ID:

dsi_10091

 Coordinate:

3l:20925547-20925696 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

intron [3l_20925746_20934106_+]; exon [3l_20925697_20925745_+]; five_prime_UTR [3l_20925697_20925745_+]; intron [3l_20897648_20925696_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------#################################################-
TTTTATTTTTGGACTGCATTCGAGGAGTTTTCGATTATTATTCGCCTCTCGAAATGTCAAAATGCTTTGCTCCGAATGGTTTGCATTTTGTGCATGGATTGAGACAATGTTACGGAAAAGGAAATCTCGTGAAAGTAATCTGCATATTTCTCTTTTGCATCGAGAGCAATTATTGATTATTGCTGTGTTTTGTATTGCAGATTCGCCGATTCGGTTGCAAAGGACACTTGAGGACGTCTTAACCAATAGG
**************************************************.......((((((((...(((......)))..))))))))((((.....(((((((...(((((((........)).)))))........((((...........)))).....((((((........)))))).)))))))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
...........................................................................................................................................................................................................................TAGGGCACTTGAGGACGTCGT.......... 21 3 1 2.00 2 0 0 0 2 0 0 0 0 0
................................................................................................................................................................................................................................CACTTGAGGACGTCTTAACCA..... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GATTCGGTTGCAAAGGAC......................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0
.........................................................................................................ACTGTTACGGACAAGGGAATCT........................................................................................................................... 22 3 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................AGCCATTGTTGATCATTGCTG................................................................. 21 3 2 1.00 2 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGTTGCAAAGGACACTTGAGGACGT............. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................AAAGGACACTTGAGGACGTCTTAACCAA.... 28 0 1 1.00 1 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................ATTCGGTTGCAAAGGACACT...................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAAGGACACTTGAGGACGTCT........... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGCAAAGGACACTTGAGGAC............... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................GACACTTGAGGACGTCTTAACC...... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAAGGACACTTGAGGACGT............. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................................AGGACACTTGAGGACGTCT........... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................TGAGACAATGTTACGGAAAAGAAAA.............................................................................................................................. 25 1 1 1.00 1 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................................................TTGTATTGCAGATTCGCCGATTCGGT................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
...........................................................................................................TGGTACGGACAAGGAAATC............................................................................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGTATTTTTTATTGCAGATTCGG............................................ 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................ATTCGGTTGCAAAGGACACTTGAGGAC............... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................TCGGTTGCAAAGGACACTTGAGGACGT............. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................ACTCTCGTGAAGGTACTCTGCA.......................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................AAGGACACTTGAGGACGTCTTAACC...... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................GGTACGGACAAGGGAATCT........................................................................................................................... 19 3 13 0.77 10 0 1 9 0 0 0 0 0 0
........................................................................................TAGGCATGGATTTAGACAATG............................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................CGATTCGCCGATTCGGTA.................................. 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0
...........................................................................................................TGGTACGGACAAGGGAATCT........................................................................................................................... 20 3 5 0.40 2 0 0 2 0 0 0 0 0 0
