ID:

dsi_10074

 Coordinate:

3r:17953741-17954093 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.6 -32.5 -32.5

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+

Sense Strand Reads

CTCCAGCGACAACAATAACTGCAGCAGCAACACCGGCGAACCAGCAACGAGTGAAACTGCAACGGCAACTGCAACAATCATGACTGCAACATCAACGAGAACGATGAACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCATTTGCATAGTTGGCATGCTGATTAATGTGACTTTTGATTTTGATTTCGTTTCGATTCGATTTTGCCGACTTTGATTTTTTGCCTGCGCTTGAAAAAGTTTTGTATGTAGAAGATGAGAACCTTTCGACACCAAACGCTTGTCCACAACGTACATACATACGTACATCCACACCGCAACACCCGGACCAAATGCATACCACCTAAGTTTCTGACACTCACACACAGAACAGACACCGAACGCTTCCAGCACTCGGAAAATTGTTTAGGACTCCACAGAGAGATTGGGCAACGGCAATGGAAA
*********************************************************************************************..(((((.(((.......(((((((...............(((((((((..((...)).)))))))))...)).)))))(((((.((........)).))))).))))))))..(((.......))).(((.(((((((((.(((((((....))))...))).))))))))).)))....*********************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 O002
Head
 O001
Testis
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
..............................................................................................................................................................................................................................................................TATGTAGAAGATGAGAACCT................................................................................................................................................................................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
.............................................................................................AACGAGAACGATGAACTGC..................................................................................................................................................................................................................................................................................................................................................... 19 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTCCACAGAGAGATT.................. 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTCCACAGAGAGAT................... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGAGATTGGGCAACGG......... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AAGTTTTGTATGTAGAAGATG.......................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TTTTGTATGTAGAAGATGAGA....................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................AGAAGATGAGAACCTTTCG............................................................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATTGTTTAGGACTAAA............................ 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TGTATGTAGAAGATGAGAACC.................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TATGTAGAAGATGAGAAAA.................................................................................................................................................................................... 19 2 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TGTATGTAGAAGATGAGAAA..................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAGAGATTGGGCAACG.......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGATTGGGCAACGGCATTTT... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................TTGTATGTAGAAGATGAGAAA..................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TGTATGTAGAAGATGAGAA...................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGATTGGGCAACGGCAA...... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TTTGTATGTAGAAGATGAGA....................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................................CAGAACAGACACCGAACGCTA.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ATGTAGAAGATGAGAACCTTT................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................GTTTTGTATGTAGAAGATGAG........................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................AAATGCATACCACCTAAGTTT............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................TTGTATGTAGAAGATGAGAACC.................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................TATGTAGAAGATGAGAACCTT.................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................TGACTGCAACATCAACGAGAAC............................................................................................................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGAAAATTGTTTAGGAC................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ATGTAGAAGATGAGAACCTT.................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TTTTGTATGTAGAAGATGAGAA...................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................CACAGAACAGACACCGAACGCT........................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................TTGTATGTAGAAGATGAGAAC..................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CGTACATCCACACCGCAACACC........................................................................................................................ 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................................AGCACTCGGAAAATTGTTTA.................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCACAGAGAGATTGGAC.............. 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................TTTTGTATGTAGAAGATGAG........................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAGAGATTGGGCAACGG......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................CGAACCAAATGCATACCACCT................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTGGGCAACGGCAATGGA.. 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGATTGGGCAACGGCAAA..... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................TTTGTATGTAGAAGATGAGAA...................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................ATGTAGAAGATGAGAACCTA.................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGAGATTGGGCAACGGCAT...... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................CCAGCAACGCGTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................. 16 1 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................GACACCGATCGCTTCCA....................................................... 17 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
.................................................AGTGAAACTGCAATGGCTC................................................................................................................................................................................................................................................................................................................................................................................................. 19 3 20 0.20 4 0 1 0 0 1 0 0 0 0 2 0
...............................................................................................CGAGGACGGTGACCTGCAGC.................................................................................................................................................................................................................................................................................................................................................. 20 3 18 0.06 1 0 0 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGGTTAGGACTCCTCA.......................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.....................................CAATCAGCAACGACTGAAA............................................................................................................................................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................AGCATGCTGATTAATTCGA............................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GAGGTCGCTGTTGTTATTGACGTCGTCGTTGTGGCCGCTTGGTCGTTGCTCACTTTGACGTTGCCGTTGACGTTGTTAGTACTGACGTTGTAGTTGCTCTTGCTACTTGACGTCGTCGTTTAATTTGATATAAAATACGTTTTTCCAACGGTAAACGTATCAACCGTACGACTAATTACACTGAAAACTAAAACTAAAGCAAAGCTAAGCTAAAACGGCTGAAACTAAAAAACGGACGCGAACTTTTTCAAAACATACATCTTCTACTCTTGGAAAGCTGTGGTTTGCGAACAGGTGTTGCATGTATGTATGCATGTAGGTGTGGCGTTGTGGGCCTGGTTTACGTATGGTGGATTCAAAGACTGTGAGTGTGTGTCTTGTCTGTGGCTTGCGAAGGTCGTGAGCCTTTTAACAAATCCTGAGGTGTCTCTCTAACCCGTTGCCGTTACCTTT
