ID:

dsi-mir-977

 Coordinate:

x:18342664-18342778 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

5pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.9 -33.3 -33.3

Flybase annnotation

utr5 [utr5_plus_15692]

No Repeatable elements found

Sense Strand Reads

CCGGTGCACTGCACTGCTGTCAACTTCGCGCAATGGAATACCAACTCCGGAGTGCCGAAAATGCATCCCAAGGTATGGTTTAGATAACTCGAATATCACATTTTCAGTGTTCGATATCTGATGAGATATTCACGTTGTCTAAACCATGGTTTGTTTTTGAAAACTACTCAGATCATATCATATGCCAACAAGAAACTACATAAAACTATAAACTT

*****************************************************************...((((.(((((((((((((((..(((((((.((...((((..........)))))).)))))))..))))))))))))))).))))....********************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001

Testis

 SRR902009

testis

 M024

male body		 O002

Head

 SRR553485

Chicharo_3 day-old ovaries

 SRR553487

NRT_0-2 hours eggs

 SRR553488

RT_0-2 hours eggs

 SRR553486

Makindu_3 day-old ovaries

 SRR618934

dsim w501 ovaries

 M053

female body

 M023

head
.........................................................................................................................TGAGATATTCACGTTGTCTAA......................................................................... 21 0 1 2553.00 2553 1954 557 2 31 1 2 2 2 1 1 0
.........................................................................................................................TGAGATATTCACGTTGTCTA.......................................................................... 20 0 1 577.00 577 392 167 1 8 1 2 1 4 1 0 0
.........................................................................................................................TGAGATATTCACGTTGTC............................................................................ 18 0 1 295.00 295 291 1 0 3 0 0 0 0 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTCTAA......................................................................... 22 0 1 275.00 275 181 64 13 11 2 0 3 0 1 0 0
.........................................................................................................................TGAGATATTCACGTTGTCT........................................................................... 19 0 1 218.00 218 168 42 0 4 2 0 0 0 2 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTAAA........................................................................ 22 0 1 217.00 217 23 102 7 0 28 18 23 14 1 1 0
.........................................................................................................................TGAGATATTCACGTTGTCTAAAC....................................................................... 23 0 1 183.00 183 179 0 0 4 0 0 0 0 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTCTA.......................................................................... 21 0 1 110.00 110 62 26 17 2 2 0 0 0 0 0 1
................................................................................TAGATAACTCGAATATCACATT................................................................................................................. 22 0 1 54.00 54 32 4 16 0 0 0 1 1 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTCTAAA........................................................................ 23 0 1 40.00 40 1 19 2 0 7 7 1 2 1 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTAAAA....................................................................... 23 1 1 33.00 33 0 8 0 0 2 14 6 3 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTCT........................................................................... 20 0 1 32.00 32 20 4 7 0 0 0 0 1 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTC............................................................................ 19 0 1 30.00 30 29 1 0 0 0 0 0 0 0 0 0
................................................................................TAGATAACTCGAATATCACAT.................................................................................................................. 21 0 1 28.00 28 25 3 0 0 0 0 0 0 0 0 0
................................................................................TAGATAACTCGAATATCACA................................................................................................................... 20 0 1 28.00 28 27 1 0 0 0 0 0 0 0 0 0
................................................................................TAGATAACTCGAATATCACATTTT............................................................................................................... 24 0 1 24.00 24 0 4 18 0 0 1 1 0 0 0 0
................................................................................TAGATAACTCGAATATCACATTT................................................................................................................ 23 0 1 17.00 17 10 2 3 1 0 0 0 1 0 0 0
..........................................................................................................................GAGATATTCACGTTGTCTAA......................................................................... 20 0 1 16.00 16 16 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGAGATATTCACGTTGT............................................................................. 18 0 1 15.00 15 15 0 0 0 0 0 0 0 0 0 0
................................................................................TAGATAACTCGAATATCACATTTTC.............................................................................................................. 25 0 1 13.00 13 7 1 4 0 1 0 0 0 0 0 0
................................................................................TAGATAACTCGAATATCAC.................................................................................................................... 19 0 1 13.00 13 13 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTAT......................................................................... 21 1 1 11.00 11 0 11 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAGATATTCACGTTGTCTA.......................................................................... 19 0 1 6.00 6 4 1 0 0 0 0 0 0 0 1 0
........................................................................................................................ATGAGATATTCACGTTGTCTAAAC....................................................................... 24 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTT.......................................................................... 20 1 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0
................................................................................TAGATAACTCGAATATCA..................................................................................................................... 18 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCA........................................................................... 19 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTAAAAA...................................................................... 24 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTAAAAAA..................................................................... 25 2 1 3.00 3 0 2 0 0 0 0 1 0 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTCTT.......................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAGATATTCACGTTGTCTAAAC....................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GAGATATTCACGTTGTCT........................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTAAT........................................................................ 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACTTTGTCTAA......................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.............................................................TGCATCCCAAGGTATGGTT....................................................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTCC........................................................................... 20 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTCTAAAA....................................................................... 24 1 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................AATGAGATATTCACGTTGTCTA.......................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTAAACC...................................................................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGATATATTCACGTTGTCTAA......................................................................... 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTCTAAACAA..................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTTT......................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGAGATGTTCACGTTGTCTAAA........................................................................ 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................TGAGATTTTCACGTTGTCTAA......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................GTGAGATATTCACGTTGTCTAAA........................................................................ 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTAACGTTGTCTAAA........................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................AGTGAGATATTCACGTTGTCTAAA........................................................................ 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAAATATTCACGTTGTCTAA......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGGTATTCACGTTGTCTAA......................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
........................................................................................................................ATGATATATTCACGTTGTCTAAA........................................................................ 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................TGAGATATTAACGTTGTCTAA......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................TTCAGTGTTCGATATCTGA.............................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGAGATATTCACGTTGCCTA.......................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.................................TGGAATACCAACTCCGGAGTG................................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
........................................................................................................................AAGAGATATTCACGTTGTCTAA......................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTAACA....................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATACACGTTGTCTAA......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................ATAATGAGATATTCACGTTGTC............................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTAAG........................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGCTGTCTA.......................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTAG......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGGGATATTCACGTTGTCTAAA........................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................TGAGATATTCACGTT............................................................................... 15 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
................................................................................TAGATAACCCGAATATCACATTTT............................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCGAA......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCTACA........................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TGGTTTGTTTTTGAAAACTACTCAGA........................................... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................TGATATATTCACGTTGTCTAAA........................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................TGAGATATTCACGTTGACTAAAA....................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTCG........................................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTCAAA......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................ATGAGATATTCACGTTGTA............................................................................ 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACGTTGTTTA.......................................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACTTTGTCTA.......................................................................... 20 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................TGAGATATTCACATTGTCTAAAAA...................................................................... 24 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
........................................................................................................CAGTGATCGATATCGGAT............................................................................................. 18 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................TACTCAGATCATTTCA................................... 16 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................CACGCTGTCTCAACCATGA.................................................................. 19 3 9 0.22 2 0 0 0 0 0 2 0 0 0 0 0
...............................................................................................................................ATTCACGGTGTCGGAACCA..................................................................... 19 3 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................CGATATCTGATTAGCTA....................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................TGGATTGTTTTTGAAA..................................................... 16 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

