ID:

dsi_10121

 Coordinate:

2l:15813534-15813683 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.8 -8.6 -8.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTAAACCTCAAATCTCAAATTGAAATGTATTGGCAACAGTTGTGTAATTTGTATGTATTAATTAATGTAATTTATTGTTATTTTACAATTGGATTCAGCCACACCACAGCGAGCTAAAAAAAATTTGATTTTGTACCTACAGCATATATAAACAGACTTATACGCATATATTTCATTACGAACGGCCCGAATACCCCATTAAATGGTTGTAGAGGGCTTGTCGAAGTAGTTGAAAAATAAACAACATGTT
*****************************************************.((((.(((((((((((..((....))..))))).((((.(((.((.........))))))))).......))))))..)))).....((.((((..........)))).))......................*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 M025
embryo
 M053
female body
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 O001
Testis
.......................................................................................................................................................................................................TAAATGGTTGTAGAGGGCTTGTCGAAG........................ 27 0 1 22.00 22 9 0 12 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTGTCGAAG........................ 28 0 1 16.00 16 9 1 6 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGGTTGTAGAGGGCTTGTCGAAGTAGT.................... 27 0 1 7.00 7 0 6 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CATTAAATGGTTGTAGAGG................................... 19 0 1 6.00 6 0 0 0 0 5 0 0 0 0 0 1 0
...............................................................................................................AGTGAAAAAAACTTTGATTTTGTA................................................................................................................... 24 3 1 6.00 6 0 0 0 0 0 0 0 6 0 0 0 0
...............................................................................................................................................................................................................TGTAGAGGGCTTGTCGAAGTAGTTGAA................ 27 0 1 5.00 5 0 4 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................GCATATATTTCATTACGAACGGCC............................................................... 24 0 1 5.00 5 0 0 0 0 4 0 1 0 0 0 0 0
.......................................................................................................................................................................................................TAAATGGTTGTAGAGGGCTTGTCGA.......................... 25 0 1 5.00 5 0 0 0 4 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................TGGTTGTAGAGGGCTTGTCGAAGTAG..................... 26 0 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAAATGGTTGTAGAGGGCTTGTCGAAGT....................... 28 0 1 3.00 3 1 0 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................ATTAAATGGTTGTAGAGGGCTTGTC............................ 25 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTGTCGA.......................... 26 0 1 3.00 3 0 0 0 1 0 0 0 1 1 0 0 0
.................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGGGCTTGT............................. 28 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................ATATTTCATTACGAACGGCC............................................................... 20 0 1 3.00 3 0 0 0 0 2 0 1 0 0 0 0 0
............................................................................................................................................................................TCATTACGAACGGCCCGAATACCCA..................................................... 25 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTGTCG........................... 25 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................TGTATTAATTAATGTAATTTATTGTTA.......................................................................................................................................................................... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGGGCT................................ 25 0 1 2.00 2 0 0 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGTCGAAGTAGTTGAAAAATAAACAACA.... 29 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CCATTAAATGGTTGTAGAGGGCT................................ 23 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.................AATTGAAATGTATTGGCA....................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................CGAATACCCCATTAAATGGTTGTAGAGG................................... 28 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGTCGAAGTAGTTGAAAAATAAACA....... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................CATTAAATGGTTGTAGAGGGC................................. 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TACCCCATTAAATGGTTGTAGAGGGC................................. 26 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATTAAATGGTTGTAGAGGGCTTGTCGAAG........................ 29 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TGGTTGTAGAGGGCTTGTCGAAG........................ 23 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................GTACCTACAGCATATATAAACAGAC............................................................................................. 25 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 2
...........................................................................................................................................................................................................TGGTTGTAGAGGGCTTGTCGAAGTA...................... 25 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATTAAATGGTTGTAGAGG................................... 18 0 1 2.00 2 0 0 0 0 0 1 0 0 0 0 1 0
..........................................................................................................................................................................................................ATGGTTGTAGAGGGCT................................ 16 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CCCATTAAATGGTTGTAGAGGGCTT............................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGTCGAAGTAGTTGAAAA.............. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................TGGCAACAGTTGTGTAATTTGTATGTA................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................TTCATTACGAACGGCCCG............................................................. 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................TTGTAGAGGGCTTGTCGAAGTAGTTGAAA............... 29 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGGGC................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAAATGGTTGTAGAGGGCTTGTCG........................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................AATTTATTGTTATTTTACAA.................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................TAAATGGTTGTAGAGGGCTTGTC............................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTATTGTTATTTTACAATTCGATTCAGC....................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................CCACAGCGAGCTAAAAAAAATTTGATTTT...................................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGTCGAAGTAGTTGAAA............... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................TTGTGTAATTTGTATGTATTAATT........................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTG.............................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................TAAACAGACTTATACGCATATATTTC............................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................TTAAATGGTTGTAGAGGGC................................. 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................CACACCACAGCGAGCTAAAAAA................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................TGTAGAGGGCTTGTCGAAGTAGTTGAAAA.............. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................TTATTGTTATTTTACAATTGGATTCAGC....................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GTAGAGGGCTTGTCGAAGTAGTTG.................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............CAAATTGAAATGTATTGGCAAC..................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................CACAGCGAGCTAAAAAAAATTTGATTT....................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................TATATTTCATTACGAACGGCCCGAA........................................................... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................TGTCGAAGTAGTTGAAAAATAAACAACA.... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................CGAAGTAGTTGAAAAATAAACAACA.... 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGGGCTT............................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCATTACGAACGGCCCGAATACCCCAT................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCTTGTCGAAGTAGTTGAAAA.............. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................AGCATATATAAACAGACTT........................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................TCATTACGAACGGCCCGAATACCCC..................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................ATTTTACAATTGGATTCAGC....................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGGGCTTG.............................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................TATTTCATTACGAACGGCCCGAATAC........................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTATTTTACAATTGGATTCAGCCA..................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................CATATATTTCATTACGAACGGCC............................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................ATACGCATATATTTCATTACGAACGGC................................................................ 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................TGGTTGTAGAGGGCTTGTCGAAGT....................... 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................TTGGATTCAGCCACACCACA.............................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................GTACCTACAGCATATATAAACAGACT............................................................................................ 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................TGGCAACAGTTGTGTAATTTGTA..................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................AATTTGATTTTGTACCTACAGCAT......................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................TTGTAGAGGGCTTGTCGAAGTAGTTGA................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................TCTACAATTGGATTCAGCCACACCACAGC............................................................................................................................................ 29 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................GTAGAGGGCTTGTCGAAGT....................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................ATTAAATGGTTGTAGAGGGCT................................ 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGTAGAGGGCTTGTCGAAGTAGTTGA................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................ATTGGATTCAGCCACACCACA.............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
........CAAATCTCAAATTGAAATGTATTGGC........................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................CATTAAATGGTTGTAGAG.................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................CATATATTTCATTACGAACGGC................................................................ 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGTAGAGGGCTTGTCGAAGTAGTTC.................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TAAATGGATGTAGAGGGCTTGTC............................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................TGTAGAGGGCTTGTCGAAGTAGT.................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................TGTAGAGGGCTTGTCGAAGTAGTTGAAAAA............. 30 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTGTCGAA......................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................CACACCACAGCGAGCTAAAAAAATT.............................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................GGGGTTGTCGACTTAGTTGAAA............... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................GGTTGTAGAGGGCTTGTC............................ 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
....ACCTCAAATCTCAAATTG.................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.......TCAAATCTCAAATTGAAATGTATTGGC........................................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................ATATAAACAGACTTATACGCATATATTT............................................................................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGTCGAAGTAGTTGATAAATAAACAACA.... 29 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTGTC............................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................ATTGGCAACAGTTGTGTAATT......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................TGTAGAGGGCTTGTCGAAGTAGTTGAAA............... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTATACGCATATATTTCATTACGAACGGC................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................GCTTGTCGAAGTAGTTGAAAAATA........... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............CTCAAATTGAAATGTATTGGCAA...................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................ATGGTTGTAGAGGGCTTGTCGAAGTAG..................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................AATGGTTGTAGAGGGCTTGTCGAAAA....................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AGCGAGCTAAAAAAAATTTGATTTTG..................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................................ATTAAATGGTTGTAGAGGGCTTGTCGAAGT....................... 30 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................ATCAAATGGTTGTAGAGAGC................................. 20 2 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................TTATACGGATATATTTCTT.......................................................................... 19 2 17 0.12 2 0 0 0 0 0 0 1 0 0 0 1 0
....................................................................................................................AAAAAAGTTTTATTTTGGACC................................................................................................................. 21 3 16 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GATTTGGAGTTTAGAGTTTAACTTTACATAACCGTTGTCAACACATTAAACATACATAATTAATTACATTAAATAACAATAAAATGTTAACCTAAGTCGGTGTGGTGTCGCTCGATTTTTTTTAAACTAAAACATGGATGTCGTATATATTTGTCTGAATATGCGTATATAAAGTAATGCTTGCCGGGCTTATGGGGTAATTTACCAACATCTCCCGAACAGCTTCATCAACTTTTTATTTGTTGTACAA
***************************************************************.((((.(((((((((((..((....))..))))).((((.(((.((.........))))))))).......))))))..)))).....((.((((..........)))).))......................***************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
...........................................................................................................................................................................................................ACCAACATCTCCCGAACAGCT.......................... 21 0 1 2.00 2 2 0 0 0 0
..........................................................................................................................................TGTCGTATCGGTTTGTCTGAAT.......................................................................................... 22 3 1 1.00 1 0 0 1 0 0
................................................................................................................................................................................ATGCTCGCCGGGCTTA.......................................................... 16 1 1 1.00 1 0 1 0 0 0
..TTTGGAGTTTAGAGTTTA...................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................ATGCTCGCCGGGCTT........................................................... 15 1 3 0.67 2 0 2 0 0 0
.................................................................................................................................ATACCTGGCTGTCGTATATA..................................................................................................... 20 3 4 0.25 1 0 0 0 1 0
................................................................................................................................................................................ATGCTCGGCGGGCTTA.......................................................... 16 2 20 0.25 5 0 5 0 0 0
................TTGAGCTTTAAATAACCGTTGT.................................................................................................................................................................................................................... 22 3 8 0.13 1 0 1 0 0 0
.................................................................................AAATGTTGACCGAAGTCG....................................................................................................................................................... 18 2 10 0.10 1 0 0 0 1 0
.....................................................................................................................................................................................................................CCCGGACGGCTTCATCAAT.................. 19 3 12 0.08 1 0 0 0 1 0
................................................................................................................................................................................ATGCTTGGCGGGCTTAGCG....................................................... 19 3 12 0.08 1 0 1 0 0 0
.......................................................................................................................................................................................................ATCTACCAAGATCTCC................................... 16 2 20 0.05 1 0 0 0 1 0
...............................................................................................................TCGATTTTTTTTAAGC........................................................................................................................... 16 1 20 0.05 1 0 0 0 0 1
....................................................................................................TGCGGTGTCGCACGAT...................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:15813484-15813733 - dsi_10121 CTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACAATTG-----------------------------------------------GATTCAGCCAC---ACC-------------ACAGC---GA-GCTAAAAA-------A---------AATTT-GA-TTTTGTACCTA-CAGCATATA------TAAACAGAC-TTATACGCAT--AT-ATT-TCATT--ACGAAC-------------GGCCC-GAATACCCCATTAAATGGTTGTAGAGGGCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TAAACAACATG--TT------------
droSec2 scaffold_5:4968420-4968668 - CTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACAATTG-----------------------------------------------GATTCAGCCAC---ACC-------------ACAGC---GA-GCTAAAAA-----------------AATTT-GA-TTTTGTACCTA-CAGCATATA------TAAACAGAC-TTATACGCAT--AT-ATT-TCATT--ACGAAC-------------GGCCC-GAATACCCCATTAAATGGTTGTAGAGGGCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TAAACAACATG--TT------------
dm3 chr2L:16246625-16246881 - CTAAA-------CCTCAAATCTCACA-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-TAAAATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACAATTC-----------------------------------------------GATTCAGCCAC---CCC-------------ATAGC---GA-GCTAAAAA--AAAAAC---------AATTT-AA-TTTTGTACCTA-CAGCATATA------TAAACAGAC-TTATACGCAT--AT-ATT-TAATT--ATGAAC-------------GGCCC-GAATACCCCATTAAATGGTTGTAGAGGGCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TAAACAACATG--TT------------
droEre2 scaffold_4929:7943220-7943460 - CTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACAATTC-----------------------------------------------GATTCCGCCAC---CCC-------------ACACC---AA-GCAAAA--------------------------A-TGTTGTACCTA-CAGCATATA------TAAACAGAC-TTATACGCAT--AT-ATT-TCATT--ATGAAC-------------GGCCC-GATTACCCCATTAAATGGTTGTAGAGGGCTTG----------------TCAAAGTAGTTAAAA----C-----------------------------A----TAAACAACATG--CT------------
droYak3 2L:19084442-19084679 + CTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACAATTC-----------------------------------------------GATTCAGCCAA---CCC-------------ACACC---AA-GCTAAAA------------------------------TGTAACTA-CAGCCTATA------TAAACAGAC-TTATACGCAT--AT-ATT-TCATT--ATGAAC-------------GGCCC-GAATACCCCATTAAATGGTTGTAGAGGGCCTA----------------TGAAAGTAGTTGAAA----A-----------------------------A----TAAACCACATG--CT------------
droEug1 scf7180000404992:183692-183972 + TTAAA-------CTTAAAAACTCAAA-TTT--------AAA---TGTAT-TGGT----ATA---AATTTTG-T--AATTTGTATGTATTAATTAATGTAAATTAT--TGTTATTTTACGATTC-----------------------------------------------GATTCAGCCAC---CCC-------------AAACC---AA-ACTAAAA----AG------------AGTTT-AATTTTTGTACCTA-CAGCATATA------TAGACCGAC-TTATACGCAT--AC-ATT-TAATT--ATGAGC-------------AGC-C-GAATACCCCATTAAATGGTTGTAAAAGGCTCG----------------TCAAAATAGTTAAAA----GCTGTTGTTCTACATT-AAACTGTTCTGGAATTAACAAACAACA-A--AT------------
droBia1 scf7180000302408:1063092-1063368 + TTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AATTGTG-T--AATTTGTATGTATTAATTAATGTAATTTATAATGTTATTTTACGATTC-----------------------------------------------GATTCAGCCAC---CCC-------------ATACC---AA-GCTAAAAA--AAG------------AGTTT-GA-T-TTACACCCA-CAGCAAATA------CAAACAGAC-----ACGCAT--AT-AT--TAATT--ATGAACG------------GGCCC-GTATACCCCATTAAATGGTTGTAGAAGGCTCG----------------TTGAAGTAGAAAAAC----CCTGTTGTTCTGCATT-AAAATATTCTGGAA----TAAACAAAATA--AC------------
droTak1 scf7180000415912:131777-132041 + TTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AATTGTG-T--AATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACGATTC-----------------------------------------------GATTCAGCCAA---CCC-------------ACACC---AA-GCTAAAAA--AAG------------AGTTT-AA-TTTTACACCCT-CAGCATATA------TAAACAGAC-TTATACGCAT--AT-GT--TAATT--ATGAAT-------------AGCCC-GTATACCCCATTAAATGGTTGTAGAAGGCTCG----------------TCAAAGTAGTTGAA-----CCTGTTTTTCTGGATT-AAACTATTCTGGAA-------------------------------
droEle1 scf7180000490579:1128893-1129172 + TTAA--------CCTCAAATCTCAAA-ATG--------AAA---TGTAT-TGGC----AAC---AATTGTG-T--AATTTGTATGTATTAATTAATGTAAATTAT--TGTTATTTTACGATTC-----------------------------------------------GATTCAGCCGC---CCT-------------GTACC---AA-GCTAAAAA--AAG------------AGTTT-AA-TTTTGTACCTA-CAGCATATA------TAAACGGAC-TTATACGCATATAT-ATT-TAATT--ATGAGC-------------GGCCC-ATATACCCCATTAAATGGTTGTAGAAGGCTCG----------------TCAAAGTAGTTAAAT----ACTGTTGTTCTGGAAA-AGACTATTCAGG-A----TAAACAAATTA--AT------------