............................................................................................................GTTACGGACAAGGGAATC............................................................................................................................ 18 2 4 0.25 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GATTCGGTTGCAGGGGAC......................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................ATCTCGTGAAGGAACTCTGC........................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 0 1 0 0
.............................................................................................................GTACGGACAAGGAAATCT........................................................................................................................... 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0
.........TGGACTGCATGCGAG.................................................................................................................................................................................................................................. 15 1 7 0.14 1 0 0 0 1 0 0 0 0 0
...........................................................................................................TGGTACGGACAAGGGAATC............................................................................................................................ 19 3 15 0.13 2 0 0 1 0 0 0 1 0 0
.....................................................................................................................................................................GCCATTGTTGATCATTGCTG................................................................. 20 3 8 0.13 1 0 0 1 0 0 0 0 0 0
.......................................................................................................ACAAAGTTACGGAAAA................................................................................................................................... 16 1 20 0.10 2 0 0 0 0 0 0 0 0 2
...........................................................................................................................................................................ATTAATTATTGCTGTCTTT............................................................ 19 2 11 0.09 1 0 0 0 1 0 0 0 0 0
.........................................................................................GTGAATGGATTGAGA.................................................................................................................................................. 15 1 14 0.07 1 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................CTTATTGATTATTGCTGC................................................................ 18 2 18 0.06 1 0 0 1 0 0 0 0 0 0
...........GACCGCATTGGAGGAGCTT............................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0
............................................................................................................GGTACGGACAAGGCAATC............................................................................................................................ 18 3 20 0.05 1 0 0 1 0 0 0 0 0 0
.............................................................................................ATGGATGTAGACAATGT............................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

AAAATAAAAACCTGACGTAAGCTCCTCAAAAGCTAATAATAAGCGGAGAGCTTTACAGTTTTACGAAACGAGGCTTACCAAACGTAAAACACGTACCTAACTCTGTTACAATGCCTTTTCCTTTAGAGCACTTTCATTAGACGTATAAAGAGAAAACGTAGCTCTCGTTAATAACTAATAACGACACAAAACATAACGTCTAAGCGGCTAAGCCAACGTTTCCTGTGAACTCCTGCAGAATTGGTTATCC
**************************************************.......((((((((...(((......)))..))))))))((((.....(((((((...(((((((........)).)))))........((((...........)))).....((((((........)))))).)))))))...)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.....................................................................................................................................................................................................................................CCGCTGCAGAATTGGTTA... 18 2 4 7.50 30 18 12 0 0 0 0
........................................................................................................................................................................................................................................CTGCAGGATTGGCTATC. 17 2 5 0.60 3 0 0 0 2 1 0
.....................................AATAAGGGGAGATCTTTA................................................................................................................................................................................................... 18 2 5 0.60 3 0 0 3 0 0 0