***********************************************************************************************************************************************************************************..(((((.(((.......(((((((...............(((((((((..((...)).)))))))))...)).)))))(((((.((........)).))))).))))))))..(((.......))).(((.(((((((((.(((((((....))))...))).))))))))).)))....********************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................................................................................................................................................................................................GTATGCATGTAGGTGTGGCGT............................................................................................................................. 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTGGCGTTGTGGGCTTGGTT................................................................................................................ 20 1 1 3.00 3 3 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GTGTGGCGTTGTGGGCTTG................................................................................................................... 19 1 1 3.00 3 3 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TATGCATGTAGGTGTGGCGT............................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TTTGCGAACAGGTGTTGCAT...................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TGTGGCGTTGTGGGCTTGGTT................................................................................................................ 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACGGCTGAAACTAAAAAAC............................................................................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TAGGTGTGGCGTTGTGGGCT..................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................GTAGGTGTGGCGTTGTGGGCT..................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGGCTTGCGAAGGTCG..................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................TATGCATGTAGGTGTGGCGTT............................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TAAAACGGCTGAAACTAAAAA.............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGCTAAAACGGCTGAAACTAAA................................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................TGTGGTTTGCGAACAGGTGTT.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTTAGGTGTGGCGTTGTGGGCTT.................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................TTGTAGGTGTGGCGTTGTGGGC...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................CGTATGGTGGATTCAAAGACTG........................................................................................ 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TATGGCGTTGTGGGCTTGGTTTA.............................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AGGTGTGGCGTTGTGGGCTTG................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................TTGGCGTTGTGGGCTTGGTTT............................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TTAGGTGTGGCGTTGTGGG....................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................GTATGCATGTAGGTGTGG................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................ATGTAGGTGTGGCGTTGTGGG....................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................TCTGTGGTTTGCGAACAGGT............................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................ATTGGTGTGGCGTTGTGGGCTT.................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................GTAGGTGTGGCGTTGTGGGCTT.................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGCTTGCGAAGGTCGT.................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AACGGCTGAAACTAAAAAACG........................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................................TTTGTCTGTGGCTTGCGAAGG........................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................CTGTGGCTTGCGAAGGTCGTG................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................GGTGTGGCGTTGTGGGCTTGG.................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.AGGTCGCTGTTGTTATTGACG............................................................................................................................................................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................TGTGGTTTGCGAACAGGTG............................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................GCTGTGGTTTGCGAACAGGT............................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................TTGGTGTGGCGTTGTGGGCTTG................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................GTGGCGTTGTGGGCTTGGTTT............................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................GTGTGGCGTTGTGGGCTTGGT................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................TAAACGGCTGAAACTAAAAAAC............................................................................................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTTAGGTGTGGCGTTGTGGGCT..................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................GTCTGTGGCTTGCGAAGGT....................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................AATGCATGTAGGTGTGGCGTT............................................................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................TTGGAAAGCTGTGGTTTGCGA................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................ATGTGGCGTTGTGGGCTTGGTTT............................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGCTTGCGAAGGTCG..................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................................................GGTGGATTCAAAGACTGTGA..................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GATAAAACGGCTGAA...................................................................................................................................................................................................................................... 15 1 20 0.60 12 0 0 4 7 0 0 0 0 1
................................................................................................................................................................................................................................................................................................................................TTTGGCGTTGTGGGCTTGGTT................................................................................................................ 21 2 4 0.50 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TTTTGGTGTGGCGTTGTGGGCTT.................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................TTTGAGTGTGTGTCTTGTCTGT.................................................................... 22 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ACTAACCCGTTGCCGTTA..... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TTTGTGGGCTTGGTTTACGT........................................................................................................... 20 2 2 0.50 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGATAAAACGGCTGAA...................................................................................................................................................................................................................................... 16 1 6 0.33 2 0 0 0 2 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................GGTGTTGTGAGCCTGGTT................................................................................................................ 18 2 3 0.33 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GCGTTGTGGGTCTGGT................................................................................................................. 