GGCCACGTGACGTGACGACAGTTGAAGCGCGTTACCTTATGGTTGAGGCCTCACGGCTTTTACGTAGGGTTCCATACCAAATCTATTGAGCTTATAGTGTAAAAGTCACAAGCTATAGACTACTCTATAAGTGCAACAGATTTGGTACCAAACAAAAACTTTTGATGAGTCTAGTATAGTATACGGTTGTTCTTTGATGTATTTTGATATTTGAA

**********************************************************...((((.(((((((((((((((..(((((((.((...((((..........)))))).)))))))..))))))))))))))).))))....***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023

head

 SRR553486

Makindu_3 day-old ovaries

 SRR553485

Chicharo_3 day-old ovaries

 SRR553488

RT_0-2 hours eggs
...........................................................................................................................CCTATAAGTGCAACAGATTT........................................................................ 20 1 1 1.00 1 1 0 0 0
...............................................................................................................................TAAGTGCAACAGGCATGGT..................................................................... 19 3 6 0.17 1 0 1 0 0
................................................................................................................................AAGTGCAACTGATTT........................................................................ 15 1 11 0.09 1 0 0 1 0
GGCCACGTCACGTGA........................................................................................................................................................................................................ 15 1 13 0.08 1 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 x:18342614-18342828 + dsi-mir-977 Known_mirbase CCGGTGCACTGCACT-GCT--GTCAAC-TTCG---------------------------------------------------------------CGCAATGGAATAC----------------------------------------------------------------------------------------------------------------CAACTCCGGAGTG-CCGAAAATGCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATTTTC-------A--GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTTTGAAA--------------------------------ACTACTCAGATCATATCATATGCCAACAAGAAAC-----TACATAAAACTATAAACTT
droSec2 scaffold_8:1735318-1735528 + dse_82 confident CCGGTGCACTGCAGC-T----GTCAAC-TTCG---------------------------------------------------------------CGCAATGGAATAC----------------------------------------------------------------------------------------------------------------CAACTCCGGAGTG-CCGAAAATTCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATCTTC-------A--GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTT--GAAA--------------------------------ACTACTCAGATCATATCACATACCAACAAGAAAC-----TACATAAAACTACAAACTT
dm3 chrX:19453008-19453215 + dme-mir-977 Known_mirbase CCGGTGCACTGCACC-T----AACAAC-ATCG---------------------------------------------------------------CGCCGGGGAATCCCAA---------------------------------------------------------------------------CACAAC-----GAATCAAC----------------------------------------AAACAAGGTATGCTTTAGATAACTCGAATATC-AC--ATCTTC-------A--GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTGTAC--GAAACT------------------------------ACAACTAAGATT---TCATATAGCAACAAAAAACTGCAATACATACAACTATAAACTT
droEre2 scaffold_4690:9688986-9689217 + der_172 confident CCGGAGCATGGCACC-T----ACGAAC-TGAGC----AT----------------------------TT----------------------------------------------------------------------------------------------------------GGGGATCGGGATCCCGGATTCGGAGTCAACAAACTCTTGTCAAACA--------AACG-AGCAGAATTCAACCCAAGGTATGGCCTAGATAACTCGGGTATC-AC--ATCTTT-------A-TGCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTAA--GAAATAACGCCTTAACTCGGTCTGCAGCTCAAATAA-----------------------------------------------ACTTGGTGTTC
droYak3 X:11885591-11885829 - dya_61 confident CCGGAGCACTGCACC-T----ACCAAC-TTCGC----AC-----------------------------------------------------------GGT----------------------------TCCTA---TTCCTATTC-------CGATTCCGA-------------------------------TTCGGAATCAAC---------------CAAGTGCGGACAG-CTCAGAGTTCACCCCAAGGTATGGCCTAGATAACACGGGTATC-AC--ATCTTT-------A-TGCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTGTAA--GGAAAT--G--------CACTCTGCTCATCAGTTAAACTACTAAGATT---TCATATACCAACAAGGAA-------------------------
droEug1 scf7180000409230:879528-879690 - ACTGAGCCCTGTAAT-G----ACCAAC-GTACC----AT----------------------------ATCTTT------------------------------------------------------------A---TATCCATAT-------CCATGTCCAGTGGAAATCTACAGGCC--------------------------------------------------------------ACCAACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGC--ATTTGC----------ATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGAATTCAAGCCTTG---------------------------------------------------------------------------------------------------
droBia1 scf7180000302069:1150848-1151048 - GCGGAGTGCTGCACC-G----ACCAAC-GCCAC----AT----------------------------ACGGTG-----------------------------GGATCCCCAACG-----TCGCAGTGGGTCCTATG-------TTC-------CAGTACTAG-------------------------------TCCA--------------------------------GACC-TACCCAATTCACACCAAGGCCTGGCCTCGATCACGCGGGTATC-GC--ATCT------------GCAACTGATATCTGATGAGATA-TTCACGTCTTCGAAACCAAGCCTTGGCCACGAAT--------------------------------TTGGCTTAAATC----------------------------------------------
droTak1 scf7180000415169:844671-844850 - GCGGAGCGCTGCACT-G----ACCAAC-TGTTCGTCCAT----------------------------AAGGTG-----------------------------AGAT----------------------------------------------------------------CTAATGGGTATCGTATTG----------------T----------C----TAATTATTGAATC-TTGCTAGTTAACCCCAAGGTCTGGCCTCGATCACGCGGATATC-GC--ATCT------------GCAATTGATATCTGGTGAGATA-TTCACGTCGTCGAAACCATGCCTTGGCCTCGAA-------------------------------------------------------------------------------------------
droEle1 scf7180000490751:1118861-1119001 + GCGGAGCCCTGCACT-G----ACCAGC-AGACCGAC-AG----------------------------ATCGT-------------------------------------GA--------------------------T-------C------------------------------------------CA----------------------------------------------TCCATTCCCCTCCAAGGTATGGACTCGATCACGCGAGTATC-GC--ACCTTC-------C-TGCAATCGATAATCGGTGAGATA-TTCACGTCGTCGAATCCATGTCTTG---------------------------------------------------------------------------------------------------
droRho1 scf7180000761121:189948-190133 - GCGGAGCGGTGCACT-G----ACCAGC-AGACTGACCTCTCCGCTAGCACCAGATCCCAAATCTTAGATCCC-------------------------------------GA--------------------------C-------C--------CA------------------------------------------------T---------------CCACTGCCAGCAT-CATCCATTCCACACCAAGGTCTGGCCTCGATCACGCGAGTATC-GC--ACCTTC-------C-TGCAATCGATATTCGGTGAGATA-TTCACGTCGTCGAAGCCGTGCCTTG---------------------------------------------------------------------------------------------------
droFic1 scf7180000454073:1733988-1734162 + GTGGAGTGCCGCACC-G----ACCACC-ACATT----TT----------------------------TT--------------------------TCTA--------------------------------------------------------------------------------------------AG-----T-------------------------GCCTAATTC-CCGCAAGTCCAATCCAACATCCGATTTCGACCACGTGGGTATC-ACTCACCTTT------CCGCTCATTTGATATCGGGTGAGATA-TTCACGTCGTTGAATCCGTGTCTTGGAA--A-----------------------------------GGAGTTTATGTTATATAATA--------------------------------------
droKik1 scf7180000302517:1183757-1183942 + GCGGAGCATTGCACC-T----ACT-CCAGCAAC----GG----------------------------CTATCC---AGGTAACCAGCTAAACAGC--------------TA--------------------------C-------CCATCTACTCAGCT-----------CCTCTGGGAGTCGAGGCTCTAGA-----TGCAAAC----------------------------------------CTCCATGGCACGGTCTGGATTACGAGAATATC-GC--ACCTTT-------GACGCCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAGTCCGTG--------------------------------------------------------------------------------------------------------
droAna3 scaffold_13417:2467393-2467590 - dan_36 confident GCGAAGCGAGTCCTAC-CCCCACA-CCAG--------------------------------------CGAGGC---A------------------------------------------------------------------------------------------------------------------CA-----CGCGTAC----------------------------------------CGCCGAGGTTCGGCCTCGATCACGAGAACGTC-GC--ATCTTA-------G-TTACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCGGCTTGGCCA--------------------------------CCAATCGCAAGCATACCTAGTACCGGAAGTACA-TATCTTGCATAACAATACACATCT
droBip1 scf7180000395874:39824-39955 - GCGAAGCGAGTCCTTC-CTCCACA-CCAG--------------------------------------CTACCC---A------------------------------------------------------------------------------------------------------------------AA-----CGCATAC----------------------------------------CGCTGAGGTCCGGCCTCGATCACGAGAACGTC-GC--ATCTTA-------G-TTACGTTTTCATATGATGAGATA-TTCACGTCGTCGAAACCGTGCCTCG---------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:7956865-7957030 + dwi_60 confident GCGAAGTGTTT--GT-G----AGCAAT-ATCGT----AT----------------------------ATTGTGCGTGCAGTGTATTGTGATGTGACACCGTGGACGAT----------------------------------------------------------------------------------------------------------------CAA-------------CAAAATTC------ATATACAATTTCAATAACGTAGATATC-GC--ATCGTTTTTTTTTACCATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTG--------------------------------------------------------------------------------------------------------
droVir3 scaffold_13042:906586-906753 - dvi-mir-977 Known_mirbase CCGATGCGCTGTACC-A----GCA-ACAACAAC----AG----------------------------G---------AATAGCAACGGAAACAGG--------AACCGGAA-CAGAAACAGGAAAAAGAAATTGTGTT-------C------------------------------------------CC----------------------------------------------CCTGGCC-------CAGCCCAGTTGCGATTGCGCGGACATC-TC--ATCGTA-------TAAACATTCGATAACCAACGAGATA-TTCACGTTATCGAGAC------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6328:2900856-2901003 - dmo_3175 TCGATGCGCTGTATC-A----GCA-ACAACAAC----AA----------------------------C--AT-------------------------------------------------------------------------------------------------------------------------------------------GAGTTAAACGAAATG-AACCAGTTCGTTGTTCTGGCC--CAGCCCGGTTCCGATTGCGCGGACATC-TC--ATCGTC-------TGACCATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCG--------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCGGTGCACTGCACT-GCT--GTCAAC-TTCG---------------------------------------------------------------CGCAATGGAATAC----------------------------------------------------------------------------------------------------------------CAACTCCGGAGTG-CCGAAAATGCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATTTTC-------A--GTGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTTTGAAA--------------------------------ACTACTCAGATCATATCATATGCCAACAAGAAAC-----TACATAAAACTATAAACTTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA..............................................................................................................2112553.00255302011954311222100557000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA...............................................................................................................201577.00577010039281421100167000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTC.................................................................................................................181295.002950000291300000001000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAA..............................................................................................................221275.002750130018111200310064000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT................................................................................................................191218.0021800001684200020042000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA.............................................................................................................221217.00217070123028141823100102000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC............................................................................................................231183.001830000179400000000000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTA...............................................................................................................211110.0011011700622200000026000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATT................................................................................................................................................................22154.00540160032001010004000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAA.............................................................................................................23140.0040020010727110019000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA............................................................................................................23133.0033000000231460008000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCT................................................................................................................20132.0032070020001000004000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTC.................................................................................................................19130.0030000029000000001000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--AT.................................................................................................................................................................21128.0028000025000000003000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--A..................................................................................