.......................................TAAGGGGAGATCTTTACA................................................................................................................................................................................................. 18 2 7 0.29 2 0 0 2 0 0 0
.....................................................................................................................................................................................................................................CAGCTGCAGAATTGGTTA... 18 2 5 0.20 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................CTGCAGGATTGGCTAT.. 16 2 18 0.17 3 0 0 0 0 3 0
...................................ATAGTAAGGGGAGATCTTTA................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0
........................................................AGTGTTACGAAACGA................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 0 1
............................................GGAGAGATTTAAAGTTTT............................................................................................................................................................................................ 18 2 18 0.06 1 0 0 0 1 0 0
......................................TTAAGGGGAGATCTTTACA................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:20925497-20925746 + dsi_10091 TTTTATT---TTTGGACT--------GCATT------------------------------C-GA-GGAGTTTT----CGATTATTATTCGC----CTCTCGAAATGTCAAAATGCTTT--GC-------TCCG----------------------AA------TGG---TTTGCATTTT--GTGCATGG--ATTGAG-ACAATGTT-ACGGA----------------------AAAGG-AAATCTCGTGAAAGTAATCTGCATATTTCTC---TTTT-GCATC-GAGA----GCAATTATTGATTAT-TGCTGTGT-----TT-TGTATTGCAGATTCG-CCGAT--TCGGTTG---------CAAAGGACACTTGAGGACGTCTTAACCAATAGG
droSec2 scaffold_11:1328295-1328535 + TT-----------GGACT--------GCATT------------------------------C-GA-GGAGTTTT----CGATTATTATTCGC----CTCTCGAAATGTCAAAATGTTT---GC-------TCCG----------------------AA------TGG---TTTGCATTTC--GTGCATCG--ATTGAG-ACAATGTT-ACGGA----------------------AAAGG-AAATCTCGTGAAAGTAATCTGCATATTTTCC---TTTT-GCATC-GAGA----GCAATTATTGATTGT-GGGTGTGT-----TT-TGTATTGCAGATTCG-CCGAT--TCGGTTG---------CAAAGGACACTTGAGGACGTCTTAACCAATAGG
dm3 chr3L:21404430-21404679 + T-----------------------------------GACGCCGAGTGGC-----T-CGAATC-GA-GGAGTTTT----GGATTATTATTCGC----CTCTCGAAATGTCAAAATGCTTT--GC-------TCCG----------------------AA------TGG---TTTGCATTTT--GTGCGTCG--ATTGAG-ACAATGTT-ACGGC----------------------AAAGG-AAATCTCGTGAAAGTAATCTGCATATTTCCT---TTTT-GCATC-GAGA----GCATTTATTGATTAT-TGCTGTGT-----TT-TGTATTGCAGATTCG-CCGAT--TCGGTTG---------CAAAGGACTCTTGAGGACGTCTTAACCAATAGG
droEre2 scaffold_4784:21062000-21062267 + TT--ATT---TTTGGACT--------GCATTTCGCTGACGCCGAGTGGC-----T-CGAATC-GA----GTTTT----GGATTATTATTCGC----CCCTCGATATGTCAAAATGCTTT--GC-------TCCG----------------------AA------TGG---TTTGCATTTT--GTGCCTCA--CTTGAG-ACAATATT-ATGGT----------------------AAAGG-AAATCTTGTGAATTCCATCTGCATAATTCC----TTTT-GTATT-GAGC----GCAATTATTGATTAT-TGCTGTAT-----TT-TATATTGCAGACTCG-CCGAT--TCTACTG---------TGAAGGACTCTTGAAGACGTATTTTTCAATAGG
droYak3 v2_chr3L_random_270:43982-44233 + TT-----------GGACT--------GAATTTCGCTGACGCCAAGTGGC-----T-CGAGTA-GA-GGAGTTTT----GGAT-TTTATTCGC----CTCGCGATATGTCAAAATGCTTT--GC-------TTCG----------------------AA------TGG---TTTGCATTTT--GCGCATCG--CTTGAG-ACAATACT-ATGGA----------------------AAAGG-A-ATCTCGTGAATTAAATCTACATATTTAT----TCTC-GCATT-GGGA----GCAATTATTGATTAT-TGCTGTAT-----TT-TATATTTCAGATTCG-CCGAT--TCTGTTG---------T-----------GAAGACGTCTTTTCCATCAGG
droEug1 scf7180000409711:4621705-4621952 - TT--------TTAGTAAC--------GCTTTTAGCTGAT----------------------G-GA-GAAGT-TT----GCATTTTT------------------ATGTCAAAATGCTTTT-GCCAGACATTCGC----------------------AA------TGG---TTTACATTTT--CTGCCTCG--ATTGAG-ACAATATTTATGGC----------------------AGAGG-AAGTCTCTAGAACTTAATTTGCATATTTTTC---TTTTGACTTG-GAGA----GTTTTTATTGATTAT-CTTTGGGT-----TTTTGTATTGCAGATTCG-CTAAT--TTGGATT---------TGAAGAGCTGCTGAAGACGCTT-CTCCAAAAGG
droBia1 scf7180000302193:4637600-4637843 - TC------------GACC--------GCATTTCGCTGACGCCGAGTGGC-----T-GGAATC-GA-GGGGT-TC----GCATTTTTCCACGC----CCCTCGATATGTCAAAATGCTTTT-----------------------------------------------------------T---GGCCTCG--ATTGCG-ACTGTATTTATGGC----------------------AGCGG-ATCTGTCTAGAACTTAATCTGCATATTTTCC----TTT-GCCTC-TGGA----GTTTTTATTGATTAT-GGCTGTGT-----CTTTGTATTGCAGATTCG-CCAAT--TCTGAGC---------TGAAGGACCCTCGAAGAAGCCT-AACCAAAAGG