16 1 5 0.20 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................................................................................TTAACGGCTGAAACTAAAAA.............................................................................................................................................................................................................................. 20 2 6 0.17 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGGTAAAACGGCTGAA...................................................................................................................................................................................................................................... 16 1 7 0.14 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................TTTGTGGGCTTGGTTTACG............................................................................................................ 19 2 7 0.14 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GGTAAAACGGCTGAA...................................................................................................................................................................................................................................... 15 1 20 0.10 2 0 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................GTGTTGTGAGCCTGGTTGA.............................................................................................................. 19 3 20 0.10 2 0 0 0 0 0 2 0 0 0
..........................................................................................................TTGACGTCGTCGTTT............................................................................................................................................................................................................................................................................................................................................ 15 0 11 0.09 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................TAACGGCTGACACTAAAAAAA............................................................................................................................................................................................................................ 21 3 11 0.09 1 1 0 0 0 0 0 0 0 0
............................TTTTGGCTGCTAGGTCGTTG..................................................................................................................................................................................................................................................................................................................................................................................................................... 20 3 13 0.08 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................GCCAAAACGGCTGAA...................................................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................AAACAGCTGACACTAGAAAA............................................................................................................................................................................................................................. 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................TCTTGTCTGTAGCTT............................................................... 15 1 17 0.06 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................CTGAAAGCTAGAACTAA................................................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................TACCAACGGTTAACGTAT..................................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................GGTTTCCGAACAGTTCTTG......................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
.................TGACGTCGTCGTTGT..................................................................................................................................................................................................................................................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 1 0 0 0 0
...............ATTGACGTCGTCGTTGTTG................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 1 20 0.05 1 0 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................................................................................................TGTGGTTTCCAAGCAGGTG............................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................AGGTAAAACGGCTGA....................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................................................................................................................................GCCTGTGGCGTGCGAA.......................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:17953691-17954143 + dsi_10074 CT------CCAGCGACAACAATAACTGCAGCAGC---------AACACCGGCGAAC---CAGCAAC-------------------------GAGTGAAACTG------CAACGGCAACTGCAACAA---------------TCATG---ACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCGATTCGATTT-TGCCGAC-TTTGATTT-TTTGCCTGCGCTT-GA--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-C-AACGTACAT-------------------------------ACATACGTACATCCACACCGCAACACCCGGACCAAATGCATACCACCTAAGTTTCTGACACTCACAC----ACAGA-ACAGACACC-------------------------------GAAC-----GCTTCCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATGGAAA--
droSec2 scaffold_0:18786194-18786646 + CT------CCAGCGACAACAATAACTGCAGCAGC---------AACACCGGCGAAC---CAGCAAC-------------------------GAGTGAAACTG------CAACGGCAACTGCAACAA---------------TCATG---ACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TTGT--------------------TTCGATTCGATTT-TACCGAC-TTTGATTT-TTTGCCTGCGCTT-GA--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-C-AACGTACAT-------------------------------ACATACGTACATCCACACCGCAACACCCGAACCAAATGCATACCACCTAAGTTTCTGACACTCACAC----ACAGA-ACAGACACC-------------------------------GAAC-----GCTTCCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATGGAAA--
dm3 chr3R:18428013-18428460 + CT------CCAGCGACAACAATAACTGCAGCAGC---------AACACCGGCGAAC---CAGCAAC-------------------------GAGTGAAACTG------CAACAGCAACTGCAACAA---------------TCATA---ACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCGAC-TTTGATTT-TCTGCCTGCGCTT-GA--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-C-AACGTACAT-------------------------------ACATACGTACATCCACACCGCAACACCCGAACCAAATGCATACCACCTAAGTTTCTGACACTCACAC----ACAGA-ACAGACACC-------------------------------GAAC-----GCTTTCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATGGAAA--
droEre2 scaffold_4820:9647381-9647816 - CT------CCAGCGACAACAATAACTGCAGCAGC---------AACACCAGCGAAC---CAGCAGC-------------------------AACTGCAACTG------CAACGGCAACTGCAACAA---------------TCATG---ACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCGAT-TTTGATTT-TTTGCCTGCGCTT-GG--A-AA-ACTTTTGTA--C------G----TAGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-C-AACGTACAT-------------------------------A--------------CACCACAACACCCGAACCAAATGCATACCACCTAAGTTTCTGACACTCACAC----ACAGA-ACAGACACC-------------------------------GAACGC---GCTTTCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATGGAAA--
droYak3 3R:19276729-19277171 + CT------CCAGCGACAACAATAACTGCAACAGC---------AACACCGGCGAAC---CAGCAAC-------------------------AACTGCAACTGCAACTGCAACGGCAACTGCAACAC---------------TCATG---ACT------------G---------C---------------AAC----ATCAACAA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCGAT-TTTGATTT-TTTGCCTGCGCTT-GG--A-AA-ACTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------ACACCAAAACGCTTATCCA-C-AACGTACAA-------------------------------A--------------CACCACAACACCCGAACCAAATGCATACCACCTAAGTTTCTGACACTCACAC----ACAGA-ACAGACACC-------------------------------GAACGC---GCTTTCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATGGAAA--
droEug1 scf7180000409768:557115-557543 + CT------CCAGCGACAACAATAACTGCAGCAGC---------AACATCAGCGAACCAGCAGCAAC-------------------------ATCTG------------------CAACTGCAACAA---------------TCACGACGACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCATT-TTTGATTT-GTTGCCTGCGCTT-GG--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTC--T----CG----------------------------------------------ATACCA-AACGCTTGTCCA-C-AACGTACAT-------------------------------A--------------CACCACAACACACGAACCAAATGCATACCACCCAAGTTTCTGACACTCAC------ACAGA-ACAGACACC-------------------------------GAAC-----GCTTTCAGC-----------ACTCG-GAAAATTGTTTAGGACTC-TC-CT-----CAGA--GAGATTGGGC--AAC----GGCAA-ATGGAAA--
