ID:

dsi_10016

 Coordinate:

3l:19418276-19418427 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.9 -13.8 -13.7 -13.6

Flybase annnotation

exon [3l_19418428_19418502_-]; CDS [3l_19418428_19418502_-]; exon [3l_19417821_19418275_-]; CDS [3l_19417821_19418275_-]; intron [3l_19418276_19418427_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GAAAACTACGACGATGAGAAGTCAGCCAGAACCTCCGATGAAAATCGCAAGTAATGAAAAAATTTTTAAAACTTAACTAAATCCATATCCATTTATTCGACTTCAAGAACTAATGTTGATTATTTTAGAAAAGTTAATTGGTCTTTAAAATCAGATTCCTGCATCCATATTCATTTATAATTTTAACATTATATCATATTAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAAGATGAACACGT
**************************************************...........................................................(((((..((((........((((..(((.(((..........(((....))).........))).)))...))))........)))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
..............TGAGAAGTCAGCCAGAACCTCCGATGAAA................................................................................................................................................................................................................. 29 0 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................................AGAAGCGGCGTCGGGACAAGATGAAC.... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................TCGAGAAGCGGCGTCGGGACA............ 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAAGCGGCGTCGGGGCCAGA......... 20 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................................................................................TTTAGAAAAGTTAATTGGTC............................................................................................................. 20 0 1 1.00 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................................................................AATCACAGCGAGATCGAGAAGCGGC..................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAAGCGGCGTCGAGA.............. 15 1 12 0.58 7 7 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAAGCGGCGTCGGGCC............. 16 1 2 0.50 1 1 0 0 0 0 0 0 0
.................................................................................................................................AGAGTTAATTGGGCTTTAAA....................................................................................................... 20 2 3 0.33 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................GAAGCGGCGTCGCGAGAAGATT....... 22 3 3 0.33 1 1 0 0 0 0 0 0 0
.....................................................ATGAAAAAATTTTTAAAAGT................................................................................................................................................................................... 20 1 3 0.33 1 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................GAAGCGGCGTCGGGAT............. 16 1 4 0.25 1 1 0 0 0 0 0 0 0
.........................................................................TTACTAGATCCACATCCATT............................................................................................................................................................... 20 3 11 0.18 2 0 0 2 0 0 0 0 0
...............................................................................................................................................................................................................................GAAGCGGCGTCGGGC.............. 15 1 6 0.17 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAAGCGGCGTCGGTA.............. 15 1 6 0.17 1 1 0 0 0 0 0 0 0
.........................................................................TGACTAGATCCACATCCATTT.............................................................................................................................................................. 21 3 6 0.17 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................GAAGCGGCGTCGAGAAAA........... 18 2 9 0.11 1 1 0 0 0 0 0 0 0
......................................................TGACAAAATTTTTAAAACTCAT................................................................................................................................................................................ 22 3 9 0.11 1 0 0 0 0 0 0 1 0
....................................................................................................................................................................................................................TGCGAGGTCGAGAAGC........................ 16 2 20 0.10 2 0 0 0 0 0 0 0 2