droRho1 scf7180000779547:7615-7892 - TTAA--------CCTCAAATCTCAAA-ATG--------AAA---TGTAT-TGGC----AAA---AATTGTG-T--AATTTGTATGTATTAATTAATGTAATTTTA--TGTTATTTTACGATTT-----------------------------------------------GATTCAGCCGC---CCC-------------GTACC---AA-GCTAAAAA---AG------------AGTTT-AA-TTTTGTACCTT-CAGCATATA------AAAACAGAC-TTATACGCAT--AT-ATA-AAATT--ATGAGC-------------GGCCC-ATATACCCCATTAAATGGTTGTAGAAGGCTCG----------------TCCAAGTAGTTAAAA----GCTGTTGTTCTGGAAC-AAACTATTCTGGAA----GAACCAAAATA--AT------------
droFic1 scf7180000454078:180918-181188 - TTAAT------TCCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AATTGTG-T--AATTTGTATGTAATAATTAATGTAATTTAA--TGTTATTTTACCATTT-----------------------------------------------GATTCAGTCAC---TCC-------------TACAC---AA-GTTAAAA----AG------------AGTAT-AA-TTTTGTACCTA-AAGCATATA------AAAACAGAC-TTATACGCAA--AT-ACT-TAATT--ATGAGC-------------GACCC-ATATACCCCATTAAATGGTTGTAGAAGGCTCG----------------TCGA----GTAAAAA----ACAGTTGTTCTGGAGC-AACCTATTCTGATA----TAAATA----A--AT------------
droKik1 scf7180000302468:565537-565782 - TTAAA-------CCTTAAATCTCAAA-TTGAATTTGTAACT---TGTAT-TGGCGCATAAC---A--TGTA-G--AATTTGTATGTATTAATTAATGTAATTTAT--TATTATTTTACAATCC-----------------------------------------------GATTCAGCCCA---GCC-------------ACCCC---CA--------------------------AGTTT-AA-TTTTGTAACCA-CGACATATA------GA-ACAGAA--------------------GAGTT--ATGAGC-------------AGCCC-ATATACCCCATTAAATGGTTGTAGAAGGCTCG----------------CCAAAGCAGTTAAAA----ACTATTATTCTGGATC-AAACTATG-----------------------CT------------
droAna3 scaffold_12916:137468-137748 - TTAACCCCAATCCCCCCAATCTCAAC-TTA--------AAA---TGTAT-TGGC----ATC---AATTATG-T--TATTTGTATGTATTAATTAATGTAACTTAT--TATTATTTTACGATTT-----------------------------------------------GATTTCGCCAC---CTT-------------GTC-CGAGAA-GAAAAA-----AG--A---------ATTTT-CA-TTTTGTATCTA-ACGCATATA------TAAACAGAC-TTAAACACAT----------AATT--GTGTGC-------------GACCC-CCATACCCCATTAAATGGTTGTAGAAGGCGCG----------------CCATTGTAGTTGAAA----ACTATTATTCTGGGTC-AAAATGTAATGGAA----TAAACCAAATA--CT------------
droBip1 scf7180000396554:2143031-2143334 + TTAAA-------CCTCCAATCTCAAC-TGTA-------AAA---TGTAT-TGGC----ATTC--AATTATG-T--TATTTGTATGTATTAATTAATGTAACTATTATTATTATTTAACGATTT-----------------------------------------------GATTTCGCCTAATCGCC-ACACCTA-----A-TCCGAAAA-GCAAAGA-----G--A---------ATATT-CG-TTTTGTATCTAATGGCATATATATATGTAAACAGAC-TTAAACACAT--A--------ATTGTGTGTGC-------------GGCCC-GGATACCCCATAAAATGGTTGTAGAAGGTGCG---------CGCGACATCATTGTAGTTGAAA----ACTATTATTCTGGGTC-AAAATATAATGGAA----TAAACCAAATA--CT------------
dp5 4_group1:3581461-3581673 + ATATA-------A--AAAATCTCAAA-TTTAA------TAA---TGTAT-TGGC----ATCC--AATTGTAAT--TTTTTGTATGTATTATTTAATGTAATTTAT--TGTTATTTTATGATTT--CC-------------------------------------------GAAAC--C-------CCCAC-----AAAAA---CC---AATGCTAAAA-----G--AA--------ATTTC-GA-T-TCA---CAA-TACCAT--A------TTCACAGACATTGTAATTAT--AT-AGA-TGATG--TTTAGG-------------GCCCC-AAATACCCCATAAAATGGTTGTAGA--------------------------------------------------------------------------------------------------------
droPer2 scaffold_5:1631641-1631940 - ATATA-------A--AAAATCTCAAA-TTTAA------TAA---TGTAT-TGGC----ATCC--AATTGTAAT--TTTTTGTATGTATTATTTAATGTAATTTAT--TGTTATTTTATGATTT--CC-------------------------------------------GAAAC--C-------CCCAC-----AAAAA---CC---AATGCTAAAA-----G--AA--------ATTTC-GA-T-TCA---CGA-TACCAT--A------TTCACAGACATTGTAATTAT--AT-AGA-TGATG--TTTAGG-------------GCCCC-GAATACCCCATAAAATGGTTGTAGAAAT-GGGCCACCCTCCCAC----GAAACGTAGTTTACATTTACATATTATTCTGGAAACAAA-------AG-A----AAAACAAAATAAGCTACTACTCTGGAA
droWil2 scf2_1100000004521:5137898-5138167 - AAAAA-------AACAAAACAAAAAA-TTTAA------TAG---TTCAT-TGGC----ATTG--AATTGTATG--TAATTGTATGTATTAATTAATGTAATTTAT--T--TATTTTATATTCTCTCCCCGCCCCACTGATGATAGCCCAGATGCATACCCCTATCTTTCTCACACAG-CAC---T----------------CATA---AA-AATGAAAA--AAA--CGATTGAGAAAGTTTAAA-TTTTGTAACTA-T---ATATA------TAAATATAT-ATATATATAT--GATATTCTAAAT--AT--TC-------------AGCCCATAATACCCCATCAAATGGTTGTAGAG-------------------------------------------------------------------------------------------------------
droVir3 scaffold_12723:2851151-2851283 + TAAA--------C----------------G--------AATTCTTGTAT-TGGC----ATCA--AATTGTA-T--TTATTGTATGTATTAATTAATGTAATTTTA--T-TTGTTT---AATTT--CA-------------------------------------------CAA-------A-CC-CAC--------------------AA-GCAAAAACACACG--C---------AATTC-TA-ATTTG-ATTTC-ACGCCCACA------C-------------------------------------------------------------AATA----------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:16118919-16119004 + TTATA-------TAT------TGAAA-TTC--------GCA---TGAAT-TGGC----AACAAAAATTGTA-T--TTATTGTATGTATTAATTAATGTAATTTAT--T-TAATTTTATATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15126:638387-638567 - TTATA-------CCAAAATTCTCACAGTCG--------TAT---CGTATTTGGC----ATC---AATTGTA-T--TTATTGTATGTATTAATTAATGTAATTTAT--T-TTATTTG-TATTTT--CA-------------------------------------------AAA-------A-AA-AAA--------------------A----AAAAA-----A--AAATTAAG--AATTC-----------------------------------------------ACAT-----TT--TATTT--AAAAAAAAACACCTTCCGCCCCAC-GCATACCCCATAAAATGGTTGTAG---------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACAATTG-----------------------------------------------GATTCAGCCAC---ACC-------------ACAGC---GA-GCTAAAAA-------A---------AATTT-GA-TTTTGTACCTA-CAGCATATA------TAAACAGAC-TTATACGCAT--AT-ATT-TCATT--ACGAAC-------------GGCCC-GAATACCCCATTAAATGGTTGTAGAGGGCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TAAACAACATG--TT------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
........................................................................................................................................................................................................................................................................................................................................................TAAATGGTTGTAGAGGGCTTG----------------TCGAAG...........................................................................27122.0022000000912100000000
.......................................................................................................................................................................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTG----------------TCGAAG...........................................................................28116.001600000096000001000
............................................................................................................................................................................................................................................................................................................................................................TGGTTGTAGAGGGCTTG----------------TCGAAGTAGT.......................................................................2717.00700000001000006000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGG......................................................................................................1916.00600500000000100000
................................................................................................................................................................................................................................................................................................................................................................TGTAGAGGGCTTG----------------TCGAAGTAGTTGAA...................................................................2715.00500000000000014000
................................................................................................................................................................................................................................................................................................GCAT--AT-ATT-TCATT--ACGAAC-------------GGCC...................................................................................................................................2415.00501400000000000000
........................................................................................................................................................................................................................................................................................................................................................TAAATGGTTGTAGAGGGCTTG----------------TCGA.............................................................................2515.00500000000010040000
............................................................................................................................................................................................................................................................................................................................................................TGGTTGTAGAGGGCTTG----------------TCGAAGTAG........................................................................2614.00400000000000004000
........................................................................................................................................................................................................................................................................................................................................................TAAATGGTTGTAGAGGGCTTG----------------TCGAAGT..........................................................................2813.00300000011100000000
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGGGCTTG----------------TC...............................................................................2513.00300000000000003000
.......................................................................................................................................................................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTG----------------TCGA.............................................................................2613.00300000000101010000
..................................................................................................................................................................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGGGCTTG----------------T................................................................................2813.00300000000000003000
......................................................................................................................................................................................................................................................................................................AT-ATT-TCATT--ACGAAC-------------GGCC...................................................................................................................................2013.00301200000000000000
.............................................................................................................................................................................................................................................................................................................TCATT--ACGAAC-------------GGCCC-GAATACCCA........................................................................................................................2512.00200000000000002000
.......................................................................................................................................................................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTG----------------TCG..............................................................................2512.00200000000000020000
...................................................................................TGTATTAATTAATGTAATTTAT--TGTTA..............................................................................................................................................................................................................................................................................................................................................................2712.00200000002000000000
..................................................................................................................................................................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGGGCT...................................................................................................2512.00200000001000010000
..........................................................................................................................................................................................................................................................................................................................................................................TTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TAAACAACA..................2912.00200000020000000000
....................................................................................................................................................................................................................................................................................................................................................CCATTAAATGGTTGTAGAGGGCT...................................................................................................2312.00200000000000020000
........................AA-TTG--------AAA---TGTAT-TGGC----A...................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200000020000000000
...........................................................................................................................................................................................................................................................................................................................................C-GAATACCCCATTAAATGGTTGTAGAGG......................................................................................................2812.00200010010000000000
..........................................................................................................................................................................................................................................................................................................................................................................TTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TAAACA.....................2612.00200000020000000000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGGGC....................................................................................................2112.00200000000000002000
................................................................................................................................................................................................................................................................................................................................................TACCCCATTAAATGGTTGTAGAGGGC....................................................................................................2612.00200000000000020000
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGGGCTTG----------------TCGAAG...........................................................................2912.00200000011000000000
............................................................................................................................................................................................................................................................................................................................................................TGGTTGTAGAGGGCTTG----------------TCGAAG...........................................................................2312.00200000001000001000
.........................................................................................................................................................................................................................................................GTACCTA-CAGCATATA------TAAACAGAC-....................................................................................................................................................................................2512.00200002000000000000
............................................................................................................................................................................................................................................................................................................................................................TGGTTGTAGAGGGCTTG----------------TCGAAGTA.........................................................................2512.00200000010000010000
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGG......................................................................................................1812.00200010000000100000
...........................................................................................................................................................................................................................................................................................................................................................ATGGTTGTAGAGGGCT...................................................................................................1612.00200000020000000000
...................................................................................................................................................................................................................................................................................................................................................CCCATTAAATGGTTGTAGAGGGCTT..................................................................................................2511.00100000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................TTG----------------TCGAAGTAGTTGAAA----A-----------------------------................................1911.00100010000000000000
..................................................TGGC----AAC---AGTTGTG-T--AATTTGTATGTA.......................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
...........................................................................................................................................................................................................................................................................................................T-TCATT--ACGAAC-------------GGCCC-G................................................................................................................................1811.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTGTAGAGGGCTTG----------------TCGAAGTAGTTGAAA----..............................................................2911.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGGGC....................................................................................................2411.00100000010000000000
........................................................................................................................................................................................................................................................................................................................................................TAAATGGTTGTAGAGGGCTTG----------------TCG..............................................................................2411.00100000010000000000
..................................................................................................AATTTAT--TGTTATTTTACAA......................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
........................................................................................................................................................................................................................................................................................................................................................TAAATGGTTGTAGAGGGCTTG----------------TC...............................................................................2311.00100000010000000000
.........................................................................................................................................................................................CC-------------ACAGC---GA-GCTAAAAA-------A---------AATTT-GA-TTTT.....................................................................................................................................................................................................................2911.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TG----------------TCGAAGTAGTTGAAA----..............................................................1711.00100000010000000000
..................................................................TTGTG-T--AATTTGTATGTATTAATT.................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTG----------------.................................................................................2211.00100000000000001000
................................................................................................................................................................................................................................................................................TAAACAGAC-TTATACGCAT--AT-ATT-TC...............................................................................................................................................................2611.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................TTAAATGGTTGTAGAGGGC....................................................................................................1911.00101000000000000000
..................................................................................................................................................................................CAC---ACC-------------ACAGC---GA-GCTAAAAA-------A---------..................................................................................................................................................................................................................................2211.00100000000000100000