droBia1 scf7180000302402:5293276-5293710 - CT------CCAGCGACAACAATAACTGCGGCAGC------GGCAACACCGGCGAAC---CAGCGAC-------------------------ATCCGCAACTG------CAGCAGCAAGTGCAACAA---------------TCACG---ACTGCGACTGCAGCTG---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AATTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAACGTGACTTTTGATT-----------------------------------------------------------------------------------------------------------TGA-----------------TT-TCGT--------------------TTCG-----ATT--TGCCACT-TTTGATTT-CTTGCCTGCGCTT-GG--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AGCCTC--T----CG----------------------------------------------CCACCA-AACGCTTGTCCA-C-AACGTACAC-------------------------------A--------------CACCACAACAC-------------ATGACACCCAAGTTTCCGACACTCTCAC----ACAGA-ACAGACACC-------------------------------GAAC-----GCTTCCAGC-----------ACTCG-GAAAATTGTTTGGGACTC----CT-----CAGA--GAGATTGGGC--AAC----GGCAA-ATGGAAA--
droTak1 scf7180000415711:585899-586307 - CG------CCAGCGACAACAATAACTGCAACAGC---------AACACCAGCGAAC---CAGCAAC-------------------------ATCTG------------------CAACTGCAACAA---------------TCACG---GCT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCACT-TTTGATTT-CTTGCCTGCGCTT-GG--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTC--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-A-AACGCAAAG-------------------------------A--------------CAC-ACAACACACGAACCAAATGCATAACACCCAAGTTTCTGACA------------------CAGACACC-------------------------------GAAC-----GCTTCCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CT-----CAGA--GAGATTGGGC--AAC----GGCAA-ATGGAAA--
droEle1 scf7180000491280:4331775-4332222 - CCTCATCTCAAGCGACAACAATAACTGCAACAGC---AGCAGCAACATCAACGAAG---CAGCAAC-------------------------ATCTG------------CAGCTGCAACTGCAACAC---------------CCACA---ACTGCG---GCAGCAGCAGCAGCAG------------CAGCAAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TCGA-----------------TT-TCGT--------------------TACG-----ATTT-TGCCACT-TTTGATTT-GTTGCCTGCGCTT-GG--A-AC-AGTTTTGTA--T------G----TAGAAGAT-GAG------------AACAGAACCTC--T----CG----------------------------------------------CCACCA-AATGCTTGTCCA-C-AACGTACAC-------------------------------A--------------CACCATAACACCC--------------------A-----CT--CACTCACAC----ACAGA-ACAGACACC---------------------------CACCGAAC-----GCTTTCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CC-----CAAAGAGAGATTGGGC--AAC----GGCAA-ATGGAAAAA
droRho1 scf7180000779538:575747-576190 - CT------CCAGCGACAACAATAACTGCAGCAGC------AGCAACATCAGCGAAC---CAGCAAC-------------------------ATCTGTTACTG------CAACAGCAACTGCAACGC---------------CCACG---ACT------------G---------C------------AGCAAC----AGCGGCGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TCGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCACT-TTTGATTT-GTTGCCTGCGCTT-GG--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTC--T----CG----------------------------------------------ACACCA-AACGCTTGCCCA-T-AACGTACAT-------------------------------A--------------CACCACAACACACGAACCAAATGCATAACACCAAAGTTTCTGACACTCAC------ACAAA-ACAGACACC---------------------------TACCGAAC-----GCTTTCAGC-----------ACTCGGGAAAATTGTTTAAGACTC----CT-----CAGA--GAGATTGGGC--AAC----GGCAA-ATGGAAA--
droFic1 scf7180000454106:1575320-1575776 + CG------CCAGCGACAACAATAACTGCAGCAGC---------AACACCAGCGAAC---CAGCAAC-------------------------ATCTGCGACTG------CAACTGCAACTGCAACACTTGCAACTGCAACACTT------------------GCAACTGCAACTG------------CAGCAAC----AGCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TCGA-----------------TT-CTGT--------------------TCCG-----ATTT-TGCCACT-TTTGATTT-GTTGCCTGCGCTT-GG--A-AA-AGTTTTGTA--T------G----TAGAAGAC-GAG-----------------AG-CTC--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-AAAACGTACAT-------------------------------A--------------CACCACAACACACGAACCAATTGCATTCCACCCAAGTTTCTGACACCCAC------ACAGA-ACAGACACC-------------------------------GAAC-----GCTTGCGGC-----------ACTCG-GAAAATTGTTTAGGACTC----CT-----CTGG--GAGATTGGGC--AAC----GGCAA-ATGGAAA--
droKik1 scf7180000302706:1665507-1665905 + GG------CTGGCGACAACAACAACTGCCGCAGC---------GAGAGGAGCGAATCCCCAGCAAC-------------------------TGGTG-------------------------------------------------------------------------------------------------------TCCCAA---GAAC---------GATG---------AACTGCAGCAGCAAACTAAACTATATCTTGTGCAAAAAGGTTGCCAT-TCGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTC-ATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-GTGT--------------------TTCG-----ATTTTTGCCTAT-TTTGATTT-G-TGCCTGCGCTT-GG--A-AAGAGTTTTGTA--T------G----TAGAAGA--GAG-----------CAAAAGAACAAC--G----CCACTCTA---------------------------------------------T-AACGCTTGCCA-CA-CACA----CACTCGAACAACAGTCTTTA-----------------------------------------------------------------TCCAACACTCACACGGACACAGACACAGACACC-------------------------------GAAC-----GCTTCCGGC-----------ACTCG-GAAAATTTGTTAGGACTCCTCCCCCGCCCTTGG--GAGATGGGGC--AGCTGCCGGCCA-ATGGAAA--
droAna3 scaffold_13340:21844290-21844617 + CA------GCAGCAGCAACAATAACAGCAGCAGC---------AACATCACCAACC---GATCAGC------------------AAC----AGCAG------------------------------------------------------TG------------G---------CAACATCAACCATACCTCCTGC-C---ACCAGAACAAC---------GATG---------AACTGCAGCAGCAAACTAAACTATATTTTATGTAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TCCG-----------------TT-CCGT---------------------TCG-----ATTA-TGCCACT-TTTGATTT-GTTGCCTGCGCTT-GG--A-GT-ACTTTTGTA--T------G----TAGACGCG-ACC------------AACACAGCCTC--T----CA----------------------------------------------ATGCAACACCGCTTCTCA------------G----------------ACATTCAACACACAAAC---------------------------------ATGCATA----------------C------------A------CAGATAC----------------------------------------------------------------------------------------------------------------------------A--CTCGAAC--
droBip1 scf7180000396583:361703-362076 - CA------GTAGCAGCAACAATAACACCAGCAGC---AGCAGCAGCATCAGCGA-----------C------------------AACATC--AGCCGATCTG------CAACGGTGGCAACAACAA---------------CCAT-----CT------------G---------T---------------GCC----ACCAA-GG---CAAC---------GATG---------AACTGCAGCAGCAAACTAAACTATATTTTATGTAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAAAGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TCGG-----------------TT-TCGT---------------------TCG-----ATTTGTGCCAGT-TTTGAGTT-CTTGCCTGCGCTT-GG--A-TA-ACTTTTGTA--T------G----TAGACGAA-GCC-----------------AGCCCT--T----CG----------------------------------------------ACACAGCAACGCTTCTCA------------G----------------ACATCCAACACACAAAC---------------------------------ATGCATA----------------C------------------ACAGACACC-------------------------------CAACATCCAGCTTCCAGC-----------ACCCG-GAAATTTTGTTAGGATATCTACCT------------------------------------------A--
dp5 2:4177177-4177743 - CG------ACAACAACAACAATAG--GGAACAACAATAGCAGCGAGACCGAAAA-----------C------------------GAGACCG-------AGAGCGAGTGCGAGGGCGA-----------A----AGCAGT----------------------GTAGCAGCAACAG------------CAACGAC----TGCCACGA---GAACTAACAAGAAGATGATCGGAAGCAACTGCAGCAACAAATTAAACTATATCCTATGCAAAAAGGTTGCCATGCTGCATAG-TTGGCATGCC--------------GATTAATGTGATCTTTGACT----------------------------------------------------------------------------------------------------------CTTT-----------------TTTTGATTTGTGA-T--CTCTCTTT--TTTG-----AGT--TGCCAGTTTTTGATTTCTTTGCCTGCGCTT-GG--A-AC-AGTTTTGTATAT------G----TAGAAATTTGATTGATAGTAGACTAAAAGATT--TGCGAAACATACTCTATATCGTATGTGGATCCATGAGGAAACGAAACACCCATAACACACCG-AAAACTTGTCGT-A-CACGTACAC---------------------------------------------------------------CTGCTGCATACCGCATA--CCACAGACACAGACAC----ACAG------CCAC-AGCCAAAAAA--AAAAACAAAA-AAAATAGAGAAC-----GCTTCAAACAAATAAAAGCCACTTT-TGCAATTGTTTAGGACTC----CT-----CAGAGTGAGATTGGGC--AAC----GGCAAAATGGAAA--
