dsi_10113

TAAATATAAAATTGAATACATACAACCCTAGGGCAACATTACGGCAAAAATAACTTCGGTGGTTGCGCCTATAGACAGCAAACAGTTATTGGTCTTACAGCTTTAGTAAAATCTAGTGATTATGATGTGACTGTTTCAAGGTCGGTCAAACTAAATGAGAACTAAGTGCTATCCATATCGGACAACATTCATTGTTCCAGAAGATTAAGCTTCCCCAGGGAACCAAGTCCCTGGAGCTCCATGCCAAGGG ************************************************.....(((.(((((..(((....(((...((((((((((..(((........((((......)))).......)))))))))))))....))))))..)))))..)))((((..((((...(((.....)))...))))....))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	O001 Testis	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M053 female body	M023 head	SRR553485 Chicharo_3 day-old ovaries
....................................................ACTTCGGTGGTTGCGCCTATA.................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
.....................................................................................................................................TTTCAAGTTCGGTCAA.....................................................................................................	16	1	3	0.33	1	0	1	0	0	0	0	0	0
..........................................................GTGGTTGTGCCTATGGAGAGC...........................................................................................................................................................................	21	3	6	0.17	1	0	0	0	0	0	1	0	0
........................................................................................................................TATGCGCTGACTGTTTCAAG..............................................................................................................	20	3	6	0.17	1	0	0	0	0	1	0	0	0
.................................................................................................................................CCTGTTTCAGGGTCGGT........................................................................................................	17	2	7	0.14	1	0	0	1	0	0	0	0	0
................................................................................................................CTAGTGATTTTGATGT..........................................................................................................................	16	1	8	0.13	1	0	1	0	0	0	0	0	0
................................................................................................................................GCCTGTCTCAGGGTCGGT........................................................................................................	18	3	20	0.10	2	0	0	0	2	0	0	0	0
..................................................................................................................................................................................................................TTCCCCAAGGTACCAAG.......................	17	2	13	0.08	1	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................TTCCTGAAGATTAAG.........................................	15	1	13	0.08	1	0	0	0	1	0	0	0	0
....................................................................................................................................GGTTGAAGGTCGGTAAAAC...................................................................................................	19	3	16	0.06	1	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................AAGCTAACCCAGGGAAC...........................	17	2	17	0.06	1	0	0	1	0	0	0	0	0
.................ACATACGACCATAGGACAA......................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	1	0	0	0	0
........................................................................................................................TATGCGCTGACTGTTTCAA...............................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0	0	0
....................................................ACTTCGGTCCTTGCGC......................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	1