................................................................................20128.0028000027000000001000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATTTT..............................................................................................................................................................24124.0024018000000110004000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATTT...............................................................................................................................................................23117.0017030010101000002000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAA..............................................................................................................20116.0016000016000000000000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGT..................................................................................................................18115.0015000015000000000000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATTTTC-------......................................................................................................................................................25113.001304007010000001000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--...................................................................................................................................................................19113.0013000013000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT..............................................................................................................21111.0011000000000000011000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA...............................................................................................................1916.00600014000000001000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAAC............................................................................................................2415.00500005000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTT...............................................................................................................2015.00500000000000005000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-A......................................................................................................................................................................1814.00400004000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCA................................................................................................................1913.00300000000000003000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAAA...........................................................................................................2413.00300000000000003000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTT...............................................................................................................2112.00200000000000002000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAAC............................................................................................................2212.00200002000000000000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCT................................................................................................................1812.00200002000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT.............................................................................................................2212.00200000000000002000
.................................................................................................................................................................................................................................................TGCATCCCAAGGTATGGTT.........................................................................................................................................................................................1912.00200002000000000000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCC................................................................................................................2012.00202000000000000000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAAA............................................................................................................2412.00200000000010001000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAACC...........................................................................................................2412.00200002000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT..............................................................................................................2111.00100000000000001000
.............................................................................................................................................................................................................................................................................................TTC-------A--GTGTTCGATATCTGA....................................................................................................................................1911.00100000000000001000
....................................................................................................TGGAATAC----------------------------------------------------------------------------------------------------------------CAACTCCGGAGTG-...................................................................................................................................................................................................................2111.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAACA............................................................................................................2311.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAG.............................................................................................................2211.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAG..............................................................................................................2111.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTT....................................................................................................................1511.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................TGGTTTGTTTTTGAAA--------------------------------ACTACTCAGA................................................2611.00100000000100000000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCG................................................................................................................2011.00101000000000000000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTA.................................................................................................................1911.00100000000000001000
droSec2
CCGGTGCACTGCAGC-T----GTCAAC-TTCG---------------------------------------------------------------CGCAATGGAATAC----------------------------------------------------------------------------------------------------------------CAACTCCGGAGTG-CCGAAAATTCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATCTTC-------A--GTGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTT--GAAA--------------------------------ACTACTCAGATCATATCACATACCAACAAGAAAC-----TACATAAAACTACAAACTTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA.............................................................................................................221107.0010739662
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT................................................................................................................19182.00822151451
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA...............................................................................................................20137.003703601
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA..............................................................................................................21133.003313002
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATC................................................................................................................................................................2218.0081601
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA............................................................................................................2315.0051301
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--AT.................................................................................................................................................................2113.0030210
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--A..................................................................................................................................................................2013.0031101
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT..............................................................................................................2112.0020200
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAA.............................................................................................................2111.0011000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA...............................................................................................................1911.0011000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT..............................................................................................................2111.0010100
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT.............................................................................................................2211.0010100
dm3
CCGGTGCACTGCACC-T----AACAAC-ATCG---------------------------------------------------------------CGCCGGGGAATCCCAA---------------------------------------------------------------------------CACAAC-----GAATCAAC----------------------------------------AAACAAGGTATGCTTTAGATAACTCGAATATC-AC--ATCTTC-------A--GTGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTGTAC--GAAACT------------------------------ACAACTAAGATT---TCATATAGCAACAAAAAACTGCAATACATACAACTATAAACTTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT................................................................................................................19158925.00589250000000000000000000000054000000000001010150114000010000000000000000000000000001000000000922502432411100210100031451411531022002000000010000000000000000000000010000000000000000120000080201050000001306235900001750362000000000000000001311210000000030020000100150100905039461212421150310813557521711411147110000047207320141401160202000051049532000091309910100020201777435935101514532813680
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA.............................................................................................................22119962.0019962000007002365310000000000281100020000000000011001101010010000000000000000000000001100060142201320534133736432350204903042206172313212148130000000000000120000000000001000010025000000000000000520402140220205200000352208740000440082840000013000004000725000205931502000200000010000031008002000000201194161111112218231433017302011333269010140013208811700050269387500051360161711230009580250
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA..............................................................................................................21115814.001581400001200011412960000000000319100000000000000003010000000100000000000000000000000000010149318001742714873150410141008836210431186109646102134374659131754100000010000000000000000000000000005001000000000000150200111020101000000353076280000451054400000000000000000112000001100121000000000000000126006001000002003320110710301004000301081010002264201000007204264000102432213100001405043011000525060
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA...............................................................................................................2018506.0085060000020000010000000000001772000000000010000000000000011000000000000000000000000000000303010136114101383418900061429101417102615281486000000000000100000000000000000000040000000000000001502010140201010000002305031200002660206000000000000000001312000000100000000000001000010006002020100000191131720201000000000010010000202302000003803238010000027203000101704123021000659280
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATC................................................................................................................................................................2211778.001778000000000003000000000001020000000000000000000000000201000000000000000000000000010000010000001002900700321100116701500000000000000001000000000000000000000300000000000000000010008020003000010021708700001310370000000000000000034002741794251000100000000000009000000100000010414351000101600010106002000020300000006013000000027000000010000010000235160
