ID:

dsi_10166

 Coordinate:

2r:5326157-5326243 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5325045_5326193_-]; exon [2r_5324794_5326193_-]

No Repeatable elements found

Sense Strand Reads

----------------------------------------------------------------------------------------------------#######################################################################################
ATGCAAGCAAGAGAATCAATGAACAAATTTGCGATACCCAAGTAAACATGGTATATTTTCGCGACTGTTTCACGGTCTCTCTAGTCAAAACAACACATAAATGAGGCGATTAAATAATTTAGTGACTTTCTTCACAGCCATAACTGCCTTCTTCTTCGGTAGTTTCATCACAAAGATACTCAGCTCC
**************************************************..............((((.....((((.((.(((((.....................)))))........)).))))......))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
.......................................................................................................................TAGTGACTTTCTTCACAGCCATAA............................................ 24 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................GTCAAAACAACACATAAATGACGCGAT............................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................GATTAAATTATTTAGTGA.............................................................. 18 1 4 0.75 3 0 0 3 0 0 0 0
.........................................................................................................GCGATTGAATGATTTAGTGA.............................................................. 20 2 5 0.40 2 0 0 0 2 0 0 0
..........................................................................................................CGATTAAATTATTTAGTGA.............................................................. 19 1 3 0.33 1 0 0 0 1 0 0 0
............................................AACATGGTTTATGTTCGC............................................................................................................................. 18 2 9 0.22 2 0 0 0 0 2 0 0
....................................................................................................ATGAGGCGATTAATT........................................................................ 15 1 19 0.16 3 0 0 0 0 0 3 0
............................................................................................................ATTAAATTATTTAGTGA.............................................................. 17 1 16 0.06 1 0 0 1 0 0 0 0
....................................................ATACTTTCGCGAATGTTCC.................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

TACGTTCGTTCTCTTAGTTACTTGTTTAAACGCTATGGGTTCATTTGTACCATATAAAAGCGCTGACAAAGTGCCAGAGAGATCAGTTTTGTTGTGTATTTACTCCGCTAATTTATTAAATCACTGAAAGAAGTGTCGGTATTGACGGAAGAAGAAGCCATCAAAGTAGTGTTTCTATGAGTCGAGG
**************************************************..............((((.....((((.((.(((((.....................)))))........)).))))......))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
........................................................................................................................................................AGAAGCCATCAAAGTAGTGTT.............. 21 0 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................ACCACTGAAAGAAGTGTCG................................................. 19 1 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................CGGTACTGACTCAAGAAGA................................ 19 3 17 0.18 3 0 0 3 0 0 0
............................AACGTTATGGGTTCA................................................................................................................................................ 15 1 10 0.10 1 0 0 0 0 1 0
...............................................................................AGATCAGTTTTATTG............................................................................................. 15 1 12 0.08 1 1 0 0 0 0 0
......................................................................................................CGCCGCTAATTTATTAAC................................................................... 18 2 12 0.08 1 0 0 0 1 0 0
......................................................TAAATGCGCTGACAA...................................................................................................................... 15 1 14 0.07 1 1 0 0 0 0 0
...............AGTTACTAGGTTAAGCGCT......................................................................................................................................................... 19 3 14 0.07 1 0 0 0 1 0 0
.............................................................................CGAGATCAGTTTTATTG............................................................................................. 17 2 20 0.05 1 1 0 0 0 0 0
................................................................................................................................................................TCAAAGTAGTGTTTT............ 15 1 20 0.05 1 0 0 0 0 1 0
..CGTTCGATCTCTCAGT......................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/23/2015 at 01:06 PM