...............................................................................................................................................................................................................................GAAGCGGCGTCGGGGCC............ 17 2 11 0.09 1 1 0 0 0 0 0 0 0
..................................................ATTATGAAAAAATTTTTAAAACC................................................................................................................................................................................... 23 3 13 0.08 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAAGCGGCGTCGCTACA............ 17 2 14 0.07 1 1 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AATCACAGGGAGACCGATA........................... 19 3 17 0.06 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................GAAGCGGCGTCGAGAAA............ 17 2 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

CTTTTGATGCTGCTACTCTTCAGTCGGTCTTGGAGGCTACTTTTAGCGTTCATTACTTTTTTAAAAATTTTGAATTGATTTAGGTATAGGTAAATAAGCTGAAGTTCTTGATTACAACTAATAAAATCTTTTCAATTAACCAGAAATTTTAGTCTAAGGACGTAGGTATAAGTAAATATTAAAATTGTAATATAGTATAATCCGTTTTAGTGTCGCTCTAGCTCTTCGCCGCAGCCCTGTTCTACTTGTGCA
**************************************************...........................................................(((((..((((........((((..(((.(((..........(((....))).........))).)))...))))........)))).)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................GAACTTCTTGATTACAACTAAAT................................................................................................................................. 23 3 1 1.00 1 0 1 0 0
..........................................................................................................................................................TAAAGTCGTAGGTATAAGTAAATA.......................................................................... 24 2 1 1.00 1 1 0 0 0
....................................................................................................................................................................................AAAATTGTAATATAGTAT...................................................... 18 0 1 1.00 1 0 0 1 0
................................................................................................................................................................................................................AGAGTCGCTCTAGCTCT........................... 17 1 6 0.17 1 1 0 0 0
.............................TTGGAGGCTGCTTCTAG.............................................................................................................................................................................................................. 17 2 11 0.09 1 1 0 0 0
..................................................................................................................................................................................................................TGTGGCTCTAGCTCT........................... 15 1 14 0.07 1 0 0 0 1
...........................................................................................................................................................................................................................AGATCTTCGCTGCAGC................. 16 2 20 0.05 1 1 0 0 0
....................................................................................................................................................................................................................GCGCTCCAGCTCTTCG........................ 16 2 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:19418226-19418477 - dsi_10016 GAAAACTACGACGATGAGAAGTCAGCCA---GAACCTCCGATGAAAATCGCAAGTAAT---------------------------GAAAAA----------------------------------ATTTTTAAAAC-----------TTAACTAAATCC--------------A-------------------------------------------------------------TATCCATTTATTCGACTTCAAGAACTAATGTTG-------------------------------------------------------ATTATTTTAGAAAAGTTAATTGGTCTTTA-AAATCA-GATT--------CCTGCATCCA-T------ATTCATTTATAATTTTAAC----ATTA----------------------------------------------------------------------TA--------T----------------------------------------------------C------AT--------------------------------------------ATTAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAAGATGAACACGT
droSec2 scaffold_29:469548-469794 - GAAAACTACGACGATGAAAAGTCAGCCA---GAACCTCCGATGAAAATCGCAAGTAAG---------------------------GAAAAC----------------------------------ATTTTTCAAAC-----------TTAACTAAATCC--------------A-------------------------------------------------------------TATCCATTTATTCGACTTCAAGAACTAATGTTG-------------------------------------------------------ATTATTATAGAAAAGTTAATTGGTCTTTA-TAAT----ATT--------CAT--ATCCA-T------ATTCATTTATAATTTTAAC----ATTA----------------------------------------------------------------------TA--------T----------------------------------------------------C------AT--------------------------------------------ATTAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAAGATGAACACGT
dm3 chr3L:19808312-19808570 - GAAAACTACGACGAGGAGAAGTCAGCTA---GAACCTCGGATGAAAATCGCAAGTACG---------------------------GAAAAC----------------------------------ATTATTCAGGC-----------TTAACTAATTCC--------------A-------------------------------------------------------------TATCCATTTATTCGACTTCAAGA-CTAATAATG-------------------------------------------------------ATTATTTCGGAAAAGTTAATTGGTCTTTT-CAATCA-GATT--------CCTGCATCCA-T------ATGCATTTATAATTTTAAC----GTTA----------------------------------------------------------------------TA--------T----------------------------------------------------C------ATTT-----------ATTT--------T-----------------AATTAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAAGATGAACACGT
droEre2 scaffold_4784:19567596-19567889 - GACAACTACGACGAGGAGAAGTCGGCCA---GAACCTCGGATGAAAATCGCAAGTACG---------------------------GAAAAC----------------------------------T-TTTTCACAA-----------TTAACGTATTCC--------------A-------------------------------------------------------------TATCCATTTATCCGACTTAAAGAACT-----------------------TCGAATTTTTTCGAGATGTTGGTTCAAAAAGAACAAATGATTATT-TGGATAAGTTAATTAGTCTTTA-TAATCA-GATA--------TCTGCATGCA-TACTCGTATGTATTTCAAATTTTACC----ATTA----------------------------------------------------------------------TA--------T----------------------------------------------------C------AT-------------ATAT--------C-----------------ATTTAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGAGACAAGATGAACACGT
droYak3 3L:20754380-20754674 + GAAAACTACGACGAGGAGAAGTCGGCAA---AAACTTCGGATGAGAATCGCAAGTACG---------------------------GAAAAT----------------------------------ATT-TTAAAAC-----------TTAACGTATTCC--------------A-------------------------------------------------------------TATCCATTTATCCGGCTTGGAGAACT-----------------------TTGAATTGCTTTAAAACGTTGATTCAAAAAGAAAAAATGATTATT-TGCAGAAGTTAATAAGTCTTTA-TAATCAAGATA--------TCTGCATGCA-TATTCGTATGTATTTTATATTTTACC----ATTA----------------------------------------------------------------------TA--------T----------------------------------------------------C------AT-------------ATTT--------C-----------------ATTCAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGAGACAAGATGAACACGT
droEug1 scf7180000409466:5117523-5117741 + AAATTATTTTTTAA------------------------------------------------------------------------------------------------------------------------AT-----------TTAAATACTTCCCAAAAAATTTGATCATATATCATTTACT--------------------------------------------------------------------------------------------------------GCTTTTAAATGTTAACATAT---TTATAAATGTTT----------------------TCTT-AAAT---------------CCTGTAACCAGT------ATTTATTTTTTATTCCTAT----ATTTAAGAGAAAATAAATT---------AAAAC---------------------------------------------------------------------------------------------------------TTTTC-TT-------------CTCC--------C-----------------TTTTAGGCAGAATCACAGTGAGATCGAGAAGCGACGGCGGGACAAGATGAACACAT
droBia1 scf7180000302193:5856819-5856931 + GAAACTTTCGACGAGGAAAAGTCCGCGA---GAACCTCAGATGAAAACCGCAAGTAAG---------------------------GAAAAA----------------------------------T--ATTCTCAC-----------CAAAGTATATT---------------T-------------------------------------------------------------CATGTGTTTATTGGAATTTAAAAGTTAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415254:756341-756438 + TCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA--------TATATATTCA-T------AT------------------------------------------------------------------------------------------------A--------T----------------------------------------------------C------AATTATCATTTTA-ATCCT--------C-----------------CCATAGGCAAAATCACAGCGAGATCGAGAAAAGGCGGCGGGACAAGATGAATACGT
droEle1 scf7180000491193:4092052-4092201 - GAGACTTTCGACGGGGAGAAGTCCGCGA---GAACCTCAGATGAAAATCGCAAGTACG---------------------------TAAAT-----------------------------------------------------------------------------------------GATTCACAGCCTACATACATAGTTGGTTTAAAATCATGTT----------------------------------------------------------------------------------------------------------TGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTTAA-------TTTGT----TT--------TTATTAATTTATTGAGTTTTT--------------------------------------------TAAACAAAT