................................................................................................................................................................................................................................................................................................................................................................TGTAGAGGGCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------................................2911.00100000000000001000
.....................................................................................................TTAT--TGTTATTTTACAATTG-----------------------------------------------GATTCAGC............................................................................................................................................................................................................................................................................................2811.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................GTAGAGGGCTTG----------------TCGAAGTAGTTG.....................................................................2411.00100000000000001000
......................CAAA-TTG--------AAA---TGTAT-TGGC----AAC---..............................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..........................................................................................................................................................................................C-------------ACAGC---GA-GCTAAAAA-------A---------AATTT-GA-TTT......................................................................................................................................................................................................................2711.00100000000010000000
...................................................................................................................................................................................................................................................................................................T--AT-ATT-TCATT--ACGAAC-------------GGCCC-GAA..............................................................................................................................2511.00100000000010000000
...........................................................................................................................................................................................................................................................................................................................................................................TG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TAAACAACA..................2811.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................CGAAGTAGTTGAAA----A-----------------------------A----TAAACAACA..................2511.00100000000001000000
..................................................................................................................................................................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGGGCTT..................................................................................................2611.00100000000000001000
.............................................................................................................................................................................................................................................................................................................TCATT--ACGAAC-------------GGCCC-GAATACCCCAT......................................................................................................................2711.00100000000000010000
........................................................................................................................................................................................................................................................................................................................................................................GCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------................................2111.00101000000000000000
..................................................................................................................................................................................................................................................................AGCATATA------TAAACAGAC-TT..................................................................................................................................................................................1911.00100010000000000000
.............................................................................................................................................................................................................................................................................................................TCATT--ACGAAC-------------GGCCC-GAATACCCC........................................................................................................................2511.00100000000000010000
...............................................................................................................ATTTTACAATTG-----------------------------------------------GATTCAGC............................................................................................................................................................................................................................................................................................2011.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGGGCTTG----------------.................................................................................2711.00100000000000010000
.......................................................................................................................................................................................................................................................................................................T-ATT-TCATT--ACGAAC-------------GGCCC-GAATAC...........................................................................................................................2611.00100000010000000000
.............................................................................................................TTATTTTACAATTG-----------------------------------------------GATTCAGCCA..........................................................................................................................................................................................................................................................................................2411.00100010000000000000
.................................................................................................................................................................................................................................................................................................CAT--AT-ATT-TCATT--ACGAAC-------------GGCC...................................................................................................................................2311.00101000000000000000
............................................................................................................................................................................................................................................................................................ATACGCAT--AT-ATT-TCATT--ACGAAC-------------GGC....................................................................................................................................2711.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................TGGTTGTAGAGGGCTTG----------------TCGAAGT..........................................................................2411.00100000000010000000
........................................................................................................................TTG-----------------------------------------------GATTCAGCCAC---ACC-------------ACA...................................................................................................................................................................................................................................................................2011.00100010000000000000
.........................................................................................................................................................................................................................................................GTACCTA-CAGCATATA------TAAACAGAC-T...................................................................................................................................................................................2611.00100010000000000000
..................................................TGGC----AAC---AGTTGTG-T--AATTTGTA...........................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000001000000
............................................................................................................................................................................................................................................AATTT-GA-TTTTGTACCTA-CAGCAT.......................................................................................................................................................................................................2411.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................TTGTAGAGGGCTTG----------------TCGAAGTAGTTGA....................................................................2711.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................GTAGAGGGCTTG----------------TCGAAGT..........................................................................1911.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGGGCT...................................................................................................2111.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................TGTAGAGGGCTTG----------------TCGAAGTAGTTGA....................................................................2611.00100100000000000000
.......................................................................................................................ATTG-----------------------------------------------GATTCAGCCAC---ACC-------------ACA...................................................................................................................................................................................................................................................................2111.00100000000001000000
...............CAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----....................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAG.......................................................................................................1811.00100100000000000000
.................................................................................................................................................................................................................................................................................................CAT--AT-ATT-TCATT--ACGAAC-------------GGC....................................................................................................................................2211.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................TGTAGAGGGCTTG----------------TCGAAGTAGTTC.....................................................................2511.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................TGTAGAGGGCTTG----------------TCGAAGTAGT.......................................................................2311.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................TGTAGAGGGCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----...........................3011.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTG----------------TCGAA............................................................................2711.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCTTG----------------TC...............................................................................1811.00100000000000100000
....A-------CCTCAAATCTCAAA-TTG--------........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..............TCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.......................................................................................................................................................................................................................................................................ATA------TAAACAGAC-TTATACGCAT--AT-ATT-T................................................................................................................................................................2811.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTG----------------TC...............................................................................2411.00100000001000000000
...............................................AT-TGGC----AAC---AGTTGTG-T--AATT...............................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................TGTAGAGGGCTTG----------------TCGAAGTAGTTGAAA----..............................................................2811.00100000000000001000
..........................................................................................................................................................................................................................................................................................TTATACGCAT--AT-ATT-TCATT--ACGAAC-------------GGC....................................................................................................................................2911.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................GCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TA.........................2411.00101000000000000000
....................CTCAAA-TTG--------AAA---TGTAT-TGGC----AA..................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
...........................................................................................................................................................................................................................................................................................................................................................ATGGTTGTAGAGGGCTTG----------------TCGAAGTAG........................................................................2711.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................AATGGTTGTAGAGGGCTTG----------------TCGAAAA..........................................................................2611.00100000000000001000
..........................................................................................................................................................................................................AGC---GA-GCTAAAAA-------A---------AATTT-GA-TTTTG....................................................................................................................................................................................................................2611.00100000000001000000
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGGGCTTG----------------TCGAAGT..........................................................................3011.00100000001000000000
droSec2
CTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACAATTG-----------------------------------------------GATTCAGCCAC---ACC-------------ACAGC---GA-GCTAAAAA-----------------AATTT-GA-TTTTGTACCTA-CAGCATATA------TAAACAGAC-TTATACGCAT--AT-ATT-TCATT--ACGAAC-------------GGCCC-GAATACCCCATTAAATGGTTGTAGAGGGCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TAAACAACATG--TT------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGG......................................................................................................19119.001925111
..............................................................................................................................................................................................................................................................................................................CATT--ACGAAC-------------GGCCC-GAATACCC.........................................................................................................................2314.0041120
........................................................................................................................................................................................................................................................................................................................................................................GCTTG----------------TCGAAGTAGTTGA....................................................................1813.0031020
........................................................................................................................................................................................................................................................................................................................................................................GCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------................................2113.0030300
...........................................................................................................................................................................................................................................................................................................................................................ATGGTTGTAGAGGGCTTG----------------TC...............................................................................2013.0031110
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGGG.....................................................................................................2012.0020110
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGGGCTTG----------------T................................................................................2512.0021100
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGG......................................................................................................1812.0021010
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGGGCT...................................................................................................2212.0022000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAG.......................................................................................................1812.0020020
........................................................................................................................................................................................................................................................................................................................................................................GCTTG----------------TCGAAGTAGTTGAAA----..............................................................2012.0020110
.................................................................................................................................................................................................................................................................................................................................................ACCCCATTAAATGGTTGTAGAGG......................................................................................................2312.0022000
.........................................................................................................................................................................................................................................................................................................................................................AAATGGTTGTAGAGGGCTTG----------------TCGAAGT..........................................................................2712.0020110
.........................A-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--...................................................................................................................................................................................................................................................................................................................................................................................................2712.0020110
...................................................................................................................................................................................................................................................................................................................................................................AGAGGGCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----...........................2711.0010100
.........................................................................................................................................................................................................................................................................................................................................................................CTTG----------------TCGAAGTAGTTGAA...................................................................1811.0010010
...............................................................................................................................................................................................................................................................................................................................................................................................GAAGTAGTTGAAA----A-----------------------------A----TAAACAACATG--T.............2711.0010010
..................................................................................................................................................................................................................................................................................................AT--AT-ATT-TCATT--ACGAAC-------------GGCC...................................................................................................................................2211.0010010