droTak1 scf7180000415809:1044469-1044745 - TT-----------CGACC--------GCATTTCGCTGACGCCGAGTGCC-----T-CGAATCGGA-GAAGT-CT----GCATTTTTATTCGC----CTCTCAATATGTCAAAATGCTTTT-GCCCCACCCTCGG----------------------AA------TTGTTGTTTGCATTTT--GTGCCTCG--ATTGAG-ACAATATTTATGGC----------------------AAAGG-AAACCTCTAGAATTTAATCTGCATATTTTC-----TTA-GCTTC-AAGA----GTTTTTATTGATTATTTTCTGTAT-----TTTTGTATTGCAGATTCG-CCAAT--TCTGTTC---------TGGAGGACTCTCGAAGACGCCT-ACCAAATAGG
droEle1 scf7180000491193:1945344-1945619 - T----------CTGGACC--------GCATTTCGCTGACTCGGAGTGCC-----T-TGAATC-GA-GTAGT-TT----ACATTTTTATTCGC----CCCTCGATATGTCAAAATGCTTTT-ACCCCACACTCGA----------------------GA------TGG---TTTGCATTTT--GTGCCGCG--ACTGAG-ACAATATTAATGCC----------------------AAAGA-AAATGTCTAGAGTACAATTTGCATATTTTTC-TCTTTT-GTTTT-GAGA----GTTTTTATTGATTTT-TGCTGTAT-----TTTTGTATTGCAGATTCG-CCAAT--TCTGATT---------TGAAA-AGTCTCAAAGACGTCT-ACCCAATAGG
droRho1 scf7180000780098:119343-119609 - TT--ATT---TCTGGACC--------GCATTTCGCTGTCTCCGACTGGA---------------ATGAATT-TT----GCATTTTTATTTTC----CTCTCGATATGTCAAAATGCTTTT-GCCCCACACTCGA----------------------AA--------------------TT--GTGCCTCG--ATTGAG-ACCGAATTTATGGC----------------------AAAGA-AAATGTCTAGAATAGAATTTGCATATTTTTC---TTTA-GT-T--GTTTTCCAGTTTTTATTGATTTT-TTATGTTT-TTTTTT-TGTGTTGCAGGTTTG-CCAAT--TCTGATC---------TGAAGGACTCTTAAAGACATCT-ACCCAATAGG
droFic1 scf7180000453929:537602-537873 + TT-----------GGACC--------GCATTTCGCTGACGCCGAGTGGA-----T-TGTATC-GA-GAAGA-TT----GCATTTTTATTCAC----CCCTCAATATGTCAAAAAGCTTTT-GCCCCACACTTCA----------------------AA------TGG---CTTTCATTTT--TCGCTCCG--GCTGAG-ACAATATTTATGGC----------------------AACGG-AAATTTCTAGAGTGTAATCTGCATATTTTTC----TTT-GTGCC-AAGA----GTTTTTATTAACTGT-TTTTGTAT-----TT-TTTTTTACAGTTTTG-CAAAT--TCTTATT---------TGAAGGACTCTCAAAGACGTCT-ATCTAACAGG
droKik1 scf7180000302486:1297974-1298249 - TT-----------GGACCGAGGCACAGCATTTTGCTGACGCCAAAT---------------G-GA-GAACT-TT----GCATTTTTATTCGCGCGGTTCTCAAAATGTCAAAATGCTTTTTGCTTTGCCCTCG-----------------------GA------GAG---TTG--GTTTT--GTGCATCG--ATTGAG-TCAATATTTATGGC----------------------AAAAGAAAATTCTCGGAATATCATTTGCATGATTTTC---CTTT-GC-TG-GAAA----CTTTTTACTGATTTC-TGATGTAT-----TTCTTTATTGCAGATTTG-TGAAT-TTCTGATC---------TGAAGTGGACCCAAAGACGCCT-AACCAATAGG
droAna3 scaffold_13337:10220553-10220842 + TT--ATT---TTTGGACT--------GCATTTTGCTGATGCAGAGTGGCGTCGTT-TGAACG-GA-TAAGT-CT----GCATTTTTATTCGC----TCCTCGAAATGTCAAAATGGTTCT-GGT-------CCGGGAATCGCATTTTGGCACTCGGAC------TGATTGGTTGCACTTTGTGTGCATCGCCATAGGG-ACGCTGTTTATT--------------------TGTACAATG-CATTTTCCAGAATACAATCAGTATGTTTTAA---TTTT---------------------------------CCTTATTTTTCTT-TCCATTACAGATTTAAACCATTCTCTGACC---------CAAAGTGCACTCAAAGGCGTCT-ACAGTAAAGG
droBip1 scf7180000396569:1142780-1142908 - TT--ATT---TTTGGACT--------ACATTTTGCTGATGCCGAGTGGCGTCGTTTGGAACG-GA-GGAGT-CT----GAATTTTTATTCGC----TCCTCGAACTGTCAAAATGGTTGT-GGC-------CCGGG--------------------AA------TCG---CTT---TTTG--GCACTTGG--ACTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 XR_group6:12745881-12746170 + CT--ATTGAATCTGGACC--------ACATTTCGCTGACGCCGCCCAGTGCTACT-----------------TTGCTGCCATTTTTATTCGC----CTTTCAATATGTCAAAATGCTTTT--T-------TCCGGGCATCGA--------------AATTGAAATGGC--TTTGCCTTTT--GTGCATCA--ATTAAGTACAATGTTGATGGCCAGACCATAAAAATGCTTTGAAA----------------------------GATGTGCTCTC-TC---TATTGCAAA----TATTTCATTGGCTTT--TCTCCGT-----TT-TTTATTGCAGTTCTT-TCAAC--TCGAATCTGTGCTTGTTAACGGACTCTCGAAGGCATCT-TTCAAATAGG
droPer2 scaffold_33:767908-768197 + CT--ATTGAATCTGGACC--------ACATTTCGCTGACGCCGCCCAGTGCTACT-----------------TTGCTGCCATTTTTATTCGC----CTTTCAATATGTCAAAATGCTTTT--T-------TCCGGGCATCGA--------------AATTGAAATGGC--TTTGCCTTTT--GTGCATCA--ATTAAGTACAATGTTGATGGCCAGACCATAAAAATGCTTTGAAA----------------------------AATGTGCTCTC-TC---TATTGCAAA----TATTTCATTGGCTTT--TCTCCGT-----TT-TTTATTGCAGTTCTT-TCAAC--TCGAATCTCTGCTTGTTAACGGACTCTCGAAGGCATCT-CTCAAATAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTTATT---TTTGGACT--------GCATT------------------------------C-GA-GGAGTTTT----CGATTATTATTCGC----CTCTCGAAATGTCAAAATGCTTT--GC-------TCCG----------------------AA------TGG---TTTGCATTTT--GTGCATGG--ATTGAG-ACAATGTT-ACGGA----------------------AAAGG-AAATCTCGTGAAAGTAATCTGCATATTTCTC---TTTT-GCATC-GAGA----GCAATTATTGATTAT-TGCTGTGT-----TT-TGTATTGCAGATTCG-CCGAT--TCGGTTG---------CAAAGGACACTTGAGGACGTCTTAACCAATAGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................CACTTGAGGACGTCTTAACCA.....2112.00200200000000000000
........................................................................................................................................................................................................................................................................................................................................................GAT--TCGGTTG---------CAAAGGAC.........................1812.00220000000000000000