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--AT.................................................................................................................................................................211658.0065800000000000200000000000660000000000000000000000000000000000000000000000000000010000000000000001000160000040024420900080000000000000000000000000000000000000000000000000010000004000000000000080110000043060000000000000000012000316400800050000000000000200100000000000010173000000000000000010000000000000000200000000106100000000003000000110000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA............................................................................................................231463.0046300000100000000000000000310000000000000000000000000000000000000000000000000000000000020000001005005001003000000073102000000000000000000000000000000000000000000000000000000000000000000000001002200007017000000000000000000000000100060000000000000000010020000000000000043000000010000000000000000000000000500400100002440000003010000000031020
.............................................................................................................................................................................................................................................................................................TTC-------A--GTGTTCGAAATCTGA....................................................................................................................................191454.0045400000000000000000000000100000000000000001000000000000000000000000000000000000000100000000010019019000000001003010010400000000000000000000000000000000006000000000000000010000010000000000000000000000000000000000000000100000000000000100000000000001000000000010000101571000000000000002001000001400000003014000000011300000010000000000101000
.........................................................................................................................................................................................................CAAC----------------------------------------AAACAAGGTATGCTT.........................................................................................................................................................................................191324.0032400000000000000000000000480000000000001000000000000000000000000000000000000000000000000000000002100000000001000000000000000000000000000000000000000001010000000000000000000000000000000000001201300001101100000000000000000001000000000000000000000000001001010000000000108600100000000000010010000201000000030210001000900010001010100000023010
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCT................................................................................................................201242.002420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000002020000103000000000000000000000000000010000000000000000000000010010000000015000000000000000100000000000000000000100000009300001000010001000116010
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--A..................................................................................................................................................................201162.00162000000000002100000000006000000000000000000000000000000000000000000000000000000000000000000000100100001020001206000110000000000000000000000000000000000000000000000000001000000000000000000001202000080000000000000000000010000000001000000000000000000000000000000000005400000000000000000000000000000000010000000000100000000000100000028000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT..............................................................................................................211161.0016100000000000200000000000470000000000000000000000000000000000000000000000000000000000000000000002003000010000101000000000000000000010000000000000000000000000000000000000000000100000000000013090000801300000000000000000000100000000000000000000000001000000000000000001200000000000000000000000000000000000110000000370000002000000000012010
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTC.................................................................................................................18188.00880000000000000000000000010000000000000000000010000000000000000000000000000000000000000000100000100000000000000001000000000000000000000000000000000000000000000000000000030000000000000000000102000040200000000000000000000000000000000000000000000000000000000000000202900000000000000000000000001010000010000000010100000000010000000016000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCC................................................................................................................19187.00870000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000080010000000000000000000000000000000000000000000000000000000000076000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAA.............................................................................................................21167.006700000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000030000000000000000000000000000100000000000000000000000000000001000140000000000000000000000000000000000000000000035000000000000000005000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAT............................................................................................................23166.0066000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100030020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100001080000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000025000000000000000001000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT.............................................................................................................22164.006400000000000100000000000170000000000000000000000000000000000000000000000000000000001000000001000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000002000000010000000000000000100000000000000000000000000000000000000080000000000000000000000000000000000000000000023000000000010000005000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTA...............................................................................................................21160.006000000000000000000000000900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030400001020000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000100000000001000000027000000000000000001000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCT................................................................................................................18160.00600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000030000003000100000045000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAC.............................................................................................................22156.005600000000000000000000000100000000000000000000000000010000000000000000000000000000000000000000001001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000003000000000000000000000000000020000000000000000000000000000000000070000000000000000000000000100000003001000000014000100000000000009000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAATC...........................................................................................................24155.005500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAC..............................................................................................................21151.00510000000000010000000000090000000000000000000000000000000000000000000000000000000000000000000001400100000100000000000001000000000000000000000000000000000000000000000000000000000000000000000101000010200000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000200300000007000000000000000003000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAA..............................................................................................................22133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002000000000000020000000000000000000000000000000000000000000000000000000000000000000000000003100000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000100019000000000000000001000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAG..............................................................................................................21126.00260000000000030000000000010000000000000000000000000000000000000000000000000000000000000000000200000000000200000000000200000000000000000000000000000000000000000000000000000000000000000000000000000010200000000000000000000000000000000000000000000000000000000000000002000000000000000010000000000000000000000000001000000000000000000000
........................................................................................................................................................................................................TCAAC----------------------------------------AAACAAGGTATGCTT.........................................................................................................................................................................................20126.00260000000000010000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000100000000000000000011000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAA..............................................................................................................20125.0025000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000300200000000000001000000000000000000000000000000000000000000000000000000000000000000000000000102000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000100000000002000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAA.............................................................................................................23124.00240000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000003000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000100000000000000000010000000000000000002000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAATC..........................................................................................................25123.00230000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000194000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA...............................................................................................................19122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000105000000000000000000000000000000000000100000007000000000000000002000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAG.............................................................................................................22121.0021000010000001000000000006000000000000000000000000000000000000000000000000000000000000000000000100000010000000002000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000002000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATCTTC-------......................................................................................................................................................25117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000020000000000000000000000000000001000000000000100001000000000000000004000000000000000000000001000000000000000000002000000000000000003000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATCT...............................................................................................................................................................23116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000030000000000000000000000001000000000000000000000001000000000000000005000000000000000000000000000000000000000000002000000000000000003000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAAA...........................................................................................................24116.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000010000000000010000001000
.............................................................................................................................................................................................................................................................................................TTC-------A--GTGTTCGAAATCTG.....................................................................................................................................18115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012000000000000000000000000000000000000000000000000000000000000003000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTG...............................................................................................................20115.0015000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000004000000000000000001000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCA................................................................................................................19114.0014000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000001000000000000000007000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--...................................................................................................................................................................19114.0014000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000108000000000000000000000000000000000000000000000000000000000000002000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTATC.............................................................................................................22113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTC...............................................................................................................20111.0011000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000100000000002000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTT...............................................................................................................20111.0011000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000003000000000000000002000