.............................................GTAT-TGGC----AAC---AGTTGTG-T--...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGA......................................................................................................1911.0010100
......................................................................................................................................................................................................................................................................................................AT-ATT-TCATT--ACGAAC-------------GGC....................................................................................................................................1911.0010010
................................................................................................................................................................................................................................................................................................................................................TACCCCATTAAATGGTTGTAGAGGGCT...................................................................................................2711.0011000
...............................................AT-TGGC----AAC---AGTTGTG-T--A..................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..........................................................................................................................................................................................................................................................................................................................................................................TTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----T..........................2111.0010100
..................................................................................................................................................................................CAC---ACC-------------ACAGC---GA-GCTAAAAA-----------------..................................................................................................................................................................................................................................2111.0010100
........................................A---TGTAT-TGGC----AAC---AGTTGT........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...................................................................................................................................................................................................................................................................................................................................................CCCATTAAATGGTTGTAGAGGGCTTG----------------T................................................................................2711.0010100
........................................................................................................................................................................................ACC-------------ACAGC---GA-GCTAAAAA-----------------AATTT-GA-TTT......................................................................................................................................................................................................................2811.0011000
....................................................................................................................................................................................................................................................................................................................................................................GAGGGCTTG----------------TCGAAGTAGT.......................................................................1911.0010100
..............................................................................................................................................................................................................................................................................................................CATT--ACGAAC-------------GGCCC-GAATACCCC........................................................................................................................2411.0010010
.......................................................................................................................................................................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTG----------------TCGAAGT..........................................................................2911.0010100
..................................................................................................................................................................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGG......................................................................................................2211.0010010
.................................................................................................................................................................................................................................................................................................................................................................GTAGAGGGCTTG----------------TCGAAGTAG........................................................................2111.0010100
...................................................................................................................................................................................................................................................................................................................................................................AGAGGGCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----T..........................2811.0010100
.............................G--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--...................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
..........................................................................................................................................................................................................................................................................................................................................................................TTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TAAAC......................2511.0010010
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCTTG----------------TCGAAGTAGTT......................................................................2711.0010100
......................................................................................................................................................................................................................................................TTTGTACCTA-CAGCATATA------TAAACA........................................................................................................................................................................................2511.0011000
...........................................................................................................................................................................................................................................................................................................T-TCATT--ACGAAC-------------GGCCC-GAATACCCCA.......................................................................................................................2711.0010010
.........................................................................................................................................................................................CC-------------ACAGC---GA-GCTAAAAA-----------------A.................................................................................................................................................................................................................................1811.0010010
......................................................................................................................................................................................................................................................................TATA------TAAACAGAC-TTATACGCAT--........................................................................................................................................................................2311.0010010
................................................................................................................TTTTACAATTG-----------------------------------------------GATTCAGCCAC---AC....................................................................................................................................................................................................................................................................................2411.0010010
......................................AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AA.................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.................................................................................................................................................................................................................A-GCTAAAAA-----------------AATTT-GA-TTTTGTACCT...............................................................................................................................................................................................................2611.0011000
......................................................................................................................................................................................................................................................................................................AT-ATT-TCATT--ACGAAC-------------GGCCC-GAATACC..........................................................................................................................2811.0010100
.......................................................................................................................ATTG-----------------------------------------------GATTCAGCCAC---ACC-------------ACAGC---GA-G..........................................................................................................................................................................................................................................................2611.0010100
....................................................................................................................................................................................................................................................................................................................................................................GAGGGCTTG----------------TCGAAGTAGTTGA....................................................................2211.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................CGAAGTAGTTGAAA----A-----------------------------A----TAAAC......................2111.0010010
............................................................................................................................................................................................................................................................................................ATACGCAT--AT-ATT-TCATT--ACGAAC-------------GGCC...................................................................................................................................2811.0010010
...........................................................................AATTTGTATGTATTAATT.................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.................................................................................................................................................................................................................................................................................................................T--ACGAAC-------------GGCCC-GAATACCC.........................................................................................................................2011.0011000
..................................................................................ATGTATTAATTAATGTAATTTAT--TGTT...............................................................................................................................................................................................................................................................................................................................................................2711.0011000
...............................................AT-TGGC----AAC---AGTTGTG-T--AAT................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.......................................................................................................................................................................................................................................................................................................................................................................GGCTTG----------------TCGAAGTAGTTGA....................................................................1911.0010010
........................................................................................................................................................................................................................................................................................................................................................TAAATGGTTGTAGAGGGC....................................................................................................1811.0010001
....................................................................................................................ACAATTG-----------------------------------------------GATTCAGCCAC---ACC-------------ACAGC---..............................................................................................................................................................................................................................................................2611.0011000
...................................................................................................................................................................................................................................................................................................................................................................AGAGGGCTTG----------------TCGAAGTAGTTGAA...................................................................2411.0010010
.................................................................................................................................................................................................................................................................................................................................................ACCCCATTAAATGGTTGTAGAGGG.....................................................................................................2411.0010001
...........................................................................................................................................................................................................................................................................................................................................................ATGGTTGTAGAGGGCTTG----------------TCGAAGT..........................................................................2511.0011000
...............................................AT-TGGC----AAC---AGTTGTG-T--AATTTGTATG.........................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
......................................AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AAT................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
..........................................................................................................................................................................................................................................................................................................................................................................TTG----------------TCGAAGTAGTTGAAA----A-----------------------------................................1911.0010010
.......................................................................................................................ATTG-----------------------------------------------GATTCAGCCAC---ACC-------------ACAGC---GA-GC.........................................................................................................................................................................................................................................................2711.0010010
.........................................................................................................................................................................................................................................................................................................ATT-TCATT--ACGAAC-------------GGCCC-G................................................................................................................................2011.0010010
............................................................................................................................................................................................................................................................................................ATACGCAT--AT-ATT-TCATT--ACGAAC-------------.......................................................................................................................................2411.0010010
...............CAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----....................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
.................................................................................................................................................................................................................................................................................................................................................................GTAGAGGGCTTG----------------TCGAAGTAGTTGA....................................................................2511.0010010
..............................................................................................................................................................................................................................................................................................................................................................GTTGTAGAGGGCTTG----------------TCGAAG...........................................................................2111.0011000
............................................................................................................................................................................TTCAGCCAC---ACC-------------ACAGC---GA-GC.........................................................................................................................................................................................................................................................2111.0010100
.....................................................................................................................CAATTG-----------------------------------------------GATTCAGCCAC---ACC-------------ACAGC---GA-G..........................................................................................................................................................................................................................................................2811.0011000
...........................................................................................................................................................................................................................................................................................................................................C-GAATACCCCATTAAATGGTTGTAGAGG......................................................................................................2811.0010100
dm3
CTAAA-------CCTCAAATCTCACA-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-TAAAATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACAATTC-----------------------------------------------GATTCAGCCAC---CCC-------------ATAGC---GA-GCTAAAAA--AAAAAC---------AATTT-AA-TTTTGTACCTA-CAGCATATA------TAAACAGAC-TTATACGCAT--AT-ATT-TAATT--ATGAAC-------------GGCCC-GAATACCCCATTAAATGGTTGTAGAGGGCTTG----------------TCGAAGTAGTTGAAA----A-----------------------------A----TAAACAACATG--TT------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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.......................................AA---TGTAT-TGGC----AAC---AGTTGTG-TAAAAT................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................ATACCCCATTAAATGGTTGTAGAGGGC....................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................ATGGTTGTAGAGGGCTTG----------------TC...............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................C-GAATACCCCATTAAATGGTTGTAGAGGG.....................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................C-------------ATAGC---GA-GCTAAAAA--AAAAAC---------A.................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................TA------TAAACAGAC-TTATACGCAT--AT-ATT-T................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TTG--------AAA---TGTAT-TGGC----AAC---AGT...........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................C---CCC-------------ATAGC---GA-GCTAAAAA--A................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACAATTC-----------------------------------------------GATTCCGCCAC---CCC-------------ACACC---AA-GCAAAA--------------------------A-TGTTGTACCTA-CAGCATATA------TAAACAGAC-TTATACGCAT--AT-ATT-TCATT--ATGAAC-------------GGCCC-GATTACCCCATTAAATGGTTGTAGAGGGCTTG----------------TCAAAGTAGTTAAAA----C-----------------------------A----TAAACAACATG--CT------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGG......................................................................................................1918.0081001420