...............................................................................................................................................................................................................................................................................................................................................................GGTTG---------CAAAGGACACTTGAGGACGT.............2511.00100000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................AAAGGACACTTGAGGACGTCTTAACCAA....2811.00100000001000000000
.........................................................................................................................................................................................................................................................................................................................................................AT--TCGGTTG---------CAAAGGACACT......................2011.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AAAGGACACTTGAGGACGTCT...........2111.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................TG---------CAAAGGACACTTGAGGAC...............2011.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................GACACTTGAGGACGTCTTAACC......2211.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AAAGGACACTTGAGGACGT.............1911.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................AGGACACTTGAGGACGTCT...........1911.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................T-TGTATTGCAGATTCG-CCGAT--TCGGT............................................2611.00100000000000010000
.........................................................................................................................................................................................................................................................................................................................................................AT--TCGGTTG---------CAAAGGACACTTGAGGAC...............2711.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TCGGTTG---------CAAAGGACACTTGAGGACGT.............2711.00100000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................AAGGACACTTGAGGACGTCTTAACC......2511.00110000000000000000
droSec2
TT-----------GGACT--------GCATT------------------------------C-GA-GGAGTTTT----CGATTATTATTCGC----CTCTCGAAATGTCAAAATGTTT---GC-------TCCG----------------------AA------TGG---TTTGCATTTC--GTGCATCG--ATTGAG-ACAATGTT-ACGGA----------------------AAAGG-AAATCTCGTGAAAGTAATCTGCATATTTTCC---TTTT-GCATC-GAGA----GCAATTATTGATTGT-GGGTGTGT-----TT-TGTATTGCAGATTCG-CCGAT--TCGGTTG---------CAAAGGACACTTGAGGACGTCTTAACCAATAGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................GGTTG---------CAAAGGACACTTGAGGACGT.............2511.0010010
dm3
T-----------------------------------GACGCCGAGTGGC-----T-CGAATC-GA-GGAGTTTT----GGATTATTATTCGC----CTCTCGAAATGTCAAAATGCTTT--GC-------TCCG----------------------AA------TGG---TTTGCATTTT--GTGCGTCG--ATTGAG-ACAATGTT-ACGGC----------------------AAAGG-AAATCTCGTGAAAGTAATCTGCATATTTCCT---TTTT-GCATC-GAGA----GCATTTATTGATTAT-TGCTGTGT-----TT-TGTATTGCAGATTCG-CCGAT--TCGGTTG---------CAAAGGACTCTTGAGGACGTCTTAACCAATAGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................TG---------CAAAGGACTCTTGAGGACGT.............2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................T-----TT-TGTATTGCAGATTCG-CCGAT--.................................................2313.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................TG---------CAAAGGACTCTTGAGGACGTCTT..........2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000
....................................................................................................................................CG----------------------AA------TGG---TTTGCATTTT--GTGCG...................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................TTTT--GTGCGTCG--ATTGAG-ACAATGT................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AAGG-AAATCTCGTGAAAGT..............................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................CGAT--TCGGTTG---------CAAAGGACTCTTGAGG.................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TGAG-ACAATGTT-ACGGC----------------------AAAGG-AAA..........................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................TGCGTCG--ATTGAG-ACAATGTT-ACGGC----------------------...................................................................................................................................................................2612.0020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................TCGGTTG---------CAAAGGACTCTTGAGGACGTC............2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................TATTGCAGATTCG-CCGAT--TCGGT............................