droRho1 scf7180000773422:112872-113085 + ATTAC-------AAAGAAAGATAAATTA---AAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATT----------------TATTCAATTACCTAAATAAAAAAATTAATATTGAACTTGCATTATAGTCCTGTGTTGATCTGGGATACCAATTTAAA---------------------------------------------------------------ACA--------------------------ACGATTTTTATTTATAAAAAAATTAATC---------AAAAA---------------------------------------------------------------------------------------------------------TATTTGA------------TCTCCT--------T-----------------TTTTAGACAGAACCACAGTGAAATAGAGAAGCGACGGCGGGATAAGATGAACACGT
droFic1 scf7180000454113:2489233-2489308 + ATTTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------AATA-------T----TTTCCT--------A-----------------TTACAGGCAAAACCACAGCGAGATCGAGAAGCGTCGAAGGGATAAGATGAATACAT
droKik1 scf7180000302391:667101-667266 + GAAGCATTCGACGAGGAGAAATCGGCCA---GGACTTCAGATGAAAATCGCAAGTAGG---------------------------AAAACT----------------------------------------------------------------------------------------C--------------------------------------------------------------------------AAGGA-----------------------------------------------------------------------------------------------------------------------------------------------------TTCTC-CATGAT----------------------------------------------------TTATCTAAAAAATAA-----------------------------------------------------TTCATAA-------AATG-------C----A--TAA--------A-----------------TTCCAGGCAGAATCACAGCGAGATCGAGAAGCGACGTCGGGACAAGATGAACACGT
droAna3 scaffold_13337:19439707-19440036 + GAAACGTTCGACGAGGAGAAATCTGCGA---GGACTTCGGATGAAAATCGAAAGTAAG---------------------------AATGGCTCTAGCGGCACAAAAATTTCCGCAATTAAAAAACACAATTCATGTTTATAATACAATTAAAAATAATTAAAAAAATTAGAA--ATAATTATTTAAT--------------------------------------------------------------------------------------------------------TTTTCTAAATTTGAAAAAAT---TTAAAT--------T-AGTAGTAGAT----AGTTTTAATAGATTA-GATTAATTAAGTAATT-----------------TACCTAATAATTTTTA----GTGTAATA---ATATAACT---------AAATC---------------------------------------------------------------------------------------------------------TCATC-AT----------T-AACTT--------G-----------------TGGCAGACAAAATCACAGTGAGATCGAGAAACGGCGTCGGGATAAGATGAATACTT
droBip1 scf7180000396360:635430-635621 + GAAACGTTCGACGAGGAGAAATCTGCGA---GAACTTCGGATGAAAATCGAAAGTAGG---------------------------AAAAAT----------------------------------------------------------------------------------------A-------------------AATTAA----------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAATCTAAT---------ATAAA---------CATCCTATACTGTACAT------------------------------------------------------------------------------C------ATACATCCTTTTA-ACTAACCTTTTCTTTATCG------------CGACAGACAAAATCACAGTGAAATCGAGAAACGGCGGCGGGATAAGATGAATACTT
dp5 XR_group6:5930201-5930362 - GA---CTTTGATGATGAGAAACCGGCCAATCGTACTTCGGATGAGAACCGCAAGTATG---------------------------GAAAAT----------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAT----GCGTGTGGTAGAATCGATA---------ATAAC---------------------------------------------------------------------------------------------------------TATTCCA-------TTTGT----AT--------C-----------------TGCTAGACAAAACCACAGTGAGATCGAGAAGCGGCGCAGGGACAAGATGAACAAGT
droPer2 scaffold_47:430268-430429 - GA---CTTTGATGATGAGAAACCGGCCAATCGTACTTCGGATGAGAACCGCAAGTATG---------------------------GAAAAT----------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAT----GCGTGTGGTAGAATCGATA---------ATAAC---------------------------------------------------------------------------------------------------------TATTCCA-------TTTGT----AT--------C-----------------TGCTAGACAAAACCACAGTGAGATCGAGAAGCGGCGCAGGGACAAGATGAACAAGT
droWil2 scf2_1100000004511:2775854-2776178 + GATACATATGATGAGGAGAAATCAGCTC---GCACCTCGGATGAAAATCGCAAGTATGTGTATAATTAAGTAATAGTTGTGTAGGAACGCCTC------------------------------------ATCAAAC-----------T-------------------------------GTTTCATAGTCTTCATAAA-------ATTAAAATCAACTTTAATAAAATAATTTTTTAAGTTTTTAATGTCCTTTTAGTGTAATTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATTATTTACCCCAAGTCCCATTTGTT--------------------------------ACGTTATGATACGCCCCAAAAGTATGCAATAGTTTTGCTAATATTATTAATTATTTACAA----------------------------T--------A-----------------TTCAAGACAAAATCACAGTGAGATTGAGAAACGGCGACGGGATAAAATGAACACCT
droVir3 scaffold_13049:22917770-22917928 + GAGCCATTTGATGAGGAAAAATCGATGC---GCA---CAGATGAAAATCGGAAGTAAA---------------------------GTATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAT----CTATATAAAACAATATATA---------TTAAC----------------------------------------------------------------------------------------------------------ATAGCA-------GTT--TTTTTG--------G-----------------TTGTAGGCAAAATCACAGTGAGATTGAGAAAAGGCGTCGCGATAAGATGAACACCT