droPer2 scaffold_7:175093-175665 + CA------ACAACAACAACAATAG--GGAACAACAATAGCAGCGAGACCGAAAA-----------C------------------GAAACCG-------AGAGCGAGTGCGAGGGCGA-----------A----AGCAGT-------------------GTAGCAACAGCAACAG------------CAACGAC----TGCCACGA---GAACTAACAAGAAGATGATCGGAAGCAACTGCAGCAACAAATTAAACTATATCCTATGCAAAAAGGTTGCCATGCTGCATAG-TTGGCATGCC--------------GATTAATGTGATCTTTGACT----------------------------------------------------------------------------------------------------------CTTT-----------------TTTTGATTTGTGA-T--CTCTCTTT--TTTG-----AGT--TGCCAGTTTTTGATTTCTTTGCCTGCGCTT-GG--A-AC-AGTTTTGTAAAT------G----TAGAAATTTGATTGATAGTAGACTAAAAGATT--TGCGAAACATACTCTATATCGTATGTGGATCCATGAGGAAACGAAACACCCATAACACACCG-AAAACTTGTCGT-A-CACGTACAC---------------------------------------------------------------CTGCTGCATACCGCATA--CCACAGACACAGACAC----ACAG------CCAC-AGCCAAAAAAAAAAAAACAAAAAAAAATAGAGAAC-----GCTTCAAACAAATAAAAGCCACTTT-TGCAATTGTTTAGGACTC----CT-----CAGAGTGAGATTGGGC--AAC----GGCAAAATGGAAA--
droWil2 scf2_1100000004902:4054896-4055412 - CT------ACAAGAATAACACCA---GCAACAGC---------AACGATGGC--AT---CAGCTGCAAAAGAAATAATAACAACAACGAA--AG------------------------------ACGAACAGCGGCAATATTA------ACA------------A---------C------------AACAACAACCAGCAGCAA---CAAC---------AA-A---------AGTGGCAGCAACAAATTAAACTATATATTATATAAAAAGGTTGCCAT-TAAT------------------------------------GTGTCTCTG---TGTGTGTTTAATAATCATCCATTAATGACAATGATATGACGATATGGGGCATGCAAAATGAAAAAAAAAAAATAATAATTTTAAAGATTTTGTAATTTGAAGTAATTTTGAAATGTGTTTAAAAGCAATTTTTGT--------------------TGGC-----ATTT-TGT---T-TTATTTTT-GTTGCCTGCGCTT-GC--A-AAACGTTCTGTT--CTTAACCGTAGATAAATGTT-TAA-----------------A-ACTA--A----CA----------------------------------------------AACTCA-AATGCTTATCA-CA-CACA----A-------------------------------AC------ACATTTACAC---------------------------------TGACTGAAACTCACAC----ACAC--ACAAATACT-------------------------------ACAC-----CCA---CAC-----------ACTTG-GC-AATTGTTTAGGAATC----CA-----C-------GATTGGGCTTATA----AGCAA-AAAAAAA--
droVir3 scaffold_13047:10200950-10201300 - T----------GCAACAACAATAACAATAACAAT---------GAGAACAACGAATTGTCACCAG-------------------------------------------CAACGGCAACAGCAACAA---------------CAACA---------------------------A------------CAACAAC----AGCTACAA---CAA------------------GCGGCGGCTGCAGCAACAAATTAAACTATATTTTACGCAAAAAGGTTGCCAT-TTGTTAAGCATGGCATGCT-----------CTGAATTAATGTGACTTAC---TGC-G------------------------------------------------------------------------------------------------------T--------------------TTATCATT-------------------TGCA-----AATTTT-----T-TATGCTTT-GTTGCCTGCACCT-GTGCC-AA-ACGTTTGTA--T------G----TAGACAAA-A------------------------------------------------------------------------------------CT-AACGCTTACCGACA-CACA----G-------------------------------AT---------------------------------A----------------CTCTTACACATACAC----AC--------------------------------------------AAAC-----GG---CTAC-----------ACTTG-GC-AATTATTGAGGG-TC----CT-----CT----CAGATTGGGC--AAC----GGCAT-ATGGAAA--
droMoj3 scaffold_6540:28351547-28351935 - CG------CCAGCAACAACACCA---------------------------GCGAA-----AGCAAC-------------------------AACAA------------------CAATGGCAACAA---------------CAAAA---GCG------ACAGCAGCAACAAGAG------------CAACAAC----CACTACAA---CAG------------------GCAGCGGCTGCAGCAACAAATTAAACTATATTTTACGCAAAAAGGTTGCCAT-TTGTTAAGCATGGCATGCACAAGAATAATTCATAATTAATGTGATTTGC---TGT-G------------------------------------------------------------------------------------------------------T--------------------TTATCGTT-------------------TGCG-----AATATT-----T-TCTGTTTT-GTTGCCTGCCTGTTGTGCT-AA-ACGTTTGTA--T------G----TAGACAGC-AAGTA---------------GTCCT----------------------------------------------------------AACT-AAAGCTTACCGACA-CACA----G-------------------------------AT------------ACTC-TGAAAACACAAA--------------------T---CGACACACAC------AC--------------------------------------------AAAC-----GG---CTAC-----------ACTTG-GC-AATTATTTAGGGCTC-TCCCT-----CTCT--CAGATTGGGC--AAC----GGCAA-ATGGA-A--
droGri2 scaffold_15074:3864091-3864387 + CA------ATAACAATAACAATGAG-GCCACAGC------CGAATTGCCGCC--AT---TATCACC-------------------------AAGTAAAGCAG------CAGCAACAACAACAACAA---------------CAATA---ACC------GCAACAG---------C---------------AGT----ATCAGCAA---CAAC---------TAG------CCGAGGCTGCAGCAACAAATTAAACTATATTTTACGCAAAAAGGTTGCCAT-TTGTTAAGCATGGCATGTTTGA----------GAATTAATCTGCTTATC---TGT-G------------------------------------------------------------------------------------------------------T--A-----------------TTATAATTTGCCAGTCGCTGTTTTTCTTTAGTTTTTGTTT-TTC---C-TTTGTGTT-GTTGCCTGCGCTT-TTGCCAAAACCGTTTGTA--T-----CG----TAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CT------CCAGCGACAACAATAACTGCAGCAGC---------AACACCGGCGAAC---CAGCAAC-------------------------GAGTGAAACTG------CAACGGCAACTGCAACAA---------------TCATG---ACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCGATTCGATTT-TGCCGAC-TTTGATTT-TTTGCCTGCGCTT-GA--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-C-AACGTACAT-------------------------------ACATACGTACATCCACACCGCAACACCCGGACCAAATGCATACCACCTAAGTTTCTGACACTCACAC----ACAGA-ACAGACACC-------------------------------GAAC-----GCTTCCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATGGAAA--SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--T------G----TAGAAGAT-GAG-----------------AACCT...................................................................................................................................................................................................................................................................................................................................................2013.00300000000000003000
........................................................................................................................................................................................................AACGA---GAAC---------GATG---------AACTGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.00330000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTC----CA-----CAGA--GAGATT............................1912.00200000200000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTC----CA-----CAGA--GAGAT.............................1812.00200000200000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----CAGA--GAGATTGGGC--AAC----GG.............2012.00200000000000002000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AGTTTTGTA--T------G----TAGAAGAT-G...........................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTA--T------G----TAGAAGAT-GAG-----------------A.......................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------...........................................................................................................................................................................................................................................................................................1912.00200000000000002000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA--T------G----TAGAAGAT-GAG-----------------AACC....................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--T------G----TAGAAGAT-GAG-----------------AAAA....................................................................................................................................................................................................................................................................................................................................................1921.00200000000000002000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA--T------G----TAGAAGAT-GAG-----------------AAA.....................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----CAGA--GAGATTGGGC--AAC----G..............2011.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA--T------G----TAGAAGAT-GAG-----------------AAA.....................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA--T------G----TAGAAGAT-GAG-----------------AA......................................................................................................................................................................................................................................................................................................................................................1911.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA--GAGATTGGGC--AAC----GGCA--A........2111.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTA--T------G----TAGAAGAT-GAG-----------------A.......................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-ACAGACACC-------------------------------GAAC-----GCTA...........................................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--T------G----TAGAAGAT-GAG-----------------AACCTT--T----...........................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTA--T------G----TAGAAGAT-GAG-----------------........................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGCATACCACCTAAGTTT.......................................................................................................................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA--T------G----TAGAAGAT-GAG-----------------AACC....................................................................................................................................................................................................................................................................................................................................................2211.00100001000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--T------G----TAGAAGAT-GAG-----------------AACCTT--................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