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCTTG----------------TCAAAGTAGT.......................................................................2615.0050000500
......................................................................................................................................................................................................................................................................................................AT-ATT-TCATT--ATGAAC-------------GGC....................................................................................................................................1914.0041010110
.............................................GTAT-TGGC----AAC---AGTTGTG-T--...................................................................................................................................................................................................................................................................................................................................................................................................1914.0040002110
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCTTG----------------TCAAAGTA.........................................................................2414.0040000400
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGG......................................................................................................1813.0031000200
.......................................AA---TGTAT-TGGC----AAC---AGTTGTG-T--...................................................................................................................................................................................................................................................................................................................................................................................................2213.0030100200
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCTTG----------------TCAAAGT..........................................................................2312.0020000200
.............................................GTAT-TGGC----AAC---AGTTGTG-T--A..................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000020
................................................................................................................................................................................................................................................................................................................................................................TGTAGAGGGCTTG----------------TCAAAGT..........................................................................2012.0020100010
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGGG.....................................................................................................2012.0020000110
.........................................................................................................................................................................................................................................................................................................................................................AAATGGTTGTAGAGGGCTT..................................................................................................1911.0010001000
....................................................................................................................................................................................................................................................................................................................................................CCATTAAATGGTTGTAGAG.......................................................................................................1911.0010000100
........................................................................................................................TTC-----------------------------------------------GATTCCGCCAC---CCC-------------ACACC---AA-GC.........................................................................................................................................................................................................................................................2611.0011000000
................................................................................................................................................................................................................................................................................................GCAT--AT-ATT-TCATT--ATGAAC-------------GGCC...................................................................................................................................2411.0010100000
.................................................................................................................................................................................................................................................................................................................T--ATGAAC-------------GGCCC-GATTACCC.........................................................................................................................2011.0010000100
.......................................................................................................................ATTC-----------------------------------------------GATTCCGCCAC---CCC-------------ACACC---..............................................................................................................................................................................................................................................................2311.0011000000
....................CTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGTT..........................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000
.......................................AA---TGTAT-TGGC----AAC---AGTT..........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.........................A-TTG--------AAA---TGTAT-TGGC----AAC---A.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.........................................................................................................................................................................................................................................................GTACCTA-CAGCATATA------TAAACAGAC-TTA.................................................................................................................................................................................2811.0011000000
............................................................C---AGTTGTG-T--AATTTGTATGTATTAATT.................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.............................................GTAT-TGGC----AAC---AGTTGTG-T--AATTTGT............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
..............................................................................................................................................................................................................................................................................................................CATT--ATGAAC-------------GGCCC-GATTACCC.........................................................................................................................2311.0010100000
.............................G--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AATT...............................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.............................G--------AAA---TGTAT-TGGC----AAC---AGTT..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..............................................................................................................................................................................................................................................................TA-CAGCATATA------TAAACAGAC-TTA.................................................................................................................................................................................2311.0011000000
...............................................AT-TGGC----AAC---AGTTGTG-T--AAT................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
.............................G--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--A..................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
......................................................................................................................................................................................................................................................................................................AT-ATT-TCATT--ATGAAC-------------GGCC...................................................................................................................................2011.0010000010
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCTTG----------------TCAAAG...........................................................................2211.0011000000
...................................................................................................................................................................................................................................................................................................................................................................AGAGGGCTTG----------------TCAAAGTAGTTAA....................................................................2311.0010000010
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCTTG----------------TCA..............................................................................1911.0010000100
..............................................................................................................................................................................................................................................................................................................................................................GTTGTAGAGGGCTTG----------------TCAAA............................................................................2011.0011000000
....................................................................................................................................................................................................................................................................................................................ATGAAC-------------GGCCC-GATTACCC.........................................................................................................................1911.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................TTAAAA----C-----------------------------A----TAAACAACATG--CT------------2111.0010000100
......................................AAA---TGTAT-TGGC----AAC---AGTTGTG-T--...................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...............................................................................................................................................................................................................................................................................................................................................................TTGTAGAGGGCTTG----------------TCAAA............................................................................1911.0010001000
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGGG.....................................................................................................1911.0010000010
.......................................................................................................................................................................................................................................................................ATA------TAAACAGAC-TTATACGCAT--AC-.....................................................................................................................................................................2411.0010100000
...............................................AT-TGGC----AAC---AGTTGTG-T--AATTT..............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
....................................................................................................................................................................................................................................................................................................................................................................GAGGGCTTG----------------TCAAAGTAGTT......................................................................2011.0010000010
..........................................................................................................................................................................................................................................................................................................................................................AATGGTTGTAGAGGGCTTG----------------TCAAAGT..........................................................................2611.0010001000
....................CTCAAA-TTG--------AAA---TGTAT-TGGC----....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
...............................................................................................................................................................................CGCCAC---CCC-------------ACACC---AA-GCAAA......................................................................................................................................................................................................................................................2111.0010100000
..........................................................................................................................................................................................................................................................................................................TT-TCATT--ATGAAC-------------GGCCC-GATTA............................................................................................................................2311.0010000100
...............................................AT-TGGC----AAC---AGTTGTG-T--AATTTGTATGT........................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
................................................................................................................................................................................................................................................................................................................................................TACCCCATTAAATGGTTGTAGAGGGCTTG----------------.................................................................................2911.0011000000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAG.......................................................................................................1811.0010000010
..................ATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGC...........................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCTTG----------------TCAAA............................................................................2111.0010000100
............................................................................................................................................................................................................................................................................................ATACGCAT--AT-ATT-TCATT--ATGAAC-------------GGC....................................................................................................................................2711.0010100000
..................................................................................................................................................................................................................................................................................................AT--AT-ATT-TCATT--ATGAAC-------------GG.....................................................................................................................................2011.0010000100
...........................................................AC---AGTTGTG-T--AATTTGTATGTATTAATT.................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.......................................................................................................................................................................................................................................................................................................................................................TTAAATGGTTGTAGAGGGCTTG----------------.................................................................................2211.0011000000
................................................................AGTTGTG-T--AATTTGTATGTATT.....................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
............................................................................................................................................................................................................................................................................................................................................................TGGTTGTAGAGGGCTTG----------------TCAAAGTAGT.......................................................................2711.0010000100
..........................................................AAC---AGTTGTG-T--AATTTGTAC..........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
........................AA-TTG--------AAA---TGTAT-TGGC----A...................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCTTG----------------TCAAAGTAGTT......................................................................2711.0010000100
.............................................GTAT-TGGC----AAC---AGTTGTG-T--AATTTGTAT..........................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000
...........................................................................................................TGTTATTTTACAATTC-----------------------------------------------GATTCCGCCAC---CC....................................................................................................................................................................................................................................................................................2911.0010000001
..................................................................................................................................................................................................................................................................................................................................................................TAGAGGGCTTG----------------TCAAAGTAGT.......................................................................2111.0011000000
..............................................................................................................................................................................................................................................................................................ACGCAT--AT-ATT-TCATT--ATGAAC-------------GGCCC-G................................................................................................................................2811.0011000000
.................................................................................................................................................................................................................................................................................................................T--ATGAAC-------------GGCCC-GATTACCCCATTAAAT.................................................................................................................2811.0010000100
...............................................AT-TGGC----AAC---AGTTGTG-T--AATTTGTAT..........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGGGCTTG----------------TC...............................................................................2611.0010000010
...................................................................................................................................................................................................................................................................................................................................................................AGAGGGCTTG----------------TCAAAGTAGTTAAAA----C-----------------------------................................2611.0010000100
.............................G--------AAA---TGTAT-TGGC----AAC---AGT...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
......................................................................................................................................................................................................................................................................................................AT-ATT-TCATT--ATGAAC-------------GGCCC-GATTACCC.........................................................................................................................2911.0010100000
..............................................................................................................TATTTTACAATTC-----------------------------------------------GATTCCGC............................................................................................................................................................................................................................................................................................2111.0011000000
..............................................................................................................................................................................................................................................................................................................CATT--ATGAAC-------------GGCCC-GATTACCCC........................................................................................................................2411.0010100000
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCTTG----------------TC...............................................................................1811.0010000100
