ID:

dsi_10014

Coordinate:

3l:16300602-16300751 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_16300752_16300985_+]; exon [3l_16300752_16300985_+]; intron [3l_16300015_16300751_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TAGGGATCTTCGTTTGTGGATTTGTTGTCTTCGGAACTTATCGAAGATATAAGCTTTCTCTTCCATTTCTTCTGAGCTCTTTGAGTTTTTCTCCTGTTTTTGATTTTGTGCCAAATGCGAATTCGGAGTCTCCGCTTGGAGCTGCTCTCGTTGCTTGTTATCCCTGTCGTTTTCCTGATCCCTTCTGTTCCATTGTTCAGATGCGTTCACGGATTTGGATCCGCTAGGCACAGGACGCACCAGGCCGTAT ************************************************((((...................((((.((((((((....((((....((((..((((...))))..))))...)))).....))))))))..)))).....))))..................((((..................))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	M024 male body
....................TTTGTTGTCTTCGGAACTTATCGAAGA...........................................................................................................................................................................................................	27	0	1	1.00	1	1	0	0	0	0
.......CTTCGTTTGTGTATTTGGTAT..............................................................................................................................................................................................................................	21	3	6	0.67	4	0	4	0	0	0
.....................TCGTTGTCTTCGGAAC.....................................................................................................................................................................................................................	16	1	5	0.20	1	0	0	1	0	0
...................................................................................................................................................................CTGTCGTATTCCGGATCGC....................................................................	19	3	8	0.13	1	0	0	0	1	0
...........GTTTTTGGAGTTGTTGTCATC..........................................................................................................................................................................................................................	21	3	11	0.09	1	0	1	0	0	0
..................................................................................................................................................................................................................................GGCTCAGGACGAACCTGGC.....	19	3	11	0.09	1	0	0	0	0	1
..............TGTGGATCTGTTGTCCT...........................................................................................................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0

Anti-sense strand reads

ATCCCTAGAAGCAAACACCTAAACAACAGAAGCCTTGAATAGCTTCTATATTCGAAAGAGAAGGTAAAGAAGACTCGAGAAACTCAAAAAGAGGACAAAAACTAAAACACGGTTTACGCTTAAGCCTCAGAGGCGAACCTCGACGAGAGCAACGAACAATAGGGACAGCAAAAGGACTAGGGAAGACAAGGTAACAAGTCTACGCAAGTGCCTAAACCTAGGCGATCCGTGTCCTGCGTGGTCCGGCATA ************************************************((((...................((((.((((((((....((((....((((..((((...))))..))))...)))).....))))))))..)))).....))))..................((((..................))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	O001 Testis	SRR618934 dsim w501 ovaries	M025 embryo	SRR902009 testis
.............................................................................AGCACCTCAAAAAGAAGACAAA.......................................................................................................................................................	22	3	8	0.25	2	0	2	0	0	0	0	0
......................................................................................................................................................................AGCAATAGCACTAGGGCAGAC...............................................................	21	3	4	0.25	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................CAAGTGCCTAAACGTA..............................	16	1	5	0.20	1	0	0	1	0	0	0	0
.............................................................................AGAAAATCAAAAAGAGGTC..........................................................................................................................................................	19	2	7	0.14	1	0	0	0	1	0	0	0
...........CAAACACAGAAACAACAGA............................................................................................................................................................................................................................	19	2	16	0.13	2	2	0	0	0	0	0	0
...................................................................................................................................GGCGAATCTCAACCAGAGC....................................................................................................	19	3	11	0.09	1	0	0	0	0	1	0	0
...........................................................................................................................................................................TAGGACTAGGGAAGAGTAG............................................................	19	3	20	0.05	1	0	0	0	0	0	1	0
..........................................................................................................................................................................AAAGGACGGGGGATGACAA.............................................................	19	3	20	0.05	1	0	0	0	0	0	0	1
.........................................................................................................................................................................................................ATGCACGTGCCTAAAC.................................	16	2	20	0.05	1	0	0	1	0	0	0	0

Generated: 04/24/2015 at 04:07 AM