ID:

dsi-mir-983

 Coordinate:

x:3957183-3957302 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

antisense_to_intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.9

Flybase annnotation

Antisense to intron [x_3957058_3957386_+]; utr3 [utr3_minus_9916]

No Repeatable elements found

-31.9

Flybase annnotation

Antisense to intron [x_3957058_3957386_+]; utr3 [utr3_minus_9916]

No Repeatable elements found

Sense Strand Reads

GAGTCGTCAACTCGGTGAGTGAATGTGAATGGCTTCTACTCTCTACTTCATTGCTTTGCATATGATATCTTGCAGTAATTTAGTAATACCTTTCGAACACATGATTTTCAGTCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCGGATGAGGAATTACTTGTGATGTACGATTCGAGCGTATTTATCTGTGAATGGC

******************************************************************...(((((((((((..(((((((((..(((((.(((((...........))))).)))))..)))))))))..)))))))))))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009

testis

 O001

Testis

 M024

male body		 M025

embryo

 SRR553485

Chicharo_3 day-old ovaries

 SRR618934

dsim w501 ovaries

 SRR553486

Makindu_3 day-old ovaries

 SRR553487

NRT_0-2 hours eggs

 M023

head

 SRR553488

RT_0-2 hours eggs

 O002

Head

 SRR902008

ovaries

 M053

female body

 GSM343915

embryo

 SRR1275483

Male prepupae		 SRR1275485

Male prepupae
......................................................................................................................TGAGTTCGTCAGGTATTATCT................................................................................. 21 0 1 6722.00 6722 5887 227 340 57 33 60 25 17 27 9 8 29 1 2 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCT................................................................................. 22 0 1 6446.00 6446 4161 397 1229 394 22 83 21 4 100 3 3 18 1 0 8 2
.....................................................................................................................ATGAGTTCGTCAGGTATTATC.................................................................................. 21 0 1 2808.00 2808 2181 108 353 63 5 62 4 3 25 0 1 1 0 1 1 0
.................................................................................AGTAATACCTTTCGAACACATG..................................................................................................................... 22 0 1 2195.00 2195 469 1069 43 3 174 39 193 101 2 68 16 1 9 8 0 0
.................................................................................AGTAATACCTTTCGAACACATGA.................................................................................................................... 23 0 1 1858.00 1858 765 694 28 26 123 27 92 43 2 25 17 4 7 5 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTAT................................................................................... 20 0 1 1737.00 1737 1704 21 4 0 0 1 3 1 0 0 1 1 0 0 1 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTA................................................................................ 22 0 1 1568.00 1568 1032 174 132 68 39 38 34 25 5 7 5 7 0 1 1 0
.................................................................................AGTAATACCTTTCGAACACA....................................................................................................................... 20 0 1 947.00 947 17 872 12 0 3 2 2 5 2 3 27 0 2 0 0 0
.................................................................................AGTAATACCTTTCGAACACAT...................................................................................................................... 21 0 1 893.00 893 137 660 27 6 13 3 8 8 9 4 16 1 1 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAT............................................................................... 23 1 1 399.00 399 360 0 9 2 0 19 3 1 1 1 0 2 0 1 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTA.................................................................................... 19 0 1 358.00 358 224 130 3 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATC.................................................................................. 20 0 1 269.00 269 153 63 31 5 1 7 3 0 4 0 1 0 0 1 0 0
.................................................................................AGTAATACCTTTCGAACAC........................................................................................................................ 19 0 1 238.00 238 6 228 1 0 0 0 2 0 0 0 1 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACA......................................................................................................................... 18 0 1 194.00 194 1 185 0 0 0 1 1 0 0 0 6 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAA............................................................................... 23 1 1 191.00 191 144 0 16 15 4 5 1 5 0 1 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTAT................................................................................... 19 0 1 165.00 165 139 23 0 0 0 2 0 1 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAAA.................................................................................................................. 25 2 1 136.00 136 32 0 10 6 34 4 12 29 0 8 0 0 0 1 0 0
......................................................................................................................TGAGTTCGTCAGGTATTA.................................................................................... 18 0 1 120.00 120 2 117 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTT................................................................................ 22 1 1 105.00 105 103 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCC................................................................................. 22 1 1 84.00 84 2 0 55 20 0 0 0 0 7 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAT................................................................................................................... 24 0 1 78.00 78 25 38 6 0 1 0 0 2 2 1 3 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGT.................................................................................................................... 23 1 1 75.00 75 61 0 10 1 0 2 0 1 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAA................................................................................................................... 24 1 1 72.00 72 53 0 3 2 5 1 4 2 0 2 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTT................................................................................ 23 1 1 72.00 72 60 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCA................................................................................. 22 1 1 56.00 56 49 0 5 0 0 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTA................................................................................ 23 0 1 52.00 52 26 1 9 1 1 3 3 5 0 1 0 2 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGGATTATCT................................................................................. 22 1 1 45.00 45 14 0 27 3 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAAA.............................................................................. 24 2 1 45.00 45 16 0 4 1 0 4 2 14 0 3 0 1 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTAA................................................................................... 20 1 1 38.00 38 36 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTT.................................................................................... 19 1 1 37.00 37 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATT..................................................................................... 18 0 1 33.00 33 2 24 3 1 0 3 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGAATTATCT................................................................................. 21 1 1 31.00 31 29 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAAAA................................................................................................................. 26 3 1 28.00 28 21 0 1 1 1 0 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATT.................................................................................. 21 1 1 27.00 27 25 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCA................................................................................. 21 1 1 26.00 26 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCG................................................................................. 22 1 1 24.00 24 0 0 16 6 0 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATA.................................................................................. 21 1 1 23.00 23 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGC.................................................................................................................... 23 1 1 23.00 23 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATAA................................................................................. 22 2 1 22.00 22 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGGATTATCT................................................................................. 21 1 1 22.00 22 18 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCC................................................................................. 21 1 1 19.00 19 0 0 11 5 0 0 0 0 3 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGGATTATC.................................................................................. 21 1 1 16.00 16 9 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGG.................................................................................................................... 23 1 1 16.00 16 0 0 12 4 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATT.............................................................................. 24 1 1 14.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATA.................................................................................. 20 1 1 13.00 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATA..................................................................................................................... 22 1 1 12.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGATTTCGTCAGGTATTATCT................................................................................. 21 1 1 11.00 11 7 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAAAA............................................................................. 25 3 1 10.00 10 1 0 0 0 1 2 1 3 0 1 0 0 1 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATT.................................................................................. 20 1 2 10.00 20 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGAATTATCT................................................................................. 22 1 1 10.00 10 3 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATAA................................................................................. 21 2 1 10.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTA....................................................................................... 15 0 1 10.00 10 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCG................................................................................. 21 1 1 9.00 9 3 0 3 2 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTTT............................................................................... 23 2 1 9.00 9 6 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTTT............................................................................... 24 2 1 9.00 9 5 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATTT................................................................................. 22 1 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATAA............................................................................. 25 3 1 9.00 9 8 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTTT................................................................................... 19 1 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAGTTCGTCAGGTATTATCT................................................................................. 20 0 1 9.00 9 4 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGAATTATC.................................................................................. 21 1 1 8.00 8 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGAATTAT................................................................................... 20 1 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTAATACCTTTCGAACACATGA.................................................................................................................... 22 0 1 8.00 8 0 6 0 0 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAC............................................................................... 23 1 1 8.00 8 2 0 3 1 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGCATTATCT................................................................................. 21 1 1 7.00 7 6 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAG............................................................................... 23 0 1 7.00 7 5 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTTCGTCAGGTATTATCT................................................................................. 18 0 1 6.00 6 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0
.....................................................................................ATACCTTTCGAACACATG..................................................................................................................... 18 0 1 6.00 6 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTTT................................................................................... 20 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTAATACCTTTCGAACACATG..................................................................................................................... 21 0 1 6.00 6 1 2 0 0 0 0 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGATTTCGTCAGGTATTATCT................................................................................. 22 1 1 6.00 6 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGCATTATCT................................................................................. 22 1 1 6.00 6 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTAA................................................................................... 19 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGGATTAT................................................................................... 20 1 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATATTTTTCGAACACATG..................................................................................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAAT.................................................................................................................. 25 1 1 5.00 5 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCAA................................................................................ 23 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGT........................................................................................ 15 0 1 5.00 5 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTA....................................................................................... 16 0 1 5.00 5 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATTTA................................................................................ 22 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATTT................................................................................. 21 1 2 4.50 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGCTCGTCAGGTATTATCT................................................................................. 22 1 1 4.00 4 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................ATTAATACCTTTCGAACACATGA.................................................................................................................... 23 1 1 4.00 4 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAATTCGTCAGGTATTATCT................................................................................. 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATA.............................................................................. 24 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGAATTATCTAT............................................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTAGCT................................................................................. 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAGAGTTCGTCAGGTATTATCT................................................................................. 22 1 1 4.00 4 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATAAA............................................................................ 26 3 1 4.00 4 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................CATGAGTTCGTCAGGTATTATC.................................................................................. 22 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATAT............................................................................. 25 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACAA...................................................................................................................... 21 1 1 4.00 4 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGTAA.................................................................................................................. 25 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTAGTCAGGTATTATCT................................................................................. 22 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCAAA............................................................................... 24 2 1 3.00 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CATGAGTTCGTCAGGTATTATCT................................................................................. 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCTAACACATG..................................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGAATTATCTA................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGCTCGTCAGGTATTATC.................................................................................. 21 1 1 3.00 3 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................ATAAGTTCGTCAGGTATTATCT................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AATACCTTTCGAACACATGA.................................................................................................................... 20 0 1 3.00 3 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGTTATTATCT................................................................................. 22 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTAGTTCGTCAGGTATTATCT................................................................................. 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATAA.................................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGCA................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTAATACCTTTCGAACACATGAT................................................................................................................... 23 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGGTCGTCAGGTATTATCT................................................................................. 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TAATACCTTTCGAACACATGA.................................................................................................................... 21 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTG................................................................................ 22 1 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGACA.................................................................................................................. 25 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATGT................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTGCGTCAGGTATTATCT................................................................................. 21 1 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................TACTTTCTACTTCATTCCTTTCC................................................................................................................................................................. 23 3 1 3.00 3 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTAA............................................................................... 24 1 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACTTTTCGAACACATG..................................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCAA................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTGTCT................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGCCAGGTATTATC.................................................................................. 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGGGTTCGTCAGGTATTATCT................................................................................. 22 1 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTTA................................................................................... 19 2 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATGAGTTCGTCAGGTATTATC.................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGATCACATG..................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AGTTCGTCAGGTATTATCT................................................................................. 19 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGTGTTCGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTAATATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGGTCGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAAC.................................................................................................................. 25 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTGTC.................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTACTATCT................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAAAAA............................................................................ 26 3 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTGAGGTATTATCT................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACATTTCGAACACATGA.................................................................................................................... 23 1 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................ATGACTTCGTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCATCAGGTATTATC.................................................................................. 21 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTAGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAA........................................................................................................................... 16 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATCAGTTCGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCTTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATAAA................................................................................................................... 24 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGCATTAT................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATATTCT................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTGTTATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGATCGTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CGAGTTCGTCAGGTATTATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAGTTCGTCAGGTATTATC.................................................................................. 19 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTTGAACACATTA.................................................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATATTTTTCGAACACATGT.................................................................................................................... 23 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGTA................................................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AGAGTTCGTCAGGTATTATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AATAATACCTTTCGAACACATGA.................................................................................................................... 23 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0
....................................................................................AATACCTTTCGAACACATGAAGT................................................................................................................. 23 2 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGGATTATCTA................................................................................ 22 1 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCAT................................................................................ 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGATTTCGTCAGGTATTAT................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATTA................................................................................. 21 2 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGTTATTATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CCTTTCGAACACATGA.................................................................................................................... 16 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCGGGTATTATCT................................................................................. 22 1 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGCATTATCTAT............................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAGAGTTCGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................GTAATACCTTTCGAACACAT...................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTAACT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGGTCGTCAGGTATTATCTA................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGCGTTCGTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATT..................................................................................... 17 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTC................................................................................ 23 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTTA................................................................................... 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAAGACCTTTCGAACACATGA.................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATT..................................................................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTTTT.............................................................................. 24 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCCAACACATGA.................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTAAA.................................................................................. 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAAGTTCGTCAGGTATTATCT................................................................................. 21 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTG................................................................................ 23 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGGCAGGTATTATCT................................................................................. 22 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTTGTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTAGTTCGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATAT.................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGCTCGTCAGGTATTATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAGTTCGTCAGGTATTATCTA................................................................................ 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATTAATACCTTTCGAACACATG..................................................................................................................... 22 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGCTATTATCT................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGCTATTATCTA................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AATACCTTTCGAACACATG..................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGGAGTTCGTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATAA.................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGATT.................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................ATACCTTTCGAACACATGA.................................................................................................................... 19 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................ATGAGTTCGCCAGGTATTATCT................................................................................. 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAG................................................................................................................... 24 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGTAG.................................................................................................................. 25 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTAATACCTTTCGAACACATGA.................................................................................................................... 23 1 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTGT................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTAAA.............................................................................. 25 2 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGATA.................................................................................................................. 25 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAC................................................................................................................... 24 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACAAAA.................................................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTTA............................................................................... 23 2 2 1.50 3 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGCGTTCGTCAGGTATTATC.................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTGATACCTTTCGAACACATGA.................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAAAACCTTTCGAACACATGT.................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATCATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATTC................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAAAACATG..................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................TAAGTTCGTCAGGTATTATC.................................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAAGTATTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAGTACCTTTCGAACACA....................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCATGTATTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTTGTCAGGTATTATCTAT............................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGGAGTTCGTCAGGTATT..................................................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATTAA............................................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTCGA.............................................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCAT................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTTA............................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATAAGTTCGTCAGGTATTATC.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTATTACCTTTCGAACACATGA.................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................AAGCAATACCTTTCGAACACATG..................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCAAACACATGA.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................TTTTCAGTCATTCATGAGTTCGTCAGG......................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTTTCT................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATAT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATTA............................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTG.................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCGTCAGGTATTATCT................................................................................. 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGATATTATA.................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTCCGTCAGGTATTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGGGTTCGTCAGGTATTAT................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCATCAGGTATTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCCGGTCTTATCTAA............................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................TAATACCTTTCGAACACATGAT................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGAATTAT................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTACTACCTTTCGAACACATG..................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................ATGATTTCGTCAGGTATTATC.................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGGGTTCGTCAGGTATTATCTT................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTTGTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CGAGTTCGTCAGGTATTATC.................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAGTTCGTCAGGTATTATCTT................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTAGTTCGTCAGGTATTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACATATGAAA.................................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACATTTCGAACACATG..................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGCGTTCGTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTTTC.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGCCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGGA................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATGT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGGGTTCGTCAGGTATTATCTAT............................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCGTCAGGTATTATCTA................................................................................ 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTAGTTCGTCAGGTATTAT................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGATATTAT................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGGAATACCTTTCGAACACATGT.................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTGGTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATCAT................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGGAATACCTTTCGAACACATGAA................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGTTATTATCTA................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGGGTTCGTCAGGTATTATCTA................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTAT............................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTCTTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGATTTCGTCAGGTATTATCTAA............................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCACGGATTATCT................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................TGAGTACGTCAGGTATTATCTA................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGCAATACCTTTCGAACACATGA.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATTAA................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACTTTTCGAACACATGAC................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGATCGTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTAGTTCGTCAGGTATTATCTAT............................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTCT................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCTTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTGAGTTCGTCAGGTATTATCA................................................................................. 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCGGGTATTATCTA................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTACGTCAGGTAGTATCT................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CGGAGTAATACCTTTCGAACACATG..................................................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................ACTAATACCTTTCGAACACATG..................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATG.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAGT.............................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TCAGTTCGTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCTAACACAT...................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGATTTCGTCAGGTATTA.................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTAAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGGCAGGTATTATCTAT............................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCCA................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTAATACCTTTCGAACACATGAAAA................................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTTCGTCAGGTATTATCTAT............................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGCATTATC.................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCATCAGGTATTATCTA................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTGAGGTATTATC.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGGGTTCGTCAGGTATTATC.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGACTA................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGAATTATCTT................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAAAAT................................................................................................................ 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AAGGAGTAATACCTTTCGAACACATG..................................................................................................................... 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTTGAACACATGAAA.................................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACAAA..................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGCTCGTCAGGTATTATCC................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGAATTA.................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTACT.............................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTAGTCAGGTATTAT................................................................................... 20 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ACCTTTCGAACACATGA.................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGGCAGGTATTATC.................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCGAA............................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TGTAATACCTTTCGAACACATG..................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGGAGTTCGTCAGGTATTAT................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GGAGTTCGTCAGGTATTATCTA................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTCAGCAGTTGAGCCACTCACTTACACTTACCGAAGATGAGAGATGAAGTAACGAAACGTATACTATAGAACGTCATTAAATCATTATGGAAAGCTTGTGTACTAAAAGTCAGTAAGTACTCAAGCAGTCCATAATAGATCAATAACATTTGTAAGTTGAGCGACCGCCTACTCCTTAATGAACACTACATGCTAAGCTCGCATAAATAGACACTTACCG