ATTTATATTTTAACTTATGTATGTTGGGATCCCGTTGTAATGCCGTTTTTATTGAAGCCACCAACGCGGATATCTGTCGTTTGTCAATAACCAGAATGTCGAAATCATTTTAGATCACTAATACTACACTGACAAAGTTCCAGCCAGTTTGATTTACTCTTGATTCACGATAGGTATAGCCTGTTGTAAGTAACAAGGTCTTCTAATTCGAAGGGGTCCCTTGGTTCAGGGACCTCGAGGTACGGTTCCC ************************************************.....(((.(((((..(((....(((...((((((((((..(((........((((......)))).......)))))))))))))....))))))..)))))..)))((((..((((...(((.....)))...))))....))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M053 female body	M023 head	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	M024 male body	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries
.............................................................................................................................................................................................................................TGGTTCAGGGACCTCGAGGTA........	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
....................ATGTTGGGATCCGGTTG.....................................................................................................................................................................................................................	17	1	1	1.00	1	1	0	0	0	0	0	0	0	0
....................................................................................................................................CAAGGTTCCTGCCAGTTT....................................................................................................	18	2	4	0.75	3	0	0	2	0	0	0	1	0	0
...................................................................................................................................................................................................AGGTCTTCCAATTCGA.......................................	16	1	2	0.50	1	0	0	0	1	0	0	0	0	0
..........................................................................................................................................TCAAGCCAGTTTGATTT...............................................................................................	17	1	2	0.50	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................ACCTCGAGGTACGGCTCC.	18	1	2	0.50	1	0	0	1	0	0	0	0	0	0
....................ATGTTGGGATCCGGTTGTT...................................................................................................................................................................................................................	19	2	2	0.50	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................................AAAGTTCAAGCCAGTT.....................................................................................................	16	1	3	0.33	1	0	0	0	1	0	0	0	0	0
....................ATGTTGGGATCCCGGA......................................................................................................................................................................................................................	16	2	4	0.25	1	1	0	0	0	0	0	0	0	0
....................ATGTTGGGAGTCCGTTG.....................................................................................................................................................................................................................	17	2	5	0.20	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................ACTCTGGATTCGCGATTGG............................................................................	19	3	10	0.20	2	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................ACTCTGGATTCGCGATTGGT...........................................................................	20	3	6	0.17	1	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................TGGAAGGGGTCCTTTGGA.........................	18	3	20	0.15	3	0	0	0	0	0	3	0	0	0
......................................................................TTTCGGTCGTTTGTCAATA.................................................................................................................................................................	19	2	8	0.13	1	0	0	0	0	0	0	0	1	0
.................................................................................................................................................................................................................GAAGGGGTCCTTTGG..........................	15	1	9	0.11	1	0	0	0	0	0	1	0	0	0
.....................................................................................................AAATCATATTAGGACACTAA.................................................................................................................................	20	3	18	0.11	2	1	1	0	0	0	0	0	0	0
......................................................................................................................................AAGTTCAAGCCAGTT.....................................................................................................	15	1	9	0.11	1	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................ACTCTGGATTCGCGAT...............................................................................	16	2	11	0.09	1	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................TTACTCTAGATTCCCGA................................................................................	17	2	11	0.09	1	0	0	0	0	1	0	0	0	0
....................ATGTTGGGTTCCGGTTG.....................................................................................................................................................................................................................	17	2	13	0.08	1	1	0	0	0	0	0	0	0	0
....................ATGTTGGGATGCCTTTG.....................................................................................................................................................................................................................	17	2	13	0.08	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................TGGAAGGGGTCCTTTGG..........................	17	2	20	0.05	1	0	0	0	0	0	1	0	0	0
....................ATGTTGGGATCTCGTG......................................................................................................................................................................................................................	16	2	20	0.05	1	1	0	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	2l:19091863-19092112 +	dsi_10113	TAAATATAAAATTGAATACATACAACCCTAGGGCAACATTACGGCAAAAATAACTTCGGTGGTTGCGCCTATAGACAGCAAACAGTTATTGGTCTTACAGCTTTAGTAAAATCTAGTGA------------------------TTATGATGTGACTGTTTCAAGGTCGGTCAAACTAAATGAGAACTAAGTGCTATCCATATCGGACAA----CATTC------ATTGTTCCAGAAGATTAAGCTTCCCCAGGGAACCAAGTCCCTGGAGCTCCATGCCAAGGG