..........................................................................................................................................................................................................AAC----------------------------------------AAACAAGGTATGCTT.........................................................................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000100000000000000100000000002000000000010000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCG................................................................................................................19110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000100100000000000000000000000003000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATCTT..............................................................................................................................................................24110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000201000010100000000000000000000000001000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000002000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAAA............................................................................................................22110.0010000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC............................................................................................................2317.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT..............................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000003000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATCA...............................................................................................................................................................2317.007000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
.............................................................................................................................................................................................................................................................................................................................ATA-TTCACGTTGTCTAAA.............................................................................................................1816.006000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000002000000000000000000000
............................................................................................................................................................................................................................................................................................................................GATA-TTCACGTTGTCTAAATC...........................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................ATCAAC----------------------------------------AAACAAGGTATGCTT.........................................................................................................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000003000000000000000001000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAATC............................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTGTCTAA..............................................................................................................1914.004000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAG............................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
....................................................................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATT................................................................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TTC-------A--GTGTTCGAAATCTGATC..................................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TA-TTCACGTTGTCTAAATC...........................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTCC..............................................................................................................2114.004000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000200000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTATT.............................................................................................................2214.004000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000000000
droEre2
CCGGAGCATGGCACC-T----ACGAAC-TGAGC----AT----------------------------TT----------------------------------------------------------------------------------------------------------GGGGATCGGGATCCCGGATTCGGAGTCAACAAACTCTTGTCAAACA--------AACG-AGCAGAATTCAACCCAAGGTATGGCCTAGATAACTCGGGTATC-AC--ATCTTT-------A-TGCATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTAA--GAAATAACGCCTTAACTCGGTCTGCAGCTCAAATAA-----------------------------------------------ACTTGGTGTTCSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
....................................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-AC--AT.................................................................................................................................................................2118.0080020510
....................................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-AC--A..................................................................................................................................................................2017.0070000610
.........................................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCTA...............................................................................................................2116.0060000510
.........................................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCT................................................................................................................2014.0040000220
.................................................................................................................................................................................................................................................TTCAACCCAAGGTATGGCC.........................................................................................................................................................................................1912.0020000110
....................................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-AC--ATCT...............................................................................................................................................................2311.0010000100
................................................................................................................................................................................................................................................ATTCAACCCAAGGTATGGCC.........................................................................................................................................................................................2011.0010000100
....................................................................................................................................................................................................................................................................TAGATAACTCGGGTATC-AC--ATC................................................................................................................................................................2211.0010000010
.........................................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTC.................................................................................................................1911.0010000100
.........................................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCTAAA.............................................................................................................2311.0010000010
.........................................................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGT..................................................................................................................1811.0010000010
droYak3
CCGGAGCACTGCACC-T----ACCAAC-TTCGC----AC-----------------------------------------------------------GGT----------------------------TCCTA---TTCCTATTC-------CGATTCCGA-------------------------------TTCGGAATCAAC---------------CAAGTGCGGACAG-CTCAGAGTTCACCCCAAGGTATGGCCTAGATAACACGGGTATC-AC--ATCTTT-------A-TGCATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTGTAA--GGAAAT--G--------CACTCTGCTCATCAGTTAAACTACTAAGATT---TCATATACCAACAAGGAA-------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA.............................................................................................................22150.0050140001440000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT................................................................................................................19124.0024010026150000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA...............................................................................................................20117.0017010000160000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA..............................................................................................................21116.0016000001150000
....................................................................................................................................................................................................................................................................TAGATAACACGGGTATC-AC--AT.................................................................................................................................................................2115.00501000030010
....................................................................................................................................................................................................................................................................TAGATAACACGGGTATC-AC--ATC................................................................................................................................................................2215.00512100010000
...................................................................................................................................................................................................................................................................CTAGATAACACGGGTATC-AC--AT.................................................................................................................................................................2212.00200000020000
....................................................................................................................................................................................................................................................................TAGATAACACGGGTATC-AC--A..................................................................................................................................................................2012.00200001010000
...................................................................................................................................................................................................................................................................CTAGATAACACGGGTATC-AC--A..................................................................................................................................................................2112.00200000110000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC............................................................................................................2311.00110000000000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT..............................................................................................................2111.00100000010000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAC..............................................................................................................2111.00100000010000
droEug1