******************************************************************...(((((((((((..(((((((((..(((((.(((((...........))))).)))))..)))))))))..)))))))))))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023

head

 SRR553487

NRT_0-2 hours eggs

 GSM343915

embryo

 M024

male body		 SRR553488

RT_0-2 hours eggs

 SRR618934

dsim w501 ovaries

 SRR902008

ovaries
......................................................................................................................ACTCAAGCAGTCCATAATAGA................................................................................. 21 0 1 7.00 7 4 2 0 1 0 0 0
.................................................................................TCATTATGGAAAGCTTGTG........................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................TCATTATGGAAAGCTTGTGT....................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................AAAAATCATTATGGAAAGCTTGT......................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
...............................CGAAGATGAGAGATGAAG........................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0
......................................................................................................................ACTCAGGCAGTCCATAATAGA................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................TAAATCATTATGGAAAGCTTGT......................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0
.......................GCACTTACCGAAGATGATAGATGAAGT.......................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 0 0 0 1
.........................................................AGTATACTATAGAACGTAATT.............................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0
......................................GAGAGATGAAGTAGTGAGACGT................................................................................................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0 0
.........................................GGATGAAGTAAGGAAACGT................................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................................CTCAAGCAGTCCAGAAC.................................................................................... 17 2 6 0.17 1 0 1 0 0 0 0 0
........................................GGGATGAAGTAAGGAAAGGT................................................................................................................................................................ 20 3 16 0.06 1 0 0 1 0 0 0 0

Sense Strand Reads

GAGTCGTCAACTCGGTGAGTGAATGTGAATGGCTTCTACTCTCTACTTCATTGCTTTGCATATGATATCTTGCAGTAATTTAGTAATACCTTTCGAACACATGATTTTCAGTCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAACTCGCTGGCGGATGAGGAATTACTTGTGATGTACGATTCGAGCGTATTTATCTGTGAATGGC

******************************************************************...(((((((((((..(((((((((..(((((.(((((...........))))).)))))..)))))))))..)))))))))))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009

testis

 O001

Testis

 M024

male body		 M025

embryo

 SRR553485

Chicharo_3 day-old ovaries

 SRR618934

dsim w501 ovaries

 SRR553486

Makindu_3 day-old ovaries

 SRR553487

NRT_0-2 hours eggs

 M023

head

 SRR553488

RT_0-2 hours eggs

 O002

Head

 SRR902008

ovaries

 M053

female body

 GSM343915

embryo

 SRR1275483

Male prepupae		 SRR1275485

Male prepupae
......................................................................................................................TGAGTTCGTCAGGTATTATCT................................................................................. 21 0 1 6722.00 6722 5887 227 340 57 33 60 25 17 27 9 8 29 1 2 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCT................................................................................. 22 0 1 6446.00 6446 4161 397 1229 394 22 83 21 4 100 3 3 18 1 0 8 2
.....................................................................................................................ATGAGTTCGTCAGGTATTATC.................................................................................. 21 0 1 2808.00 2808 2181 108 353 63 5 62 4 3 25 0 1 1 0 1 1 0
.................................................................................AGTAATACCTTTCGAACACATG..................................................................................................................... 22 0 1 2195.00 2195 469 1069 43 3 174 39 193 101 2 68 16 1 9 8 0 0
.................................................................................AGTAATACCTTTCGAACACATGA.................................................................................................................... 23 0 1 1858.00 1858 765 694 28 26 123 27 92 43 2 25 17 4 7 5 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTAT................................................................................... 20 0 1 1737.00 1737 1704 21 4 0 0 1 3 1 0 0 1 1 0 0 1 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTA................................................................................ 22 0 1 1568.00 1568 1032 174 132 68 39 38 34 25 5 7 5 7 0 1 1 0
.................................................................................AGTAATACCTTTCGAACACA....................................................................................................................... 20 0 1 947.00 947 17 872 12 0 3 2 2 5 2 3 27 0 2 0 0 0
.................................................................................AGTAATACCTTTCGAACACAT...................................................................................................................... 21 0 1 893.00 893 137 660 27 6 13 3 8 8 9 4 16 1 1 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAT............................................................................... 23 1 1 399.00 399 360 0 9 2 0 19 3 1 1 1 0 2 0 1 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTA.................................................................................... 19 0 1 358.00 358 224 130 3 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATC.................................................................................. 20 0 1 269.00 269 153 63 31 5 1 7 3 0 4 0 1 0 0 1 0 0
.................................................................................AGTAATACCTTTCGAACAC........................................................................................................................ 19 0 1 238.00 238 6 228 1 0 0 0 2 0 0 0 1 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACA......................................................................................................................... 18 0 1 194.00 194 1 185 0 0 0 1 1 0 0 0 6 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAA............................................................................... 23 1 1 191.00 191 144 0 16 15 4 5 1 5 0 1 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTAT................................................................................... 19 0 1 165.00 165 139 23 0 0 0 2 0 1 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAAA.................................................................................................................. 25 2 1 136.00 136 32 0 10 6 34 4 12 29 0 8 0 0 0 1 0 0
......................................................................................................................TGAGTTCGTCAGGTATTA.................................................................................... 18 0 1 120.00 120 2 117 0 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTT................................................................................ 22 1 1 105.00 105 103 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCC................................................................................. 22 1 1 84.00 84 2 0 55 20 0 0 0 0 7 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAT................................................................................................................... 24 0 1 78.00 78 25 38 6 0 1 0 0 2 2 1 3 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGT.................................................................................................................... 23 1 1 75.00 75 61 0 10 1 0 2 0 1 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAA................................................................................................................... 24 1 1 72.00 72 53 0 3 2 5 1 4 2 0 2 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTT................................................................................ 23 1 1 72.00 72 60 0 12 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCA................................................................................. 22 1 1 56.00 56 49 0 5 0 0 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTA................................................................................ 23 0 1 52.00 52 26 1 9 1 1 3 3 5 0 1 0 2 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGGATTATCT................................................................................. 22 1 1 45.00 45 14 0 27 3 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAAA.............................................................................. 24 2 1 45.00 45 16 0 4 1 0 4 2 14 0 3 0 1 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTAA................................................................................... 20 1 1 38.00 38 36 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTT.................................................................................... 19 1 1 37.00 37 37 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATT..................................................................................... 18 0 1 33.00 33 2 24 3 1 0 3 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGAATTATCT................................................................................. 21 1 1 31.00 31 29 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAAAA................................................................................................................. 26 3 1 28.00 28 21 0 1 1 1 0 2 2 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATT.................................................................................. 21 1 1 27.00 27 25 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCA................................................................................. 21 1 1 26.00 26 26 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCG................................................................................. 22 1 1 24.00 24 0 0 16 6 0 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATA.................................................................................. 21 1 1 23.00 23 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGC.................................................................................................................... 23 1 1 23.00 23 23 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATAA................................................................................. 22 2 1 22.00 22 22 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGGATTATCT................................................................................. 21 1 1 22.00 22 18 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCC................................................................................. 21 1 1 19.00 19 0 0 11 5 0 0 0 0 3 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGGATTATC.................................................................................. 21 1 1 16.00 16 9 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGG.................................................................................................................... 23 1 1 16.00 16 0 0 12 4 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATT.............................................................................. 24 1 1 14.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATA.................................................................................. 20 1 1 13.00 13 13 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATA..................................................................................................................... 22 1 1 12.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGATTTCGTCAGGTATTATCT................................................................................. 21 1 1 11.00 11 7 0 1 3 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAAAA............................................................................. 25 3 1 10.00 10 1 0 0 0 1 2 1 3 0 1 0 0 1 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATT.................................................................................. 20 1 2 10.00 20 20 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGAATTATCT................................................................................. 22 1 1 10.00 10 3 0 7 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATAA................................................................................. 21 2 1 10.00 10 10 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTA....................................................................................... 15 0 1 10.00 10 0 0 0 0 0 10 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCG................................................................................. 21 1 1 9.00 9 3 0 3 2 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTTT............................................................................... 23 2 1 9.00 9 6 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTTT............................................................................... 24 2 1 9.00 9 5 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATTT................................................................................. 22 1 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATAA............................................................................. 25 3 1 9.00 9 8 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTTT................................................................................... 19 1 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAGTTCGTCAGGTATTATCT................................................................................. 20 0 1 9.00 9 4 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGAATTATC.................................................................................. 21 1 1 8.00 8 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGAATTAT................................................................................... 20 1 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTAATACCTTTCGAACACATGA.................................................................................................................... 22 0 1 8.00 8 0 6 0 0 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAC............................................................................... 23 1 1 8.00 8 2 0 3 1 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGCATTATCT................................................................................. 21 1 1 7.00 7 6 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAG............................................................................... 23 0 1 7.00 7 5 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTTCGTCAGGTATTATCT................................................................................. 18 0 1 6.00 6 0 0 0 0 0 6 0 0 0 0 0 0 0 0 0 0
.....................................................................................ATACCTTTCGAACACATG..................................................................................................................... 18 0 1 6.00 6 0 0 0 0 1 5 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTTT................................................................................... 20 1 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTAATACCTTTCGAACACATG..................................................................................................................... 21 0 1 6.00 6 1 2 0 0 0 0 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGATTTCGTCAGGTATTATCT................................................................................. 22 1 1 6.00 6 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGCATTATCT................................................................................. 22 1 1 6.00 6 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTAA................................................................................... 19 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGGATTAT................................................................................... 20 1 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATATTTTTCGAACACATG..................................................................................................................... 22 2 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAAT.................................................................................................................. 25 1 1 5.00 5 4 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCAA................................................................................ 23 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGT........................................................................................ 15 0 1 5.00 5 1 0 0 0 0 4 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTA....................................................................................... 16 0 1 5.00 5 0 0 0 0 0 5 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATTTA................................................................................ 22 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATTT................................................................................. 21 1 2 4.50 9 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGCTCGTCAGGTATTATCT................................................................................. 22 1 1 4.00 4 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................ATTAATACCTTTCGAACACATGA.................................................................................................................... 23 1 1 4.00 4 0 0 0 0 1 1 2 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAATTCGTCAGGTATTATCT................................................................................. 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATA.............................................................................. 24 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGAATTATCTAT............................................................................... 23 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTAGCT................................................................................. 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAGAGTTCGTCAGGTATTATCT................................................................................. 22 1 1 4.00 4 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATAAA............................................................................ 26 3 1 4.00 4 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0
....................................................................................................................CATGAGTTCGTCAGGTATTATC.................................................................................. 22 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATAT............................................................................. 25 2 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACAA...................................................................................................................... 21 1 1 4.00 4 3 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGTAA.................................................................................................................. 25 3 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTAGTCAGGTATTATCT................................................................................. 22 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCAAA............................................................................... 24 2 1 3.00 3 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CATGAGTTCGTCAGGTATTATCT................................................................................. 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCTAACACATG..................................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGAATTATCTA................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGCTCGTCAGGTATTATC.................................................................................. 21 1 1 3.00 3 1 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................ATAAGTTCGTCAGGTATTATCT................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AATACCTTTCGAACACATGA.................................................................................................................... 20 0 1 3.00 3 1 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGTTATTATCT................................................................................. 22 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTAGTTCGTCAGGTATTATCT................................................................................. 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATAA.................................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGCA................................................................................................................... 24 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTAATACCTTTCGAACACATGAT................................................................................................................... 23 0 1 3.00 3 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGGTCGTCAGGTATTATCT................................................................................. 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TAATACCTTTCGAACACATGA.................................................................................................................... 21 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTG................................................................................ 22 1 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGACA.................................................................................................................. 25 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATGT................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTGCGTCAGGTATTATCT................................................................................. 21 1 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................TACTTTCTACTTCATTCCTTTCC................................................................................................................................................................. 23 3 1 3.00 3 0 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTAA............................................................................... 24 1 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACTTTTCGAACACATG..................................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCAA................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTGTCT................................................................................. 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGCCAGGTATTATC.................................................................................. 21 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGGGTTCGTCAGGTATTATCT................................................................................. 22 1 1 3.00 3 1 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTTA................................................................................... 19 2 2 2.50 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TATGAGTTCGTCAGGTATTATC.................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGATCACATG..................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................AGTTCGTCAGGTATTATCT................................................................................. 19 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGTGTTCGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTAATATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGGTCGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAAC.................................................................................................................. 25 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTGTC.................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTACTATCT................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAAAAA............................................................................ 26 3 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTGAGGTATTATCT................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACATTTCGAACACATGA.................................................................................................................... 23 1 1 2.00 2 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................ATGACTTCGTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCATCAGGTATTATC.................................................................................. 21 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTAGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAA........................................................................................................................... 16 0 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATCAGTTCGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCTTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATAAA................................................................................................................... 24 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGCATTAT................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATATTCT................................................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTGTTATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGATCGTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CGAGTTCGTCAGGTATTATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAGTTCGTCAGGTATTATC.................................................................................. 19 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTTGAACACATTA.................................................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATATTTTTCGAACACATGT.................................................................................................................... 23 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGTA................................................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AGAGTTCGTCAGGTATTATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AATAATACCTTTCGAACACATGA.................................................................................................................... 23 1 1 2.00 2 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0
....................................................................................AATACCTTTCGAACACATGAAGT................................................................................................................. 23 2 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGGATTATCTA................................................................................ 22 1 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCAT................................................................................ 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGATTTCGTCAGGTATTAT................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATTA................................................................................. 21 2 2 2.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGTTATTATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................CCTTTCGAACACATGA.................................................................................................................... 16 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCGGGTATTATCT................................................................................. 22 1 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGCATTATCTAT............................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAGAGTTCGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................GTAATACCTTTCGAACACAT...................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTAACT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGGTCGTCAGGTATTATCTA................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGCGTTCGTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATT..................................................................................... 17 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTC................................................................................ 23 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTTA................................................................................... 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAAGACCTTTCGAACACATGA.................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATT..................................................................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTTTT.............................................................................. 24 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCCAACACATGA.................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTAAA.................................................................................. 20 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TAAGTTCGTCAGGTATTATCT................................................................................. 21 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTG................................................................................ 23 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGGCAGGTATTATCT................................................................................. 22 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTTGTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTAGTTCGTCAGGTATTATC.................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATAT.................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGCTCGTCAGGTATTATCT................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAGTTCGTCAGGTATTATCTA................................................................................ 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................ATTAATACCTTTCGAACACATG..................................................................................................................... 22 1 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGCTATTATCT................................................................................. 22 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGCTATTATCTA................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................AATACCTTTCGAACACATG..................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGGAGTTCGTCAGGTATTATCT................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATAA.................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGATT.................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................ATACCTTTCGAACACATGA.................................................................................................................... 19 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................ATGAGTTCGCCAGGTATTATCT................................................................................. 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAG................................................................................................................... 24 1 1 2.00 2 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGTAG.................................................................................................................. 25 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTAATACCTTTCGAACACATGA.................................................................................................................... 23 1 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTGT................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTAAA.............................................................................. 25 2 1 2.00 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGATA.................................................................................................................. 25 1 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAC................................................................................................................... 24 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACAAAA.................................................................................................................... 23 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTTA............................................................................... 23 2 2 1.50 3 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGCGTTCGTCAGGTATTATC.................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTGATACCTTTCGAACACATGA.................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAAAACCTTTCGAACACATGT.................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATCATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATTC................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAAAACATG..................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................TAAGTTCGTCAGGTATTATC.................................................................................. 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAAGTATTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAGTACCTTTCGAACACA....................................................................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCATGTATTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTTGTCAGGTATTATCTAT............................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGGAGTTCGTCAGGTATT..................................................................................... 18 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATTAA............................................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTCGA.............................................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCAT................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTTA............................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATAAGTTCGTCAGGTATTATC.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTATTACCTTTCGAACACATGA.................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................AAGCAATACCTTTCGAACACATG..................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCAAACACATGA.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................TTTTCAGTCATTCATGAGTTCGTCAGG......................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTTTCT................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATAT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTATTA............................................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTG.................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCGTCAGGTATTATCT................................................................................. 16 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGATATTATA.................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTCCGTCAGGTATTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGGGTTCGTCAGGTATTAT................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCATCAGGTATTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCCGGTCTTATCTAA............................................................................... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................TAATACCTTTCGAACACATGAT................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGAATTAT................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTACTACCTTTCGAACACATG..................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................ATGATTTCGTCAGGTATTATC.................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGGGTTCGTCAGGTATTATCTT................................................................................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTTGTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................CGAGTTCGTCAGGTATTATC.................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................GAGTTCGTCAGGTATTATCTT................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTAGTTCGTCAGGTATTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACATATGAAA.................................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACATTTCGAACACATG..................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGCGTTCGTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTTTC.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGCCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGGA................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATGT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGGGTTCGTCAGGTATTATCTAT............................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................TCGTCAGGTATTATCTA................................................................................ 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATTAGTTCGTCAGGTATTAT................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGATATTAT................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGGAATACCTTTCGAACACATGT.................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTGGTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATCAT................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGGAATACCTTTCGAACACATGAA................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGTTATTATCTA................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGGGTTCGTCAGGTATTATCTA................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATCTAT............................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTCTTATCT................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGATTTCGTCAGGTATTATCTAA............................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCACGGATTATCT................................................................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................TGAGTACGTCAGGTATTATCTA................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGCAATACCTTTCGAACACATGA.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATTAA................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACTTTTCGAACACATGAC................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGATCGTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TTAGTTCGTCAGGTATTATCTAT............................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTCT................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCTTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GTGAGTTCGTCAGGTATTATCA................................................................................. 22 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCGGGTATTATCTA................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTACGTCAGGTAGTATCT................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CGGAGTAATACCTTTCGAACACATG..................................................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.................................................................................ACTAATACCTTTCGAACACATG..................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGTATTATG.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTAGT.............................................................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TCAGTTCGTCAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCTAACACAT...................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGATTTCGTCAGGTATTA.................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTAAGGTATTATCT................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGGCAGGTATTATCTAT............................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCCA................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................GTAATACCTTTCGAACACATGAAAA................................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GTTCGTCAGGTATTATCTAT............................................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGCATTATC.................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCATCAGGTATTATCTA................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTGAGGTATTATC.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGGGTTCGTCAGGTATTATC.................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGACTA................................................................................................................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGAATTATCTT................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACATGAAAAT................................................................................................................ 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................AAGGAGTAATACCTTTCGAACACATG..................................................................................................................... 26 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTTGAACACATGAAA.................................................................................................................. 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AGTAATACCTTTCGAACACAAA..................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGCTCGTCAGGTATTATCC................................................................................. 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTCGTCAGGAATTA.................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCTACT.............................................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATGAGTTAGTCAGGTATTAT................................................................................... 20 1 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................ACCTTTCGAACACATGA.................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGGCAGGTATTATC.................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TGAGTTCGTCAGGTATTATCGAA............................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................TGTAATACCTTTCGAACACATG..................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AGGAGTTCGTCAGGTATTAT................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GGAGTTCGTCAGGTATTATCTA................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTCAGCAGTTGAGCCACTCACTTACACTTACCGAAGATGAGAGATGAAGTAACGAAACGTATACTATAGAACGTCATTAAATCATTATGGAAAGCTTGTGTACTAAAAGTCAGTAAGTACTCAAGCAGTCCATAATAGATCAATAACATTTGTAAGTTGAGCGACCGCCTACTCCTTAATGAACACTACATGCTAAGCTCGCATAAATAGACACTTACCG