droSec2	scaffold_7:3169945-3170175 +		A-----------------------------------------------AATAGCTTCGGAGGATTTGCCTCCACCCAGGACACGGTTGTGGGCCTCACCGCCCTCATTAAGTTCGCTGAGAAGTCGGGCTACGAGGCGGCCAAGGTGGAGGTGACCGTTTCCAACAAGGGAAAGCGTGAAAAGACCGAGAAGCTCAACACATCGGAGGAAAATGACCT------GCTGCTCCAGGCTGTCGAGTTCCCACAGGGCACCAAGTCGCTGGAGTTTGAGGCCAAGGG
dm3	chr2L:19557489-19557720 +		AA----------------------------------CATTATGGCAAATATAACTTGGATGGTTTCGCCTATAGACAACAAACAGTTTTGAGTCTTACAGCTTTAGTAAAATCTAATGATAAAGCCAAGTATAGGGCGGCAAATTATGATGTGACTGCTTCAAGGTCGGGCAAACTAAATAAGAACTCATTGCTATTCAAATCGGACC---ACATGCC------AATGTTCCAGAAGATTAAGCTTCCCTAGGGAAGCAACTCC---------CAAGCCAAAAG
droEre2	scaffold_4845:4727234-4727454 -		AG----------------------------------A-----------AATATTTATGGAGAATTTGACTCCAGCCAGAAAACAGTTATTGGTCTTACAGCCTTGGTTGAGTTCGCTGAAAAATGTGGTTACAATCCAAGCGCTTGGGAAGTGAGCATCAGCAATGAAGACATATCCCAAAAATTCG---------TCCTA---------GGCAATCTGACCCAGTTGACCCAGTCGATTAACTTCCCGCCGGCCACCAAATTCCTGGAGGTTCAGGCAAAGGG
droYak3	2R:6058808-6059022 +		AG----------------------------------A-----------AATATTTATGGAGAATTCGACTCCAGCCAGAAAACCGTTATTGGCCTAACAGCTCTGATTGAGTTCGCAGAAAAGTGGGGCTACAATCCGAGCGCCTGGGAACTGAGCATCAGCAACGAAGAGATATCACAAAAATTT------------------ATCAAAAGCAATCT------GTTGACCCAGTCGATTAACTTCCCTCAAGGCACCAAATTCCTGGAGGTTCAGGCAAAGGG
droEug1	scf7180000409463:1868894-1869123 +		A------------------------------------------------ATAGTTTCGGAGGATTCGCCTCTACCCAGGACACAGTTGTGGGTCTCACGGCTCTGATCAAGTTTGCTGAAAAGTCTGGCTACGAGGCAGCCAAATGGGACGTGACTGTTTCCAATAAGGGCAAACGGGAAAAGACCGAAAAGTTAACCACATCGGAGGAGAATGATTT------GCTCCTCCAGACAGTCGAATTCCCGCAAGGTACCAAATCTCTGGAGTTCGAGGCCAAGGG
droBia1	scf7180000302408:471331-471560 +		A------------------------------------------------ATAGCTTCGGTGGATTCGCCTCCAGCCAGGACACGGTCGTGGGTCTCACCGCCCTGATCAAGTTCGCTGAGAAGTCGGGCTACGAGGCGGCCAAATGGGACGTGACCGTTTCCAACAAGGGCAAGCGCGAAAAGACCGAGAAGCTGACCACATCGGAGGAGAATGATCT------GCTGCTGCAGACCGTTGAGTTCCCGCAGGGCACCAAGTCCCTGGAGTTCGAGGCCAAGGG
droTak1	scf7180000415115:955734-955957 -		AG----------------------------------A-----------AATATTTACGGAGAGTTTGACACCAGCCAGAAAAATGTTGTGGGTCTTACAGCGTTAATTATGTTTGCTGAAAAGATTGACTTCAAAGCAATCGATTTGGAAGTTAGCGTCAGCGGTGAGGATAAATCCGATA---------GAGCAGTCTTAAGGTACAGAAAAGATAT------GATAGCCCAGATGATTAGCTTTCCTCAGGGAACCAAGTTCCTGGAGATCCAGGCCAAGGG
droEle1	scf7180000491242:343344-343574 -		A-----------------------------------------------AATAGCTTCGGAGGATTCGGCTCCAGCCAGGACACTGTGGTGGGTCTCACCGCCCTCATAAAGTTCGCCGAGAAGTCGGGCTACAAAGCGGCCAAGTGTGAGGTGACCGTTTCCAACAAGGGCAAGCGCGAGAAGACCGAGAAGCTGACCACATCGGAGGAGAACGATCT------GATGCTCCAGACGGTGGACTTCCCGCAGGGCACCAAGTCCATGGAGTTCGAGGTGAAGGG
droRho1	scf7180000779863:30334-30563 +		A------------------------------------------------ATAGCTTCGGAGGATTCGCCTCCAGCCAGGACACAGTGGTCGGGCTCACCGCCCTGATCAAGTTCGCCGAGAAGTCTGGCTACGAGGCAGCCAAGTGGGAGGTGACCGTCTCCAACAAGGGCAAGCGTGAGAAGACCGAGAAGCTGACCACATCGGAGGAGAACGATCT------GCTGCTCCAGACGGTCGAGTTCCCGCAGGGCACCAAGTCTCTGGAGTTCGAGGCCAAGGG
droFic1	scf7180000454003:24560-24789 -		A------------------------------------------------ATAGCTACGGAGGTTTCGGTTCCAGCCAGGATACAGTTGTGGGTCTATCGGCCCTCATTAAATTCGCCCAGAAATCTGGCTACGAGGCGGCTAAATGTGAAGTGACCGTTTCGAACAAGGGCAAACGCGAAAAGACCGAAAAGCTAAGCACATCGGAGGAGAACGACCT------TCTGCTCCAGACGATCGAATTCCCACAGGGCACCAAGTCCCTCGAGTTCGAGGCTAAGGG
droKik1	scf7180000302382:764495-764724 -		A------------------------------------------------ACAGCTTCGGAGGCTTTGCTTCCACCCAGGACACTGTTGTCGGTCTCACGGCCCTGATCAAGTTCGCCGAGAAGTCTGGCTACGAGGCAGCCAAGTGGGAGCTGACCGTGTCCAACAAGGGCAAGCGCGAGAAGACCGAGAAACTATCCACGTCGGAAGAGAACGATCT------GCTACTCCAAACAGTTGAGTTCCCTCAGGGCACCAAGTCGCTGGAGTTCGAGGCCAAGGG
droAna3	scaffold_12916:12022514-12022743 -		A------------------------------------------------ACAGTTTCGGTGGCTTCGCCTCCAGTCAAGACACCGTTGTCGGTCTCACGGCTCTGATCAAGTTCGCCGAGACATCTGGCTACGAGGCATCCAAGTGGGAGGTCACCGTGACGAACAAGGGAAAACGCGAAAAGACTGAAAAGCTAAAGACCACCGATGAGAACGATCT------CCTGCTCCAGACCGTTGAGTTCCCTCAGGGCTCCAAGTCGCTGGAGTTTGAGGCAAAGGG
droBip1	scf7180000396769:371261-371491 -		A-----------------------------------------------AACAGCTTCGGTGGCTTCGCCTCCAGTCAAGACACGGTCGTCGGACTCACTGCCCTCATCAAGTTCGCCGAGACATCTGGCTACGAGGCATCCAAGTGGGAGGTCACCGTGGCCAACAAGGGAAAACGCGAAAAGACTGAAAAGCTGAATACATCAGATGAGAACGATCT------CCTGCTCCAGACCGTTGAGTTCCCTCAGGGCACCAAGTCGCTGGAGTTTGAAGCTAAGGG
dp5	4_group1:1638806-1639035 -		A------------------------------------------------ATAGTTTTGGAGGGTTTGCCTCCAGCCAGGACACAGTTGTAGGTCTGCAAGCCCTGATCAAGTTCGCTGAGAAGTCGGGCTATGAAGCGGCCAAGTGGGAGGTGAGTGTCTCTAACAAGGGAAAGCGAGAGAAGACCGAGAAACTGAGCGCCACGGAGGAAAACGATCT------GGTGCTGCAGACTGTCGAGTTTCCACAGGGTACCCAGTCACTGGAGTTCGAGGCTAAGGG
droPer2	scaffold_5:3561790-3562019 +		A------------------------------------------------ATAGTTTTGGAGGGTTTGCCTCCAGCCAGGACACAGTTGTAGGTCTGCAAGCCCTGATCAAGTTCGCTGAGAAGTCGGGCTATGAAGCGGCCAAGTGGGAGGTGAGTGTCTCTAACAAGGGAAAGCGAGAGAAGACCGAGAAACTGAGCGCCACGGAGGAAAACGATCT------GGTGCTGCAGACTGTCGAGTTTCCACAGGGTACCCAGTCGCTGGAGTTCGAGGCTAAGGG
droWil2	scf2_1100000004585:3225851-3226080 -		A------------------------------------------------ATAGCTATGGCGGTTTCGCCTCCACACAGGACACCGTGGTGGGCCTTCAGGCTCTTATTCAATTCGCCAAAAAGACAGGCTATGAGGCCGCCAAGTGGCAAGTGAATGTCTCCAATAAGGGATTGCGTGAGAAATCCGAGAAACTATCCATATCGGACGAGAATGACTT------ACTTCTGCAAACTATCGAGTTTCCCCAAGGCACCAAATCCCTTGAATTCCAAGCGAAAGG
droVir3	scaffold_12723:2948373-2948444 +		--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACAACGATTT------GCTGCTGCAAACGGTCGAGTTCCCCCAGGGCACCAAATCGCTGTCCTACGAGGCCAAGGG
droMoj3	scaffold_6500:11018789-11018859 -		G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAACGATTT------GCTACTCCAAACCGTGGAGTTCCCTCAAGGCACCAAGTCGCTGTCGTACGAGTCGAAGGG
droGri2	scaffold_15126:531702-531772 -		G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATGATTT------GCTGCTGCAAACCGTCGAATTCCCGCAGGGCACCAAGTCGCTGTCGTATGAGGCCAAGGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TAAATATAAAATTGAATACATACAACCCTAGGGCAACATTACGGCAAAAATAACTTCGGTGGTTGCGCCTATAGACAGCAAACAGTTATTGGTCTTACAGCTTTAGTAAAATCTAGTGA------------------------TTATGATGTGACTGTTTCAAGGTCGGTCAAACTAAATGAGAACTAAGTGCTATCCATATCGGACAA----CATTC------ATTGTTCCAGAAGATTAAGCTTCCCCAGGGAACCAAGTCCCTGGAGCTCCATGCCAAGGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................ACTTCGGTGGTTGCGCCTATA...................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