......................................................................G-T--AATTTGTATGTATTAATT.................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.........................................................................................................................................................................................................................................................................................................ATT-TCATT--ATGAAC-------------GGCC...................................................................................................................................1811.0010000010
droYak3
CTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACAATTC-----------------------------------------------GATTCAGCCAA---CCC-------------ACACC---AA-GCTAAAA------------------------------TGTAACTA-CAGCCTATA------TAAACAGAC-TTATACGCAT--AT-ATT-TCATT--ATGAAC-------------GGCCC-GAATACCCCATTAAATGGTTGTAGAGGGCCTA----------------TGAAAGTAGTTGAAA----A-----------------------------A----TAAACCACATG--CT------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGG......................................................................................................1919.00901000080000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGGGC....................................................................................................2114.00402000020000
...........................................................................................................................................................................................................................................................................................................................................C-GAATACCCCATTAAATGGTTGTAGAG.......................................................................................................2713.00301000020000
.................................................................................................................................................................................................................................................................................................................................................ACCCCATTAAATGGTTGTAGAGGGC....................................................................................................2513.00321000000000
..................................................................................................................................................................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAGG......................................................................................................2212.00201100000000
.............................................GTAT-TGGC----AAC---AGTTGTG-T--AATTT..............................................................................................................................................................................................................................................................................................................................................................................................2412.00200001010000
........................................A---TGTAT-TGGC----AAC---AGTTGTG-T--A..................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
................................................................................................................................................................................................................................................................................................................TT--ATGAAC-------------GGCCC-GAATACCC.........................................................................................................................2112.00211000000000
...............................................AT-TGGC----AAC---AGTTGTG-T--AATTT..............................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
.............................................GTAT-TGGC----AAC---AGTTGTG-T--A..................................................................................................................................................................................................................................................................................................................................................................................................2012.00200000020000
..................................................................................................................................................................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAG.......................................................................................................2112.00201000010000
......................................................................................................................................................................................................................................................................................................AT-ATT-TCATT--ATGAAC-------------GGCC...................................................................................................................................2012.00200100010000
..........................................................AAC---AGTTGTG-T--AATTTGTAT..........................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000
..........................................................AAC---AGTTGTG-T--AATTTGTATGT........................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGGGC....................................................................................................2011.00100000010000
...........................................................................................................................................................................................................................................................AACTA-CAGCCTATA------TAAACAGAC-TT..................................................................................................................................................................................2511.00101000000000
...........................................................................................................................................................................................................................................................AACTA-CAGCCTATA------TAAACAG.......................................................................................................................................................................................2111.00101000000000
...........................................................................................................................................................................................................................................................................................................T-TCATT--ATGAAC-------------GGCCC-GA...............................................................................................................................1911.00101000000000
..............................................................................................................................................................................................................................................................................................................CATT--ATGAAC-------------GGCCC-GAAT.............................................................................................................................1911.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGGGCC...................................................................................................2211.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCCTA----------------TGA..............................................................................1911.00101000000000
..............................................TAT-TGGC----AAC---AGTTGTG-T--AAT................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
....................................................................................................................................................................................................................CTAAAA------------------------------TGTAACTA-CAGCCT.......................................................................................................................................................................................................2011.00101000000000
.........................................................................................................................................................................................................................................................................A------TAAACAGAC-TTATACGCAT--........................................................................................................................................................................2011.00100010000000
...............................................................................................................................................................................................................................................................................................................ATT--ATGAAC-------------GGCCC-GAATACCC.........................................................................................................................2211.00101000000000
......................................................................G-T--AATTTGTATGTATTAATTAAT..............................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.....................................................................................................................................................................................................................TAAAA------------------------------TGTAACTA-CAGCC........................................................................................................................................................................................................1811.00100100000000
..............................................................................................................................................................................................................................................................................................................CATT--ATGAAC-------------GGCCC-GAATACCC.........................................................................................................................2311.00100000010000
................................................................................................................................................................................................................................................................................................................TT--ATGAAC-------------GGCCC-GAATAC...........................................................................................................................1911.00101000000000
.............................................GTAT-TGGC----AAC---AGTTGTG-T--...................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..........................................................................................................................................................................................................................................................................................................................................CC-GAATACCCCATTAAATG................................................................................................................1911.00101000000000
.............................G--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--A..................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.....................TCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGT...........................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................TTGTAGAGGGCCTA----------------TGAAAGT..........................................................................2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGGGCCTA----------------T................................................................................2511.00101000000000
.................................................................GTTGTG-T--AATTTGTATGT........................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................GAGGGCCTA----------------TGAAAGTAGTTGA....................................................................2211.00100000010000
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGG......................................................................................................1811.00110000000000
............................................................................................................GTTATTTTACAATTC-----------------------------------------------GATT................................................................................................................................................................................................................................................................................................1911.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAGGG.....................................................................................................2011.00100000010000
.....................................................................................................................................................................................................................TAAAA------------------------------TGTAACTA-CAGCCTAT.....................................................................................................................................................................................................2111.00101000000000
..................................................................................................AATTTAT--TGTTATTTTACA.......................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.......................................................................................................................................................................................................................................................................ATA------TAAACAGAC-TTATACGCAT--A.......................................................................................................................................................................2311.00101000000000
.....................................................................................................................CAATTC-----------------------------------------------GATTCAGCCAA---CCC-------------ACACC---A.............................................................................................................................................................................................................................................................2611.00100100000000
.........................................................................................................................................................................................................CACC---AA-GCTAAAA------------------------------TGTAACTA-CA...........................................................................................................................................................................................................2311.00100000010000
..............................................................................................................................................................................................................................................................................................................CATT--ATGAAC-------------GGCCC-GAATACCCC........................................................................................................................2411.00101000000000
..........................................................AAC---AGTTGTG-T--AATTTGTATGTATT.....................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.............................................GTAT-TGGC----AAC---AGTTGTG-T--AATTTGTA...........................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.................................................................................................................................................................................................................A-GCTAAAA------------------------------TGTAACTA-CAGC.........................................................................................................................................................................................................2011.00101000000000
...............................................AT-TGGC----AAC---AGTTGTG-T--AATTTGTAT..........................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
....................CTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGT...........................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
......................CAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGTT..........................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...........................................................................................................................................................................................................................................................................................................................................C-GAATACCCCATTAAATGGTTGTAGAGG......................................................................................................2811.00100000010000
....................................................................GTG-T--AATTTGTATGTATTAATT.................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
...........................................................................................................................................................................................................................................................AACTA-CAGCCTATA------TAAACA........................................................................................................................................................................................2011.00101000000000
.............................G--------AAA---TGTAT-TGGC----AAC---AGTTGTG-T--AAT................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
............................................................................................................GTTATTTTACAATTC-----------------------------------------------GATTCAGC............................................................................................................................................................................................................................................................................................2311.00101000000000
....................................................................................................................................................................................................................................................................................................................ATGAAC-------------GGCCC-GAATACCCCATTAAAT.................................................................................................................2711.00100000100000
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAGGGCCTA----------------TGAAAGTAGT.......................................................................2611.00100000010000
...................................................................................................................TACAATTC-----------------------------------------------GATTCAGCCAA---C.....................................................................................................................................................................................................................................................................................2011.00101000000000
..................................................................................................................................................................................................................................................................................................AT--AT-ATT-TCATT--ATGAAC-------------GGCCC-GAATAC...........................................................................................................................2911.00100100000000
......................................................................................................................................................................................................................................................................................................................................................ATTAAATGGTTGTAGAGGG.....................................................................................................1911.00100000010000
............................................................................................................................................................................TTCAGCCAA---CCC-------------ACACC---AA-GCTAAA.....................................................................................................................................................................................................................................................2511.00101000000000
......................CAAA-TTG--------AAA---TGTAT-TGGC----AAC---AGT...........................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................TTGTATGTATTAATTAAT..............................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.............................................................................................................................................................................................................................................................CTA-CAGCCTATA------TAAACAGAC-TT..................................................................................................................................................................................2311.00101000000000
.........................A-TTG--------AAA---TGTAT-TGGC----AAC---AGTT..........................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGTAGTTGAAA----A-----------------------------A----TAAACC.....................1911.00100000100000