******************************************************************...(((((((((((..(((((((((..(((((.(((((...........))))).)))))..)))))))))..)))))))))))....****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023

head

 SRR553487

NRT_0-2 hours eggs

 GSM343915

embryo

 M024

male body		 SRR553488

RT_0-2 hours eggs

 SRR618934

dsim w501 ovaries

 SRR902008

ovaries
......................................................................................................................ACTCAAGCAGTCCATAATAGA................................................................................. 21 0 1 7.00 7 4 2 0 1 0 0 0
.................................................................................TCATTATGGAAAGCTTGTG........................................................................................................................ 19 0 1 2.00 2 2 0 0 0 0 0 0
.................................................................................TCATTATGGAAAGCTTGTGT....................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................AAAAATCATTATGGAAAGCTTGT......................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
...............................CGAAGATGAGAGATGAAG........................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0
......................................................................................................................ACTCAGGCAGTCCATAATAGA................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................TAAATCATTATGGAAAGCTTGT......................................................................................................................... 22 0 1 1.00 1 0 0 0 0 1 0 0
.......................GCACTTACCGAAGATGATAGATGAAGT.......................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 0 0 0 1
.........................................................AGTATACTATAGAACGTAATT.............................................................................................................................................. 21 2 1 1.00 1 0 0 1 0 0 0 0
......................................GAGAGATGAAGTAGTGAGACGT................................................................................................................................................................ 22 3 2 0.50 1 0 0 1 0 0 0 0
.........................................GGATGAAGTAAGGAAACGT................................................................................................................................................................ 19 2 2 0.50 1 0 0 1 0 0 0 0
.......................................................................................................................CTCAAGCAGTCCAGAAC.................................................................................... 17 2 6 0.17 1 0 1 0 0 0 0 0
........................................GGGATGAAGTAAGGAAAGGT................................................................................................................................................................ 20 3 16 0.06 1 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 x:3957133-3957352 - dsi-mir-983 Known_mirbase GAGTCGTCAACTCGG-TGAGTGAATG----TGAATGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAA---CTCGCTGGCGGATGAGGAATTACTTGTGATGTACGATTCGAGCGTATTT---------------------------ATCTGT--------------------------GAATGGC
droSec2 scaffold_4:2462159-2462378 + dse_50 confident GAGTCGTCAACTCGG-TGAGTGAATG----TGAATGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCATTCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAA---CTCGCTGGCGGATGAGGAATTACTTGTGATGTACGATTCGAGCGTATTT---------------------------ATCTGT--------------------------GAATGGC
dm3 chrX:4262458-4262623 - dme-mir-983-2 Known_mirbase TGC-------------------------------------------------------------ATATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAA---CTCGATGGCGGATGAGAAATTACTTATGATGTACCATTCTT--GTAATA---------------------------AACTGT--------------------------GTGTGTA
droEre2 scaffold_4690:1633035-1633280 - der_27 confident GAGTCTTGTAAATGTACAAACAAATCTCAGTGTATAGCTTAA---ATCCACCGGAATT------GTGTGATATTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAA---CTCGTTGGCGTGTGAGAAATTGCTCATGATATGCGATTCGGAACCATTCACTGCTGTTTTTC----------AATTTTCAGTGAAT-G------------ATATC---GAATGGC
droEug1 scf7180000409076:263331-263342 - TAGTAACCAACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301703:494650-494676 + GATTAGTTAAT-CGG-CTGTTAAACG----TGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491011:2112059-2112076 + AATTCA--------G-CGAGGGTATG----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453901:209974-210226 + CATTCAATTACTTAAAAATATAAATA----TAAAATATACCTATAACAAATATTAT----TTACCCATC---AT-TGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTAGTTTGGGAGCTTTGGTTATAACATCAATGTAA----CAATTGACTACAAATTAACAAATCAA--TTTATATGTG--------------GATATTCACAGCCACTATTTGTCATATAATTGTTACCAGGATAAGGGTTCCGTTTGGTACAACTGTGT---GC
droVir3 scaffold_12928:5270673-5270692 - TAGTTC--------A-TGAATGATTG----CGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6359:3791311-3791313 - GAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAGTCGTCAACTCGG-TGAGTGAATG----TGAATGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAA---CTCGCTGGCGGATGAGGAATTACTTGTGATGTACGATTCGAGCGTATTT---------------------------ATCTGT--------------------------GAATGGCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................................................TGAGTTCGTCAGGTATTATCT.........................................................................................................................................2116722.0067222734057122783325179602295887000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCT.........................................................................................................................................2216446.006446100122939413973222143830184161028
..................................................................................................................................ATGAGTTCGTCAGGTATTATC..........................................................................................................................................2112808.002808253536301081543062112181001
.........................................................................................AGTAATA----CCTTTCGAACACATG..............................................................................................................................................................................2212195.00219524339106916174193101683981469000
.........................................................................................AGTAATA----CCTTTCGAACACATGA.............................................................................................................................................................................2311858.001858228267694171239243252754765000
..................................................................................................................................ATGAGTTCGTCAGGTATTAT...........................................................................................................................................2011737.001737040021103101011704001
...................................................................................................................................TGAGTTCGTCAGGTATTATCTA........................................................................................................................................2211568.00156851326801745393425738171032001
.........................................................................................AGTAATA----CCTTTCGAACACA................................................................................................................................................................................201947.009472120287227325320017000
.........................................................................................AGTAATA----CCTTTCGAACACAT...............................................................................................................................................................................211893.00893927616601613884301137000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAT.......................................................................................................................................231399.0039919200003111912360000
..................................................................................................................................ATGAGTTCGTCAGGTATTA............................................................................................................................................191358.00358030013000000100224000
...................................................................................................................................TGAGTTCGTCAGGTATTATC..........................................................................................................................................201269.00269431506311300710153000
.........................................................................................AGTAATA----CCTTTCGAACAC.................................................................................................................................................................................191238.002380100228102000006000
.........................................................................................AGTAATA----CCTTTCGAACA..................................................................................................................................................................................181194.001940000185601001001000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAA.......................................................................................................................................231191.00191016150004151500144000
...................................................................................................................................TGAGTTCGTCAGGTATTAT...........................................................................................................................................191165.0016500002300010200139000
.........................................................................................AGTAATA----CCTTTCGAACACATGAAA...........................................................................................................................................................................251136.001360106000341229841032000
...................................................................................................................................TGAGTTCGTCAGGTATTA............................................................................................................................................181120.001200000117100000002000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTT........................................................................................................................................221105.001050200000000000103000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCC.........................................................................................................................................22184.00847552000000000002000
.........................................................................................AGTAATA----CCTTTCGAACACATGAT............................................................................................................................................................................24178.00782600383102100025000
.........................................................................................AGTAATA----CCTTTCGAACACATGT.............................................................................................................................................................................23175.00750101000001020061000
.........................................................................................AGTAATA----CCTTTCGAACACATGAA............................................................................................................................................................................24172.0072032000542210053000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTT........................................................................................................................................23172.00720120000000000060000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCA.........................................................................................................................................22156.0056050000010010049000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTA........................................................................................................................................23152.0052091010135130226000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAAA......................................................................................................................................24145.00450410000214340116000
..................................................................................................................................ATGAGTTCGTCAGGTATTAA...........................................................................................................................................20138.0038020000000000036000
..................................................................................................................................ATGAGTTCGTCAGGTATTT............................................................................................................................................19137.0037000000000000037000
..................................................................................................................................ATGAGTTCGTCAGGTATT.............................................................................................................................................18133.0033031024000003002000
.........................................................................................AGTAATA----CCTTTCGAACACATGAAAA..........................................................................................................................................................................26128.0028011000122000021000
..................................................................................................................................ATGAGTTCGTCAGGTATTATT..........................................................................................................................................21127.0027101000000000025000
...................................................................................................................................TGAGTTCGTCAGGTATTATCA.........................................................................................................................................21126.0026000000000000026000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCG.........................................................................................................................................22124.0024216600000000000000
..................................................................................................................................ATGAGTTCGTCAGGTATTATA..........................................................................................................................................21123.0023000000000000023000
.........................................................................................AGTAATA----CCTTTCGAACACATGC.............................................................................................................................................................................23123.0023000000000000023000
..................................................................................................................................ATGAGTTCGTCAGGTATTATAA.........................................................................................................................................22122.0022000000000000022000
...................................................................................................................................TGAGTTCGTCAGGTATTATCC.........................................................................................................................................21119.0019311500000000000000
.........................................................................................AGTAATA----CCTTTCGAACACATGG.............................................................................................................................................................................23116.0016012400000000000000
...................................................................................................................................TGAGTTCGTCAGGTATTATA..........................................................................................................................................20113.0013000000000000013000
.........................................................................................AGTAATA----CCTTTCGAACACATA..............................................................................................................................................................................22112.0012000000000000012000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAAAA.....................................................................................................................................25110.001000010011312001000
...................................................................................................................................TGAGTTCGTCAGGTATTATT..........................................................................................................................................20210.0020000000000000020000
...................................................................................................................................TGAGTTCGTCAGGTATTATAA.........................................................................................................................................21110.0010000000000000010000
...................................................................................................................................TGAGTTCGTCAGGTA...............................................................................................................................................15110.0010000000000010000000
...................................................................................................................................TGAGTTCGTCAGGTATTATCG.........................................................................................................................................2119.00903200010000003000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTTT.......................................................................................................................................2319.00903000000000006000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTTT.......................................................................................................................................2419.00904000000000005000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTATAA.....................................................................................................................................2519.00900000000100008000
....................................................................................................................................GAGTTCGTCAGGTATTATCT.........................................................................................................................................2019.00900005000000004000
..........................................................................................GTAATA----CCTTTCGAACACATGA.............................................................................................................................................................................2218.00800016010000000000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAC.......................................................................................................................................2318.00803100000002002000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAG.......................................................................................................................................2317.00701001000000005000
......................................................................................................................................GTTCGTCAGGTATTATCT.........................................................................................................................................1816.00600000000006000000
.............................................................................................ATA----CCTTTCGAACACATG..............................................................................................................................................................................1816.00600000010005000000
..........................................................................................GTAATA----CCTTTCGAACACATG..............................................................................................................................................................................2116.00600002003000001000
...................................................................................................................................TGAGTTCGTCAGGTATTAA...........................................................................................................................................1915.00500000000000005000
..................................................................................................................................ATGAGTTCGTCAGGT................................................................................................................................................1515.00500000000004001000
..................................................................................................................................ATGAGTTCGTCAGGTA...............................................................................................................................................1615.00500000000005000000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTATA......................................................................................................................................2414.00400000000000004000
.................................................................................................................................CATGAGTTCGTCAGGTATTATC..........................................................................................................................................2214.00400000000000004000
.........................................................................................AGTAATA----CCTTTCGAACACAA...............................................................................................................................................................................2114.00400000000001003000
.........................................................................................AGTAATA----CCTTTCGAACACATGTAA...........................................................................................................................................................................2513.00300000000000003000
.................................................................................................................................CATGAGTTCGTCAGGTATTATCT.........................................................................................................................................2313.00300000000000003000
............................................................................................AATA----CCTTTCGAACACATGA.............................................................................................................................................................................2013.00300000000002001000
.........................................................................................AGTAATA----CCTTTCGAACACATGCA............................................................................................................................................................................2413.00300000000000003000
..........................................................................................GTAATA----CCTTTCGAACACATGAT............................................................................................................................................................................2313.00301002000000000000
...........................................................................................TAATA----CCTTTCGAACACATGA.............................................................................................................................................................................2113.00300001000000002000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTG........................................................................................................................................2213.00301200000000000000
.........................................................................................AGTAATA----CCTTTCGAACACATGACA...........................................................................................................................................................................2513.00300000000000003000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTAA.......................................................................................................................................2413.00302000000000001000
...................................................................................................................................TGAGTTCGTCAGGTATTTA...........................................................................................................................................1922.50500000000000005000
.....................................................................................................................................AGTTCGTCAGGTATTATCT.........................................................................................................................................1912.00200101000000000000
.........................................................................................AGTAATA----CCTTTCGAACACATGAAC...........................................................................................................................................................................2512.00200200000000000000
.........................................................................................AGTAATA----CCTTTCGAA....................................................................................................................................................................................1612.00200000000001001000
....................................................................................................................................GAGTTCGTCAGGTATTATC..........................................................................................................................................1912.00200001000001000000
.........................................................................................AGTAATA----CCTTTCGAACACATGTA............................................................................................................................................................................2412.00200000000000002000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCAT........................................................................................................................................2312.00200000000000002000
...................................................................................................................................TGAGTTCGTCAGGTATTATTA.........................................................................................................................................2122.00400000000000004000
....................................................................................................CCTTTCGAACACATGA.............................................................................................................................................................................1612.00200000000002000000
..........................................................................................GTAATA----CCTTTCGAACACAT...............................................................................................................................................................................2012.00200001000000001000
...................................................................................................................................TGAGTTCGTCAGGTATT.............................................................................................................................................1712.00200000000002000000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTC........................................................................................................................................2312.00200100000000001000
..................................................................................................................................ATGAGTTCGTCAGGTATTTA...........................................................................................................................................2012.00200000000000002000
.........................................................................................AGTAATA----CCTTTCGAACACATT..............................................................................................................................................................................2212.00202000000000000000
...................................................................................................................................TGAGTTCGTCAGGTATTAAA..........................................................................................................................................2012.00200000000000002000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTG........................................................................................................................................2312.00200000000001001000
..................................................................................................................................ATGAGTTCGTCAGGTATAT............................................................................................................................................1912.00200000000000002000
....................................................................................................................................GAGTTCGTCAGGTATTATCTA........................................................................................................................................2112.00200001000000001000
............................................................................................AATA----CCTTTCGAACACATG..............................................................................................................................................................................1912.00200000000002000000
.........................................................................................AGTAATA----CCTTTCGAACACATGATT...........................................................................................................................................................................2512.00200000000000002000