droMoj3 scaffold_6680:17533054-17533216 + GACACATACGATGATGAGAAATCAGCGC---GCACCTCAGATGAAAATCGCAAGTAGG---------------------------ACAAAT----------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-------------------------------------------------------------------------------------------ATGCCCCTTAAATGAG------------------------------ACTATATTAATATGA-------TTTGTATTTCC--------C-----------------TTTTAGGCAAAATCACAGTGAAATTGAGAAGCGGCGACGCGATAAGATGAATACAT
droGri2 scaffold_15110:18190531-18190583 + -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACAGAATCACAGTGAGATTGAGAAAAGGCGACGCGATAAGATGAACACAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAAAACTACGACGATGAGAAGTCAGCCA---GAACCTCCGATGAAAATCGCAAGTAAT---------------------------GAAAAA----------------------------------ATTTTTAAAAC-----------TTAACTAAATCC--------------A-------------------------------------------------------------TATCCATTTATTCGACTTCAAGAACTAATGTTG-------------------------------------------------------ATTATTTTAGAAAAGTTAATTGGTCTTTA-AAATCA-GATT--------CCTGCATCCA-T------ATTCATTTATAATTTTAAC----ATTA----------------------------------------------------------------------TA--------T----------------------------------------------------C------AT--------------------------------------------ATTAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAAGATGAACACGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............TGAGAAGTCAGCCA---GAACCTCCGATGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCGGCGTCGGGACAAGATGAAC....2611.00101000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGAAGCGGCGTCGGGACA............2111.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................TTTAGAAAAGTTAATTGGTC......................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCACAGCGAGATCGAGAAGCGGC.....................2511.00101000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGCGTCGGGAT.............1640.25100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGCGTCGGGC..............1560.17100000000001000000
droSec2
GAAAACTACGACGATGAAAAGTCAGCCA---GAACCTCCGATGAAAATCGCAAGTAAG---------------------------GAAAAC----------------------------------ATTTTTCAAAC-----------TTAACTAAATCC--------------A-------------------------------------------------------------TATCCATTTATTCGACTTCAAGAACTAATGTTG-------------------------------------------------------ATTATTATAGAAAAGTTAATTGGTCTTTA-TAAT----ATT--------CAT--ATCCA-T------ATTCATTTATAATTTTAAC----ATTA----------------------------------------------------------------------TA--------T----------------------------------------------------C------AT--------------------------------------------ATTAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAAGATGAACACGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATCGAGAAGCGGCGTCG.................2011.0011000
dm3
GAAAACTACGACGAGGAGAAGTCAGCTA---GAACCTCGGATGAAAATCGCAAGTACG---------------------------GAAAAC----------------------------------ATTATTCAGGC-----------TTAACTAATTCC--------------A-------------------------------------------------------------TATCCATTTATTCGACTTCAAGA-CTAATAATG-------------------------------------------------------ATTATTTCGGAAAAGTTAATTGGTCTTTT-CAATCA-GATT--------CCTGCATCCA-T------ATGCATTTATAATTTTAAC----GTTA----------------------------------------------------------------------TA--------T----------------------------------------------------C------ATTT-----------ATTT--------T-----------------AATTAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGGGACAAGATGAACACGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................A---GAACCTCGGATGAAAATCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................A---GAACCTCGGATGAAAATCGCAAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGATCGAGAAGCGGCGTCGGGA..............2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AGCTA---GAACCTCGGATGAAAATCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............GAGAAGTCAGCTA---GAACCTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAATCACAGCGAGATCGAGA...........................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TACGACGAGGAGAAGTCAGCTA---GAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GGAGAAGTCAGCTA---GAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCACAGCGAGATCG..............................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AGAAGTCAGCTA---GAACCTCGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGTCGGGACAAGATGAACACG.2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCGAGATCGAGAAGCG.......................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGAGATCGAGAAGCGGC.....................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TCAGCTA---GAACCTCGGATGAAAATCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGTCGGGACAAGATGA......2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGCGTCGGGACAAGATG.......2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000000000