ACTGAGCCCTGTAAT-G----ACCAAC-GTACC----AT----------------------------ATCTTT------------------------------------------------------------A---TATCCATAT-------CCATGTCCAGTGGAAATCTACAGGCC--------------------------------------------------------------ACCAACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGC--ATTTGC----------ATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGAATTCAAGCCTTG---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GCGGAGTGCTGCACC-G----ACCAAC-GCCAC----AT----------------------------ACGGTG-----------------------------GGATCCCCAACG-----TCGCAGTGGGTCCTATG-------TTC-------CAGTACTAG-------------------------------TCCA--------------------------------GACC-TACCCAATTCACACCAAGGCCTGGCCTCGATCACGCGGGTATC-GC--ATCT------------GCAACTGATATCTGATGAGATA-TTCACGTCTTCGAAACCAAGCCTTGGCCACGAAT--------------------------------TTGGCTTAAATC----------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GCGGAGCGCTGCACT-G----ACCAAC-TGTTCGTCCAT----------------------------AAGGTG-----------------------------AGAT----------------------------------------------------------------CTAATGGGTATCGTATTG----------------T----------C----TAATTATTGAATC-TTGCTAGTTAACCCCAAGGTCTGGCCTCGATCACGCGGATATC-GC--ATCT------------GCAATTGATATCTGGTGAGATA-TTCACGTCGTCGAAACCATGCCTTGGCCTCGAA-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCGGAGCCCTGCACT-G----ACCAGC-AGACCGAC-AG----------------------------ATCGT-------------------------------------GA--------------------------T-------C------------------------------------------CA----------------------------------------------TCCATTCCCCTCCAAGGTATGGACTCGATCACGCGAGTATC-GC--ACCTTC-------C-TGCAATCGATAATCGGTGAGATA-TTCACGTCGTCGAATCCATGTCTTG---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GCGGAGCGGTGCACT-G----ACCAGC-AGACTGACCTCTCCGCTAGCACCAGATCCCAAATCTTAGATCCC-------------------------------------GA--------------------------C-------C--------CA------------------------------------------------T---------------CCACTGCCAGCAT-CATCCATTCCACACCAAGGTCTGGCCTCGATCACGCGAGTATC-GC--ACCTTC-------C-TGCAATCGATATTCGGTGAGATA-TTCACGTCGTCGAAGCCGTGCCTTG---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GTGGAGTGCCGCACC-G----ACCACC-ACATT----TT----------------------------TT--------------------------TCTA--------------------------------------------------------------------------------------------AG-----T-------------------------GCCTAATTC-CCGCAAGTCCAATCCAACATCCGATTTCGACCACGTGGGTATC-ACTCACCTTT------CCGCTCATTTGATATCGGGTGAGATA-TTCACGTCGTTGAATCCGTGTCTTGGAA--A-----------------------------------GGAGTTTATGTTATATAATA--------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GCGGAGCATTGCACC-T----ACT-CCAGCAAC----GG----------------------------CTATCC---AGGTAACCAGCTAAACAGC--------------TA--------------------------C-------CCATCTACTCAGCT-----------CCTCTGGGAGTCGAGGCTCTAGA-----TGCAAAC----------------------------------------CTCCATGGCACGGTCTGGATTACGAGAATATC-GC--ACCTTT-------GACGCCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAGTCCGTG--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GCGAAGCGAGTCCTAC-CCCCACA-CCAG--------------------------------------CGAGGC---A------------------------------------------------------------------------------------------------------------------CA-----CGCGTAC----------------------------------------CGCCGAGGTTCGGCCTCGATCACGAGAACGTC-GC--ATCTTA-------G-TTACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCGGCTTGGCCA--------------------------------CCAATCGCAAGCATACCTAGTACCGGAAGTACA-TATCTTGCATAACAATACACATCTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAA..............................................................................................................211226.002262900161738
....................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--ATCT...............................................................................................................................................................231179.00179152091449
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGA...............................................................................................................201136.0013633009913
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAA.............................................................................................................221134.00134270041021
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAA..............................................................................................................22149.00492003440
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGA...............................................................................................................21133.00333000291
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAT.............................................................................................................22132.00323001253
....................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--AT.................................................................................................................................................................21130.00303105210
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAA.............................................................................................................23123.00233002162
....................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--ATC................................................................................................................................................................22120.00205100140
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCG................................................................................................................19112.0012200280
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAT.............................................................................................................23111.0011100271
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCG................................................................................................................20110.00100000100
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAATT............................................................................................................2318.008000080
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGAAA.............................................................................................................2116.006600000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAAT............................................................................................................2315.005000041
....................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--A..................................................................................................................................................................2015.005000050
...........................................................................................................................................................................................................................................................................................................................AGATA-TTCACGTCGTCGAA..............................................................................................................1913.003300000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAT..............................................................................................................2113.003000120
....................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--ATCTTT-------......................................................................................................................................................2513.003000111
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGAA..............................................................................................................2012.002200000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAATT............................................................................................................2412.002000020
....................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--AA.................................................................................................................................................................2112.002000020
....................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--ATCTT..............................................................................................................................................................2412.002000020
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGATT.............................................................................................................2212.002000020
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAATTT...........................................................................................................2412.002000110
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAC..............................................................................................................2112.002000020
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGT...............................................................................................................2012.002000110
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAG..............................................................................................................2111.001000010
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGT...............................................................................................................2111.001000100
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAACT...........................................................................................................2511.001000010
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGATT.............................................................................................................2311.001000010
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAATTT...........................................................................................................2511.001000010
....................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--ATCTC..............................................................................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAATT...........................................................................................................2411.001000010
...................................................................................................................................................................................................................................................................CTCGATCACGAGAACGTC-GC--ATCT...............................................................................................................................................................2411.001000010
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAAT............................................................................................................2411.001000010
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGTTT.............................................................................................................2221.002000020
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAG.............................................................................................................2211.001000010
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAG..............................................................................................................2211.001000010
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAGTT............................................................................................................2311.001000010
....................................................................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--T..................................................................................................................................................................2011.001100000
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAT..............................................................................................................2211.001000010
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGT...............................................................................................................1920.501100000
droBip1
GCGAAGCGAGTCCTTC-CTCCACA-CCAG--------------------------------------CTACCC---A------------------------------------------------------------------------------------------------------------------AA-----CGCATAC----------------------------------------CGCTGAGGTCCGGCCTCGATCACGAGAACGTC-GC--ATCTTA-------G-TTACGTTTTCATATGATGAGATA-TTCACGTCGTCGAAACCGTGCCTCG---------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droWil2
GCGAAGTGTTT--GT-G----AGCAAT-ATCGT----AT----------------------------ATTGTGCGTGCAGTGTATTGTGATGTGACACCGTGGACGAT----------------------------------------------------------------------------------------------------------------CAA-------------CAAAATTC------ATATACAATTTCAATAACGTAGATATC-GC--ATCGTTTTTTTTTACCATATTTGATAAGAGATGAGATA-TTCACGTTGTTGAAGTTGTG--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAG.............................................................................................................221330.003301102862112
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGA...............................................................................................................201264.002641025715
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAA..............................................................................................................211129.001290112134