A-----------------------------------------------AATAGCTTCGGAGGATTTGCCTCCACCCAGGACACGGTTGTGGGCCTCACCGCCCTCATTAAGTTCGCTGAGAAGTCGGGCTACGAGGCGGCCAAGGTGGAGGTGACCGTTTCCAACAAGGGAAAGCGTGAAAAGACCGAGAAGCTCAACACATCGGAGGAAAATGACCT------GCTGCTCCAGGCTGTCGAGTTCCCACAGGGCACCAAGTCGCTGGAGTTTGAGGCCAAGGG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................AATAGCTTCGGAGGATTTGCCT......................................................................................................................................................................................................................	22	1	6.00	6	0	4	1	1
..............................................................................................................GTTCGCTGAGAAGTCGGGCTACGAGGC...................................................................................................................................................	27	1	5.00	5	2	2	1	0
..............................................................................................................GTTCGCTGAGAAGTCGGGC...........................................................................................................................................................	19	1	5.00	5	0	3	1	1
........................................................................................................................................................................................................................................AGGCTGTCGAGTTCCCACAGGGC.............................	23	1	3.00	3	0	0	1	2
.................................................ATAGCTTCGGAGGATTTGCCT......................................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0
................................................AATAGCTTCGGAGGATTTGCCTC.....................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0
.........................................................................................................................................GGCCAAGGTGGAGGTGACCGTTTC...........................................................................................................................	24	1	2.00	2	0	1	0	1
......................................................................................................................................................GTGACCGTTTCCAACAAGGGA.................................................................................................................	21	1	2.00	2	0	1	0	1
........................................................................................................................................................................................................................................AGGCTGTCGAGTTCCCACAGGGCACC..........................	26	1	2.00	2	0	1	0	1
..........................................................................................................TTAAGTTCGCTGAGAAGTCGGGC...........................................................................................................................................................	23	1	2.00	2	1	0	0	1
...............................................................................................................................................................................................................................................................ACCAAGTCGCTGGAGTTTGAGGC......	23	1	1.00	1	0	0	1	0
..............................................................................................................GTTCGCTGAGAAGTCGGGCTACGA......................................................................................................................................................	24	1	1.00	1	1	0	0	0
..................................................................................................................................................................................................CAACACATCGGAGGAAAATGACCT------............................................................	24	1	1.00	1	0	1	0	0
..................................................TAGCTTCGGAGGATTTGCCTCCACCC................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
.........................................................................................................ATTAAGTTCGCTGAGAAGTCGGG............................................................................................................................................................	23	1	1.00	1	0	1	0	0
..............................................................................................................................................................TTCCAACAAGGGAAAGCGTG..........................................................................................................	20	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................CTCCAGGCTGTCGAGTTCC.....................................	19	1	1.00	1	0	0	0	1
................................................................................................................................................................................................................AAAATGACCT------GCTGCTCCA...................................................	19	1	1.00	1	0	0	0	1
............................................................................................................................................................................................GAAGCTCAACACATCGGAGGAAAATG......................................................................	26	1	1.00	1	1	0	0	0
.......................................................................................................................................GCGGCCAAGGTGGAGGTGACCGTT.............................................................................................................................	24	1	1.00	1	0	0	0	1
.............................................................................................................AGTTCGCTGAGAAGTCGGG............................................................................................................................................................	19	1	1.00	1	0	0	0	1
............................................................................................................................................................................................GAAGCTCAACACATCGGG..............................................................................	18	1	1.00	1	0	0	0	1
...........................................................AGGATTTGCCTCCACCCAG..............................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0
...........................................................................................................................................................................AAGCGTGAAAAGACCGAGA..............................................................................................	19	1	1.00	1	0	0	1	0
...............................................................................................................................................GGTGGAGGTGACCGTTTCCAACAAG....................................................................................................................	25	1	1.00	1	0	0	0	1
A-----------------------------------------------AATAGCTTCGGAGGATTTGCCTCCA...................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1
.................................................................................ACGGTTGTGGGCCTCACCGCCCT....................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
....................................................................................................................................................................CAAGGGAAAGCGTGAAAAGACC..................................................................................................	22	1	1.00	1	0	1	0	0
..............................................................................................................................................AGGTGGAGGTGACCGTTTCCA.........................................................................................................................	21	1	1.00	1	1	0	0	0
..........................................................................................................................................................................................................................................GCTGTCGAGTTCCCACAGGGC.............................	21	1	1.00	1	0	0	1	0
......................................................................................................................................................GTGACCGTTTCCAACAAGG...................................................................................................................	19	1	1.00	1	0	0	1	0
.................................................................................................................................TACGAGGCGGCCAAGGTGGAGGTGA..................................................................................................................................	25	1	1.00	1	0	0	0	1
.........................................................................................................................................GGCCAAGGTGGAGGTGACCGTTT............................................................................................................................	23	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................................CCACAGGGCACCAAGTCGCTGGA...............	23	1	1.00	1	0	1	0	0
................................................................................................................TCGCTGAGAAGTCGGGCTACGAGG....................................................................................................................................................	24	1	1.00	1	1	0	0	0
................................................................................................................................................GTGGAGGTGACCGTTTCCAACAAGG...................................................................................................................	25	1	1.00	1	0	1	0	0
......................................................................................................................................GGCGGCCAAGGTGGAGGT....................................................................................................................................	18	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................CAGGCTGTCGAGTTCCCACAGGGCACC..........................	27	1	1.00	1	0	0	1	0
......................................................TTCGGAGGATTTGCCTCCACCCAGGAC...........................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
........................................................................................................................................................GACCGTTTCCAACAAGGGAAAGCGT...........................................................................................................	25	1	1.00	1	0	1	0	0
...............................................................................................................................................................................GTGAAAAGACCGAGAAGCT..........................................................................................	19	1	1.00	1	0	0	1	0
........................................................................................................CATTAAGTTCGCTGAGAAGTCGGGC...........................................................................................................................................................	25	1	1.00	1	0	1	0	0
.........................................................................................................ATTAAGTTCGCTGAGAAGTCGGGC...........................................................................................................................................................	24	1	1.00	1	0	1	0	0
..................................................................................................................GCTGAGAAGTCGGGCTACGAGGCG..................................................................................................................................................	24	1	1.00	1	1	0	0	0
.........................................................................................................................................GGCCAAGGTGGAGGTGACCGTTTCC..........................................................................................................................	25	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................AAAATGACCT------GCTGCTCCAGGCTGTCG...........................................	27	1	1.00	1	1	0	0	0
.................................................ATAGCTTCGGAGGATTTGCCTCCACCC................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1
............................................................................................................................................CAAGGTGGAGGTGACCGTTTCCAA........................................................................................................................	24	1	1.00	1	0	1	0	0
................................................................................................................................CTACGAGGCGGCCAAGGT..........................................................................................................................................	18	1	1.00	1	0	0	0	1
...................................................AGCTTCGGAGGATTTGCCT......................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
A-----------------------------------------------AATAGCTTCGGAGGATTTGC........................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
..............................................................................................................................................................................................AGCTCAACACATCGGAGGAAAA........................................................................	22	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................CGCTGGAGTTTGAGGCCAAGG.	21	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................................................................ACCAAGTCGCTGGAGTTTGA.........	20	1	1.00	1	0	1	0	0
.....................................................................................................................................................................................................................................................CCCACAGGGCACCAAGTCGCTGGA...............	24	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................................................................................AGTCGCTGGAGTTTGAGGCCA....	21	1	1.00	1	1	0	0	0
..................................................................................................................................................................AACAAGGGAAAGCGTGAAAAGA....................................................................................................	22	1	1.00	1	0	0	1	0
..........................................................................................................................................................................................GAGAAGCTCAACACATCGGAGG............................................................................	22	1	1.00	1	0	1	0	0
.........................................................................................................................................................................GAAAGCGTGAAAAGACCGAGAAG............................................................................................	23	1	1.00	1	0	0	0	1
..................................................................................................................GCTGAGAAGTCGGGCTACGAGGC...................................................................................................................................................	23	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................................................................AGTCGCTGGAGTTTGAGC.......	18	3	0.33	1	0	0	1	0