............................TG--------AAA---TGTAT-TGGC----AAC---AGTT..........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
TTAAA-------CTTAAAAACTCAAA-TTT--------AAA---TGTAT-TGGT----ATA---AATTTTG-T--AATTTGTATGTATTAATTAATGTAAATTAT--TGTTATTTTACGATTC-----------------------------------------------GATTCAGCCAC---CCC-------------AAACC---AA-ACTAAAA----AG------------AGTTT-AATTTTTGTACCTA-CAGCATATA------TAGACCGAC-TTATACGCAT--AC-ATT-TAATT--ATGAGC-------------AGC-C-GAATACCCCATTAAATGGTTGTAAAAGGCTCG----------------TCAAAATAGTTAAAA----GCTGTTGTTCTACATT-AAACTGTTCTGGAATTAACAAACAACA-A--AT------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AATTGTG-T--AATTTGTATGTATTAATTAATGTAATTTATAATGTTATTTTACGATTC-----------------------------------------------GATTCAGCCAC---CCC-------------ATACC---AA-GCTAAAAA--AAG------------AGTTT-GA-T-TTACACCCA-CAGCAAATA------CAAACAGAC-----ACGCAT--AT-AT--TAATT--ATGAACG------------GGCCC-GTATACCCCATTAAATGGTTGTAGAAGGCTCG----------------TTGAAGTAGAAAAAC----CCTGTTGTTCTGCATT-AAAATATTCTGGAA----TAAACAAAATA--AC------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTAAA-------CCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AATTGTG-T--AATTTGTATGTATTAATTAATGTAATTTAT--TGTTATTTTACGATTC-----------------------------------------------GATTCAGCCAA---CCC-------------ACACC---AA-GCTAAAAA--AAG------------AGTTT-AA-TTTTACACCCT-CAGCATATA------TAAACAGAC-TTATACGCAT--AT-GT--TAATT--ATGAAT-------------AGCCC-GTATACCCCATTAAATGGTTGTAGAAGGCTCG----------------TCAAAGTAGTTGAA-----CCTGTTTTTCTGGATT-AAACTATTCTGGAA-------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTAA--------CCTCAAATCTCAAA-ATG--------AAA---TGTAT-TGGC----AAC---AATTGTG-T--AATTTGTATGTATTAATTAATGTAAATTAT--TGTTATTTTACGATTC-----------------------------------------------GATTCAGCCGC---CCT-------------GTACC---AA-GCTAAAAA--AAG------------AGTTT-AA-TTTTGTACCTA-CAGCATATA------TAAACGGAC-TTATACGCATATAT-ATT-TAATT--ATGAGC-------------GGCCC-ATATACCCCATTAAATGGTTGTAGAAGGCTCG----------------TCAAAGTAGTTAAAT----ACTGTTGTTCTGGAAA-AGACTATTCAGG-A----TAAACAAATTA--AT------------SizeHit CountTotal NormTotal
No Reads
droRho1
TTAA--------CCTCAAATCTCAAA-ATG--------AAA---TGTAT-TGGC----AAA---AATTGTG-T--AATTTGTATGTATTAATTAATGTAATTTTA--TGTTATTTTACGATTT-----------------------------------------------GATTCAGCCGC---CCC-------------GTACC---AA-GCTAAAAA---AG------------AGTTT-AA-TTTTGTACCTT-CAGCATATA------AAAACAGAC-TTATACGCAT--AT-ATA-AAATT--ATGAGC-------------GGCCC-ATATACCCCATTAAATGGTTGTAGAAGGCTCG----------------TCCAAGTAGTTAAAA----GCTGTTGTTCTGGAAC-AAACTATTCTGGAA----GAACCAAAATA--AT------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTAAT------TCCTCAAATCTCAAA-TTG--------AAA---TGTAT-TGGC----AAC---AATTGTG-T--AATTTGTATGTAATAATTAATGTAATTTAA--TGTTATTTTACCATTT-----------------------------------------------GATTCAGTCAC---TCC-------------TACAC---AA-GTTAAAA----AG------------AGTAT-AA-TTTTGTACCTA-AAGCATATA------AAAACAGAC-TTATACGCAA--AT-ACT-TAATT--ATGAGC-------------GACCC-ATATACCCCATTAAATGGTTGTAGAAGGCTCG----------------TCGA----GTAAAAA----ACAGTTGTTCTGGAGC-AACCTATTCTGATA----TAAATA----A--AT------------SizeHit CountTotal NormTotal
No Reads
droKik1
TTAAA-------CCTTAAATCTCAAA-TTGAATTTGTAACT---TGTAT-TGGCGCATAAC---A--TGTA-G--AATTTGTATGTATTAATTAATGTAATTTAT--TATTATTTTACAATCC-----------------------------------------------GATTCAGCCCA---GCC-------------ACCCC---CA--------------------------AGTTT-AA-TTTTGTAACCA-CGACATATA------GA-ACAGAA--------------------GAGTT--ATGAGC-------------AGCCC-ATATACCCCATTAAATGGTTGTAGAAGGCTCG----------------CCAAAGCAGTTAAAA----ACTATTATTCTGGATC-AAACTATG-----------------------CT------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTAACCCCAATCCCCCCAATCTCAAC-TTA--------AAA---TGTAT-TGGC----ATC---AATTATG-T--TATTTGTATGTATTAATTAATGTAACTTAT--TATTATTTTACGATTT-----------------------------------------------GATTTCGCCAC---CTT-------------GTC-CGAGAA-GAAAAA-----AG--A---------ATTTT-CA-TTTTGTATCTA-ACGCATATA------TAAACAGAC-TTAAACACAT----------AATT--GTGTGC-------------GACCC-CCATACCCCATTAAATGGTTGTAGAAGGCGCG----------------CCATTGTAGTTGAAA----ACTATTATTCTGGGTC-AAAATGTAATGGAA----TAAACCAAATA--CT------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAAGGCGC..................................................................................................2314.004210010
..................................................................................................................................................................................................................................................................................................................................................CCCCATTAAATGGTTGTAGAAGGCGC..................................................................................................2612.002010100
......CCAATCCCCCCAATCTCAAC-T..................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002200000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAAGGCGCG----------------CC...............................................................................2612.002001010
..................................................................................................................................................................................................................................................................................................AT----------AATT--GTGTGC-------------GACCC-CCATA............................................................................................................................2212.002100010
...........................................................................................................................................................................................................................................................................................................................................................................................................A----ACTATTATTCTGGGTC-AA...........................................1911.001000010
.................................................................................................................................................................................................................................................................................................CAT----------AATT--GTGTGC-------------GACCC-CC...............................................................................................................................2011.001010000
............................................................................................................................................................................................................................................................................................................................................................TGGTTGTAGAAGGCGCG----------------CCATTGTAGT.......................................................................2711.001100000
..............................................................................................................................................................................................................................................................................................................................................................GTTGTAGAAGGCGCG----------------CCATT............................................................................2011.001000010
........AATCCCCCCAATCTCAAC-T..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..AACCCCAATCCCCCCAATCTCAAC-TTA--------AA......................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAAGGCGCG----------------CCATTGT..........................................................................2311.001000010
...................................................................................................................................................................................................................................................................................................................................................................AGAAGGCGCG----------------CCATTGTAGTTGA....................................................................2311.001100000
.........................................................................................................................................................................................................................................................................A------TAAACAGAC-TTAAACACAT----------AATT--GT........................................................................................................................................................2611.001010000
............................................................................................................................................................................................................................................................................................................................................................................G----------------CCATTGTAGTTGAAA----ACTATTATTCC...................................................2711.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAAA----ACTATTATTCTGGGTC-.............................................2411.001100000
..........................................................................................................................................................................................................................................................................................................................................................AATGGTTGTAGAAGGCGC..................................................................................................1811.001010000
...................TCTCAAC-TTA--------AAA---TGTAT-TGGC----AT..................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
..............................................................................................................................................................................................................................................................................................................AATT--GTGTGC-------------GACCC-CCAC.............................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................TGTAGAAGGCGCG----------------CCATTGTAG........................................................................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TATTCTGGGTC-AAAATGTAATGGA................................2411.001000010
............................................................................................................................................................................................................................................................................................................................................................................G----------------CCATTGTAGTTGAAA----AC............................................................1811.001010000
...........................................................TC---AATTATG-T--TATTTGTATGTATTAAT..................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
...................................................................................................................................................................................................................................................................................................................................................................AGAAGGCGCG----------------CCATTGTAGTC......................................................................2111.001010000
....................................................................................................................................................................................C---CTT-------------GTC-CGAGAA-GAAAAA-----AG--A---------ATTTT-............................................................................................................................................................................................................................2711.001000001
...............................................................................................................................................................................................................................................................................................................ATT--GTGTGC-------------GACCC-CCATACC..........................................................................................................................2111.001100000
.............................................GTAT-TGGC----ATC---AATTATG-T--TATTTGTAT..........................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................GAAA----ACTATTATTCTGGGTC-.............................................2011.001010000
..........................................................................................................................................................................GATTTCGCCAC---CTT-------------GTC-CG................................................................................................................................................................................................................................................................1911.001010000
.................AATCTCAAC-TTA--------AAA---TGTAT-TGGC----ATC---..............................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAAGGCGCG----------------CCATTGTAGT.......................................................................2611.001100000
.............................................................................................................................................................................................................................................................................................................................................................GGTTGTAGAAGGCGCG----------------CCATTGTAGTT......................................................................2711.001100000
..................................................................................................................TTACGATTT-----------------------------------------------GATTTCGCCAC---CTT-------------GTC-..................................................................................................................................................................................................................................................................2611.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................TTGAAA----ACTATTATTCTGGGTC-.............................................2211.001010000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAAGGC....................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................ACCCCATTAAATGGTTGTAGAAGGCGC..................................................................................................2711.001001000
..........................................................................................................................................................................................................................................................................................................................................................AATGGTTGTAGAAGGCGCG----------------CCATT............................................................................2411.001010000
..................................................................................................................................................................................................................................................................................................AT----------AATT--GTGTGC-------------GACCC-CCATACCC.........................................................................................................................2511.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAA----ACTATTATTCTGGGT...............................................2211.001001000
...............................................................................................................................................................................................................................................................................................................ATT--GTGTGC-------------GACCC-CCATAC...........................................................................................................................2011.001100000
...................................................................................................................TACGATTT-----------------------------------------------GATTTCGCCAC---CTT-------------GTC-C.................................................................................................................................................................................................................................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................................................................CATTAAATGGTTGTAGAAGGCGCG----------------CCAT.............................................................................2811.001010000
..AACCCCAATCCCCCCAATCTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
droBip1
TTAAA-------CCTCCAATCTCAAC-TGTA-------AAA---TGTAT-TGGC----ATTC--AATTATG-T--TATTTGTATGTATTAATTAATGTAACTATTATTATTATTTAACGATTT-----------------------------------------------GATTTCGCCTAATCGCC-ACACCTA-----A-TCCGAAAA-GCAAAGA-----G--A---------ATATT-CG-TTTTGTATCTAATGGCATATATATATGTAAACAGAC-TTAAACACAT--A--------ATTGTGTGTGC-------------GGCCC-GGATACCCCATAAAATGGTTGTAGAAGGTGCG---------CGCGACATCATTGTAGTTGAAA----ACTATTATTCTGGGTC-AAAATATAATGGAA----TAAACCAAATA--CT------------SizeHit CountTotal NormTotal
No Reads
dp5
ATATA-------A--AAAATCTCAAA-TTTAA------TAA---TGTAT-TGGC----ATCC--AATTGTAAT--TTTTTGTATGTATTATTTAATGTAATTTAT--TGTTATTTTATGATTT--CC-------------------------------------------GAAAC--C-------CCCAC-----AAAAA---CC---AATGCTAAAA-----G--AA--------ATTTC-GA-T-TCA---CAA-TACCAT--A------TTCACAGACATTGTAATTAT--AT-AGA-TGATG--TTTAGG-------------GCCCC-AAATACCCCATAAAATGGTTGTAGA--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................AA---CC---AATGCTAAAA-----G--AA--------ATTTC-GA-T-TCA---C................................................................................................................................................................................................................2911.0010010000000
.................................................................................................................................................................................................................ATGCTAAAA-----G--AA--------ATTTC-GA-T-T......................................................................................................................................................................................................................2111.0010010000000
......................................................................................................................................................................................................................................................................................................AT-AGA-TGATG--TTTAGG-------------GC.....................................................................................................................................1811.0010010000000
..................................................................................................................TTATGATTT--CC-------------------------------------------GAAAC--C-------CCCA.................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................AT-AGA-TGATG--TTTAGG-------------GCCCC-G................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................................................................................................AGACATTGTAATTAT--AT-AGA-C................................................................................................................................................................2111.0010010000000
..............................AA------TAA---TGTAT-TGGC----ATCC--AATTGT........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
........................................A---TGTAT-TGGC----ATCC--AATTGTA.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
...............................A------TAA---TGTAT-TGGC----ATCC--AATTGT........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................TTATGATTT--CC-------------------------------------------GAAAC--C-------CCCAC-----AA.........................................................................................................................................................................................................................................................................2411.0010100000000
......................................................................................................................................................................................................................................................................................................AT-AGA-TGATG--TTTAGG-------------GCC....................................................................................................................................1911.0010010000000
.............................TAA------TAA---TGTAT-TGGC----ATCC--AATTGTAA......................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
.......................................AA---TGTAT-TGGC----ATCC--AATTGT........................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000000
..........................................................................................................................T--CC-------------------------------------------GAAAC--C-------CCCAC-----AAAAA---CC---AATGC.........................................................................................................................................................................................................................................................2611.0010100000000
.......................AAA-TTTAA------TAA---TGTAT-TGGC----....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010000000
................................................................................................................................................................................................................................................................................................TTAT--AT-AGA-TGATG--TTTAGG-------------GCC....................................................................................................................................2311.0010001000000