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CTTGAGGACGTCTTAACCA.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................AAGGACTCTTGAGGACGT.............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................TGCATTTT--GTGCGTCG--ATTGAG-ACAATG.................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................................................................................................................................................................................................................................................................................................G---------CAAAGGACTCTTGAGGACGT.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................TGAG-ACAATGTT-ACGGC----------------------AAAGG-AAAA.........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................TGTCAAAATGCTTT--GC-------TCCG----------------------AA------TGG---TT..................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................T---TTTT-GCATC-GAGA----GCATTTATTGAT............................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................TTGATTAT-TGCTGTGT-----TT-TG......................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................TTG---------CAAAGGACTCTTGAGGACGTC............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................................................................................................................................................CGAT--TCGGTTG---------CAAAGGACTCTTG....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................C-------TCCG----------------------AA------TGG---TTTGCATTTT--GT......................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AAAGGACTCTTGAGGACG..............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................TGCGTCG--ATTGAG-ACAATGTT-ACGGC----------------------A..................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TGAG-ACAATGTT-ACGGC----------------------AAAGG-AAAT.........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................AATCTCGTGAAAGTAATCTGC.......................................................................................................................................2111.0010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................AAAGGACTCTTGAGGACGTC............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTCG-CCGAT--TCGGTTG---------CAAAGGACTCTT.....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................................................................................................................................................................................................................................................................................................................TAT-TGCTGTGT-----TT-TGTATTGCAG..............................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
....................................................................................................................................................................................................................................................TCTCGTGAAAGTAATCTGCATATT..................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................TC-GA-GGAGTTTT----GGATTATTATTCGC----C.............................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................TTCG-CCGAT--TCGGTTG---------CAAAGGACTC.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................TCGGTTG---------CAAAGGACTCTTGAGGACGT.............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................TTCCT---TTTT-GCATC-GAGA----GCATTTA.................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................TTGCAGATTCG-CCGAT--TCGGTTG---------CAAA.............................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................TTG---------CAAAGGACTCTTGAGGACGTCTT..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................CG-CCGAT--TCGGTTG---------CAAAGGACT........................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TTATTATTCGC----CTCTCGAAAT....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TGT-----TT-TGTATTGCAGATTCG-CCGAT--.................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................GATTCG-CCGAT--TCGGTTG---------CAAAGGAC.........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................TGGC-----T-CGAATC-GA-GGAGTTTT----GGAT............