dm3

AA----------------------------------CATTATGGCAAATATAACTTGGATGGTTTCGCCTATAGACAACAAACAGTTTTGAGTCTTACAGCTTTAGTAAAATCTAATGATAAAGCCAAGTATAGGGCGGCAAATTATGATGTGACTGCTTCAAGGTCGGGCAAACTAAATAAGAACTCATTGCTATTCAAATCGGACC---ACATGCC------AATGTTCCAGAAGATTAAGCTTCCCTAGGGAAGCAACTCC---------CAAGCCAAAAG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................................TTATGATGTGACTGCTTCAA.........................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................TAAGCTTCCCTAGGGAAG...........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................GCAAATTATGATGTGACTGCT.............................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GACAACAAACAGTTTTGAG................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TATGATGTGACTGCTTCAA.........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AG----------------------------------A-----------AATATTTATGGAGAATTTGACTCCAGCCAGAAAACAGTTATTGGTCTTACAGCCTTGGTTGAGTTCGCTGAAAAATGTGGTTACAATCCAAGCGCTTGGGAAGTGAGCATCAGCAATGAAGACATATCCCAAAAATTCG---------TCCTA---------GGCAATCTGACCCAGTTGACCCAGTCGATTAACTTCCCGCCGGCCACCAAATTCCTGGAGGTTCAGGCAAAGGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................................................................................CAGTCGATTAACTTCCCGCCGGC..............................	23	2	8.00	16	0	0	0	0	0	0	16
.......................................................................................................................................................................................................................................CAGTCGATTAACTTCCCGCCGGCCACC..........................	27	2	5.00	10	0	0	0	0	0	0	10
............................................................................................................................GTGGTTACAATCCAAGCGCTTG..........................................................................................................................................	22	2	4.50	9	9	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TCCCGCCGGCCACCAAATTCCTGGAGGA............	28	2	2.50	5	0	0	0	0	0	0	5
............................................................................................................................GTGGTTACAATCCAAGCGCTTGGGAA......................................................................................................................................	26	2	2.50	5	0	0	0	0	0	0	5
.................................................................................................................................................................................................................................TTGACCCAGTCGATTAACTTCCCGC..................................	25	2	2.50	5	0	0	0	0	0	0	5
............................................................................................................................GTGGTTACAATCCAAGCGCTTGGGAAT.....................................................................................................................................	27	2	2.00	4	1	0	0	0	0	0	3
............................................................................................................................GTGGTTACAATCCAAGCGCTTGGG........................................................................................................................................	24	2	1.50	3	3	0	0	0	0	0	0
.......................................................................................................................................................................................................................TCTGACCCAGTTGACCCAGTCGAT.............................................	24	2	1.50	3	3	0	0	0	0	0	0
..............................................................................AAAACAGTTATTGGTCTTACAGCCT.....................................................................................................................................................................................	25	2	1.00	2	2	0	0	0	0	0	0
..............................................................................AAAACAGTTATTGGTCTTACAGCCTT....................................................................................................................................................................................	26	2	1.00	2	2	0	0	0	0	0	0
......................................................................................................................................................................................ATTCG---------TCCTA---------GGCAATCTGACCCAGT..........................................................	26	2	1.00	2	2	0	0	0	0	0	0
....................................................................................................................................................................TGAAGACATATCCCAAAAATTCG---------TCC.....................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................GTGGTTACAATCCAAGCGCTTGGGA.......................................................................................................................................	25	2	1.00	2	1	0	0	0	1	0	0
............................................................................................................................GTGGTTACAATCCAAGCGCTTGGGAAG.....................................................................................................................................	27	2	1.00	2	2	0	0	0	0	0	0
........................................................................................................................................................GAGCATCAGCAATGAAGACATATCCCA.........................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................GTGAGCATCAGCAATGAAGAC.................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................GTGGTTACAATCCAAGCGCTTGG.........................................................................................................................................	23	2	1.00	2	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................CAGTCGATTAACTTCCCGCCGGA..............................	23	2	0.50	1	0	0	0	0	0	0	1
.............................................................................................................................................................................ATCCCAAAAATTCG---------TCCTA---------GGCAATC...................................................................	26	2	0.50	1	0	0	0	0	0	0	1
...............................................................................AAACAGTTATTGGTCTTACAGCCTTGG..................................................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0	0
...............................................................................................................TTCGCTGAAAAATGTGGTTACAATCC...................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0	0
...............................................................................................TACAGCCTTGGTTGAGTTCGCTGAAAAA.................................................................................................................................................................	28	2	0.50	1	1	0	0	0	0	0	0
....................................A-----------AATATTTATGGAGAATTTGACT......................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTGACCCAGTCGATTAACTTCCCGCCGGCC.............................	30	2	0.50	1	0	0	0	0	0	0	1
..............................................................................AAAACAGTTATTGGTCTTACAGC.......................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGTCGATTAACTTCCCGCCGGCCAT...........................	25	2	0.50	1	1	0	0	0	0	0	0
.......................................................................................ATTGGTCTTACAGCCTTGGTTGAGTA...........................................................................................................................................................................	26	2	0.50	1	0	0	0	0	1	0	0
......................................................................................................................................................................................ATTCG---------TCCTA---------GGCAATCTGACCCA............................................................	24	2	0.50	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................TTAACTTCCCGCCGGCCACCAAATTCC...................	27	2	0.50	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGTCGATTAACTTCCCGCCGGC..............................	22	2	0.50	1	1	0	0	0	0	0	0
...............................................................................................................TTCGCTGAAAAATGTGGTTACAATC....................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TCCCGCCGGCCACCAAATTCCTGG................	24	2	0.50	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................TTCG---------TCCTA---------GGCAATCTGACCCAGTTG........................................................	27	2	0.50	1	1	0	0	0	0	0	0
.......................................................................................ATTGGTCTTACAGCCTTGGTTGAGT............................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................TTCG---------TCCTA---------GGCAATCTGACCCAG...........................................................	24	2	0.50	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................AGTTGACCCAGTCGATTAACTTCCCGC..................................	27	2	0.50	1	1	0	0	0	0	0	0
......................................................................................................................................................................................ATTCG---------TCCTA---------GGCAATCTGACCCAT...........................................................	25	2	0.50	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................TTGACCCAGTCGATTAACTTCCCGCCGGC..............................	29	2	0.50	1	1	0	0	0	0	0	0
...........................................................................................................................................................................ATATCCCAAAAATTCG---------TCCTA---------GGCAAG....................................................................	27	2	0.50	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................TGACCCAGTTGACCCAGTCGATTAAC.........................................	26	2	0.50	1	0	1	0	0	0	0	0
.G----------------------------------A-----------AATATTTATGGAGAATTTGACT......................................................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0	0
........................................................................................TTGGTCTTACAGCCTTGGTTGAGTTCGC........................................................................................................................................................................	28	2	0.50	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................TA---------GGCAATCTGACCCAGTTGAC......................................................	22	2	0.50	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGACCCAGTCGATTAACTTCCCGCCGGC..............................	28	2	0.50	1	1	0	0	0	0	0	0
......................................................................................................................................................................AAGACATATCCCAAAAATTCG---------TCC.....................................................................................	24	2	0.50	1	1	0	0	0	0	0	0
..............................................................................AAAACAGTTATTGGTCTTACAGCC......................................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0	0
...............................................................................................................................GTTACAATCCAAGCGCTTGG.........................................................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0
......................................................................................................................................................................................ATTCG---------TCCTA---------GGCAATCTGACCCC............................................................	24	2	0.50	1	1	0	0	0	0	0	0
................................................................................................................................................TGGGAAGTGAGCATCAGC..........................................................................................................................	18	2	0.50	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GTCGATTAACTTCCCGCCGGCCACC..........................	25	2	0.50	1	0	0	0	0	0	1	0
...........................................................................CAGAAAACAGTTATTGGTCTTACAG........................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................CACCAAATTCCTGGAGGTTCAGGCA.....	25	2	0.50	1	1	0	0	0	0	0	0
........................................................................................TTGGTCTTACAGCCTTGGTTGAGT............................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0	0
.................................................................TGACTCCAGCCAGAAAACAGTTATTGGTC..............................................................................................................................................................................................	29	2	0.50	1	1	0	0	0	0	0	0
.............................................................................................................................................................................ATCCCAAAAATTCG---------TCCTA---------GG........................................................................	21	2	0.50	1	1	0	0	0	0	0	0
............................................................................................................................GTGGTTACAATCCAAGCGCTTGGGAAAA....................................................................................................................................	28	2	0.50	1	1	0	0	0	0	0	0
...............................................................................................TACAGCCTTGGTTGAGTTCGCTGAAAAAT................................................................................................................................................................	29	2	0.50	1	1	0	0	0	0	0	0
...........................................................................................................................TGTGGTTACAATCCAAGCGCTTG..........................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0	0
..................................................................GACTCCAGCCAGAAAACAGTTATTGG................................................................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0	0
............................................................................................................................GTGGTTACAATCCAAGCGCTT...........................................................................................................................................	21	2	0.50	1	1	0	0	0	0	0	0

droYak3

AG----------------------------------A-----------AATATTTATGGAGAATTCGACTCCAGCCAGAAAACCGTTATTGGCCTAACAGCTCTGATTGAGTTCGCAGAAAAGTGGGGCTACAATCCGAGCGCCTGGGAACTGAGCATCAGCAACGAAGAGATATCACAAAAATTT------------------ATCAAAAGCAATCT------GTTGACCCAGTCGATTAACTTCCCTCAAGGCACCAAATTCCTGGAGGTTCAGGCAAAGGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................TTCGCAGAAAAGTGGGGCTT.........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEug1