................................................................................................................................................TG---ACT------------G---------C---------------AAC----ATCAACGA---GAAC---------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCG-GAAAATTGTTTAGGAC.....................................................2111.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--T------G----TAGAAGAT-GAG-----------------AACCTT--................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTA--T------G----TAGAAGAT-GAG-----------------AA......................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----ACAGA-ACAGACACC-------------------------------GAAC-----GCT............................................................................................2211.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA--T------G----TAGAAGAT-GAG-----------------AAC.....................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTACATCCACACCGCAACACC..................................................................................................................................................................................................2211.00100001000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC-----------ACTCG-GAAAATTGTTTA.........................................................2011.00100000000000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTA--T------G----TAGAAGAT-GAG-----------------........................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----CAGA--GAGATTGGGC--AAC----GG.............2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATTGGGC--AAC----GGCA--ATGGA....2211.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGA--GAGATTGGGC--AAC----GGCA--AA.......2211.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTA--T------G----TAGAAGAT-GAG-----------------AA......................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--T------G----TAGAAGAT-GAG-----------------AACCTA--................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA--GAGATTGGGC--AAC----GGCA--T........2211.00100000000000001000
droSec2
CT------CCAGCGACAACAATAACTGCAGCAGC---------AACACCGGCGAAC---CAGCAAC-------------------------GAGTGAAACTG------CAACGGCAACTGCAACAA---------------TCATG---ACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TTGT--------------------TTCGATTCGATTT-TACCGAC-TTTGATTT-TTTGCCTGCGCTT-GA--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-C-AACGTACAT-------------------------------ACATACGTACATCCACACCGCAACACCCGAACCAAATGCATACCACCTAAGTTTCTGACACTCACAC----ACAGA-ACAGACACC-------------------------------GAAC-----GCTTCCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATGGAAA--SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................CATAG-TTGGCATGCT--------------GATT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
CT------CCAGCGACAACAATAACTGCAGCAGC---------AACACCGGCGAAC---CAGCAAC-------------------------GAGTGAAACTG------CAACAGCAACTGCAACAA---------------TCATA---ACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCGAC-TTTGATTT-TCTGCCTGCGCTT-GA--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-C-AACGTACAT-------------------------------ACATACGTACATCCACACCGCAACACCCGAACCAAATGCATACCACCTAAGTTTCTGACACTCACAC----ACAGA-ACAGACACC-------------------------------GAAC-----GCTTTCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATGGAAA--SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC----CA-----CAGA--GAGATTGGGC--AAC----GGC............2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----ACAGA-ACAGACACC-------------------------------GAAC-----GCTT...........................................................................................2311.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA-ACAGACACC-------------------------------GAAC-----GCTT...........................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................CGGCGAAC---CAGCAAC-------------------------GAGTGAAACTG------CA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTA--T------G----TAGAAGAT-GAG-----------------AA......................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC----CA-----CAGA--GAGATTGGGC--AAC----GGC............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................................................................ACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGA-ACAGACACC-------------------------------GAAC-----GCTTTCA........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................C----ATCAACGA---GAAC---------GATG---------AAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATG......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GA--A-AA-AGTTTTGTA--T------G----TAGAAGA..............................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................GTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................GCT--------------GATTAATGTGACTTTTGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................AAC----ATCAACGA---GAAC---------GAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTC----CA-----CAGA--GAGATTGGG.........................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTA--T------G----TAGAAGAT-GAG-----------------A.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----GCTTTCAGC-----------ACTCG-GAAAATTGTTT..........................................................2611.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CT------CCAGCGACAACAATAACTGCAGCAGC---------AACACCAGCGAAC---CAGCAGC-------------------------AACTGCAACTG------CAACGGCAACTGCAACAA---------------TCATG---ACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCGAT-TTTGATTT-TTTGCCTGCGCTT-GG--A-AA-ACTTTTGTA--C------G----TAGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-C-AACGTACAT-------------------------------A--------------CACCACAACACCCGAACCAAATGCATACCACCTAAGTTTCTGACACTCACAC----ACAGA-ACAGACACC-------------------------------GAACGC---GCTTTCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATGGAAA--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACACC-------------------------------GAACGC---GCTTTCAG.......................................................................................2111.0010000010
droYak3
CT------CCAGCGACAACAATAACTGCAACAGC---------AACACCGGCGAAC---CAGCAAC-------------------------AACTGCAACTGCAACTGCAACGGCAACTGCAACAC---------------TCATG---ACT------------G---------C---------------AAC----ATCAACAA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCGAT-TTTGATTT-TTTGCCTGCGCTT-GG--A-AA-ACTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTT--T----CG----------------------------------------------ACACCAAAACGCTTATCCA-C-AACGTACAA-------------------------------A--------------CACCACAACACCCGAACCAAATGCATACCACCTAAGTTTCTGACACTCACAC----ACAGA-ACAGACACC-------------------------------GAACGC---GCTTTCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CA-----CAGA--GAGATTGGGC--AAC----GGCA--ATGGAAA--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTA--T------G----TAGAAGAT-GAG-----------------AACC....................................................................................................................................................................................................................................................................................................................................................2212.00220000000000