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................TTGATTAT-TGCTGTGT-----TT-TGTATTGCAGA.............................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TTTT----GGATTATTATTCGC----CTCTCGA.......................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................TCG--ATTGAG-ACAATGTT-ACGGC----------------------AAAGG-.............................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................CAAAGGACTCTTGAGGACGTC............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................................................TTTGCATTTT--GTGCGTCG--ATTGAG-ACAA...................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................ATGCTTT--GC-------TCCG----------------------AA------TGG---T...................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TTCG-CCGAT--TCGGTTG---------CAAAGGACTCT......................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................ATTTT--GTGCGTCG--ATTGAG-AC.....................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................T-----TT-TGTATTGCAGATTCG-CCGAT--TCGGT............................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................CCG----------------------AA------TGG---TTTGCATTTT--GTGCGTC.................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................TTGAG-ACAATGTT-ACGGC----------------------AAAGG-AAA..........................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TT--ATT---TTTGGACT--------GCATTTCGCTGACGCCGAGTGGC-----T-CGAATC-GA----GTTTT----GGATTATTATTCGC----CCCTCGATATGTCAAAATGCTTT--GC-------TCCG----------------------AA------TGG---TTTGCATTTT--GTGCCTCA--CTTGAG-ACAATATT-ATGGT----------------------AAAGG-AAATCTTGTGAATTCCATCTGCATAATTCC----TTTT-GTATT-GAGC----GCAATTATTGATTAT-TGCTGTAT-----TT-TATATTGCAGACTCG-CCGAT--TCTACTG---------TGAAGGACTCTTGAAGACGTATTTTTCAATAGGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................CTACTG---------TGAAGGACTCTTGAA..................2111.0010000010
..............................................................................................................................................................................................................................................................................................................................................................CTACTG---------TGAAGGACTCTTGA...................2011.0010000010
droYak3
TT-----------GGACT--------GAATTTCGCTGACGCCAAGTGGC-----T-CGAGTA-GA-GGAGTTTT----GGAT-TTTATTCGC----CTCGCGATATGTCAAAATGCTTT--GC-------TTCG----------------------AA------TGG---TTTGCATTTT--GCGCATCG--CTTGAG-ACAATACT-ATGGA----------------------AAAGG-A-ATCTCGTGAATTAAATCTACATATTTAT----TCTC-GCATT-GGGA----GCAATTATTGATTAT-TGCTGTAT-----TT-TATATTTCAGATTCG-CCGAT--TCTGTTG---------T-----------GAAGACGTCTTTTCCATCAGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................TCG-CCGAT--TCTGTTG---------T-----------GAAGACG..............2320.50110000000000
...................................................................................................................................................................................................................................................................................................................................................CG-CCGAT--TCTGTTG---------T-----------GAAGAC...............2120.50110000000000
...................................................................................................................................................................................................................................................................................................................................................CG-CCGAT--TCTGTTG---------T-----------GAAG.................1920.50101000000000
droEug1
TT--------TTAGTAAC--------GCTTTTAGCTGAT----------------------G-GA-GAAGT-TT----GCATTTTT------------------ATGTCAAAATGCTTTT-GCCAGACATTCGC----------------------AA------TGG---TTTACATTTT--CTGCCTCG--ATTGAG-ACAATATTTATGGC----------------------AGAGG-AAGTCTCTAGAACTTAATTTGCATATTTTTC---TTTTGACTTG-GAGA----GTTTTTATTGATTAT-CTTTGGGT-----TTTTGTATTGCAGATTCG-CTAAT--TTGGATT---------TGAAGAGCTGCTGAAGACGCTT-CTCCAAAAGGSizeHit CountTotal NormTotal
No Reads
droBia1
TC------------GACC--------GCATTTCGCTGACGCCGAGTGGC-----T-GGAATC-GA-GGGGT-TC----GCATTTTTCCACGC----CCCTCGATATGTCAAAATGCTTTT-----------------------------------------------------------T---GGCCTCG--ATTGCG-ACTGTATTTATGGC----------------------AGCGG-ATCTGTCTAGAACTTAATCTGCATATTTTCC----TTT-GCCTC-TGGA----GTTTTTATTGATTAT-GGCTGTGT-----CTTTGTATTGCAGATTCG-CCAAT--TCTGAGC---------TGAAGGACCCTCGAAGAAGCCT-AACCAAAAGGSizeHit CountTotal NormTotal