A------------------------------------------------ATAGTTTCGGAGGATTCGCCTCTACCCAGGACACAGTTGTGGGTCTCACGGCTCTGATCAAGTTTGCTGAAAAGTCTGGCTACGAGGCAGCCAAATGGGACGTGACTGTTTCCAATAAGGGCAAACGGGAAAAGACCGAAAAGTTAACCACATCGGAGGAGAATGATTT------GCTCCTCCAGACAGTCGAATTCCCGCAAGGTACCAAATCTCTGGAGTTCGAGGCCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

A------------------------------------------------ATAGCTTCGGTGGATTCGCCTCCAGCCAGGACACGGTCGTGGGTCTCACCGCCCTGATCAAGTTCGCTGAGAAGTCGGGCTACGAGGCGGCCAAATGGGACGTGACCGTTTCCAACAAGGGCAAGCGCGAAAAGACCGAGAAGCTGACCACATCGGAGGAGAATGATCT------GCTGCTGCAGACCGTTGAGTTCCCGCAGGGCACCAAGTCCCTGGAGTTCGAGGCCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AG----------------------------------A-----------AATATTTACGGAGAGTTTGACACCAGCCAGAAAAATGTTGTGGGTCTTACAGCGTTAATTATGTTTGCTGAAAAGATTGACTTCAAAGCAATCGATTTGGAAGTTAGCGTCAGCGGTGAGGATAAATCCGATA---------GAGCAGTCTTAAGGTACAGAAAAGATAT------GATAGCCCAGATGATTAGCTTTCCTCAGGGAACCAAGTTCCTGGAGATCCAGGCCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

A-----------------------------------------------AATAGCTTCGGAGGATTCGGCTCCAGCCAGGACACTGTGGTGGGTCTCACCGCCCTCATAAAGTTCGCCGAGAAGTCGGGCTACAAAGCGGCCAAGTGTGAGGTGACCGTTTCCAACAAGGGCAAGCGCGAGAAGACCGAGAAGCTGACCACATCGGAGGAGAACGATCT------GATGCTCCAGACGGTGGACTTCCCGCAGGGCACCAAGTCCATGGAGTTCGAGGTGAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

A------------------------------------------------ATAGCTTCGGAGGATTCGCCTCCAGCCAGGACACAGTGGTCGGGCTCACCGCCCTGATCAAGTTCGCCGAGAAGTCTGGCTACGAGGCAGCCAAGTGGGAGGTGACCGTCTCCAACAAGGGCAAGCGTGAGAAGACCGAGAAGCTGACCACATCGGAGGAGAACGATCT------GCTGCTCCAGACGGTCGAGTTCCCGCAGGGCACCAAGTCTCTGGAGTTCGAGGCCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

A------------------------------------------------ATAGCTACGGAGGTTTCGGTTCCAGCCAGGATACAGTTGTGGGTCTATCGGCCCTCATTAAATTCGCCCAGAAATCTGGCTACGAGGCGGCTAAATGTGAAGTGACCGTTTCGAACAAGGGCAAACGCGAAAAGACCGAAAAGCTAAGCACATCGGAGGAGAACGACCT------TCTGCTCCAGACGATCGAATTCCCACAGGGCACCAAGTCCCTCGAGTTCGAGGCTAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

A------------------------------------------------ACAGCTTCGGAGGCTTTGCTTCCACCCAGGACACTGTTGTCGGTCTCACGGCCCTGATCAAGTTCGCCGAGAAGTCTGGCTACGAGGCAGCCAAGTGGGAGCTGACCGTGTCCAACAAGGGCAAGCGCGAGAAGACCGAGAAACTATCCACGTCGGAAGAGAACGATCT------GCTACTCCAAACAGTTGAGTTCCCTCAGGGCACCAAGTCGCTGGAGTTCGAGGCCAAGGG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A------------------------------------------------ACAGTTTCGGTGGCTTCGCCTCCAGTCAAGACACCGTTGTCGGTCTCACGGCTCTGATCAAGTTCGCCGAGACATCTGGCTACGAGGCATCCAAGTGGGAGGTCACCGTGACGAACAAGGGAAAACGCGAAAAGACTGAAAAGCTAAAGACCACCGATGAGAACGATCT------CCTGCTCCAGACCGTTGAGTTCCCTCAGGGCTCCAAGTCGCTGGAGTTTGAGGCAAAGGG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................TTCGCCTCCAGTCAAGACACC........................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................GATCT------CCTGCTCCAGACCGTTGAGTT.......................................	26	1	2.00	2	0	0	0	0	0	2
..................................................................................................................................................................................................................................................GTTCCCTCAGGGCTCCAAGTCGCTGGA...............	27	1	2.00	2	1	1	0	0	0	0
......................................................................................................................................................................................................................................CCAGACCGTTGAGTTCCCTCAGGGC.............................	25	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................GTGGGAGGTCACCGTGACG..........................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................AAAGACCACCGATGAGAAC.......................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................GACGAACAAGGGAAAACGC...........................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...........................................................................................................CAAGTTCGCCGAGACATCTGGCG..........................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................CACCGTGACGAACAAGGGAAAAC.............................................................................................................	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................GTCGCTGGAGTTTGAGGCAAAGG.	23	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................GCATCCAAGTGGGAGGTCACCGT..............................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.................................................ACAGTTTCGGTGGCTTCGCCTCC....................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
................................................................................CACCGTTGTCGGTCTCACGGCTCTGA..................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0
............................................................GGCTTCGCCTCCAGTCAAGACACCGTT.....................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................AGTTCCCTCAGGGCTCCAAGT......................	21	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................ATCCAAGTGGGAGGTCACCGTGAC...........................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................CCAAGTCGCTGGAGTTTGAGGC......	22	1	1.00	1	0	0	0	0	0	1
..................................................................................CCGTTGTCGGTCTCACGGCT......................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................AAGTGGGAGGTCACCGTGACGA.........................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................CAGACCGTTGAGTTCCCTCAGG...............................	22	1	1.00	1	0	0	0	0	0	1
............................................................................................................................................................................AACGCGAAAAGACTGAAAAGCT..........................................................................................	22	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................CACCGATGAGAACGATCT------CCTGCTCC....................................................	26	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................CTCCAGACCGTTGAGTTCCCTC..................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................ACGAACAAGGGAAAACGC...........................................................................................................	18	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................GAGACATCTGGCTACGAGG....................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................................AGGCATCCAAGTGGGAGGT....................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................GACATCTGGCTACGAGGC...................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................GTTCCCTCAGGGCTCCAAGTCGCT..................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................AGCTAAAGACCACCGATGAGAACG......................................................................	24	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................CT------CCTGCTCCAGACCGTTGAGTTCCC....................................	26	1	1.00	1	0	0	0	1	0	0
............................................................................................................................................................GTGACGAACAAGGGAAAACGCGAAC.......................................................................................................	25	1	1.00	1	0	0	0	0	0	1