.............................................................................................ATA----CCTTTCGAACACATGA.............................................................................................................................................................................1912.00200011000000000000
.........................................................................................AGTAATA----CCTTTCGAACACATGAG............................................................................................................................................................................2412.00200000000001001000
.........................................................................................AGTAATA----CCTTTCGAACACATGTAG...........................................................................................................................................................................2512.00200000000000002000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTAAA......................................................................................................................................2512.00200100010000000000
.........................................................................................AGTAATA----CCTTTCGAACACATGATA...........................................................................................................................................................................2512.00200000001000001000
.........................................................................................AGTAATA----CCTTTCGAACACATGAC............................................................................................................................................................................2412.00202000000000000000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTTA.......................................................................................................................................2321.50301000000001001000
..................................................................................................................................ATGAGTTCGTCAGGTATTATTC.........................................................................................................................................2211.00100100000000000000
...................................................................................................................................TGAGTTCGTCAGGTATTATCAT........................................................................................................................................2211.00100000000000001000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTTA.......................................................................................................................................2411.00100000000000001000
....................................................................................................................TTTTCAG-TCATTCATGAGTTCGTCAGG.................................................................................................................................................2711.00100000000100000000
..................................................................................................................................ATGAGTTCGTCAGGTATTG............................................................................................................................................1911.00100000000000001000
........................................................................................................................................TCGTCAGGTATTATCT.........................................................................................................................................1611.00100000000001000000
...........................................................................................TAATA----CCTTTCGAACACATGAT............................................................................................................................................................................2211.00100000000000001000
....................................................................................................................................GAGTTCGTCAGGTATTATCTT........................................................................................................................................2111.00100000000000001000
.........................................................................................AGTAATA----CCTTTCGAACACATGGA............................................................................................................................................................................2411.00100000000000001000
........................................................................................................................................TCGTCAGGTATTATCTA........................................................................................................................................1711.00100000000001000000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTAT.......................................................................................................................................2411.00100000000000001000
..................................................................................................................................ATGAGTTCGTCAGGTATTATG..........................................................................................................................................2111.00100000000000001000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAGT......................................................................................................................................2411.00100000010000000000
..........................................................................................GTAATA----CCTTTCGAACACATGAAAA..........................................................................................................................................................................2511.00100000000000001000
......................................................................................................................................GTTCGTCAGGTATTATCTAT.......................................................................................................................................2011.00100000000001000000
.........................................................................................AGTAATA----CCTTTCGAACACAAA..............................................................................................................................................................................2211.00100000000000001000
...............................................................................................A----CCTTTCGAACACATGA.............................................................................................................................................................................1711.00100000000001000000
droSec2
GAGTCGTCAACTCGG-TGAGTGAATG----TGAATGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCATTCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAA---CTCGCTGGCGGATGAGGAATTACTTGTGATGTACGATTCGAGCGTATTT---------------------------ATCTGT--------------------------GAATGGCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................................................TGAGTTCGTTAGGTATTATCT.........................................................................................................................................211361.00361832252330
...................................................................................................................................TGAGTTCGTTAGGTATTATCTA........................................................................................................................................221224.00224631341017
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAA.......................................................................................................................................23175.007555785
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAT.......................................................................................................................................23171.007166410
..................................................................................................................................ATGAGTTCGTTAGGTATTATCT.........................................................................................................................................22165.0065105122
...................................................................................................................................TGAGTTCGTTAGGTATTATC..........................................................................................................................................20132.003212614
.........................................................................................AGTAATA----CCTTTCGAACATATG..............................................................................................................................................................................22132.003225610
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAAA......................................................................................................................................24126.002651830
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAG.......................................................................................................................................23123.002302201
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAGT......................................................................................................................................24119.00199505
.........................................................................................AGTAATA----CCTTTCGAACATATGA.............................................................................................................................................................................23118.001818000
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAAAA.....................................................................................................................................25114.001411210
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAC.......................................................................................................................................23114.001411210
..................................................................................................................................ATGAGTTCGTTAGGTATTATC..........................................................................................................................................21112.00121812
.........................................................................................AGTAATA----CCTTTCGAACATAT...............................................................................................................................................................................2116.0061401
...................................................................................................................................TGAGTTCGTTAGGTATTATCTATA......................................................................................................................................2415.0050500
....................................................................................................................................GAGTTCGTTAGGTATTATCT.........................................................................................................................................2015.0055000
.......................................................................................TTAGTAATA----CCTTTCGAACATA................................................................................................................................................................................2215.0054100
..................................................................................................................................ATGAGTTCGTTAGGTATTAT...........................................................................................................................................2014.0040400
.....................................................................................................................................AGTTCGTTAGGTATTATCTAG.......................................................................................................................................2113.0030300
....................................................................................................................................GAGTTCGTTAGGTATTATCTAT.......................................................................................................................................2213.0032100
...................................................................................................................................TGAGTTCGTTAGGTATTAT...........................................................................................................................................1913.0030210
.....................................................................................................................................AGTTCGTTAGGTATTATCTAGT......................................................................................................................................2213.0031200
........................................................................................TAGTAATA----CCTTTCGAACATAT...............................................................................................................................................................................2213.0033000
..................................................................................................................................ATGAGTTCGTTAGGTATTATCTAA.......................................................................................................................................2412.0020200
....................................................................................................................................GAGTTCGTTAGGTATTATCTAG.......................................................................................................................................2212.0021100
..........................................................................................GTAATA----CCTTTCGAACATATG..............................................................................................................................................................................2112.0022000
.........................................................................................AGTAATA----CCTTTCGAACATATGT.............................................................................................................................................................................2312.0020200
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAGA......................................................................................................................................2411.0010100
..........................................................................................GTAATA----CCTTTCGAACATAT...............................................................................................................................................................................2011.0011000
...................................................................................................................................TGAGTTCGTTAGGTATTATCTATC......................................................................................................................................2411.0010100
..................................................................................................................................ATGAGTTCGTTAGGTATTATCTT........................................................................................................................................2311.0010100
...................................................................................................................................TGAGTTCGTTAGGTATTAA...........................................................................................................................................1911.0010100
.......................................................................................TTAGTAATA----CCTTTCGAACAT.................................................................................................................................................................................2111.0010001
.........................................................................................AGTAATA----CCTTTCGAACATA................................................................................................................................................................................2011.0011000
.......................................................................................TTAGTAATA----CCTTTCGAACA..................................................................................................................................................................................2011.0011000
..................................................................................................................................ATGAGTTCGTTAGGTATTA............................................................................................................................................1911.0010001
...................................................................................................................................TGAGTTCGTTAGGTATTATCTGT.......................................................................................................................................2311.0010100
.....................................................................................................................................AGTTCGTTAGGTATTATCTAGG......................................................................................................................................2211.0011000
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAGTT.....................................................................................................................................2511.0010100
....................................................................................................................................GAGTTCGTTAGGTATTATCTA........................................................................................................................................2111.0011000
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAGTA.....................................................................................................................................2511.0010100
dm3
TGC-------------------------------------------------------------ATATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAA---CTCGATGGCGGATGAGAAATTACTTATGATGTACCATTCTT--GTAATA---------------------------AACTGT--------------------------GTGTGTASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..........................................................................................ATAATA----CGTTTCGAACTAATGA.............................................................................................................................................................................22243492.5086985000000000011710000000119881330030000000056349616731828121923311675030000111000000000000000004235383501358014417101290044001113831719911006700080000000000000111564210109005342213910215632370401311443893130240500014130900084113051100010012311430520002510154000000222100000010001946197394319388489148382444349314744416135514300720912239215301616147144726571153636783179711693537151020160111669471113481183092074411273224908104407995161242557224969810333925835136288229617564796818336435914187345411656878530395444433203271219693394
..........................................................................................ATAATA----CGTTTCGAACTAATG..............................................................................................................................................................................21217263.50345270000000000050000000034231480000100000026933310393432646451115000000000000000000000002319183004401013126019101402018106304781412400013000010301000200068000000275063133883631623334221030020010401100167111130840000012849299100021601140000002140002004041015626774393209667667688288110011000030030141315214847100109414022118138365134752605231213105841117115206135144331671251159162322121974829213911215428042701731220219516783931015144332782517027711563461738104450130
..................................................................................................................................ATTAGGTAGTTACGCATTATCT.........................................................................................................................................22215955.5031911000001000001500000100223935132005000000003612663219548619111749381200000000000000000000000973601084110013019810460122620411234149011170100000000002000000000001412045295251115122950400000107000330300039080607100520688616882310060046122000007410300000014792147360711791351105176342120090000117040441125012033101000791222306832472324613201269542712144129081227164538662152134091225311642592443710976204186015572384391577520231357100231813157121010299040
..........................................................................................ATAATA----CGTTTCGAACTAAT...............................................................................................................................................................................20211806.0023612000000000004000000003111600200000000000001400100000200000000000000000000000001589110000002100100601600002100000200000600000000000020001613000000003300211270033000001403000210400211030305000000666530000060019000000110000000010111613393383615429680035000000001896190017322012425102413162913360863002512413627040911656453115109101265034162114171536171932061142461740173227015008037340513122062227120
..................................................................................................................................ATTAGGTAGTTACGCATTATC..........................................................................................................................................2123949.007898000001000000000000001200664000000000000200001111001015510000000000000000000000032010000100000100110060004000300000100070000000000000000450000000003420000133100000002000000000001300000000002018203661000600325000000060000000005343817134805031302000010000010019009170041260510159108011200131037185230516750133178110011807632200182912324911436132204710310193133411949116011365221286295430
..................................................................................................................................ATTAGGTAGTTACGCATTAT...........................................................................................................................................2021670.00334000000000000000000000100386001000000000000000100000100000000000000000000000000010010000200000000200400000000000001000300000000000000000000000000000100003000000000002200000000010100000000300103133800008402830000000000000005106108701000000100200000000000004005400000303005000402021085121519967192001654010143121631006012822931044822462210128442010312000003162800
..........................................................................................ATAATA----CGTTTCGAACTAATGAA............................................................................................................................................................................2321168.502337000000000002000000003001000000000000000002010000001632000000000000000000000001101030000000010060030020000000000500010100000000000000100000000350305010000430000000000042050002406000300000004508300003106000000024000100000119321027234329264612740058033000000010207500391001001010013000011000196006402731037000118800001642810700131758141828001224617700003821040704701220021200
..........................................................................................ATAATA----CGTTTCGAACTAATGATC...........................................................................................................................................................................242904.50180900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285524000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATAATA----CGTTTCGAACTAA................................................................................................................................................................................192691.0013820000000000000000000000040000000000000100001000000000000000000000000000000000110100000000100000000000000000000000000000000000000000033000000000000000011000000000000000102000200000000000011301000020050000000000000010000210003201007005000000000110111036002007041083003011000240231212110091922011000000100202002013690000109000001322200117200
...........................................................................................TAATA----CGTTTCGAACTAATGA.............................................................................................................................................................................212528.001056000000000000000000006003000000000000101000200000103000000000000000000000000000000000000000000300000000000030001000000000000000000000000000000000010001030010000400000000000000000000000000626000060200000002000000000003814041257322200400000000000000001000100401301700200000032057292800004030001922100220340140205622901001101001010411100031100
...................................................................................................................................TTAGGTAGTTACGCATTATCT.........................................................................................................................................212424.0084800001000000610000000701155000000000000000000010001000100000000000000000000000052120000401101010450117000203016522022200800000000000000000000000000000000000000000000000000000000110002000000005400250000440200000001100000000024122301010001000000000000000002003000000100001900300010023023100300001270000200300030202010024032000032000000010000001200
..........................................................................................ATAATA----CGTTTCGAACTAATGT.............................................................................................................................................................................222369.507390000000000000000000000030000000000001000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000101201000000000000000000101000000000001502100001101300000012000000000111710100001000000000000001000310220000010000151000000000610132070011268000063720002037291500077320000187100000020000200310
..........................................................................................ATAATA----CGTTTCGAACTAATGAAA...........................................................................................................................................................................242312.506250000000000000000000010100000000000001001000000010001000000000000000000000000000000000000000002001000002000000030002000020002000000000000000221000010000040000000000001002002143300050000005180430000603700000007000000000102903101237171335810001331200000000000120050000000000000000000002700230010000100005605200030100130012106000010000000120200000000
...........................................................................................TAATA----CGTTTCGAACTAATGAT............................................................................................................................................................................222167.0033400000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000010000000000000000000180000000000000000000000000010010000000000000000000000000000000000000000060300000000000000000000000000141001010031000100000000001010020000001001090000000000410181300001530000010000100010000000167000127000100010000000200
..................................................................................................................................ATTAGGTAGTTACGCATTATCTA........................................................................................................................................232130.0026000000020001700000000500290000000000010000000000000010000000000000000000000000000003000100001002610700440100100201800190000000000000000100000000010000000010000000000000000000001000001000000040200008090000000300000000000450010110000000000000000000010000000000000000000100001300127250000100008000000003000000002100000000000000000000000
..........................................................................................ATAATA----CGTTTCGAACTAATA..............................................................................................................................................................................212123.0024600000000000200000000000110000000000000000000000000000000000000000000000000000000000000000000002001000000000000010002000000000000000000000000000000000000000000000000000000000102000000000003101900001901200000000000000000011020030001000000000000000001100110000001010020000000000103150000002800000240001000705170000017000040000010110000000200
...........................................................................................TAATA----CGTTTCGAACTAATG..............................................................................................................................................................................202109.50219000000000000001000000003000000000000002000000000000000000000000000000000000000000000000010000200000100000000000000000000000000000001000000010000000000000000200000000000000010000000000000002000020100000000000000000007103000012000000000000000000002100000100005010000000010004110000930000000000000000100000148000023000000000000010100
...................................................................................................................................TTAGGTAGTTACGCATTATC..........................................................................................................................................202103.5020700000000000000000000000280000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001401400008011000000000000000000019200000000000000000000000000000100000100008000000000000000030000250000100000010010200021130000027010001000000001100
..........................................................................................ATAATA----CGTTTCGAACTAATGAAAA..........................................................................................................................................................................25298.501970000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000030000000000000000000000101000400000000000001511400003018000000310000000000131011104752200003000000000000110090000000000000000000004400310010000000008030000000006300013100000000001040000000100
