ACCTGGAAACAAATCGCCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.CGCAAGGCCCAGACCTGGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GAAACAAATCGCCGAAACGCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCGCAGTAGCTGGCTGATGGT2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................AAACGCTCGGTGTGCCTGGTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........CCAGACCTGGAAACAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCCC...................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TTGATTA-ATTCTGTGC-----------------------GGGCG...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GTCAGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTG......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACAAATCGCCGAAACGCTCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GCCTGGTAAGTGAAAT-----TCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......GCCCAGACCTGGAAACAAATCGCCGAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................AAACAAATCGCCGAAACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................AGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCC....................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TAAGTGAAAT-----TCGGCTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
..............................................CCTGGTAAGTGAAAT-----TCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....AAGGCCCAGACCTGGAAACAAATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................GTGTGCCTGGTAAGTGAAAT-----TCGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCTGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCCCCAACC-------AGC-CAATTGATTA-ATTCTGTAC-----------------------GGGCGCGG-G-----TC----G--------------------CA----GGGAG-----------C--G--GGACAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------..........................................................2111.0011000000
droYak3
GCGCAAGGCTCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCTGC------------------------------CGTCTTCGGTCC--------------------------------------------------------------------GTGCCCCAACC-------AGC-CAATTGATTA-ATTCTGTAC-----------------------GGCAGCGG-G-----TT----G--------------------CA----GGGAG-----------C--G--GGATAAG-TCAGT------CGACGACG----------------------ACG--------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................TCGGTCC--------------------------------------------------------------------GTGCCCCAACC-------AGC-C..................................................................................................................................................................................................................................................................................................2211.00101000000000
droEug1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGTTGGTTTTTGG-------------------------------CT-ACGGGTTTCC--------------------------------------------------------A-----G---------------CTTTCTGTCTTC------------------------------AGTCGCCAGTCC--------------------------------------------------------------------GTGCCCCAACC-------AGC-CAATTGATTA-ATTCTGTAA-----------------------GGG----G-A-----------G--------------------CAGA----GTGTGAGGGACGGGA--C--GGACGAG-TCAGT------CGACGACG---------------------------------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGACGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotal
No Reads
droBia1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGGC----TT----------------------CGCT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTC-------------------------------------TCCAGTCC--------------------------------------------------------------------GTGCCCCAGCC-------AGC-CAATTGATTA-ATTCTCCGA-----------------------GGGC-CGG-AGCGGGCCGGGGACGGGCAGAGAAGAGA--------------GG-----------C--G--AGACAAG-TCAGT------CGACGACG---------------------------------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGACGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotal
No Reads
droTak1
GCGCAAGGCCCAGACCTGGAAACAAATTGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAAT-----TCAGCTGGTTTTTGGC----TTT---------------------TGCT-ACGGGTTTTC--------------------------------------------------------T-----G---------------CTTTCTGTCTGCTGTCTGCCGTCTTCAGCCTGTAGTCTCTCCAGTCTTCAGTCC--------------------------------------------------------------------GTGCCCCAAC------------CAATTGATTA-ATTCTGTCC-----------------------GAGGGCGG-G-----------A--------------------CGGG--GC-AG-----------A--G--GGACGAG-TCGGT------CGACGACG---------------------------------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGACGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotal
No Reads
droEle1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTTTTGG-------------------------------CT-ACGGGTTTTC--------------------------------------------------------A-----G---------------CTTTCTG--------------------------------------------TCC--------------------------------------------------------------------GTGCCCCAACC-------AGT-CAATTGATTA-ATTCTCTAA-----------------------GGG----G-G-----------A--------------------CAGG----GAGCGA-----------A--AGAC--G-AAAGT------CGACGACG---------------------------------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotal
No Reads
droRho1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACTCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTTTTGG-------------------------------CT-ACGGGTTTTT--------------------------------------------------------A-----G---------------CTTTCTG--------------------------------------------TCC--------------------------------------------------------------------GTGCCCCAACC-------AGC-CAATTGATTA-ATTCTGTTA-----------------------GGG----G-G-----------A--------------------CAGG----GAGTGA-----------A--AGACAAG-TCCGT------CGACGACG----------------------ACAGAA-----------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGACGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotal
No Reads
droFic1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGGCTGGTTT-TGG-------------------------------CT-ACGAGTTTTC--------------------------------------------------------TGTTCAG---------------CTTTCTG--------------------------------------------TCC--------------------------------------------------------------------GTGCCCCAACA-------AGC-CAATTGATTA-ATTCTGTAA-----------------------GGGGGCTG-A-----------G--------------------C-------GGG-----------A--G--GGACGAG-TCAGT------CGACGACG---------------------------------------------------------------------------------------------ACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGACGCAGTAGCTGGCTGACTATSizeHit CountTotal NormTotal
No Reads
droKik1
GCGCAAGGCCCAGACCTGGAAACAAATCGCCGAAACGCTCGGTGTGCCTGGTAAGTGAAAT-----TCGTCTGGTTT-TGG-------------------------------CT-ACGGGCT-----------------------------------------------------------------------------------------------------------------------------------GTCC--------------------------------------------------------------------GTGCCCCAACA----AC-AGC-CAATTGATTA-ATTCTGTAA-----------------------AGG----GGG-----C--------------------------C--------------------------------AG-AGAGT------CGACGACG----------------------GCAGTGGCCGAGACTGAGGCCGTGGCGGAGGCGGTGGCAG--AGGCAGAGGCAGCA----------AGTGTACAGAAAACGACGCAAAAGTGAACGGCGAC----GCGGCGCAGTAGCTGGCTGATGGTSizeHit CountTotal NormTotal