droBip1

A-----------------------------------------------AACAGCTTCGGTGGCTTCGCCTCCAGTCAAGACACGGTCGTCGGACTCACTGCCCTCATCAAGTTCGCCGAGACATCTGGCTACGAGGCATCCAAGTGGGAGGTCACCGTGGCCAACAAGGGAAAACGCGAAAAGACTGAAAAGCTGAATACATCAGATGAGAACGATCT------CCTGCTCCAGACCGTTGAGTTCCCTCAGGGCACCAAGTCGCTGGAGTTTGAAGCTAAGGG	Size	Hit Count	Total Norm	Total
No Reads

dp5

A------------------------------------------------ATAGTTTTGGAGGGTTTGCCTCCAGCCAGGACACAGTTGTAGGTCTGCAAGCCCTGATCAAGTTCGCTGAGAAGTCGGGCTATGAAGCGGCCAAGTGGGAGGTGAGTGTCTCTAACAAGGGAAAGCGAGAGAAGACCGAGAAACTGAGCGCCACGGAGGAAAACGATCT------GGTGCTGCAGACTGTCGAGTTTCCACAGGGTACCCAGTCACTGGAGTTCGAGGCTAAGGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................AGAAGTCGGGCTATGAAGC...................................................................................................................................................	19	2	1.50	3	0	1	0	0	0	0	0	0	0	2
.......................................................................................................................GAAGTCGGGCTATGAAGC...................................................................................................................................................	18	2	1.50	3	0	0	0	0	0	0	0	0	0	3
.........................................................................................................................................GGCCAAGTGGGAGGTGAGTGTCT............................................................................................................................	23	2	1.00	2	0	1	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................AACTGAGCGCCACGGAGG............................................................................	18	2	1.00	2	0	2	0	0	0	0	0	0	0	0
......................................................................................TGTAGGTCTGCAAGCCCTGATCAAGT............................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................GATCT------GGTGCTGCAGACTGTC............................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................GTCTGCAAGCCCTGATCAAGTT...........................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................ACTGTCGAGTTTCCACAGGGTACC..........................	24	2	0.50	1	0	0	0	1	0	0	0	0	0	0
........................................................................................................GATCAAGTTCGCTGAGAAGTCGGGCT..........................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................GAGAAGTCGGGCTATGAAGC...................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	1
.........................................................................................................ATCAAGTTCGCTGAGAAGTCGGGCT..........................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................CTAACAAGGGAAAGCGAGA.........................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................ACTGAGCGCCACGGAGGAAAA........................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................ATGAAGCGGCCAAGTGGGAGGTG...................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................GAGCGCCACGGAGGAAAACGAT....................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................GACTGTCGAGTTTCCACAGGGT.............................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................GACACAGTTGTAGGTCTGCAAGCCCT....................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................GGCCAAGTGGGAGGTGAGTGT..............................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................GAGGGTTTGCCTCCAGCCAGGACACAGT......................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CCTGATCAAGTTCGCTGAGAAGT................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGACTGTCGAGTTTCCACA.................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CCTGATCAAGTTCGCTGAGAAGTCGGG............................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GAGAGAAGACCGAGAAACTGAG.......................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................GTAGGTCTGCAAGCCCTGATCAAGTTC..........................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................ACAGTTGTAGGTCTGCAAG........................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GAAGACCGAGAAACTGAGCGCCAC.................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................AGAAGTCGGGCTATGAAGCGG.................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................................................................AAACTGAGCGCCACGGAGGA...........................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................GGCCAAGTGGGAGGTGAGT................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................AGCCAGGACACAGTTGTAGGT...............................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0
....................................................................CTCCAGCCAGGACACAGTTGTAGGTCT.............................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................AGTTCGCTGAGAAGTCGGGCT..........................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ACGATCT------GGTGCTGCAGAC................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................ATCT------GGTGCTGCAGACTGTCG...........................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................AAACGATCT------GGTGCTGCAGA.................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GAAGACCGAGAAACTGAGCGC....................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................................................GAAGACCGAGAAACTGAGCGCCA..................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	1
.........................................................................................................ATCAAGTTCGCTGAGAAGTCGGGC...........................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AGACCGAGAAACTGAGCGCCACGGAGG............................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................GCCAAGTGGGAGGTGAGTGTCTCTA.........................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TGTCGAGTTTCCACAGGGTA............................	20	2	0.50	1	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................GGAAAACGATCT------GGTGCTGCAG..................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GTGCTGCAGACTGTCGAGTTTC.....................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................GTTTTGGAGGGTTTGCCTCCAGCC................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................GGGCTATGAAGCGGCCAAGTGGGAGGTG...................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ACGATCT------GGTGCTGCAGACTGTCGAGT........................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................ACACAGTTGTAGGTCTGCA..........................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................CCGAGAAACTGAGCGCCACGGAG.............................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CAAGTTCGCTGAGAAGTCGGGC...........................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................AGACTGTCGAGTTTCCACAGG...............................	21	2	0.50	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................TGTCGAGTTTCCACAGGGT.............................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................GGGTTTGCCTCCAGCCAGGA............................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................CTGCAGACTGTCGAGTTTCCA...................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................ACGGAGGAAAACGATCT------GGTGCTGCA...................................................	26	2	0.50	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................CACGGAGGAAAACGATCT------G...........................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................GAGAAGACCGAGAAACTGAGCGC....................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................GAAGCGGCCAAGTGGGAGGTGA..................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................TGCCTCCAGCCAGGACACAGTTGTA..................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................GGTTTGCCTCCAGCCAGGACAC.........................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................GTTTTGGAGGGTTTGCCTC.....................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

A------------------------------------------------ATAGTTTTGGAGGGTTTGCCTCCAGCCAGGACACAGTTGTAGGTCTGCAAGCCCTGATCAAGTTCGCTGAGAAGTCGGGCTATGAAGCGGCCAAGTGGGAGGTGAGTGTCTCTAACAAGGGAAAGCGAGAGAAGACCGAGAAACTGAGCGCCACGGAGGAAAACGATCT------GGTGCTGCAGACTGTCGAGTTTCCACAGGGTACCCAGTCGCTGGAGTTCGAGGCTAAGGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................GGCCAAGTGGGAGGTGAGTGTC.............................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.........................................................................................................................................GGCCAAGTGGGAGGTGAGTGT..............................................................................................................................	21	1	2.00	2	0	0	0	0	0	2
................................................................................................................................................................CTAACAAGGGAAAGCGAGA.........................................................................................................	19	2	1.50	3	0	1	0	0	0	2
.....................................................................................................................GAGAAGTCGGGCTATGAAGCGGC................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................AAGCGGCCAAGTGGGAGGT....................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................GTACCCAGTCGCTGGAGTTCG..........	21	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................TTCCACAGGGTACCCAGTCGCTGGA...............	25	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................CACAGGGTACCCAGTCGCTGGAGTTC...........	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................AGTCGGGCTATGAAGCGGCCAAGTG..........................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................GAGAAGTCGGGCTATGAAGCG..................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................GCGAGAGAAGACCGAGAAACTGAGC......................................................................................	25	2	0.50	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................GACTGTCGAGTTTCCACAGG...............................	20	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................................................................................................CT------GGTGCTGCAGACTGTC............................................	18	2	0.50	1	1	0	0	0	0	0
..........................................................................................................................................................................AAAGCGAGAGAAGACCGAGA..............................................................................................	20	2	0.50	1	0	1	0	0	0	0
..................................................................................CAGTTGTAGGTCTGCAAGCC......................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	1	0
.................................................................................................................................................GGGAGGTGAGTGTCTCTAACAAGG...................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
.................................................................................................................................................................................................................AAACGATCT------GGTGCTGCAGA.................................................	20	2	0.50	1	1	0	0	0	0	0
...............................................................................................................TTCGCTGAGAAGTCGGGC...........................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0
............................................................................................................AAGTTCGCTGAGAAGTCG..............................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0
.................................................................................................................................................................................................................AAACGATCT------GGTGCTGCAGT.................................................	20	2	0.50	1	1	0	0	0	0	0
......................................................................................TGTAGGTCTGCAAGCCCT....................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................................GTCTCTAACAAGGGAAAGCGAGA.........................................................................................................	23	2	0.50	1	0	0	0	0	0	1
.........................................................................................................................................................................................CGAGAAACTGAGCGCCACGGA..............................................................................	21	2	0.50	1	0	1	0	0	0	0
.............................................................GGTTTGCCTCCAGCCAGGA............................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0