..........................................................................................ATAATA----CGTTTCGAACTAATGC.............................................................................................................................................................................22296.501930000000000000000000000000000000000000000003000000030000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000101000000000000000000100000000000000000000000000000000000000000031000000001000000000000000030011001002000010000000000500747113000147000033010031316011010201900002000000000000000000
..........................................................................................ATAATA----CGTTTCGAACTAAG...............................................................................................................................................................................20295.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000100000000000000000000018300000000000000000000000300001000000000000000000
..................................................................................................................................ATTAGGTAGTTACGCATTA............................................................................................................................................19289.0017800000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003015000070230000000000000000000610010000000000000000000000000110000000000100301000001001511000046000030000000004321000114000018000000000000000100
..........................................................................................ATAATA----CGTTTCGAACTAATT..............................................................................................................................................................................21281.501630000000000000000000000000010000000000000010000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000010000000000000000000010001020020007001201202000000000000002010000101000010000000000001000001000008000000000000001100
..........................................................................................ATAATA----CGTTTCGAACTA.................................................................................................................................................................................18278.501570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000022330000000000000000000000000000000000010000000000000000000100000000000000000000000000151000100000000000000000000000000000000010040010000000401030100005700002000000100201001010100000000000000000000100
..........................................................................................ATAATA----CGTTTCGAACTAATGG.............................................................................................................................................................................22254.00108000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000002100000000200100000000000000002000000000001001000000040001707000031000021110001000001000031700008000000000000000100
..........................................................................................ATAATA----CGTTTCGAACTAATGAT............................................................................................................................................................................23249.0098000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000102000010100000002000000000002002120002000011700000000000000000000000000100000000002014121400002200000000000001000000031400002000000010000000000
..........................................................................................ATAATA----CGTTTCGAACTAATC..............................................................................................................................................................................21248.009600000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000020100200000000001020610000045000000000000101001000002600002000000000000000000
..................................................................................................................................ATTAGGTAGTTACGCATTATCTATC......................................................................................................................................25246.009200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATAATA----CGTTTCGAACTAAA...............................................................................................................................................................................20239.007800000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000040100000010000000000000000000300000000010000000000000000100100000000000100100000000000300000026000000000000000000000002500005000000000000001100
..........................................................................................ATAATA----CGTTTCGAACTAATGAG............................................................................................................................................................................23235.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000070100000000000000000000000000000000000000000102000000300000000000000000001010000002000000000000000000000000000000001000000000020009000000100004101000301103700014400004000003000000000000
...........................................................................................TAATA----CGTTTCGAACTAAT...............................................................................................................................................................................19232.50650000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000001000000000000000000000001000010030000000000000011000004300000000000000001000001300005000000000000000000
..................................................................................................................................ATTAGGTAGTTACGCATTATCC.........................................................................................................................................22232.006400000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000011020000201000000000000000000070000000001000000000000000000000000000000010010000000100060100001700000000001001100000000200004000000000000000000
..................................................................................................................................ATTAGGTAGTTACGCATTATA..........................................................................................................................................21230.006000000000000300000000000140000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000002020000007000000000000000000010000000000000000000000000000000000000000000000000000100130000001700000000000000100100101100000000000000000000000
..................................................................................................................................ATTAGGTAGTTACGCATT.............................................................................................................................................18228.505700000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000001030000000020000000000000000000151000000000000000000000000000001000000000010000000000000000000002000004010000000101000000000000000000000000000000
..........................................................................................ATAATA----CGTTTCGAACTAATGAAC...........................................................................................................................................................................24228.50570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000459000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000
.........................................................................................AATAATA----CGTTTCGAACTAATG..............................................................................................................................................................................22225.50510000000000000000000010000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000200010000000000000000000000000000000040000000001500060000001500002000000000000100000400003000000010000000100
..................................................................................................................................ATTAGGTAGTTACGCATTATCA.........................................................................................................................................22223.00460000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000206000000700000000000000000004000000000000010000000000000000000000000001000000000000001000000400000020000000000000000100000000000000000000000
...................................................................................................................................TTAGGTAGTTACGCATTAT...........................................................................................................................................19223.00460000000000000000000000040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004060000007000000000000000000010000000000000000000000000000001000001000030100000000000000000001000000000000000000100000400001000000010000000000
.........................................................................................AATAATA----CGTTTCGAACTAAT...............................................................................................................................................................................21221.50430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000102000000000000000000000000000001000010000000000000020000002400000200000000000000000500003000000000000000000
.........................................................................................AATAATA----CGTTTCGAACTAATGA.............................................................................................................................................................................23220.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000110201110000000000000000000000000000000010000000000000230000001600000200000100001000000300001000000000000000100
..........................................................................................ATAATA----CGTTTCGAACTAATGAC............................................................................................................................................................................23219.5039000000000000000000000000000000000000000000100000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000004000010001000085000000000000000100000000000000000000020002000000400002000000001000000001300000000000000000000000
...........................................................................................TAATA----CGTTTCGAACTAATGAA............................................................................................................................................................................22219.5039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000010100000010000000000006001010212000000000000000002000000000000001000000000000013010000100001100000000100000000100001000000010100000000
...................................................................................................................................TTAGGTAGTTACGCATTATCTA........................................................................................................................................22216.0032000000000003100000000002000000000000000000000000100000000000000000000000000000000000000000100500300010000000006000100000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000102000000000000010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droEre2
GAGTCTTGTAAATGTACAAACAAATCTCAGTGTATAGCTTAA---ATCCACCGGAATT------GTGTGATATTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAA---CTCGTTGGCGTGTGAGAAATTGCTCATGATATGCGATTCGGAACCATTCACTGCTGTTTTTC----------AATTTTCAGTGAAT-G------------ATATC---GAATGGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................................................AATGCGAAACGGATTATTAAG.......................................................................................................................................2113196.00319622013228523070
.....................................................................................................................................AATGCGAAACGGATTATTAAGT......................................................................................................................................2212871.00287128481325472710
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTG..............................................................2212215.00221582219219951150
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACT...............................................................211622.0062222240538560
.....................................................................................................................................AATGCGAAACGGATTATTAAGTT.....................................................................................................................................231139.001390000128110
.....................................................................................................................................AATGCGAAACGGATTATTAA........................................................................................................................................202127.502553020223270
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCAC................................................................20173.007330106720
.....................................................................................................................................AATGCGAAACGGATTATTAAGTA.....................................................................................................................................23160.006000105360
...................................................................................................................................TAAATGCGAAACGGATTATTAA........................................................................................................................................22148.004800004080
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGT.............................................................23147.004730004310
.....................................................................................................................................AATGCGAAACGGATTATTAAGA......................................................................................................................................22144.0044000034100
....................................................................................................................................AAATGCGAAACGGATTATTAAG.......................................................................................................................................22141.004110013450
...................................................................................................................................TAAATGCGAAACGGATTATTAAG.......................................................................................................................................23137.003700103150
.......................................................................................TTAATAATT----CGATTCGAAGTTA................................................................................................................................................................................22132.003231002620
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCA.................................................................19131.003100002830
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTA..............................................................22122.002200102100
......................................................................................................................................ATGCGAAACGGATTATTAAGT......................................................................................................................................21121.002120001900
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGA.............................................................23115.001500001410
...................................................................................................................................TAAATGCGAAACGGATTATTAAA.......................................................................................................................................23213.002600002060
......................................................................................................................................ATGCGAAACGGATTATTAAG.......................................................................................................................................20112.00122000820
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTT..............................................................22111.00111000910
.....................................................................................................................................AATGCGAAACGGATTATTAAGTTA....................................................................................................................................2417.0070000610
..............................................................................................................................................................................................................GCGATTCGGAACCATTCACTG..............................................................2115.0054000100
.....................................................................................................................................AATGCGAAACGGATTATTAAGTTT....................................................................................................................................2415.0050010220
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCAA................................................................2015.0050000410
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACA...............................................................2115.0050000410
.....................................................................................................................................AATGCGAAACGGATTATTA.........................................................................................................................................1924.0081000610
...................................................................................................................................TAAATGCGAAACGGATTATTA.........................................................................................................................................2114.0040000400
.....................................................................................................................................AATGCGAAACGGATTATT..........................................................................................................................................1823.5071000060
.....................................................................................................................................AATGCGAAACGGATTATTAAGC......................................................................................................................................2223.0060000510
.....................................................................................................................................AATGCGAAACGGATTATTAAGTC.....................................................................................................................................2313.0030000210
...................................................................................................................................TAAATGCGAAACGGATTATT..........................................................................................................................................2013.0031000110
....................................................................................................................................AAATGCGAAACGGATTATTAA........................................................................................................................................2122.5050000410
...............................................................................................................................................................................................................CGATTCGGAACCATTCACTG..............................................................2012.0021000100
....................................................................................................................................AAATGCGAAACGGATTATTAAGT......................................................................................................................................2312.0020000110
................................................................................................................................................................................................................GATTCGGAACCATTCACTG..............................................................1912.0021000100
...................................................................................................................................TAAATGCGAAACGGATTATTAAGT......................................................................................................................................2412.0020000200
.......................................................................................................................................TGCGAAACGGATTATTAAG.......................................................................................................................................1912.0020000200
.......................................................................................................................................TGCGAAACGGATTATTAAGT......................................................................................................................................2012.0020000200
.....................................................................................................................................AATGCGAAACGGATTATTAAGTTAA...................................................................................................................................2512.0020000200
........................................................................................................................................GCGAAACGGATTATTAAG.......................................................................................................................................1812.0020000200
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTAA.............................................................2312.0020000200
.....................................................................................................................................AATGCGAAACGGATTATTAAGTG.....................................................................................................................................2312.0020000110
.....................................................................................................................................AATGCGAAACGGATTATTAAT.......................................................................................................................................2121.5030000120
...................................................................................................................................TAAATGCGAAACGGATTATTAAAA......................................................................................................................................2421.5030000210
.....................................................................................................................................AATGCGAAACGGATTATTAAGAA.....................................................................................................................................2311.0010000010
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCAAA...............................................................2111.0010000100
.....................................................................................................................................AATGCGAAACGGATTATTAAGTTAAA..................................................................................................................................2611.0010000100
...............................................................................................................................................................................................................CGATTCGGAACCATTCACT...............................................................1911.0010000010
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGTAA...........................................................2511.0010000100
...............................................................................................................................................................................................................CGATTCGGAACCATTCACTA..............................................................2011.0010000100
.....................................................................................................................................AATGCGAAACGGATTATTAAGTAC....................................................................................................................................2411.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGC.............................................................2311.0010000100
...................................................................................................................................TAAATGCGAAACGGATTATTAAAAA.....................................................................................................................................2521.0020000200
.......................................................................................TTAATAATT----CGATTCGAAGTTATGTGCTT.........................................................................................................................................................................2911.0011000000
.........................................................................................AATAATT----CGATTCGAAGTT.................................................................................................................................................................................1911.0011000000
.....................................................................................................................................AATGCGAAACGGATTATTAAGTTAT...................................................................................................................................2511.0010000100
...................................................................................................................................TAAATGCGAAACGGATTATTAAGA......................................................................................................................................2411.0010000100
.....................................................................................................................................AATGCGAAACGGATTATTAAGTAT....................................................................................................................................2411.0010000100
.....................................................................................................................................AATGCGAAACGGATTATTT.........................................................................................................................................1921.0020000020
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGCT............................................................2411.0010000100
...................................................................................................................................TAAATGCGAAACGGATTATTAAT.......................................................................................................................................2311.0010000100
................................................................................................................................................................................................................GATTCGGAACCATTCACT...............................................................1811.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCT.................................................................1911.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGTAT...........................................................2511.0010000100
.......................................................................................TTAATAATT----CGATTCGAAGTTAT...............................................................................................................................................................................2311.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTAT.............................................................2311.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTTT.............................................................2311.0010000100
.......................................................................................TTAATAATT----CGATTCGAAGTTAA...............................................................................................................................................................................2311.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACC...............................................................2111.0010000100
....................................................................................................................................AAATGCGAAACGGATTATTA.........................................................................................................................................2020.5010010000
.....................................................................................................................................AATGCGAAACGGATTATTAT........................................................................................................................................2020.5010000010
.....................................................................................................................................AATGCGAAACGGATTATTAGT.......................................................................................................................................2120.5010000100
.....................................................................................................................................AATGCGAAACGGATTATTAAC.......................................................................................................................................2120.5010000010
....................................................................................................................................AAATGCGAAACGGATTATT..........................................................................................................................................1920.5010000100
droEug1
TAGTAACCAACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GATTAGTTAAT-CGG-CTGTTAAACG----TGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AATTCA--------G-CGAGGGTATG----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CATTCAATTACTTAAAAATATAAATA----TAAAATATACCTATAACAAATATTAT----TTACCCATC---AT-TGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTAGTTTGGGAGCTTTGGTTATAACATCAATGTAA----CAATTGACTACAAATTAACAAATCAA--TTTATATGTG--------------GATATTCACAGCCACTATTTGTCATATAATTGTTACCAGGATAAGGGTTCCGTTTGGTACAACTGTGT---GCSizeHit CountTotal NormTotal
No Reads
droVir3
TAGTTC--------A-TGAATGATTG----CGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
GAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads

Generated: 10/20/2015 at 06:59 PM

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 x:3957133-3957352 - dsi-mir-983 Known_mirbase GAGTCGTCAACTCGG-TGAGTGAATG----TGAATGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAA---CTCGCTGGCGGATGAGGAATTACTTGTGATGTACGATTCGAGCGTATTT---------------------------ATCTGT--------------------------GAATGGC
droSec2 scaffold_4:2462159-2462378 + dse_50 confident GAGTCGTCAACTCGG-TGAGTGAATG----TGAATGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCATTCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAA---CTCGCTGGCGGATGAGGAATTACTTGTGATGTACGATTCGAGCGTATTT---------------------------ATCTGT--------------------------GAATGGC
dm3 chrX:4262458-4262623 - dme-mir-983-2 Known_mirbase TGC-------------------------------------------------------------ATATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAA---CTCGATGGCGGATGAGAAATTACTTATGATGTACCATTCTT--GTAATA---------------------------AACTGT--------------------------GTGTGTA
droEre2 scaffold_4690:1633035-1633280 - der_27 confident GAGTCTTGTAAATGTACAAACAAATCTCAGTGTATAGCTTAA---ATCCACCGGAATT------GTGTGATATTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAA---CTCGTTGGCGTGTGAGAAATTGCTCATGATATGCGATTCGGAACCATTCACTGCTGTTTTTC----------AATTTTCAGTGAAT-G------------ATATC---GAATGGC
droEug1 scf7180000409076:263331-263342 - TAGTAACCAACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301703:494650-494676 + GATTAGTTAAT-CGG-CTGTTAAACG----TGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491011:2112059-2112076 + AATTCA--------G-CGAGGGTATG----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453901:209974-210226 + CATTCAATTACTTAAAAATATAAATA----TAAAATATACCTATAACAAATATTAT----TTACCCATC---AT-TGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTAGTTTGGGAGCTTTGGTTATAACATCAATGTAA----CAATTGACTACAAATTAACAAATCAA--TTTATATGTG--------------GATATTCACAGCCACTATTTGTCATATAATTGTTACCAGGATAAGGGTTCCGTTTGGTACAACTGTGT---GC
droVir3 scaffold_12928:5270673-5270692 - TAGTTC--------A-TGAATGATTG----CGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6359:3791311-3791313 - GAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GAGTCGTCAACTCGG-TGAGTGAATG----TGAATGGCTTCTACTCTCTACTTCATTGCTTTGCATATG---ATATCTTGCAGTAATTTAGTAATA----CCTTTCGAACACATGATTTTCAG-TCATTCATGAGTTCGTCAGGTATTATCTAGTTATTGTAAACATTCAA---CTCGCTGGCGGATGAGGAATTACTTGTGATGTACGATTCGAGCGTATTT---------------------------ATCTGT--------------------------GAATGGCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................................................TGAGTTCGTCAGGTATTATCT.........................................................................................................................................2116722.0067222734057122783325179602295887000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCT.........................................................................................................................................2216446.006446100122939413973222143830184161028
..................................................................................................................................ATGAGTTCGTCAGGTATTATC..........................................................................................................................................2112808.002808253536301081543062112181001
.........................................................................................AGTAATA----CCTTTCGAACACATG..............................................................................................................................................................................2212195.00219524339106916174193101683981469000
.........................................................................................AGTAATA----CCTTTCGAACACATGA.............................................................................................................................................................................2311858.001858228267694171239243252754765000
..................................................................................................................................ATGAGTTCGTCAGGTATTAT...........................................................................................................................................2011737.001737040021103101011704001
...................................................................................................................................TGAGTTCGTCAGGTATTATCTA........................................................................................................................................2211568.00156851326801745393425738171032001
.........................................................................................AGTAATA----CCTTTCGAACACA................................................................................................................................................................................201947.009472120287227325320017000
.........................................................................................AGTAATA----CCTTTCGAACACAT...............................................................................................................................................................................211893.00893927616601613884301137000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAT.......................................................................................................................................231399.0039919200003111912360000
..................................................................................................................................ATGAGTTCGTCAGGTATTA............................................................................................................................................191358.00358030013000000100224000
...................................................................................................................................TGAGTTCGTCAGGTATTATC..........................................................................................................................................201269.00269431506311300710153000
.........................................................................................AGTAATA----CCTTTCGAACAC.................................................................................................................................................................................191238.002380100228102000006000
.........................................................................................AGTAATA----CCTTTCGAACA..................................................................................................................................................................................181194.001940000185601001001000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAA.......................................................................................................................................231191.00191016150004151500144000
...................................................................................................................................TGAGTTCGTCAGGTATTAT...........................................................................................................................................191165.0016500002300010200139000
.........................................................................................AGTAATA----CCTTTCGAACACATGAAA...........................................................................................................................................................................251136.001360106000341229841032000
...................................................................................................................................TGAGTTCGTCAGGTATTA............................................................................................................................................181120.001200000117100000002000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTT........................................................................................................................................221105.001050200000000000103000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCC.........................................................................................................................................22184.00847552000000000002000
.........................................................................................AGTAATA----CCTTTCGAACACATGAT............................................................................................................................................................................24178.00782600383102100025000
.........................................................................................AGTAATA----CCTTTCGAACACATGT.............................................................................................................................................................................23175.00750101000001020061000
.........................................................................................AGTAATA----CCTTTCGAACACATGAA............................................................................................................................................................................24172.0072032000542210053000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTT........................................................................................................................................23172.00720120000000000060000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCA.........................................................................................................................................22156.0056050000010010049000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTA........................................................................................................................................23152.0052091010135130226000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAAA......................................................................................................................................24145.00450410000214340116000
..................................................................................................................................ATGAGTTCGTCAGGTATTAA...........................................................................................................................................20138.0038020000000000036000
..................................................................................................................................ATGAGTTCGTCAGGTATTT............................................................................................................................................19137.0037000000000000037000
..................................................................................................................................ATGAGTTCGTCAGGTATT.............................................................................................................................................18133.0033031024000003002000
.........................................................................................AGTAATA----CCTTTCGAACACATGAAAA..........................................................................................................................................................................26128.0028011000122000021000
..................................................................................................................................ATGAGTTCGTCAGGTATTATT..........................................................................................................................................21127.0027101000000000025000
...................................................................................................................................TGAGTTCGTCAGGTATTATCA.........................................................................................................................................21126.0026000000000000026000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCG.........................................................................................................................................22124.0024216600000000000000
..................................................................................................................................ATGAGTTCGTCAGGTATTATA..........................................................................................................................................21123.0023000000000000023000
.........................................................................................AGTAATA----CCTTTCGAACACATGC.............................................................................................................................................................................23123.0023000000000000023000
..................................................................................................................................ATGAGTTCGTCAGGTATTATAA.........................................................................................................................................22122.0022000000000000022000
...................................................................................................................................TGAGTTCGTCAGGTATTATCC.........................................................................................................................................21119.0019311500000000000000
.........................................................................................AGTAATA----CCTTTCGAACACATGG.............................................................................................................................................................................23116.0016012400000000000000
...................................................................................................................................TGAGTTCGTCAGGTATTATA..........................................................................................................................................20113.0013000000000000013000
.........................................................................................AGTAATA----CCTTTCGAACACATA..............................................................................................................................................................................22112.0012000000000000012000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAAAA.....................................................................................................................................25110.001000010011312001000
...................................................................................................................................TGAGTTCGTCAGGTATTATT..........................................................................................................................................20210.0020000000000000020000
...................................................................................................................................TGAGTTCGTCAGGTATTATAA.........................................................................................................................................21110.0010000000000000010000
...................................................................................................................................TGAGTTCGTCAGGTA...............................................................................................................................................15110.0010000000000010000000
...................................................................................................................................TGAGTTCGTCAGGTATTATCG.........................................................................................................................................2119.00903200010000003000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTTT.......................................................................................................................................2319.00903000000000006000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTTT.......................................................................................................................................2419.00904000000000005000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTATAA.....................................................................................................................................2519.00900000000100008000
....................................................................................................................................GAGTTCGTCAGGTATTATCT.........................................................................................................................................2019.00900005000000004000
..........................................................................................GTAATA----CCTTTCGAACACATGA.............................................................................................................................................................................2218.00800016010000000000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAC.......................................................................................................................................2318.00803100000002002000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAG.......................................................................................................................................2317.00701001000000005000
......................................................................................................................................GTTCGTCAGGTATTATCT.........................................................................................................................................1816.00600000000006000000
.............................................................................................ATA----CCTTTCGAACACATG..............................................................................................................................................................................1816.00600000010005000000
..........................................................................................GTAATA----CCTTTCGAACACATG..............................................................................................................................................................................2116.00600002003000001000
...................................................................................................................................TGAGTTCGTCAGGTATTAA...........................................................................................................................................1915.00500000000000005000
..................................................................................................................................ATGAGTTCGTCAGGT................................................................................................................................................1515.00500000000004001000
..................................................................................................................................ATGAGTTCGTCAGGTA...............................................................................................................................................1615.00500000000005000000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTATA......................................................................................................................................2414.00400000000000004000
.................................................................................................................................CATGAGTTCGTCAGGTATTATC..........................................................................................................................................2214.00400000000000004000
.........................................................................................AGTAATA----CCTTTCGAACACAA...............................................................................................................................................................................2114.00400000000001003000
.........................................................................................AGTAATA----CCTTTCGAACACATGTAA...........................................................................................................................................................................2513.00300000000000003000
.................................................................................................................................CATGAGTTCGTCAGGTATTATCT.........................................................................................................................................2313.00300000000000003000
............................................................................................AATA----CCTTTCGAACACATGA.............................................................................................................................................................................2013.00300000000002001000
.........................................................................................AGTAATA----CCTTTCGAACACATGCA............................................................................................................................................................................2413.00300000000000003000
..........................................................................................GTAATA----CCTTTCGAACACATGAT............................................................................................................................................................................2313.00301002000000000000
...........................................................................................TAATA----CCTTTCGAACACATGA.............................................................................................................................................................................2113.00300001000000002000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTG........................................................................................................................................2213.00301200000000000000
.........................................................................................AGTAATA----CCTTTCGAACACATGACA...........................................................................................................................................................................2513.00300000000000003000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTAA.......................................................................................................................................2413.00302000000000001000
...................................................................................................................................TGAGTTCGTCAGGTATTTA...........................................................................................................................................1922.50500000000000005000
.....................................................................................................................................AGTTCGTCAGGTATTATCT.........................................................................................................................................1912.00200101000000000000
.........................................................................................AGTAATA----CCTTTCGAACACATGAAC...........................................................................................................................................................................2512.00200200000000000000
.........................................................................................AGTAATA----CCTTTCGAA....................................................................................................................................................................................1612.00200000000001001000
....................................................................................................................................GAGTTCGTCAGGTATTATC..........................................................................................................................................1912.00200001000001000000
.........................................................................................AGTAATA----CCTTTCGAACACATGTA............................................................................................................................................................................2412.00200000000000002000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCAT........................................................................................................................................2312.00200000000000002000
...................................................................................................................................TGAGTTCGTCAGGTATTATTA.........................................................................................................................................2122.00400000000000004000
....................................................................................................CCTTTCGAACACATGA.............................................................................................................................................................................1612.00200000000002000000
..........................................................................................GTAATA----CCTTTCGAACACAT...............................................................................................................................................................................2012.00200001000000001000
...................................................................................................................................TGAGTTCGTCAGGTATT.............................................................................................................................................1712.00200000000002000000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTC........................................................................................................................................2312.00200100000000001000
..................................................................................................................................ATGAGTTCGTCAGGTATTTA...........................................................................................................................................2012.00200000000000002000
.........................................................................................AGTAATA----CCTTTCGAACACATT..............................................................................................................................................................................2212.00202000000000000000
...................................................................................................................................TGAGTTCGTCAGGTATTAAA..........................................................................................................................................2012.00200000000000002000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTG........................................................................................................................................2312.00200000000001001000
..................................................................................................................................ATGAGTTCGTCAGGTATAT............................................................................................................................................1912.00200000000000002000
....................................................................................................................................GAGTTCGTCAGGTATTATCTA........................................................................................................................................2112.00200001000000001000
............................................................................................AATA----CCTTTCGAACACATG..............................................................................................................................................................................1912.00200000000002000000
.........................................................................................AGTAATA----CCTTTCGAACACATGATT...........................................................................................................................................................................2512.00200000000000002000
.............................................................................................ATA----CCTTTCGAACACATGA.............................................................................................................................................................................1912.00200011000000000000
.........................................................................................AGTAATA----CCTTTCGAACACATGAG............................................................................................................................................................................2412.00200000000001001000
.........................................................................................AGTAATA----CCTTTCGAACACATGTAG...........................................................................................................................................................................2512.00200000000000002000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTAAA......................................................................................................................................2512.00200100010000000000
.........................................................................................AGTAATA----CCTTTCGAACACATGATA...........................................................................................................................................................................2512.00200000001000001000
.........................................................................................AGTAATA----CCTTTCGAACACATGAC............................................................................................................................................................................2412.00202000000000000000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTTA.......................................................................................................................................2321.50301000000001001000