droPer2
ATATA-------A--AAAATCTCAAA-TTTAA------TAA---TGTAT-TGGC----ATCC--AATTGTAAT--TTTTTGTATGTATTATTTAATGTAATTTAT--TGTTATTTTATGATTT--CC-------------------------------------------GAAAC--C-------CCCAC-----AAAAA---CC---AATGCTAAAA-----G--AA--------ATTTC-GA-T-TCA---CGA-TACCAT--A------TTCACAGACATTGTAATTAT--AT-AGA-TGATG--TTTAGG-------------GCCCC-GAATACCCCATAAAATGGTTGTAGAAAT-GGGCCACCCTCCCAC----GAAACGTAGTTTACATTTACATATTATTCTGGAAACAAA-------AG-A----AAAACAAAATAAGCTACTACTCTGGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................ACATATTATTCTGGAAACAAA-------AG-A----A..........................2512.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAGCTACTACTCTGGA.1812.002200000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAAGCTACTACTCTGGA.2012.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATAAGCTACTACTCTGGA.2112.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAAATAAGCTACTACTCTGGA.2412.002200000
.........................................................................................................................................................................................................................................................................................................................................................AAATGGTTGTAGAAAT-GGGCC...............................................................................................2112.002200000
..................................................................................................................................................................................................................................................................................................AT--AT-AGA-TGATG--TTTAGG-------------GCCCC-GAA..............................................................................................................................2612.002200000
.........................................................................................................................................................................................................................................................................................................AGA-TGATG--TTTAGG-------------GCCCC-GAAT.............................................................................................................................2311.001000001
.................................................................................................................................................................................................................................................................................................TAT--AT-AGA-TGATG--TTTAGG-------------GC.....................................................................................................................................2111.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................TACATTTACATATTATTCTGGA................................................2211.001001000
....................................................................................................................ATGATTT--CC-------------------------------------------GAAAC--C-------CCCAC-----A..........................................................................................................................................................................................................................................................................2111.001001000
....................................................................................................................................................................................................................................................................CAT--A------TTCACAGACATTGT................................................................................................................................................................................1811.001100000
..................................................................................................................................................................................................................................................................................................AT--AT-AGA-TGATG--TTTAGG-------------GCC....................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................ATTAT--AT-AGA-TGATG--TTTAGG-------------GCCCC-GA...............................................................................................................................2811.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTTACATTTACATATT........................................................2011.001010000
.........................................................................................................................................................................................................................................................................................................AGA-TGATG--TTTAGG-------------GCCCC-GAATAC...........................................................................................................................2511.001000001
..........................................................................................................................T--CC-------------------------------------------GAAAC--C-------CCCAC-----AAAAA---CC---AATGC.........................................................................................................................................................................................................................................................2611.001010000
.......................................................................................................................................................................................................................................................................................................................................................TAAAATGGTTGTAGAAAT-GGG.................................................................................................2111.001001000
.................................................................................................................................................................................................................................................................TACCAT--A------TTCACAGACATTGT................................................................................................................................................................................2111.001010000
................................................................................................................................................................................................................................................C-GA-T-TCA---CGA-TACCAT--A------TTCACAGAC.....................................................................................................................................................................................2611.001100000
................................................................................................................................................................................................................................................................................................................................................TACCCCATAAAATGGTTGTAGAAAT-GG..................................................................................................2711.001010000
.....................................................................................................................................................................................................................................................................................................................................................CATAAAATGGTTGTAGAAAT-G...................................................................................................2111.001001000
...............................................................................................................................................................................................................................................................................................................................................................................ACCCTCCCAC----GAAACGTA.........................................................................1811.001010000
......................................................................................................................................................................................................................AAAA-----G--AA--------ATTTC-GA-T-TCA---CGA-TACCG........................................................................................................................................................................................................2611.001010000
droWil2
AAAAA-------AACAAAACAAAAAA-TTTAA------TAG---TTCAT-TGGC----ATTG--AATTGTATG--TAATTGTATGTATTAATTAATGTAATTTAT--T--TATTTTATATTCTCTCCCCGCCCCACTGATGATAGCCCAGATGCATACCCCTATCTTTCTCACACAG-CAC---T----------------CATA---AA-AATGAAAA--AAA--CGATTGAGAAAGTTTAAA-TTTTGTAACTA-T---ATATA------TAAATATAT-ATATATATAT--GATATTCTAAAT--AT--TC-------------AGCCCATAATACCCCATCAAATGGTTGTAGAG-------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................GAAAA--AAA--CGATTGAGAAAGT...............................................................................................................................................................................................................................2112.00200200
.............................................TCAT-TGGC----ATTG--AATTGT........................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
..........................................................................................................................................................................................................ATA---AA-AATGAAAA--AAA--CGATTGAGAAAGT...............................................................................................................................................................................................................................2911.00100100
.........................................................................................................................................................................................................................AA--AAA--CGATTGAGAAAGTTTAAA-T........................................................................................................................................................................................................................2411.00100010
..................................................................................................................TTATATTCTCTCCCCGCCCCACTGATG.................................................................................................................................................................................................................................................................................................................................2711.00101000
................................................................................................................................................GCCCAGATGCATACCCCTATCTTT......................................................................................................................................................................................................................................................................................................2411.00101000
...........................................................................................................................................................................................................TA---AA-AATGAAAA--AAA--CGATTGAGAA..................................................................................................................................................................................................................................2511.00101000
.........................................................................................................................................................................................................................AA--AAA--CGATTGAGAAAGT...............................................................................................................................................................................................................................1811.00100010
............................TTAA------TAG---TTCAT-TGGC----ATTG--A.............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.............................................TCAT-TGGC----ATTG--AATTGTAT......................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.........................................................................................................................................................................................................................AA--AAA--CGATTGAGAAAGTT..............................................................................................................................................................................................................................1911.00100100
.............................................................G--AATTGTATG--TAATTGTATGTATTAATT.................................................................................................................................................................................................................................................................................................................................................................................2811.00101000
........................................................................................................................................................................................................................AAA--AAA--CGATTGAGAAAGT...............................................................................................................................................................................................................................1911.00100100
...................................................................................................................................................................................................................................GATTGAGAAAGTTTAAA-TTTTGTAACT...............................................................................................................................................................................................................2711.00100010
...................................................................................................ATTTAT--T--TATTTTATATTCTCTCCCCG............................................................................................................................................................................................................................................................................................................................................2711.00100010
droVir3
TAAA--------C----------------G--------AATTCTTGTAT-TGGC----ATCA--AATTGTA-T--TTATTGTATGTATTAATTAATGTAATTTTA--T-TTGTTT---AATTT--CA-------------------------------------------CAA-------A-CC-CAC--------------------AA-GCAAAAACACACG--C---------AATTC-TA-ATTTG-ATTTC-ACGCCCACA------C-------------------------------------------------------------AATA----------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..AA--------C----------------G--------AATTCTTGTAT-TGGC----....................................................................................................................................................................................................................................................................................................................................................................................................................1912.002002000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................C--------------------AA-GCAAAAACACACG--C---------AATTC-TA-AT.......................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TC-TA-ATTTG-ATTTC-ACGCCCACA------C-------------------------------------------------------------................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.......................................ATTCTTGTAT-TGGC----ATCA--AATT..........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AAACACACG--C---------AATTC-TA-AT.......................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
TAAA--------C----------------G--------AATTCTTGTAT-TGGC----ATCA--..............................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AC--------------------AA-GCAAAAACACACG--C---------A.................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................AA-GCAAAAACACACG--C---------AATTC-............................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.......................................ATTCTTGTAT-TGGC----ATCA--AATTGT........................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................TT--CA-------------------------------------------CAA-------A-CC-CAC--------------------AA-GCAAAAACACACG--............................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...A--------C----------------G--------AATTCTTGTAT-TGGC----ATCA--..............................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AA-------A-CC-CAC--------------------AA-GCAAAAACA..................................................................................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
........................................................................................................................................................................................................................AACACACG--C---------AATTC-TA-ATTTG-ATTT...............................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TTC-TA-ATTTG-ATTTC-ACGCC........................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................C-CAC--------------------AA-GCAAAAACACACG--C---------A.................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................C-TA-ATTTG-ATTTC-ACGCCCACA------C-------------------------------------------------------------A...............................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.............................G--------AATTCTTGTAT-TGGC----ATCA--AATTGT........................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
..AA--------C----------------G--------AATTCTTGTAT-TGGC----AT..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.AAA--------C----------------G--------AATTCTTGTAT-TGGC----ATCA--AATT..........................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
TTATA-------TAT------TGAAA-TTC--------GCA---TGAAT-TGGC----AACAAAAATTGTA-T--TTATTGTATGTATTAATTAATGTAATTTAT--T-TAATTTTATATTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................C--------GCA---TGAAT-TGGC----AACAAAAATT..........................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
..ATA-------TAT------TGAAA-TTC--------GCA---TGAAT-............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
...............................................AT-TGGC----AACAAAAATTGTA-T--T..................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................GTATTAATTAATGTAATTTAT--T-T................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................A-TTC--------GCA---TGAAT-TGGC----AACAAAAATTG.........................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..ATA-------TAT------TGAAA-TTC--------GCA---TGAAT-T...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.........................A-TTC--------GCA---TGAAT-TGGC----AAC.................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................GAAA-TTC--------GCA---TGAAT-TGGC----AACAAAAATT..........................................................................................................................................................................................................................................................................................................................................................................................................2911.001100000
droGri2
TTATA-------CCAAAATTCTCACAGTCG--------TAT---CGTATTTGGC----ATC---AATTGTA-T--TTATTGTATGTATTAATTAATGTAATTTAT--T-TTATTTG-TATTTT--CA-------------------------------------------AAA-------A-AA-AAA--------------------A----AAAAA-----A--AAATTAAG--AATTC-----------------------------------------------ACAT-----TT--TATTT--AAAAAAAAACACCTTCCGCCCCAC-GCATACCCCATAAAATGGTTGTAG---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................................................................................................................................................................................................................................................................................................................AACACCTTCCGCCCCAC-GC...............................................................................................................................1912.00220
................................................................AATTGTA-T--TTATTGTATGTATT.....................................................................................................................................................................................................................................................................................................................................................................................2211.00110
..................................................................................................................................................................................................................................................................................................................................TCCGCCCCAC-GCATACCCCA.......................................................................................................................2011.00110

Generated: 05/18/2015 at 11:16 PM