No Reads
droAna3
GCGCAAGGCCCAGACCTGGAAGCAGATTGCCGAAACGCTCGGAGTACCAGGTAAGTGAAAT-----TCGGCTATCTC-TGG-------------------------------CT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................AGCAGATTGCCGAAACGCTCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droBip1
GCGCAAGGCACAGACCTGGAAGCAGATTGCCGAAACGCTCGGTGTACCTGGTAAGTGAAAT-----TCGGCTGACTC-TGG-------------------------------CTCGCGAGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAACA----AC-AAG-CAATTGATTG-CTTGTAAAA-----------------------GGG------G-----CC----A------CAG-----------T--A----GAGTGG--------AGCCATCGGAGAGTGCCGT------CGACGACG----------------------ACAGTGGCTGAGAC-----------------------------------------------------------------AGAGGCTGAG----GCGGCGG---------------------CTGAGACGSizeHit CountTotal NormTotal
No Reads
dp5
CCGCAAAGCCCAGACATGGAAACAAATCGCCGAAACACTCGGAGTGCCTGGTAAGTGAAAT-----TCGT--------T--CCGACTTG----------------------G----------------------------------------------------------------------------------------------TCCGACTCG---------AC--------------T-CCCAGC--GCAGTCCGGGTCCAGGTCGGTCTGCTCTGGGGTATATCTCAGTAGATATAGTATGTGGCAGAGACGTCGCGACTGGTGCCCCAACA----ACAA-CCAAATTGATTA-ATTCTGCAG-----------------------GAG----GGG-----CG----A--------------------CAGA----GGGTG--------------------AG-CTAGC------CGACGACG----------------------ACAGTGGCTGAGAC------------GGTGGCGGTGGCAG--AGGCAGCAAAAGCAAGCAAGTGTAAGTGTACAGAAAACGACGCAAAAGTGAACGGCGAG----GCGACAGAG----------ACGGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................AGAGACGTCGCGACTGGTGCC....................................................................................................................................................................................................................................................................................................................2111.0010000000010
.......................AAATCGCCGAAACACTCGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................T-CCCAGC--GCAGTCCGGGTCC.......................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................TGATTA-ATTCTGCAG-----------------------GAG----GG...............................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................TAGATATAGTATGTGGCAGAG.....................................................................................................................................................................................................................................................................................................................................2111.0010000001000
...............................................CTGGTAAGTGAAAT-----TCGT--------T--CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACG----------------------ACAGTGGCTGAGAC------------GG.....................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................CTGCAG-----------------------GAG----GGG-----CG----A--------------------CAGA----GGGT..................................................................................................................................................................................................2311.0010010000000
...............................GAAACACTCGGAGTGCCTGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100000
........................................................GAAAT-----TCGT--------T--CCGACTTG----------------------G----------------------------------------------------------------------------------------------TC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...................................................................................................................................................................................................................................................................................................................GCAGAGACGTCGCGACTGGTG......................................................................................................................................................................................................................................................................................................................2111.0010000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGCGAG----GCGACAGAG----------ACGG.2111.0010100000000
...................................................................CGT--------T--CCGACTTG----------------------G----------------------------------------------------------------------------------------------TCCGACTC........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................................................................................ACTCG---------AC--------------T-CCCAGC--GCAGTCC.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
....................................................................................................................................................................................................................................................................................................................CAGAGACGTCGCGACTGGTGC.....................................................................................................................................................................................................................................................................................................................2111.0010000000001
..................................................................................................................................................................................................................................................................................................................................................................TTA-ATTCTGCAG-----------------------GAG----GGG-----C........................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGAGAC------------GGTGGCGGTGG............................................................................................1911.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGGCTGAGAC------------GGTGGCGT...............................................................................................2211.0010100000000
............................GCCGAAACACTCGGAGTGCCTGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
.....................................................................................................................................................................................................................................................................................................................AGAGACGTCGCGACTGGTGC.....................................................................................................................................................................................................................................................................................................................2011.0010000000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG--------------------AG-CTAGC------CGACGACG----------------------A................................................................................................................................1911.0010100000000
.................................AACACTCGGAGTGCCTGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510010000000
droPer2
CCGCAAAGCCCAGACATGGAAACAAATCGCCGAAACACTCGGAGTGCCTGGTAAGTGAAAT-----TCGT--------T--CCGACTTG----------------------G----------------------------------------------------------------------------------------------TCCGACTCG---------AC--------------T-CCCAGC--GCAGTCCGGGTCCAGGTCGGTCTGCTCTGGGGTATATCTCAGTAGATATAGTATGTGGCAGAGACGTCGCGACTGGTGCCCCAACA----ACAA-CCAAATTGATTA-ATTCTGCAG-----------------------GAG----GGG-----CG----A--------------------CAGA----GGGTG--------------------AG-CTAGC------CGACGACG----------------------ACAGTGGCTGAGAC------------GGTGGCGGTGGCAG--AGGCAGCAAAAGCAAGCAAGTGTAAGTGTACAGAAAACGACGCAAAAGTGAACGGCGAG----GCGACAGAG----------ACGGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................CTTG----------------------G----------------------------------------------------------------------------------------------TCCGACTCG---------AC--------------T-CCC.........................................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
.......................................................................................................................................................................................................................................................................................................................AGACGTCGCGACTGGTGCCC...................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................................GT--------T--CCGACTTG----------------------G----------------------------------------------------------------------------------------------TCCGACTC........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.....................................................................................CTTG----------------------G----------------------------------------------------------------------------------------------TCCGACTCG---------AC--------------T-CC..........................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................................................................................................................................................................................................................................................................CCAGGTCGGTCTGCTCTGGG.....................................................................................................................................................................................................................................................................................................................................................................2011.001000001
.CGCAAAGCCCAGACATGGAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
..................................................................................................................................................................................................................................................................................................................................................................TTA-ATTCTGCAG-----------------------GAG----GGG-----CG----A--------------------..............................................................................................................................................................................................................2111.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGTGAACGGCGAG----GCGA....................2011.001000010
......................................................................................................................................................................................................................................................................................................................................................................................................................G----A--------------------CAGA----GGGTG--------------------AG-CTAGC------CGT............................................................................................................................................................2111.001000001
.................................AACACTCGGAGTGCCTGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.251100000
droWil2
AAGGAAGGCCCAGACATGGAAGCAAATAGCCGAAACACTTGGTGTGCCTGGTAAGTTAAATGGTCTCTGTCTGGTTATTGG-------------------------------CC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTGATTA-ATTTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAAAAAACGACGCAAAAGTAAACTGCGACAGCGACGACGCAGTAGC--------GGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACTGCGACAGCGACGACG..................2111.00100010
...........................AGCCGAAACACTTGGTGTGCCTGAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000
droVir3
GCGGGCG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCG-G-----CA----G--------------------CA----GG--------------------------------------------------------------------------------------------------------------CGGGCAGAAAAAGCA----------AGTGTACAGA-AACGACGCAAAAGTGAACGGCGAC----GCGGCGGAGACGC-GACAGACGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
GCGTAAGGCGCAGACTTGGAAGCAAATCGCTGAAACACTTGGAGTTAGCGGTAAGTGAAAT-----TTT---AGTGT-TG------------------------------TGAA-ACGGGTGTCCGAAGGGTGCAACCAGCCCATAAGCTGTGTGGCAAGTGAAATTGA-------GTATTGGCCG---CGGAGGCAACTAAGGCAGCTGGC-GC------------------------------CGTCGTCG---------------------------------------------------------------------------TC----------GC-AGC-AAATTGATTAAATTCTGTGTTCGTACACAAGAGAAGAGGCAGAGAGGGTGG-AACGGGTGCAGAATGGGCTGGCAACAGAGGCGACATA----CGACG--------------------AC-ATCGT------CGACAGCG----------------------ACAGCGG--------------------GCGTCGGCAGCAGGCGGGCAGCAAAAGCA----------AGTGTACAGA-AACGACGCAAAAGTGAACGGCGAC----GCGACGGAGACGC-GACAGTCGGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..GTAAGGCGCAGACTTGGAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
....................................................................................................................................................................ATTGA-------GTATTGGCCG---CGGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
GCGTAAGGCGCAGACTTGGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.........................................................AAAT-----TTT---AGTGT-TG------------------------------TGAA-ACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
............................GCTGAAACACTTGGAGTTAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droGri2
GCGCAAAGCACAAACCTGGAAGCAAATCGCCGAAACCCTCGGCGTCAGTGGTAAGTGAAAT-----TTGT--------TGGCCAAATTCAGAAAAATTCACTCAATGTTGCA----------------------------------------GCAGCAAGTGAAATTGGTTAGTGGGTATCAGTCGAGACGAGGG--------TCTGCTG--------------------------------------------TCG--------------------------------------------------------------------CTG-------------C-AGC-AAATTGATTA-ATTCTAAGT----------------AGGCAGAGGGG-CAG-A-----------GCAGGCTAGCAACAG------T--GAGA-CGGCG--------------------AC-ATCGTTCGTCGCGGCAGCAGTAGTAGCAGCGGTGGAAGGCTGCAGCGG--------------------GCGTCGGCAGCAGGCGGGCAGCAAAAGCA----------AGTGTACAGA-AACGACGCAAAAGTGAACGGCGAC----GCAACGGAGACGC-GACAGACGATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:12 AM