...............................................................................................................................................................................................................................................................................................TAG-TTGGCATGCT--------------GATTAATGTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTA--T------G----TAGAAGAT-GAG-----------------AACC....................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
droEug1
CT------CCAGCGACAACAATAACTGCAGCAGC---------AACATCAGCGAACCAGCAGCAAC-------------------------ATCTG------------------CAACTGCAACAA---------------TCACGACGACT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCATT-TTTGATTT-GTTGCCTGCGCTT-GG--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTC--T----CG----------------------------------------------ATACCA-AACGCTTGTCCA-C-AACGTACAT-------------------------------A--------------CACCACAACACACGAACCAAATGCATACCACCCAAGTTTCTGACACTCAC------ACAGA-ACAGACACC-------------------------------GAAC-----GCTTTCAGC-----------ACTCG-GAAAATTGTTTAGGACTC-TC-CT-----CAGA--GAGATTGGGC--AAC----GGCAA-ATGGAAA--SizeHit CountTotal NormTotal
No Reads
droBia1
CT------CCAGCGACAACAATAACTGCGGCAGC------GGCAACACCGGCGAAC---CAGCGAC-------------------------ATCCGCAACTG------CAGCAGCAAGTGCAACAA---------------TCACG---ACTGCGACTGCAGCTG---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AATTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAACGTGACTTTTGATT-----------------------------------------------------------------------------------------------------------TGA-----------------TT-TCGT--------------------TTCG-----ATT--TGCCACT-TTTGATTT-CTTGCCTGCGCTT-GG--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AGCCTC--T----CG----------------------------------------------CCACCA-AACGCTTGTCCA-C-AACGTACAC-------------------------------A--------------CACCACAACAC-------------ATGACACCCAAGTTTCCGACACTCTCAC----ACAGA-ACAGACACC-------------------------------GAAC-----GCTTCCAGC-----------ACTCG-GAAAATTGTTTGGGACTC----CT-----CAGA--GAGATTGGGC--AAC----GGCAA-ATGGAAA--SizeHit CountTotal NormTotal
No Reads
droTak1
CG------CCAGCGACAACAATAACTGCAACAGC---------AACACCAGCGAAC---CAGCAAC-------------------------ATCTG------------------CAACTGCAACAA---------------TCACG---GCT------------G---------C---------------AAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCACT-TTTGATTT-CTTGCCTGCGCTT-GG--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTC--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-A-AACGCAAAG-------------------------------A--------------CAC-ACAACACACGAACCAAATGCATAACACCCAAGTTTCTGACA------------------CAGACACC-------------------------------GAAC-----GCTTCCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CT-----CAGA--GAGATTGGGC--AAC----GGCAA-ATGGAAA--SizeHit CountTotal NormTotal
No Reads
droEle1
CCTCATCTCAAGCGACAACAATAACTGCAACAGC---AGCAGCAACATCAACGAAG---CAGCAAC-------------------------ATCTG------------CAGCTGCAACTGCAACAC---------------CCACA---ACTGCG---GCAGCAGCAGCAGCAG------------CAGCAAC----ATCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TCGA-----------------TT-TCGT--------------------TACG-----ATTT-TGCCACT-TTTGATTT-GTTGCCTGCGCTT-GG--A-AC-AGTTTTGTA--T------G----TAGAAGAT-GAG------------AACAGAACCTC--T----CG----------------------------------------------CCACCA-AATGCTTGTCCA-C-AACGTACAC-------------------------------A--------------CACCATAACACCC--------------------A-----CT--CACTCACAC----ACAGA-ACAGACACC---------------------------CACCGAAC-----GCTTTCAGC-----------ACTCG-GAAAATTGTTTAGGACTC----CC-----CAAAGAGAGATTGGGC--AAC----GGCAA-ATGGAAAAASizeHit CountTotal NormTotal
No Reads
droRho1
CT------CCAGCGACAACAATAACTGCAGCAGC------AGCAACATCAGCGAAC---CAGCAAC-------------------------ATCTGTTACTG------CAACAGCAACTGCAACGC---------------CCACG---ACT------------G---------C------------AGCAAC----AGCGGCGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TCGA-----------------TT-TCGT--------------------TTCG-----ATTT-TGCCACT-TTTGATTT-GTTGCCTGCGCTT-GG--A-AA-AGTTTTGTA--T------G----TAGAAGAT-GAG-----------------AACCTC--T----CG----------------------------------------------ACACCA-AACGCTTGCCCA-T-AACGTACAT-------------------------------A--------------CACCACAACACACGAACCAAATGCATAACACCAAAGTTTCTGACACTCAC------ACAAA-ACAGACACC---------------------------TACCGAAC-----GCTTTCAGC-----------ACTCGGGAAAATTGTTTAAGACTC----CT-----CAGA--GAGATTGGGC--AAC----GGCAA-ATGGAAA--SizeHit CountTotal NormTotal
No Reads
droFic1
CG------CCAGCGACAACAATAACTGCAGCAGC---------AACACCAGCGAAC---CAGCAAC-------------------------ATCTGCGACTG------CAACTGCAACTGCAACACTTGCAACTGCAACACTT------------------GCAACTGCAACTG------------CAGCAAC----AGCAACGA---GAAC---------GATG---------AACTGCAGCAGCAAATTAAACTATATTTTATGCAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TCGA-----------------TT-CTGT--------------------TCCG-----ATTT-TGCCACT-TTTGATTT-GTTGCCTGCGCTT-GG--A-AA-AGTTTTGTA--T------G----TAGAAGAC-GAG-----------------AG-CTC--T----CG----------------------------------------------ACACCA-AACGCTTGTCCA-AAAACGTACAT-------------------------------A--------------CACCACAACACACGAACCAATTGCATTCCACCCAAGTTTCTGACACCCAC------ACAGA-ACAGACACC-------------------------------GAAC-----GCTTGCGGC-----------ACTCG-GAAAATTGTTTAGGACTC----CT-----CTGG--GAGATTGGGC--AAC----GGCAA-ATGGAAA--SizeHit CountTotal NormTotal
No Reads
droKik1
GG------CTGGCGACAACAACAACTGCCGCAGC---------GAGAGGAGCGAATCCCCAGCAAC-------------------------TGGTG-------------------------------------------------------------------------------------------------------TCCCAA---GAAC---------GATG---------AACTGCAGCAGCAAACTAAACTATATCTTGTGCAAAAAGGTTGCCAT-TCGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTC-ATT----------------------------------------------------------------------------------------------------------TTGA-----------------TT-GTGT--------------------TTCG-----ATTTTTGCCTAT-TTTGATTT-G-TGCCTGCGCTT-GG--A-AAGAGTTTTGTA--T------G----TAGAAGA--GAG-----------CAAAAGAACAAC--G----CCACTCTA---------------------------------------------T-AACGCTTGCCA-CA-CACA----CACTCGAACAACAGTCTTTA-----------------------------------------------------------------TCCAACACTCACACGGACACAGACACAGACACC-------------------------------GAAC-----GCTTCCGGC-----------ACTCG-GAAAATTTGTTAGGACTCCTCCCCCGCCCTTGG--GAGATGGGGC--AGCTGCCGGCCA-ATGGAAA--SizeHit CountTotal NormTotal
No Reads
droAna3
CA------GCAGCAGCAACAATAACAGCAGCAGC---------AACATCACCAACC---GATCAGC------------------AAC----AGCAG------------------------------------------------------TG------------G---------CAACATCAACCATACCTCCTGC-C---ACCAGAACAAC---------GATG---------AACTGCAGCAGCAAACTAAACTATATTTTATGTAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAATGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TCCG-----------------TT-CCGT---------------------TCG-----ATTA-TGCCACT-TTTGATTT-GTTGCCTGCGCTT-GG--A-GT-ACTTTTGTA--T------G----TAGACGCG-ACC------------AACACAGCCTC--T----CA----------------------------------------------ATGCAACACCGCTTCTCA------------G----------------ACATTCAACACACAAAC---------------------------------ATGCATA----------------C------------A------CAGATAC----------------------------------------------------------------------------------------------------------------------------A--CTCGAAC--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CA------GTAGCAGCAACAATAACACCAGCAGC---AGCAGCAGCATCAGCGA-----------C------------------AACATC--AGCCGATCTG------CAACGGTGGCAACAACAA---------------CCAT-----CT------------G---------T---------------GCC----ACCAA-GG---CAAC---------GATG---------AACTGCAGCAGCAAACTAAACTATATTTTATGTAAAAAGGTTGCCAT-TTGCATAG-TTGGCATGCT--------------GATTAAAGTGACTTTTGATT----------------------------------------------------------------------------------------------------------TCGG-----------------TT-TCGT---------------------TCG-----ATTTGTGCCAGT-TTTGAGTT-CTTGCCTGCGCTT-GG--A-TA-ACTTTTGTA--T------G----TAGACGAA-GCC-----------------AGCCCT--T----CG----------------------------------------------ACACAGCAACGCTTCTCA------------G----------------ACATCCAACACACAAAC---------------------------------ATGCATA----------------C------------------ACAGACACC-------------------------------CAACATCCAGCTTCCAGC-----------ACCCG-GAAATTTTGTTAGGATATCTACCT------------------------------------------A--SizeHit CountTotal NormTotal