......TACGACGAGGAGAAGTCAGCTA---GA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGGCGTCGGGACAAGATGAA.....2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GTCAGCTA---GAACCTCGGATGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
..................AAGTCAGCTA---GAACCTCGGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGTCGGGACAAGATGAA.....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGAGATCGAGAAGC........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTCGGGACAAGATGAAC....2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................GA-CTAATAATG-------------------------------------------------------ATTATTTCGGAA...................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CTACGACGAGGAGAAGTCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGATCGAGAAGCGGCGT...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACTACGACGAGGAGAAGTCAGCTA---G..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
GAAAACTACGACGAGGAGAAGTCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGATCGAGAAGCGGCGTCGGGG..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGCGGCGTCGGGACA............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................AGTCAGCTA---GAACCTCGGATGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GCTA---GAACCTCGGATGAAAATCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AGAAGTCAGCTA---GAACCTCGGATGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TTTCGGAAAAGTTAATTGGTCTTT...................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................GTCAGCTA---GAACCTCGGATGAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GAAGTCAGCTA---GAACCTCGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGCGAGATCGAGAAGC........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGAGATCGAGAAGCGGCGT...................2311.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................GAAGTCAGCTA---GAACCTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGGGACAAGATGAACACG.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCGAGATCGAGAAGCGGCGTC..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................TT-CAATCA-GATT--------CCTGCAT.......................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AAGTCAGCTA---GAACCTCGGATGAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................A---GAACCTCGGATGAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................AAGTCAGCTA---GAACCTCGGATGAAAATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCACAGCGAGATCGAGAAGCGG......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGAGATCGAGAAGCGGC.....................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.......ACGACGAGGAGAAGTCAGCTA---GA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
................................AACCTCGGATGAAAATCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................TA---GAACCTCGGATGAAAATCGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CTA---GAACCTCGGATGAAAATCGCAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CGACGAGGAGAAGTCAGCTA---GAACC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGATCGAGAAGCGGCGTCGGGA..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGATCGAGAAGCGGCG....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGCGGCGTCGGGAC.............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................CAGCTA---GAACCTCGGATGAAAAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCGTCGGGACAAGAT........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GACAACTACGACGAGGAGAAGTCGGCCA---GAACCTCGGATGAAAATCGCAAGTACG---------------------------GAAAAC----------------------------------T-TTTTCACAA-----------TTAACGTATTCC--------------A-------------------------------------------------------------TATCCATTTATCCGACTTAAAGAACT-----------------------TCGAATTTTTTCGAGATGTTGGTTCAAAAAGAACAAATGATTATT-TGGATAAGTTAATTAGTCTTTA-TAATCA-GATA--------TCTGCATGCA-TACTCGTATGTATTTCAAATTTTACC----ATTA----------------------------------------------------------------------TA--------T----------------------------------------------------C------AT-------------ATAT--------C-----------------ATTTAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGAGACAAGATGAACACGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGCGGCGTCGAGACAAGATG.......2511.0011000000
...................AGTCGGCCA---GAACCTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
GACAACTACGACGAGGAGAAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000100
droYak3