droWil2

A------------------------------------------------ATAGCTATGGCGGTTTCGCCTCCACACAGGACACCGTGGTGGGCCTTCAGGCTCTTATTCAATTCGCCAAAAAGACAGGCTATGAGGCCGCCAAGTGGCAAGTGAATGTCTCCAATAAGGGATTGCGTGAGAAATCCGAGAAACTATCCATATCGGACGAGAATGACTT------ACTTCTGCAAACTATCGAGTTTCCCCAAGGCACCAAATCCCTTGAATTCCAAGCGAAAGG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................................................................................ATGACTT------ACTTCTGCAAACT...............................................	20	1	3.00	3	3	0	0	0	0
.............................................................................GGACACCGTGGTGGGCCTTCAGG........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
....................................................................CTCCACACAGGACACCGTGGTG..................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
..................................................................................................................................ATGAGGCCGCCAAGTGGCAAG.....................................................................................................................................	21	1	1.00	1	0	0	1	0	0
............................................................................AGGACACCGTGGTGGGCCTTCAGGC.......................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1
.....................................................................................................................AAAAAGACAGGCTATGAGG....................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
..........................................................................ACAGGACACCGTGGTGGG................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1
.................................................................................................................................TATGAGGCCGCCAAGTGGCAAGT....................................................................................................................................	23	1	1.00	1	0	0	1	0	0
........................................................................ACACAGGACACCGTGGTGGG................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.........................................................................................................................................CGCCAAGTGGCAAGTGAATGTCTC...........................................................................................................................	24	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................ATGTCTCCAATAAGGGATTGCGTGAGA.......................................................................................................	27	1	1.00	1	0	0	1	0	0
......................................................................................................................................................................AGGGATTGCGTGAGAAATC...................................................................................................	19	1	1.00	1	0	0	0	0	1
..................................................................................................................................................................................................ATCCATATCGGACGAGAATG......................................................................	20	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................T------ACTTCTGCAAACTATCGA..........................................	19	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................TTCCCCAAGGCACCAAATCCCTT.................	23	1	1.00	1	0	1	0	0	0
.....................................................................................................................................................................................................................GACTT------ACTTCTGCAAACTATCGA..........................................	23	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................TCTGCAAACTATCGAGTTTCCCC..................................	23	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................ATCCATATCGGACGAGAAT.......................................................................	19	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................GAGAAACTATCCATATCGGACGAGA.........................................................................	25	1	1.00	1	0	0	1	0	0
....................................................................................................................................................AAGTGAATGTCTCCAATAAG....................................................................................................................	20	1	1.00	1	0	0	0	0	1
..................................................................................................................................ATGAGGCCGCCAAGTGGCAAGT....................................................................................................................................	22	1	1.00	1	0	0	1	0	0
...................................................................................................................................................................ATAAGGGATTGCGTGAGA.......................................................................................................	18	1	1.00	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................TCCCCAAGGCACCAAATCCCTT.................	22	1	1.00	1	0	1	0	0	0
...........................................................................................................................................CCAAGTGGCAAGTGAATGTCT............................................................................................................................	21	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................ATCCATATCGGACGAGAATGACT...................................................................	23	1	1.00	1	0	0	1	0	0
.........................................................................................................................................CGCCAAGTGGCAAGTGAATGTC.............................................................................................................................	22	1	1.00	1	0	0	1	0	0
....................................................................................................................................................AAGTGAATGTCTCCAATAAGGG..................................................................................................................	22	1	1.00	1	0	0	1	0	0
.......................................................................................................TTATTCAATTCGCCAAAAAGACAGG............................................................................................................................................................	25	1	1.00	1	0	1	0	0	0

droVir3

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGACAACGATTT------GCTGCTGCAAACGGTCGAGTTCCCCCAGGGCACCAAATCGCTGTCCTACGAGGCCAAGGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................GATTT------GCTGCTGCAAACGGT.............................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5
.........................................................................................................................................................................................................................................AACGGTCGAGTTCCCCCAGGGCACCAAAT......................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................GGACAACGATTT------GCTGCTGCA...................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TGCTGCAAACGGTCGAGTTCCC....................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................ATTT------GCTGCTGCAAACGGT.............................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................ATTT------GCTGCTGCAAACGGTCGAGTT.......................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAACGATTT------GCTACTCCAAACCGTGGAGTTCCCTCAAGGCACCAAGTCGCTGTCGTACGAGTCGAAGGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................ATTT------GCTACTCCAAACCGTGG...........................................	21	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................AACCGTGGAGTTCCCTCAAGGCACCAAG.......................	28	2	0.50	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................AGTTCCCTCAAGGCACCAAGT......................	21	2	0.50	1	1	0	0	0	0	0

droGri2

G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACAATGATTT------GCTGCTGCAAACCGTCGAATTCCCGCAGGGCACCAAGTCGCTGTCGTATGAGGCCAAGGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.................................................................................................................................................................................................................................................AATTCCCGCAGGGCACCA.........................	18	1	1.00	1	1	0
......................................................................................................................................................................................................................................GCAAACCGTCGAATTCCCGCAGGGCA............................	26	1	1.00	1	0	1
.............................................................................................................................................................................................................................................GTCGAATTCCCGCAGGGCACC..........................	21	1	1.00	1	1	0
.........................................................................................................................................................................................................................................AACCGTCGAATTCCCGCAGG...............................	20	1	1.00	1	1	0
.............................................................................................................................................................................................................................................GTCGAATTCCCGCAGGGCAC...........................	20	1	1.00	1	1	0
................................................................................................................................................................................................................................................GAATTCCCGCAGGGCACCAAGTCGCT..................	26	1	1.00	1	1	0
..........................................................................................................................................................................................................................................ACCGTCGAATTCCCGCAGGGCA............................	22	1	1.00	1	1	0

dsi_10113

2l:19091913-19092062 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.3	-27.1	-27.0