No Reads
dp5
CG------ACAACAACAACAATAG--GGAACAACAATAGCAGCGAGACCGAAAA-----------C------------------GAGACCG-------AGAGCGAGTGCGAGGGCGA-----------A----AGCAGT----------------------GTAGCAGCAACAG------------CAACGAC----TGCCACGA---GAACTAACAAGAAGATGATCGGAAGCAACTGCAGCAACAAATTAAACTATATCCTATGCAAAAAGGTTGCCATGCTGCATAG-TTGGCATGCC--------------GATTAATGTGATCTTTGACT----------------------------------------------------------------------------------------------------------CTTT-----------------TTTTGATTTGTGA-T--CTCTCTTT--TTTG-----AGT--TGCCAGTTTTTGATTTCTTTGCCTGCGCTT-GG--A-AC-AGTTTTGTATAT------G----TAGAAATTTGATTGATAGTAGACTAAAAGATT--TGCGAAACATACTCTATATCGTATGTGGATCCATGAGGAAACGAAACACCCATAACACACCG-AAAACTTGTCGT-A-CACGTACAC---------------------------------------------------------------CTGCTGCATACCGCATA--CCACAGACACAGACAC----ACAG------CCAC-AGCCAAAAAA--AAAAACAAAA-AAAATAGAGAAC-----GCTTCAAACAAATAAAAGCCACTTT-TGCAATTGTTTAGGACTC----CT-----CAGAGTGAGATTGGGC--AAC----GGCAAAATGGAAA--SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................AGATGATCGGAAGCAACTGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGCCTGCGCTT-GG--A-A..............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACACAGACAC----ACAG------CCA.........................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................ATGATCGGAAGCAACTGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
CA------ACAACAACAACAATAG--GGAACAACAATAGCAGCGAGACCGAAAA-----------C------------------GAAACCG-------AGAGCGAGTGCGAGGGCGA-----------A----AGCAGT-------------------GTAGCAACAGCAACAG------------CAACGAC----TGCCACGA---GAACTAACAAGAAGATGATCGGAAGCAACTGCAGCAACAAATTAAACTATATCCTATGCAAAAAGGTTGCCATGCTGCATAG-TTGGCATGCC--------------GATTAATGTGATCTTTGACT----------------------------------------------------------------------------------------------------------CTTT-----------------TTTTGATTTGTGA-T--CTCTCTTT--TTTG-----AGT--TGCCAGTTTTTGATTTCTTTGCCTGCGCTT-GG--A-AC-AGTTTTGTAAAT------G----TAGAAATTTGATTGATAGTAGACTAAAAGATT--TGCGAAACATACTCTATATCGTATGTGGATCCATGAGGAAACGAAACACCCATAACACACCG-AAAACTTGTCGT-A-CACGTACAC---------------------------------------------------------------CTGCTGCATACCGCATA--CCACAGACACAGACAC----ACAG------CCAC-AGCCAAAAAAAAAAAAACAAAAAAAAATAGAGAAC-----GCTTCAAACAAATAAAAGCCACTTT-TGCAATTGTTTAGGACTC----CT-----CAGAGTGAGATTGGGC--AAC----GGCAAAATGGAAA--SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CT------ACAAGAATAACACCA---GCAACAGC---------AACGATGGC--AT---CAGCTGCAAAAGAAATAATAACAACAACGAA--AG------------------------------ACGAACAGCGGCAATATTA------ACA------------A---------C------------AACAACAACCAGCAGCAA---CAAC---------AA-A---------AGTGGCAGCAACAAATTAAACTATATATTATATAAAAAGGTTGCCAT-TAAT------------------------------------GTGTCTCTG---TGTGTGTTTAATAATCATCCATTAATGACAATGATATGACGATATGGGGCATGCAAAATGAAAAAAAAAAAATAATAATTTTAAAGATTTTGTAATTTGAAGTAATTTTGAAATGTGTTTAAAAGCAATTTTTGT--------------------TGGC-----ATTT-TGT---T-TTATTTTT-GTTGCCTGCGCTT-GC--A-AAACGTTCTGTT--CTTAACCGTAGATAAATGTT-TAA-----------------A-ACTA--A----CA----------------------------------------------AACTCA-AATGCTTATCA-CA-CACA----A-------------------------------AC------ACATTTACAC---------------------------------TGACTGAAACTCACAC----ACAC--ACAAATACT-------------------------------ACAC-----CCA---CAC-----------ACTTG-GC-AATTGTTTAGGAATC----CA-----C-------GATTGGGCTTATA----AGCAA-AAAAAAA--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
CT------ACAAGAATAACACCA---GCAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT-TGT---T-TTATTTTT-GTTGCCTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.......................................................................................................................................................................................................................................................................................AT-TAAT------------------------------------GTGTCTCTG---TGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................................................................................CAACGAA--AG------------------------------ACGAACAGCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
droVir3
T----------GCAACAACAATAACAATAACAAT---------GAGAACAACGAATTGTCACCAG-------------------------------------------CAACGGCAACAGCAACAA---------------CAACA---------------------------A------------CAACAAC----AGCTACAA---CAA------------------GCGGCGGCTGCAGCAACAAATTAAACTATATTTTACGCAAAAAGGTTGCCAT-TTGTTAAGCATGGCATGCT-----------CTGAATTAATGTGACTTAC---TGC-G------------------------------------------------------------------------------------------------------T--------------------TTATCATT-------------------TGCA-----AATTTT-----T-TATGCTTT-GTTGCCTGCACCT-GTGCC-AA-ACGTTTGTA--T------G----TAGACAAA-A------------------------------------------------------------------------------------CT-AACGCTTACCGACA-CACA----G-------------------------------AT---------------------------------A----------------CTCTTACACATACAC----AC--------------------------------------------AAAC-----GG---CTAC-----------ACTTG-GC-AATTATTGAGGG-TC----CT-----CT----CAGATTGGGC--AAC----GGCAT-ATGGAAA--SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................................................................................................................CTACAA---CAA------------------GCGGCGGCTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................................................ACTATATTTTACGCAAAAAGGTTGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................AACAA---------------CAACA---------------------------A------------CAACAAC----AGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
CG------CCAGCAACAACACCA---------------------------GCGAA-----AGCAAC-------------------------AACAA------------------CAATGGCAACAA---------------CAAAA---GCG------ACAGCAGCAACAAGAG------------CAACAAC----CACTACAA---CAG------------------GCAGCGGCTGCAGCAACAAATTAAACTATATTTTACGCAAAAAGGTTGCCAT-TTGTTAAGCATGGCATGCACAAGAATAATTCATAATTAATGTGATTTGC---TGT-G------------------------------------------------------------------------------------------------------T--------------------TTATCGTT-------------------TGCG-----AATATT-----T-TCTGTTTT-GTTGCCTGCCTGTTGTGCT-AA-ACGTTTGTA--T------G----TAGACAGC-AAGTA---------------GTCCT----------------------------------------------------------AACT-AAAGCTTACCGACA-CACA----G-------------------------------AT------------ACTC-TGAAAACACAAA--------------------T---CGACACACAC------AC--------------------------------------------AAAC-----GG---CTAC-----------ACTTG-GC-AATTATTTAGGGCTC-TCCCT-----CTCT--CAGATTGGGC--AAC----GGCAA-ATGGA-A--SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACT-AAAGCTTACCGACA-CACA----G-------------------------------.............................................................................................................................................................................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TCCCT-----CTCT--CAGATTGGGC--AAC----GG.............2511.001100000
.....................................................................................................................................................................................................................................................................................................GGCATGCACAAGAATAATTCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droGri2
CA------ATAACAATAACAATGAG-GCCACAGC------CGAATTGCCGCC--AT---TATCACC-------------------------AAGTAAAGCAG------CAGCAACAACAACAACAA---------------CAATA---ACC------GCAACAG---------C---------------AGT----ATCAGCAA---CAAC---------TAG------CCGAGGCTGCAGCAACAAATTAAACTATATTTTACGCAAAAAGGTTGCCAT-TTGTTAAGCATGGCATGTTTGA----------GAATTAATCTGCTTATC---TGT-G------------------------------------------------------------------------------------------------------T--A-----------------TTATAATTTGCCAGTCGCTGTTTTTCTTTAGTTTTTGTTT-TTC---C-TTTGTGTT-GTTGCCTGCGCTT-TTGCCAAAACCGTTTGTA--T-----CG----TAGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................AGCAG------CAGCAACAACAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05110

Generated: 05/18/2015 at 05:30 PM