GAAAACTACGACGAGGAGAAGTCGGCAA---AAACTTCGGATGAGAATCGCAAGTACG---------------------------GAAAAT----------------------------------ATT-TTAAAAC-----------TTAACGTATTCC--------------A-------------------------------------------------------------TATCCATTTATCCGGCTTGGAGAACT-----------------------TTGAATTGCTTTAAAACGTTGATTCAAAAAGAAAAAATGATTATT-TGCAGAAGTTAATAAGTCTTTA-TAATCAAGATA--------TCTGCATGCA-TATTCGTATGTATTTTATATTTTACC----ATTA----------------------------------------------------------------------TA--------T----------------------------------------------------C------AT-------------ATTT--------C-----------------ATTCAGGCAAAATCACAGCGAGATCGAGAAGCGGCGTCGAGACAAGATGAACACGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGAGATCGAGAAGCGGC.....................2011.00101000000000
droEug1
AAATTATTTTTTAA------------------------------------------------------------------------------------------------------------------------AT-----------TTAAATACTTCCCAAAAAATTTGATCATATATCATTTACT--------------------------------------------------------------------------------------------------------GCTTTTAAATGTTAACATAT---TTATAAATGTTT----------------------TCTT-AAAT---------------CCTGTAACCAGT------ATTTATTTTTTATTCCTAT----ATTTAAGAGAAAATAAATT---------AAAAC---------------------------------------------------------------------------------------------------------TTTTC-TT-------------CTCC--------C-----------------TTTTAGGCAGAATCACAGTGAGATCGAGAAGCGACGGCGGGACAAGATGAACACATSizeHit CountTotal NormTotal
No Reads
droBia1
GAAACTTTCGACGAGGAAAAGTCCGCGA---GAACCTCAGATGAAAACCGCAAGTAAG---------------------------GAAAAA----------------------------------T--ATTCTCAC-----------CAAAGTATATT---------------T-------------------------------------------------------------CATGTGTTTATTGGAATTTAAAAGTTAATAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA--------TATATATTCA-T------AT------------------------------------------------------------------------------------------------A--------T----------------------------------------------------C------AATTATCATTTTA-ATCCT--------C-----------------CCATAGGCAAAATCACAGCGAGATCGAGAAAAGGCGGCGGGACAAGATGAATACGTSizeHit CountTotal NormTotal
No Reads
droEle1
GAGACTTTCGACGGGGAGAAGTCCGCGA---GAACCTCAGATGAAAATCGCAAGTACG---------------------------TAAAT-----------------------------------------------------------------------------------------GATTCACAGCCTACATACATAGTTGGTTTAAAATCATGTT----------------------------------------------------------------------------------------------------------TGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATTTAA-------TTTGT----TT--------TTATTAATTTATTGAGTTTTT--------------------------------------------TAAACAAATSizeHit CountTotal NormTotal
No Reads
droRho1
ATTAC-------AAAGAAAGATAAATTA---AAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAATT----------------TATTCAATTACCTAAATAAAAAAATTAATATTGAACTTGCATTATAGTCCTGTGTTGATCTGGGATACCAATTTAAA---------------------------------------------------------------ACA--------------------------ACGATTTTTATTTATAAAAAAATTAATC---------AAAAA---------------------------------------------------------------------------------------------------------TATTTGA------------TCTCCT--------T-----------------TTTTAGACAGAACCACAGTGAAATAGAGAAGCGACGGCGGGATAAGATGAACACGTSizeHit CountTotal NormTotal
No Reads
droFic1
ATTTAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------AATA-------T----TTTCCT--------A-----------------TTACAGGCAAAACCACAGCGAGATCGAGAAGCGTCGAAGGGATAAGATGAATACATSizeHit CountTotal NormTotal
No Reads
droKik1
GAAGCATTCGACGAGGAGAAATCGGCCA---GGACTTCAGATGAAAATCGCAAGTAGG---------------------------AAAACT----------------------------------------------------------------------------------------C--------------------------------------------------------------------------AAGGA-----------------------------------------------------------------------------------------------------------------------------------------------------TTCTC-CATGAT----------------------------------------------------TTATCTAAAAAATAA-----------------------------------------------------TTCATAA-------AATG-------C----A--TAA--------A-----------------TTCCAGGCAGAATCACAGCGAGATCGAGAAGCGACGTCGGGACAAGATGAACACGTSizeHit CountTotal NormTotal
No Reads
droAna3
GAAACGTTCGACGAGGAGAAATCTGCGA---GGACTTCGGATGAAAATCGAAAGTAAG---------------------------AATGGCTCTAGCGGCACAAAAATTTCCGCAATTAAAAAACACAATTCATGTTTATAATACAATTAAAAATAATTAAAAAAATTAGAA--ATAATTATTTAAT--------------------------------------------------------------------------------------------------------TTTTCTAAATTTGAAAAAAT---TTAAAT--------T-AGTAGTAGAT----AGTTTTAATAGATTA-GATTAATTAAGTAATT-----------------TACCTAATAATTTTTA----GTGTAATA---ATATAACT---------AAATC---------------------------------------------------------------------------------------------------------TCATC-AT----------T-AACTT--------G-----------------TGGCAGACAAAATCACAGTGAGATCGAGAAACGGCGTCGGGATAAGATGAATACTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCGTCGGGATAAGATGAAT....2311.001000010