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGT............................................................................................................23179.00793064210
....................................................................................................................................................................................................................................................................TCAATAACGTAGATATC-GC--ATC................................................................................................................................................................22118.001870920
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAA.............................................................................................................22117.0017001700
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGA............................................................................................................2319.00901710
....................................................................................................................................................................................................................................................................TCAATAACGTAGATATC-GC--AT.................................................................................................................................................................2116.00630300
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTG................................................................................................................1915.00500401
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAT..............................................................................................................2115.00500500
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAT.............................................................................................................2214.00400400
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAGTT...........................................................................................................2413.00300300
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTTGA...............................................................................................................1913.00300300
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTTGAAG.............................................................................................................2112.00200200
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGG...............................................................................................................2011.00100100
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGAAAA............................................................................................................2311.00100100
......................................................................................................................................................................................................................................................................AATAACGTAGATATC-GC--ATC................................................................................................................................................................2011.00100100
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTTGT...............................................................................................................2011.00100100
....................................................................................................................................................................................................................................................................................................................AGAGATGAGATA-TTCACGTTGT..................................................................................................................2211.00100100
....................................................................................................................................................................................................................................................................TCAATAACGTAGATATC-GC--AG.................................................................................................................................................................2111.00110000
droVir3
CCGATGCGCTGTACC-A----GCA-ACAACAAC----AG----------------------------G---------AATAGCAACGGAAACAGG--------AACCGGAA-CAGAAACAGGAAAAAGAAATTGTGTT-------C------------------------------------------CC----------------------------------------------CCTGGCC-------CAGCCCAGTTGCGATTGCGCGGACATC-TC--ATCGTA-------TAAACATTCGATAACCAACGAGATA-TTCACGTTATCGAGAC------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGA.............................................................................................................22117315.0017315150290246478601981000301170451100129755593811144743112271020245410000000000000100030105507200081100100000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAG..............................................................................................................21115065.001506510190864636506400003000406211016344376731521149399534810011010310000000000000000030012301000020000200000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATC................................................................................................................................................................221957.0095740700221206000000000054000000022120811723404300000250000000000000000000001000020010000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--AT.................................................................................................................................................................211582.0058200000611000000000000270000000140130571790210000017000000000000000000000100010000000010000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGT.............................................................................................................221582.00582000004201209000000000052000000010795411370300000053000000000000000000000400000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGA...............................................................................................................201542.00542101002313050000000000120000000127125531260211000043000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCG................................................................................................................191453.00453002004103080000000000380000010707624800500000059000000000000000000000100000000000000000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGA.............................................................................................................211140.0014000200001000000000000500000003735193403000004000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--A..................................................................................................................................................................201124.001240000010000000000000070000000333083107000006000000000000000000000000000000000000100
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAT------------------------------------------------------------------------------------------------------------231115.001150000030100000000000060000000332073801000006000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAG..............................................................................................................201111.0011100000800000000000000500000002925122206000003000000000000000001000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAA------------------------------------------------------------------------------------------------------------231102.001021010050103000001001020000000241692501000004000000000000000000000004010011100000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCG...............................................................................................................................................................231100.0010010000401070000000000110000000181962205000003000000000000000000000300000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGC.............................................................................................................22157.0057000009000100000000001400000008434040000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAC..............................................................................................................21134.00340000000000000000000080000000744603000002000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCGTA-------......................................................................................................................................................25132.00320000000001000000000000000000883604000001000000000000000000000100000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATC.................................................................................................................18125.00250000040001000000000000000000610600000007000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGAGA.............................................................................................................23118.00180010000100000000000000000000522601000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATT................................................................................................................................................................22117.00170000010000000000000000000000263301000000000000000000000000000000000010000000000
........................................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGAG..............................................................................................................22117.00170000020001000000000000000000324500000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAT..............................................................................................................21116.00160000000000000000000060000000120303000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCT...............................................................................................................................................................23114.00140000000000000000000000000000353101000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAC------------------------------------------------------------------------------------------------------------23112.00120000010000000000000030000000131300000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAA..............................................................................................................21111.00110000010000000000000030000000230101000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCC................................................................................................................1919.0090000000000000000000000000000411200000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGG.............................................................................................................2218.0082000000000000000000000000000011200000002000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGTC..............................................................................................................2118.0080000010000000000000010000000010201000002000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GATA-TTCACGTTATCGAGA.............................................................................................................1916.0060000000000000000000000000000220200000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAG------------------------------------------------------------------------------------------------------------2316.0060000000000000000000020000000010100000001000000000000000000000100000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGTT------------------------------------------------------------------------------------------------------------2315.0050000000000000000000000000000012002000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAGA.............................................................................................................2014.0040000020000000000000000000000110000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--...................................................................................................................................................................1914.0040000010100000000000000000000000002000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................ATA-TTCACGTTATCGAGA.............................................................................................................1814.0040000000000000000000000000000101100000001000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGC...............................................................................................................2013.0030000010000000000000010000000010000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCG................................................................................................................2013.0030000000000000000000010000000101000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCC...............................................................................................................................................................2313.0030000000000000000000000000000110100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCGTC-------......................................................................................................................................................2513.0030000010000000000000000000000110000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GATTGCGCGGACATC-TC--ATC................................................................................................................................................................2013.0030000000000000000000000000000010200000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GATTGCGCGGACATC-TC--AT.................................................................................................................................................................1913.0030000000000000000000000000000100200000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TT--C..................................................................................................................................................................2013.0030000020000000000000000000000000100000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGA...............................................................................................................2113.0030000000000000000000000000000200100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--C..................................................................................................................................................................2012.0020000000000000000000010000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGT.............................................................................................................2112.