..................................................................................................................................ATGAGTTCGTCAGGTATTATTC.........................................................................................................................................2211.00100100000000000000
...................................................................................................................................TGAGTTCGTCAGGTATTATCAT........................................................................................................................................2211.00100000000000001000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTTA.......................................................................................................................................2411.00100000000000001000
....................................................................................................................TTTTCAG-TCATTCATGAGTTCGTCAGG.................................................................................................................................................2711.00100000000100000000
..................................................................................................................................ATGAGTTCGTCAGGTATTG............................................................................................................................................1911.00100000000000001000
........................................................................................................................................TCGTCAGGTATTATCT.........................................................................................................................................1611.00100000000001000000
...........................................................................................TAATA----CCTTTCGAACACATGAT............................................................................................................................................................................2211.00100000000000001000
....................................................................................................................................GAGTTCGTCAGGTATTATCTT........................................................................................................................................2111.00100000000000001000
.........................................................................................AGTAATA----CCTTTCGAACACATGGA............................................................................................................................................................................2411.00100000000000001000
........................................................................................................................................TCGTCAGGTATTATCTA........................................................................................................................................1711.00100000000001000000
..................................................................................................................................ATGAGTTCGTCAGGTATTATCTAT.......................................................................................................................................2411.00100000000000001000
..................................................................................................................................ATGAGTTCGTCAGGTATTATG..........................................................................................................................................2111.00100000000000001000
...................................................................................................................................TGAGTTCGTCAGGTATTATCTAGT......................................................................................................................................2411.00100000010000000000
..........................................................................................GTAATA----CCTTTCGAACACATGAAAA..........................................................................................................................................................................2511.00100000000000001000
......................................................................................................................................GTTCGTCAGGTATTATCTAT.......................................................................................................................................2011.00100000000001000000
.........................................................................................AGTAATA----CCTTTCGAACACAAA..............................................................................................................................................................................2211.00100000000000001000
...............................................................................................A----CCTTTCGAACACATGA.............................................................................................................................................................................1711.00100000000001000000
droSec2
GAGTCGTCAACTCGG-TGAGTGAATG----TGAATGGCTTCTACTATCTACTTCATTGCTTTGCATATG---ATATGTTGCAGTAATTTAGTAATA----CCTTTCGAACATATGATTTTCAG-TCATTCATGAGTTCGTTAGGTATTATCTAGTTATTGTAAACATTCAA---CTCGCTGGCGGATGAGGAATTACTTGTGATGTACGATTCGAGCGTATTT---------------------------ATCTGT--------------------------GAATGGCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................................................TGAGTTCGTTAGGTATTATCT.........................................................................................................................................211361.00361832252330
...................................................................................................................................TGAGTTCGTTAGGTATTATCTA........................................................................................................................................221224.00224631341017
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAA.......................................................................................................................................23175.007555785
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAT.......................................................................................................................................23171.007166410
..................................................................................................................................ATGAGTTCGTTAGGTATTATCT.........................................................................................................................................22165.0065105122
...................................................................................................................................TGAGTTCGTTAGGTATTATC..........................................................................................................................................20132.003212614
.........................................................................................AGTAATA----CCTTTCGAACATATG..............................................................................................................................................................................22132.003225610
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAAA......................................................................................................................................24126.002651830
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAG.......................................................................................................................................23123.002302201
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAGT......................................................................................................................................24119.00199505
.........................................................................................AGTAATA----CCTTTCGAACATATGA.............................................................................................................................................................................23118.001818000
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAAAA.....................................................................................................................................25114.001411210
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAC.......................................................................................................................................23114.001411210
..................................................................................................................................ATGAGTTCGTTAGGTATTATC..........................................................................................................................................21112.00121812
.........................................................................................AGTAATA----CCTTTCGAACATAT...............................................................................................................................................................................2116.0061401
...................................................................................................................................TGAGTTCGTTAGGTATTATCTATA......................................................................................................................................2415.0050500
....................................................................................................................................GAGTTCGTTAGGTATTATCT.........................................................................................................................................2015.0055000
.......................................................................................TTAGTAATA----CCTTTCGAACATA................................................................................................................................................................................2215.0054100
..................................................................................................................................ATGAGTTCGTTAGGTATTAT...........................................................................................................................................2014.0040400
.....................................................................................................................................AGTTCGTTAGGTATTATCTAG.......................................................................................................................................2113.0030300
....................................................................................................................................GAGTTCGTTAGGTATTATCTAT.......................................................................................................................................2213.0032100
...................................................................................................................................TGAGTTCGTTAGGTATTAT...........................................................................................................................................1913.0030210
.....................................................................................................................................AGTTCGTTAGGTATTATCTAGT......................................................................................................................................2213.0031200
........................................................................................TAGTAATA----CCTTTCGAACATAT...............................................................................................................................................................................2213.0033000
..................................................................................................................................ATGAGTTCGTTAGGTATTATCTAA.......................................................................................................................................2412.0020200
....................................................................................................................................GAGTTCGTTAGGTATTATCTAG.......................................................................................................................................2212.0021100
..........................................................................................GTAATA----CCTTTCGAACATATG..............................................................................................................................................................................2112.0022000
.........................................................................................AGTAATA----CCTTTCGAACATATGT.............................................................................................................................................................................2312.0020200
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAGA......................................................................................................................................2411.0010100
..........................................................................................GTAATA----CCTTTCGAACATAT...............................................................................................................................................................................2011.0011000
...................................................................................................................................TGAGTTCGTTAGGTATTATCTATC......................................................................................................................................2411.0010100
..................................................................................................................................ATGAGTTCGTTAGGTATTATCTT........................................................................................................................................2311.0010100
...................................................................................................................................TGAGTTCGTTAGGTATTAA...........................................................................................................................................1911.0010100
.......................................................................................TTAGTAATA----CCTTTCGAACAT.................................................................................................................................................................................2111.0010001
.........................................................................................AGTAATA----CCTTTCGAACATA................................................................................................................................................................................2011.0011000
.......................................................................................TTAGTAATA----CCTTTCGAACA..................................................................................................................................................................................2011.0011000
..................................................................................................................................ATGAGTTCGTTAGGTATTA............................................................................................................................................1911.0010001
...................................................................................................................................TGAGTTCGTTAGGTATTATCTGT.......................................................................................................................................2311.0010100
.....................................................................................................................................AGTTCGTTAGGTATTATCTAGG......................................................................................................................................2211.0011000
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAGTT.....................................................................................................................................2511.0010100
....................................................................................................................................GAGTTCGTTAGGTATTATCTA........................................................................................................................................2111.0011000
...................................................................................................................................TGAGTTCGTTAGGTATTATCTAGTA.....................................................................................................................................2511.0010100
dm3
TGC-------------------------------------------------------------ATATGCTATTATATTGCAATAATTAAATAATA----CGTTTCGAACTAATGATTTTCAGTTCATTCATTAGGTAGTTACGCATTATCTAGTTGTTGTAAACATTCAA---CTCGATGGCGGATGAGAAATTACTTATGATGTACCATTCTT--GTAATA---------------------------AACTGT--------------------------GTGTGTASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..........................................................................................ATAATA----CGTTTCGAACTAATGA.............................................................................................................................................................................22243492.5086985000000000011710000000119881330030000000056349616731828121923311675030000111000000000000000004235383501358014417101290044001113831719911006700080000000000000111564210109005342213910215632370401311443893130240500014130900084113051100010012311430520002510154000000222100000010001946197394319388489148382444349314744416135514300720912239215301616147144726571153636783179711693537151020160111669471113481183092074411273224908104407995161242557224969810333925835136288229617564796818336435914187345411656878530395444433203271219693394
..........................................................................................ATAATA----CGTTTCGAACTAATG..............................................................................................................................................................................21217263.50345270000000000050000000034231480000100000026933310393432646451115000000000000000000000002319183004401013126019101402018106304781412400013000010301000200068000000275063133883631623334221030020010401100167111130840000012849299100021601140000002140002004041015626774393209667667688288110011000030030141315214847100109414022118138365134752605231213105841117115206135144331671251159162322121974829213911215428042701731220219516783931015144332782517027711563461738104450130
..................................................................................................................................ATTAGGTAGTTACGCATTATCT.........................................................................................................................................22215955.5031911000001000001500000100223935132005000000003612663219548619111749381200000000000000000000000973601084110013019810460122620411234149011170100000000002000000000001412045295251115122950400000107000330300039080607100520688616882310060046122000007410300000014792147360711791351105176342120090000117040441125012033101000791222306832472324613201269542712144129081227164538662152134091225311642592443710976204186015572384391577520231357100231813157121010299040
..........................................................................................ATAATA----CGTTTCGAACTAAT...............................................................................................................................................................................20211806.0023612000000000004000000003111600200000000000001400100000200000000000000000000000001589110000002100100601600002100000200000600000000000020001613000000003300211270033000001403000210400211030305000000666530000060019000000110000000010111613393383615429680035000000001896190017322012425102413162913360863002512413627040911656453115109101265034162114171536171932061142461740173227015008037340513122062227120
..................................................................................................................................ATTAGGTAGTTACGCATTATC..........................................................................................................................................2123949.007898000001000000000000001200664000000000000200001111001015510000000000000000000000032010000100000100110060004000300000100070000000000000000450000000003420000133100000002000000000001300000000002018203661000600325000000060000000005343817134805031302000010000010019009170041260510159108011200131037185230516750133178110011807632200182912324911436132204710310193133411949116011365221286295430
..................................................................................................................................ATTAGGTAGTTACGCATTAT...........................................................................................................................................2021670.00334000000000000000000000100386001000000000000000100000100000000000000000000000000010010000200000000200400000000000001000300000000000000000000000000000100003000000000002200000000010100000000300103133800008402830000000000000005106108701000000100200000000000004005400000303005000402021085121519967192001654010143121631006012822931044822462210128442010312000003162800
..........................................................................................ATAATA----CGTTTCGAACTAATGAA............................................................................................................................................................................2321168.502337000000000002000000003001000000000000000002010000001632000000000000000000000001101030000000010060030020000000000500010100000000000000100000000350305010000430000000000042050002406000300000004508300003106000000024000100000119321027234329264612740058033000000010207500391001001010013000011000196006402731037000118800001642810700131758141828001224617700003821040704701220021200
..........................................................................................ATAATA----CGTTTCGAACTAATGATC...........................................................................................................................................................................242904.50180900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001285524000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATAATA----CGTTTCGAACTAA................................................................................................................................................................................192691.0013820000000000000000000000040000000000000100001000000000000000000000000000000000110100000000100000000000000000000000000000000000000000033000000000000000011000000000000000102000200000000000011301000020050000000000000010000210003201007005000000000110111036002007041083003011000240231212110091922011000000100202002013690000109000001322200117200
...........................................................................................TAATA----CGTTTCGAACTAATGA.............................................................................................................................................................................212528.001056000000000000000000006003000000000000101000200000103000000000000000000000000000000000000000000300000000000030001000000000000000000000000000000000010001030010000400000000000000000000000000626000060200000002000000000003814041257322200400000000000000001000100401301700200000032057292800004030001922100220340140205622901001101001010411100031100
...................................................................................................................................TTAGGTAGTTACGCATTATCT.........................................................................................................................................212424.0084800001000000610000000701155000000000000000000010001000100000000000000000000000052120000401101010450117000203016522022200800000000000000000000000000000000000000000000000000000000110002000000005400250000440200000001100000000024122301010001000000000000000002003000000100001900300010023023100300001270000200300030202010024032000032000000010000001200
..........................................................................................ATAATA----CGTTTCGAACTAATGT.............................................................................................................................................................................222369.507390000000000000000000000030000000000001000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000101201000000000000000000101000000000001502100001101300000012000000000111710100001000000000000001000310220000010000151000000000610132070011268000063720002037291500077320000187100000020000200310
..........................................................................................ATAATA----CGTTTCGAACTAATGAAA...........................................................................................................................................................................242312.506250000000000000000000010100000000000001001000000010001000000000000000000000000000000000000000002001000002000000030002000020002000000000000000221000010000040000000000001002002143300050000005180430000603700000007000000000102903101237171335810001331200000000000120050000000000000000000002700230010000100005605200030100130012106000010000000120200000000
...........................................................................................TAATA----CGTTTCGAACTAATGAT............................................................................................................................................................................222167.0033400000000000000000000000000000000000000000000001000000000000000000000000000000001000000000000010000000000000000000180000000000000000000000000010010000000000000000000000000000000000000000060300000000000000000000000000141001010031000100000000001010020000001001090000000000410181300001530000010000100010000000167000127000100010000000200
..................................................................................................................................ATTAGGTAGTTACGCATTATCTA........................................................................................................................................232130.0026000000020001700000000500290000000000010000000000000010000000000000000000000000000003000100001002610700440100100201800190000000000000000100000000010000000010000000000000000000001000001000000040200008090000000300000000000450010110000000000000000000010000000000000000000100001300127250000100008000000003000000002100000000000000000000000
..........................................................................................ATAATA----CGTTTCGAACTAATA..............................................................................................................................................................................212123.0024600000000000200000000000110000000000000000000000000000000000000000000000000000000000000000000002001000000000000010002000000000000000000000000000000000000000000000000000000000102000000000003101900001901200000000000000000011020030001000000000000000001100110000001010020000000000103150000002800000240001000705170000017000040000010110000000200
...........................................................................................TAATA----CGTTTCGAACTAATG..............................................................................................................................................................................202109.50219000000000000001000000003000000000000002000000000000000000000000000000000000000000000000010000200000100000000000000000000000000000001000000010000000000000000200000000000000010000000000000002000020100000000000000000007103000012000000000000000000002100000100005010000000010004110000930000000000000000100000148000023000000000000010100
...................................................................................................................................TTAGGTAGTTACGCATTATC..........................................................................................................................................202103.5020700000000000000000000000280000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001401400008011000000000000000000019200000000000000000000000000000100000100008000000000000000030000250000100000010010200021130000027010001000000001100
..........................................................................................ATAATA----CGTTTCGAACTAATGAAAA..........................................................................................................................................................................25298.501970000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000030000000000000000000000101000400000000000001511400003018000000310000000000131011104752200003000000000000110090000000000000000000004400310010000000008030000000006300013100000000001040000000100
..........................................................................................ATAATA----CGTTTCGAACTAATGC.............................................................................................................................................................................22296.501930000000000000000000000000000000000000000003000000030000000000000000000000000000000000000000000000000001000000000000000000000000100000000000000000000000101000000000000000000100000000000000000000000000000000000000000031000000001000000000000000030011001002000010000000000500747113000147000033010031316011010201900002000000000000000000
..........................................................................................ATAATA----CGTTTCGAACTAAG...............................................................................................................................................................................20295.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000100000000000000000000018300000000000000000000000300001000000000000000000
..................................................................................................................................ATTAGGTAGTTACGCATTA............................................................................................................................................19289.0017800000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003015000070230000000000000000000610010000000000000000000000000110000000000100301000001001511000046000030000000004321000114000018000000000000000100