No Reads
droTak1
TT-----------CGACC--------GCATTTCGCTGACGCCGAGTGCC-----T-CGAATCGGA-GAAGT-CT----GCATTTTTATTCGC----CTCTCAATATGTCAAAATGCTTTT-GCCCCACCCTCGG----------------------AA------TTGTTGTTTGCATTTT--GTGCCTCG--ATTGAG-ACAATATTTATGGC----------------------AAAGG-AAACCTCTAGAATTTAATCTGCATATTTTC-----TTA-GCTTC-AAGA----GTTTTTATTGATTATTTTCTGTAT-----TTTTGTATTGCAGATTCG-CCAAT--TCTGTTC---------TGGAGGACTCTCGAAGACGCCT-ACCAAATAGGSizeHit CountTotal NormTotal
No Reads
droEle1
T----------CTGGACC--------GCATTTCGCTGACTCGGAGTGCC-----T-TGAATC-GA-GTAGT-TT----ACATTTTTATTCGC----CCCTCGATATGTCAAAATGCTTTT-ACCCCACACTCGA----------------------GA------TGG---TTTGCATTTT--GTGCCGCG--ACTGAG-ACAATATTAATGCC----------------------AAAGA-AAATGTCTAGAGTACAATTTGCATATTTTTC-TCTTTT-GTTTT-GAGA----GTTTTTATTGATTTT-TGCTGTAT-----TTTTGTATTGCAGATTCG-CCAAT--TCTGATT---------TGAAA-AGTCTCAAAGACGTCT-ACCCAATAGGSizeHit CountTotal NormTotal
No Reads
droRho1
TT--ATT---TCTGGACC--------GCATTTCGCTGTCTCCGACTGGA---------------ATGAATT-TT----GCATTTTTATTTTC----CTCTCGATATGTCAAAATGCTTTT-GCCCCACACTCGA----------------------AA--------------------TT--GTGCCTCG--ATTGAG-ACCGAATTTATGGC----------------------AAAGA-AAATGTCTAGAATAGAATTTGCATATTTTTC---TTTA-GT-T--GTTTTCCAGTTTTTATTGATTTT-TTATGTTT-TTTTTT-TGTGTTGCAGGTTTG-CCAAT--TCTGATC---------TGAAGGACTCTTAAAGACATCT-ACCCAATAGGSizeHit CountTotal NormTotal
No Reads
droFic1
TT-----------GGACC--------GCATTTCGCTGACGCCGAGTGGA-----T-TGTATC-GA-GAAGA-TT----GCATTTTTATTCAC----CCCTCAATATGTCAAAAAGCTTTT-GCCCCACACTTCA----------------------AA------TGG---CTTTCATTTT--TCGCTCCG--GCTGAG-ACAATATTTATGGC----------------------AACGG-AAATTTCTAGAGTGTAATCTGCATATTTTTC----TTT-GTGCC-AAGA----GTTTTTATTAACTGT-TTTTGTAT-----TT-TTTTTTACAGTTTTG-CAAAT--TCTTATT---------TGAAGGACTCTCAAAGACGTCT-ATCTAACAGGSizeHit CountTotal NormTotal
No Reads
droKik1
TT-----------GGACCGAGGCACAGCATTTTGCTGACGCCAAAT---------------G-GA-GAACT-TT----GCATTTTTATTCGCGCGGTTCTCAAAATGTCAAAATGCTTTTTGCTTTGCCCTCG-----------------------GA------GAG---TTG--GTTTT--GTGCATCG--ATTGAG-TCAATATTTATGGC----------------------AAAAGAAAATTCTCGGAATATCATTTGCATGATTTTC---CTTT-GC-TG-GAAA----CTTTTTACTGATTTC-TGATGTAT-----TTCTTTATTGCAGATTTG-TGAAT-TTCTGATC---------TGAAGTGGACCCAAAGACGCCT-AACCAATAGGSizeHit CountTotal NormTotal
No Reads
droAna3
TT--ATT---TTTGGACT--------GCATTTTGCTGATGCAGAGTGGCGTCGTT-TGAACG-GA-TAAGT-CT----GCATTTTTATTCGC----TCCTCGAAATGTCAAAATGGTTCT-GGT-------CCGGGAATCGCATTTTGGCACTCGGAC------TGATTGGTTGCACTTTGTGTGCATCGCCATAGGG-ACGCTGTTTATT--------------------TGTACAATG-CATTTTCCAGAATACAATCAGTATGTTTTAA---TTTT---------------------------------CCTTATTTTTCTT-TCCATTACAGATTTAAACCATTCTCTGACC---------CAAAGTGCACTCAAAGGCGTCT-ACAGTAAAGGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................GCACTCAAAGGCGTCT-ACAG......2011.001010000
droBip1
TT--ATT---TTTGGACT--------ACATTTTGCTGATGCCGAGTGGCGTCGTTTGGAACG-GA-GGAGT-CT----GAATTTTTATTCGC----TCCTCGAACTGTCAAAATGGTTGT-GGC-------CCGGG--------------------AA------TCG---CTT---TTTG--GCACTTGG--ACTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CT--ATTGAATCTGGACC--------ACATTTCGCTGACGCCGCCCAGTGCTACT-----------------TTGCTGCCATTTTTATTCGC----CTTTCAATATGTCAAAATGCTTTT--T-------TCCGGGCATCGA--------------AATTGAAATGGC--TTTGCCTTTT--GTGCATCA--ATTAAGTACAATGTTGATGGCCAGACCATAAAAATGCTTTGAAA----------------------------GATGTGCTCTC-TC---TATTGCAAA----TATTTCATTGGCTTT--TCTCCGT-----TT-TTTATTGCAGTTCTT-TCAAC--TCGAATCTGTGCTTGTTAACGGACTCTCGAAGGCATCT-TTCAAATAGGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
CT--ATTGAATCTGGACC--------ACATTTCGCTGACGCCGCCCAGTGCTACT-----------------TTGCTGCCATTTTTATTCGC----CTTTCAATATGTCAAAATGCTTTT--T-------TCCGGGCATCGA--------------AATTGAAATGGC--TTTGCCTTTT--GTGCATCA--ATTAAGTACAATGTTGATGGCCAGACCATAAAAATGCTTTGAAA----------------------------AATGTGCTCTC-TC---TATTGCAAA----TATTTCATTGGCTTT--TCTCCGT-----TT-TTTATTGCAGTTCTT-TCAAC--TCGAATCTCTGCTTGTTAACGGACTCTCGAAGGCATCT-CTCAAATAGGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................GTTAACGGACTCTCGAAGGC...............2011.001100000
..................................................................................................................................................................................................................................................................................................................................................CTT-TCAAC--TCGAATCTCTGCTT...................................2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................GTTAACGGACTCTCGAAGGCATCT-CC........2611.001100000

Generated: 05/18/2015 at 10:26 AM