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATTT...............................................................................................................................................................2312.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGACC.............................................................................................................2212.0020000000000000000000020000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCGT..............................................................................................................................................................2412.0020000000000000000000000000000020000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCA...............................................................................................................................................................2312.0020000000000000000000000000000100001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGA...............................................................................................................1912.0020000000000000000000000000000200000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATA................................................................................................................................................................2212.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CGATTGCGCGGACATC-TC--AT.................................................................................................................................................................2012.0020000000000000000000000000000010000000001000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TGCGATTGCGCGGACATC-TC--A..................................................................................................................................................................2112.0020000000000000000000000000000010100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGCT..............................................................................................................2122.0040000000000000000000030000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................GATA-TTCACGTTATCGAG..............................................................................................................1812.0020000000000000000000000000000000200000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAT..............................................................................................................2011.0010000000000000000000000000000000001000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCAG...............................................................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGATC.............................................................................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TT--...................................................................................................................................................................1911.0010000000001000000000000000000000000000000000000000000000000000000000000000000000
.CGATGCGCTGTACC-A----GCA-ACA.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
....................................................................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--AA.................................................................................................................................................................2111.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGATG.............................................................................................................2211.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TTGCGATTGCGCGGACATC-TC--...................................................................................................................................................................2111.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCCC...............................................................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGAT------------------------------------------------------------------------------------------------------------2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
............................................................................................................................................................................................CC----------------------------------------------CCTGGCC-------CAGCCCAGTT.........................................................................................................................................................................................1911.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCG................................................................................................................1811.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................TTGCGATTGCGCGGACATC-TC--A..................................................................................................................................................................2211.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TGCGATTGCGCGGACATC-TC--ATC................................................................................................................................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAG..............................................................................................................1911.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................TGCGATTGCGCGGACATC-TC--AT.................................................................................................................................................................2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
droMoj3
TCGATGCGCTGTATC-A----GCA-ACAACAAC----AA----------------------------C--AT-------------------------------------------------------------------------------------------------------------------------------------------GAGTTAAACGAAATG-AACCAGTTCGTTGTTCTGGCC--CAGCCCGGTTCCGATTGCGCGGACATC-TC--ATCGTC-------TGACCATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCG--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGA.............................................................................................................221473.004736117166382
....................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATC................................................................................................................................................................22199.009914020281
....................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--AT.................................................................................................................................................................21146.00467002136
....................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--A..................................................................................................................................................................20134.00344020028
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAG..............................................................................................................21122.00227000411
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGAA............................................................................................................2316.006100104
....................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATCG...............................................................................................................................................................2316.006100005
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGT.............................................................................................................2216.006100005
..........................................................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGA.............................................................................................................2114.004400000
....................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATT................................................................................................................................................................2214.004000004
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGAT............................................................................................................2313.003100002
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGA...............................................................................................................2013.003000003
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGA.............................................................................................................2312.002100001
....................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TT--C..................................................................................................................................................................2011.001000001
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGAT............................................................................................................2411.001100000
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGG.............................................................................................................2211.001000001
....................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATCC...............................................................................................................................................................2311.001000001
...........................................................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAGA.............................................................................................................2011.001100000
....................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--AG.................................................................................................................................................................2111.001000001
....................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATG................................................................................................................................................................2211.001000001
.........................................................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGC.............................................................................................................2211.001000010
........................................................................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGT.............................................................................................................2311.001000001
....................................................................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATCT...............................................................................................................................................................2311.001000001

Generated: 10/20/2015 at 07:01 PM