..........................................................................................ATAATA----CGTTTCGAACTAATT..............................................................................................................................................................................21281.501630000000000000000000000000010000000000000010000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000010000000000000000000010001020020007001201202000000000000002010000101000010000000000001000001000008000000000000001100
..........................................................................................ATAATA----CGTTTCGAACTA.................................................................................................................................................................................18278.501570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000022330000000000000000000000000000000000010000000000000000000100000000000000000000000000151000100000000000000000000000000000000010040010000000401030100005700002000000100201001010100000000000000000000100
..........................................................................................ATAATA----CGTTTCGAACTAATGG.............................................................................................................................................................................22254.00108000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000002100000000200100000000000000002000000000001001000000040001707000031000021110001000001000031700008000000000000000100
..........................................................................................ATAATA----CGTTTCGAACTAATGAT............................................................................................................................................................................23249.0098000000000000000000002001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000102000010100000002000000000002002120002000011700000000000000000000000000100000000002014121400002200000000000001000000031400002000000010000000000
..........................................................................................ATAATA----CGTTTCGAACTAATC..............................................................................................................................................................................21248.009600000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000020100200000000001020610000045000000000000101001000002600002000000000000000000
..................................................................................................................................ATTAGGTAGTTACGCATTATCTATC......................................................................................................................................25246.009200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................ATAATA----CGTTTCGAACTAAA...............................................................................................................................................................................20239.007800000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000040100000010000000000000000000300000000010000000000000000100100000000000100100000000000300000026000000000000000000000002500005000000000000001100
..........................................................................................ATAATA----CGTTTCGAACTAATGAG............................................................................................................................................................................23235.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000070100000000000000000000000000000000000000000102000000300000000000000000001010000002000000000000000000000000000000001000000000020009000000100004101000301103700014400004000003000000000000
...........................................................................................TAATA----CGTTTCGAACTAAT...............................................................................................................................................................................19232.50650000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000010000000001000000000000000000000001000010030000000000000011000004300000000000000001000001300005000000000000000000
..................................................................................................................................ATTAGGTAGTTACGCATTATCC.........................................................................................................................................22232.006400000000000100000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000011020000201000000000000000000070000000001000000000000000000000000000000010010000000100060100001700000000001001100000000200004000000000000000000
..................................................................................................................................ATTAGGTAGTTACGCATTATA..........................................................................................................................................21230.006000000000000300000000000140000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000001000000000000000000000000000000000001000000000000000002020000007000000000000000000010000000000000000000000000000000000000000000000000000100130000001700000000000000100100101100000000000000000000000
..................................................................................................................................ATTAGGTAGTTACGCATT.............................................................................................................................................18228.505700000000000000000000100300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000001030000000020000000000000000000151000000000000000000000000000001000000000010000000000000000000002000004010000000101000000000000000000000000000000
..........................................................................................ATAATA----CGTTTCGAACTAATGAAC...........................................................................................................................................................................24228.50570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000459000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000
.........................................................................................AATAATA----CGTTTCGAACTAATG..............................................................................................................................................................................22225.50510000000000000000000010000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000200010000000000000000000000000000000040000000001500060000001500002000000000000100000400003000000010000000100
..................................................................................................................................ATTAGGTAGTTACGCATTATCA.........................................................................................................................................22223.00460000000000000000000000015000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000206000000700000000000000000004000000000000010000000000000000000000000001000000000000001000000400000020000000000000000100000000000000000000000
...................................................................................................................................TTAGGTAGTTACGCATTAT...........................................................................................................................................19223.00460000000000000000000000040000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004060000007000000000000000000010000000000000000000000000000001000001000030100000000000000000001000000000000000000100000400001000000010000000000
.........................................................................................AATAATA----CGTTTCGAACTAAT...............................................................................................................................................................................21221.50430000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000102000000000000000000000000000001000010000000000000020000002400000200000000000000000500003000000000000000000
.........................................................................................AATAATA----CGTTTCGAACTAATGA.............................................................................................................................................................................23220.00400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000110201110000000000000000000000000000000010000000000000230000001600000200000100001000000300001000000000000000100
..........................................................................................ATAATA----CGTTTCGAACTAATGAC............................................................................................................................................................................23219.5039000000000000000000000000000000000000000000100000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000004000010001000085000000000000000100000000000000000000020002000000400002000000001000000001300000000000000000000000
...........................................................................................TAATA----CGTTTCGAACTAATGAA............................................................................................................................................................................22219.5039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000104000010100000010000000000006001010212000000000000000002000000000000001000000000000013010000100001100000000100000000100001000000010100000000
...................................................................................................................................TTAGGTAGTTACGCATTATCTA........................................................................................................................................22216.0032000000000003100000000002000000000000000000000000100000000000000000000000000000000000000000100500300010000000006000100000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000102000000000000010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
droEre2
GAGTCTTGTAAATGTACAAACAAATCTCAGTGTATAGCTTAA---ATCCACCGGAATT------GTGTGATATTATGTTACAGTGATTTAATAATT----CGATTCGAAGTTATGTGCTTTAA-TCATTCATAAATGCGAAACGGATTATTAAGTTATTGTTAACATTCAA---CTCGTTGGCGTGTGAGAAATTGCTCATGATATGCGATTCGGAACCATTCACTGCTGTTTTTC----------AATTTTCAGTGAAT-G------------ATATC---GAATGGCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................................................AATGCGAAACGGATTATTAAG.......................................................................................................................................2113196.00319622013228523070
.....................................................................................................................................AATGCGAAACGGATTATTAAGT......................................................................................................................................2212871.00287128481325472710
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTG..............................................................2212215.00221582219219951150
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACT...............................................................211622.0062222240538560
.....................................................................................................................................AATGCGAAACGGATTATTAAGTT.....................................................................................................................................231139.001390000128110
.....................................................................................................................................AATGCGAAACGGATTATTAA........................................................................................................................................202127.502553020223270
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCAC................................................................20173.007330106720
.....................................................................................................................................AATGCGAAACGGATTATTAAGTA.....................................................................................................................................23160.006000105360
...................................................................................................................................TAAATGCGAAACGGATTATTAA........................................................................................................................................22148.004800004080
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGT.............................................................23147.004730004310
.....................................................................................................................................AATGCGAAACGGATTATTAAGA......................................................................................................................................22144.0044000034100
....................................................................................................................................AAATGCGAAACGGATTATTAAG.......................................................................................................................................22141.004110013450
...................................................................................................................................TAAATGCGAAACGGATTATTAAG.......................................................................................................................................23137.003700103150
.......................................................................................TTAATAATT----CGATTCGAAGTTA................................................................................................................................................................................22132.003231002620
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCA.................................................................19131.003100002830
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTA..............................................................22122.002200102100
......................................................................................................................................ATGCGAAACGGATTATTAAGT......................................................................................................................................21121.002120001900
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGA.............................................................23115.001500001410
...................................................................................................................................TAAATGCGAAACGGATTATTAAA.......................................................................................................................................23213.002600002060
......................................................................................................................................ATGCGAAACGGATTATTAAG.......................................................................................................................................20112.00122000820
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTT..............................................................22111.00111000910
.....................................................................................................................................AATGCGAAACGGATTATTAAGTTA....................................................................................................................................2417.0070000610
..............................................................................................................................................................................................................GCGATTCGGAACCATTCACTG..............................................................2115.0054000100
.....................................................................................................................................AATGCGAAACGGATTATTAAGTTT....................................................................................................................................2415.0050010220
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCAA................................................................2015.0050000410
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACA...............................................................2115.0050000410
.....................................................................................................................................AATGCGAAACGGATTATTA.........................................................................................................................................1924.0081000610
...................................................................................................................................TAAATGCGAAACGGATTATTA.........................................................................................................................................2114.0040000400
.....................................................................................................................................AATGCGAAACGGATTATT..........................................................................................................................................1823.5071000060
.....................................................................................................................................AATGCGAAACGGATTATTAAGC......................................................................................................................................2223.0060000510
.....................................................................................................................................AATGCGAAACGGATTATTAAGTC.....................................................................................................................................2313.0030000210
...................................................................................................................................TAAATGCGAAACGGATTATT..........................................................................................................................................2013.0031000110
....................................................................................................................................AAATGCGAAACGGATTATTAA........................................................................................................................................2122.5050000410
...............................................................................................................................................................................................................CGATTCGGAACCATTCACTG..............................................................2012.0021000100
....................................................................................................................................AAATGCGAAACGGATTATTAAGT......................................................................................................................................2312.0020000110
................................................................................................................................................................................................................GATTCGGAACCATTCACTG..............................................................1912.0021000100
...................................................................................................................................TAAATGCGAAACGGATTATTAAGT......................................................................................................................................2412.0020000200
.......................................................................................................................................TGCGAAACGGATTATTAAG.......................................................................................................................................1912.0020000200
.......................................................................................................................................TGCGAAACGGATTATTAAGT......................................................................................................................................2012.0020000200
.....................................................................................................................................AATGCGAAACGGATTATTAAGTTAA...................................................................................................................................2512.0020000200
........................................................................................................................................GCGAAACGGATTATTAAG.......................................................................................................................................1812.0020000200
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTAA.............................................................2312.0020000200
.....................................................................................................................................AATGCGAAACGGATTATTAAGTG.....................................................................................................................................2312.0020000110
.....................................................................................................................................AATGCGAAACGGATTATTAAT.......................................................................................................................................2121.5030000120
...................................................................................................................................TAAATGCGAAACGGATTATTAAAA......................................................................................................................................2421.5030000210
.....................................................................................................................................AATGCGAAACGGATTATTAAGAA.....................................................................................................................................2311.0010000010
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCAAA...............................................................2111.0010000100
.....................................................................................................................................AATGCGAAACGGATTATTAAGTTAAA..................................................................................................................................2611.0010000100
...............................................................................................................................................................................................................CGATTCGGAACCATTCACT...............................................................1911.0010000010
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGTAA...........................................................2511.0010000100
...............................................................................................................................................................................................................CGATTCGGAACCATTCACTA..............................................................2011.0010000100
.....................................................................................................................................AATGCGAAACGGATTATTAAGTAC....................................................................................................................................2411.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGC.............................................................2311.0010000100
...................................................................................................................................TAAATGCGAAACGGATTATTAAAAA.....................................................................................................................................2521.0020000200
.......................................................................................TTAATAATT----CGATTCGAAGTTATGTGCTT.........................................................................................................................................................................2911.0011000000
.........................................................................................AATAATT----CGATTCGAAGTT.................................................................................................................................................................................1911.0011000000
.....................................................................................................................................AATGCGAAACGGATTATTAAGTTAT...................................................................................................................................2511.0010000100
...................................................................................................................................TAAATGCGAAACGGATTATTAAGA......................................................................................................................................2411.0010000100
.....................................................................................................................................AATGCGAAACGGATTATTAAGTAT....................................................................................................................................2411.0010000100
.....................................................................................................................................AATGCGAAACGGATTATTT.........................................................................................................................................1921.0020000020
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGCT............................................................2411.0010000100
...................................................................................................................................TAAATGCGAAACGGATTATTAAT.......................................................................................................................................2311.0010000100
................................................................................................................................................................................................................GATTCGGAACCATTCACT...............................................................1811.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCT.................................................................1911.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTGTAT...........................................................2511.0010000100
.......................................................................................TTAATAATT----CGATTCGAAGTTAT...............................................................................................................................................................................2311.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTAT.............................................................2311.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACTTT.............................................................2311.0010000100
.......................................................................................TTAATAATT----CGATTCGAAGTTAA...............................................................................................................................................................................2311.0010000100
.............................................................................................................................................................................................................TGCGATTCGGAACCATTCACC...............................................................2111.0010000100
....................................................................................................................................AAATGCGAAACGGATTATTA.........................................................................................................................................2020.5010010000
.....................................................................................................................................AATGCGAAACGGATTATTAT........................................................................................................................................2020.5010000010
.....................................................................................................................................AATGCGAAACGGATTATTAGT.......................................................................................................................................2120.5010000100
.....................................................................................................................................AATGCGAAACGGATTATTAAC.......................................................................................................................................2120.5010000010
....................................................................................................................................AAATGCGAAACGGATTATT..........................................................................................................................................1920.5010000100
droEug1
TAGTAACCAACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GATTAGTTAAT-CGG-CTGTTAAACG----TGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
AATTCA--------G-CGAGGGTATG----T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
CATTCAATTACTTAAAAATATAAATA----TAAAATATACCTATAACAAATATTAT----TTACCCATC---AT-TGTTGCAATGATATTATAATCGGGGCCACTAAACTGTGTGCTTTCCAA-TCTAGTTTGGGAGCTTTGGTTATAACATCAATGTAA----CAATTGACTACAAATTAACAAATCAA--TTTATATGTG--------------GATATTCACAGCCACTATTTGTCATATAATTGTTACCAGGATAAGGGTTCCGTTTGGTACAACTGTGT---GCSizeHit CountTotal NormTotal
No Reads
droVir3
TAGTTC--------A-TGAATGATTG----CGA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
No Reads
droMoj3
GAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads

Generated: 10/20/2015 at 07:00 PM