ID:

dsi_10139

 Coordinate:

3l:16306416-16306601 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-41.7 -41.6 -41.6

Flybase annnotation

exon [3l_16305497_16306415_+]; CDS [3l_16305497_16306415_+]; CDS [3l_16306602_16306988_+]; exon [3l_16306602_16306988_+]; intron [3l_16306416_16306601_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAACCAGCAAGCTGCAGCAGCGCCAGGAGCTGATCAAGAAATCCGAGTCGGTAAACATATTTGCCAAAAAGCAGGAGGATCCTTTTGAGGATGACGAGTTCTTCAAATCACCGGAGCAGGAACAGGCAATGGATCAGCACAATGATGACGGCGAGGGCGGCAAGTTCCAGTGGAGCGAGGACGCGAACTTTGCAAAGTTCGATGAAAACATGTGATTTGACCAACTGTTTGCCAAGGCATCGGGGCAGCGACCGGATCCGGACATCGATAACCACAACTATGCGGA
**************************************************(((((((..(((((......)))))...(((((....))))).....(((..(((((((((((..((.(((((..((.....((((......))))....((....)).))..))))).))....))....(((((((((....))))))).)).......)))))))))..))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
..................................................................................................................................................................................................................................................................CGGACATCGATAACCACAAC........ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................GACCGGATCCGGACATCG................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
GAACCAGCAAGCTGCAGCAGCGCCAGGA.................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................GATCAAGAAATCCGAGTCGGTAAAC...................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........CTGCAGCAGCGCCAGGAGCT............................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................TTTGCAAAGTTCGATGAAAACATGTGA....................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................GCCAGGAGCTGATCAAGAAATCCGA................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................CCTAGGCATCGGGGC........................................ 15 1 3 0.67 2 0 0 0 0 0 0 2 0 0 0
...............................GATCAAGAAATCCGCGTCTGC.......................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................GCGCCGCGACCGGCTCCGG......................... 19 3 20 0.20 4 0 0 0 0 0 0 0 0 4 0
..........................................................................GAGGATCCATTTGAGG.................................................................................................................................................................................................... 16 1 6 0.17 1 0 0 1 0 0 0 0 0 0 0
................................ATCAAGAAATCCGCGTCTGC.......................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................ATAGAGCGAGGACGCTAAC.................................................................................................. 19 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0
..................................................................................TTTTGACGGTGACCAGTTCT........................................................................................................................................................................................ 20 3 8 0.13 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................CGACCGGTTTCGGAC....................... 15 2 20 0.10 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................GCGAACTTTGAAAAGT........................................................................................ 16 1 12 0.08 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................GGCGTCAAGATACAGTGGA................................................................................................................ 19 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0
...........CTGCAGCAGCGACAGGA.................................................................................................................................................................................................................................................................. 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GCATAGGTCGAGGAAAACA............................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CTTGGTCGTTCGACGTCGTCGCGGTCCTCGACTAGTTCTTTAGGCTCAGCCATTTGTATAAACGGTTTTTCGTCCTCCTAGGAAAACTCCTACTGCTCAAGAAGTTTAGTGGCCTCGTCCTTGTCCGTTACCTAGTCGTGTTACTACTGCCGCTCCCGCCGTTCAAGGTCACCTCGCTCCTGCGCTTGAAACGTTTCAAGCTACTTTTGTACACTAAACTGGTTGACAAACGGTTCCGTAGCCCCGTCGCTGGCCTAGGCCTGTAGCTATTGGTGTTGATACGCCT
**************************************************(((((((..(((((......)))))...(((((....))))).....(((..(((((((((((..((.(((((..((.....((((......))))....((....)).))..))))).))....))....(((((((((....))))))).)).......)))))))))..))))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.........................................................................................................................TGGCCGTTACCTAGTCGAGT................................................................................................................................................. 20 2 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................TTGACCAACGGGACCGTAGCCCC......................................... 23 3 6 0.17 1 1 0 0 0
.............................................................................................................................................................................TCGCTCCTGAGCTTG.................................................................................................. 15 1 18 0.11 2 0 2 0 0
...................................................................................................................................................................................................................................................CCGCCGCCGGCCTAGGCCCG....................... 20 3 11 0.09 1 1 0 0 0
.......................................................................................................................................................GCTTCTGCCGTTCAAGG...................................................................................................................... 17 2 13 0.08 1 0 0 0 1
...............................................................................................CTCGAGAATTTTAGTGG.............................................................................................................................................................................. 17 2 19 0.05 1 0 0 1 0
......................................................................................................AGTTTAGTGGCCTGGC........................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0

Generated: 04/24/2015 at 04:08 AM