droBip1
GAAACGTTCGACGAGGAGAAATCTGCGA---GAACTTCGGATGAAAATCGAAAGTAGG---------------------------AAAAAT----------------------------------------------------------------------------------------A-------------------AATTAA----------------------------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAAAATCTAAT---------ATAAA---------CATCCTATACTGTACAT------------------------------------------------------------------------------C------ATACATCCTTTTA-ACTAACCTTTTCTTTATCG------------CGACAGACAAAATCACAGTGAAATCGAGAAACGGCGGCGGGATAAGATGAATACTTSizeHit CountTotal NormTotal
No Reads
dp5
GA---CTTTGATGATGAGAAACCGGCCAATCGTACTTCGGATGAGAACCGCAAGTATG---------------------------GAAAAT----------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAT----GCGTGTGGTAGAATCGATA---------ATAAC---------------------------------------------------------------------------------------------------------TATTCCA-------TTTGT----AT--------C-----------------TGCTAGACAAAACCACAGTGAGATCGAGAAGCGGCGCAGGGACAAGATGAACAAGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................CGGCCAATCGTACTTCGGATGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.A---CTTTGATGATGAGAAACCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
GA---CTTTGATGATGAGAAACCGGCCAATCGTACTTCGGATGAGAACCGCAAGTATG---------------------------GAAAAT----------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAT----GCGTGTGGTAGAATCGATA---------ATAAC---------------------------------------------------------------------------------------------------------TATTCCA-------TTTGT----AT--------C-----------------TGCTAGACAAAACCACAGTGAGATCGAGAAGCGGCGCAGGGACAAGATGAACAAGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCA-------TTTGT----AT--------C-----------------TGCTAGAC................................................2111.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGAAGCGGCGCAGGGAC.............2011.001010000
droWil2
GATACATATGATGAGGAGAAATCAGCTC---GCACCTCGGATGAAAATCGCAAGTATGTGTATAATTAAGTAATAGTTGTGTAGGAACGCCTC------------------------------------ATCAAAC-----------T-------------------------------GTTTCATAGTCTTCATAAA-------ATTAAAATCAACTTTAATAAAATAATTTTTTAAGTTTTTAATGTCCTTTTAGTGTAATTAT----------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATTATTTACCCCAAGTCCCATTTGTT--------------------------------ACGTTATGATACGCCCCAAAAGTATGCAATAGTTTTGCTAATATTATTAATTATTTACAA----------------------------T--------A-----------------TTCAAGACAAAATCACAGTGAGATTGAGAAACGGCGACGGGATAAAATGAACACCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
GATACATATGATGAGGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCACAGTGAGATTGAGAAACGGC.....................2611.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTGAGATTGAGAAACGGCGACGGG...............2811.00100100
droVir3
GAGCCATTTGATGAGGAAAAATCGATGC---GCA---CAGATGAAAATCGGAAGTAAA---------------------------GTATAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAT----CTATATAAAACAATATATA---------TTAAC----------------------------------------------------------------------------------------------------------ATAGCA-------GTT--TTTTTG--------G-----------------TTGTAGGCAAAATCACAGTGAGATTGAGAAAAGGCGTCGCGATAAGATGAACACCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATCACAGTGAGATTGAGAAAAGGC.....................2711.001000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAGAAAAGGCGTCGCGA..............2111.001000000000000000000000100000000000000000000000000000000000000000
................AAAAATCGATGC---GCA---CAGATGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
GACACATACGATGATGAGAAATCAGCGC---GCACCTCAGATGAAAATCGCAAGTAGG---------------------------ACAAAT----------------------------------------------------------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AC-------------------------------------------------------------------------------------------ATGCCCCTTAAATGAG------------------------------ACTATATTAATATGA-------TTTGTATTTCC--------C-----------------TTTTAGGCAAAATCACAGTGAAATTGAGAAGCGGCGACGCGATAAGATGAATACATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAATTGAGAAGCGGCGACGC................2211.001100000
......................CAGCGC---GCACCTCAGATGAAAATCGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100
droGri2
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGACAGAATCACAGTGAGATTGAGAAAAGGCGACGCGATAAGATGAACACATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 12:39 PM