ID:

dsi-mir-976

 Coordinate:

x:18342538-18342630 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

5pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-43.0 -42.9 -42.8

Flybase annnotation

utr5 [utr5_plus_15692]; utr5 [utr5_plus_15690]

No Repeatable elements found

Sense Strand Reads

CAGTCAGAGATTTCACAGACTGCGAGGATCGAAGGAAGCACTGGAACCTCCGCATGCAGTGTCGTGGCATTGGTGAGGACATCTCCAATGGATTGGTTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACTGCACTGCTGTCAACTTCGCGCAATGGAATACCAACTCCGGAGTGCCGAAAATGCATC

****************************************************..((((((((..((((((((((((.(((...((((((((..((.....))))))))))...))).))))))))))))..))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001

Testis

 M024

male body		 SRR902009

testis

 O002

Head

 M023

head

 SRR553485

Chicharo_3 day-old ovaries

 M025

embryo

 SRR553486

Makindu_3 day-old ovaries

 M053

female body

 SRR618934

dsim w501 ovaries

 SRR553487

NRT_0-2 hours eggs

 SRR553488

RT_0-2 hours eggs
.........................................................................................................TTGGATTAGTTATCATCAATGCC................................................................. 23 0 1 1235.00 1235 202 958 19 9 36 3 5 3 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAATGCC................................................................. 22 0 1 1107.00 1107 921 3 154 25 0 3 0 0 0 0 1 0
.........................................................................................................TTGGATTAGTTATCATCAATGCCG................................................................ 24 0 1 464.00 464 458 0 0 6 0 0 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAAT.................................................................... 19 0 1 285.00 285 278 0 0 7 0 0 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAA..................................................................... 18 0 1 266.00 266 263 0 0 3 0 0 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAATGCCG................................................................ 23 0 1 179.00 179 171 0 1 7 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAATGC.................................................................. 22 0 1 169.00 169 125 21 18 1 1 1 0 0 2 0 0 0
.........................................................................................................TTGGATTAGTTATCATCA...................................................................... 18 0 1 126.00 126 123 1 0 2 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAA..................................................................... 19 0 1 105.00 105 100 2 0 2 0 0 0 0 0 1 0 0
.........................................................................................................TTGGATTAGTTATCATCAAT.................................................................... 20 0 1 100.00 100 98 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAATGC.................................................................. 21 0 1 93.00 93 70 0 19 3 0 1 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAATG................................................................... 20 0 1 90.00 90 74 0 12 4 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAATG................................................................... 21 0 1 82.00 82 50 27 3 0 2 0 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAATGCCA................................................................ 23 1 1 22.00 22 0 0 20 0 0 0 0 0 0 0 1 1
...................................................................CATTGGTGAGGACATCTCCA.......................................................................................................... 20 0 1 19.00 19 18 1 0 0 0 0 0 0 0 0 0 0
...................................................................CATTGGTGAGGACATCTCCAAT........................................................................................................ 22 0 1 18.00 18 2 0 16 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAATGCCT................................................................ 24 1 1 14.00 14 0 12 1 0 1 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAATGAC................................................................. 23 1 1 9.00 9 0 9 0 0 0 0 0 0 0 0 0 0
...................................................................CATTGGTGAGGACATCTCCAA......................................................................................................... 21 0 1 7.00 7 6 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAATGCCA................................................................ 24 1 1 5.00 5 0 1 4 0 0 0 0 0 0 0 0 0
...........................................................................................................GGATTAGTTATCATCAATGCC................................................................. 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0
...................................................................CATTGGTGAGGACATCTCC........................................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GGATTAGTTATCATCAAT.................................................................... 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTAGTTATCATCAATGCCGGT.............................................................. 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAATGT.................................................................. 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAATGCCGG............................................................... 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAATGCCC................................................................ 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAATGCCT................................................................ 23 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...........................................................................................................GGATTAGTTATCATCAATGCCG................................................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................ATTGGTGAGGACATCTCCAATG....................................................................................................... 22 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................TTGGTGAGGACATCTCCAATG....................................................................................................... 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAATGT.................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAATGCT................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAGTGCC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATCAATGCCAA............................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAATGCT................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................CATTGGTGAGGACATCTC............................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................GCTTGGATTAGTTATCATCAATGC.................................................................. 24 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.........................................................................................................TTGGATTAGTTATCATCAATGTC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATTGGATTAGTTATCATCAATG................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAATTATCATCAATGCC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................CGTGGCATTGGTGAGGACATCT............................................................................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGGAATACCAACTCCGGAGTG............. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................................TTGGATTAGGTATCATCAATGCC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TGGATTAGTTATCATC....................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................................TCGGATTAGTTATCATCAATGCC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................TGATTAGTTATCATCAATGCCA................................................................ 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTGGTTATCATCAATGCC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATAATCAATGC.................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATCAGTTATCATCAATGCC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................CATTGGTGAGGACATCTCCAATT....................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................ATGGATTAGTTATCATCAATGCA................................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................TTAGTTATCATCAATGCC................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGATTAGTTATCATTAATGCC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGACTAGTTATCATCAATGCC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................ATTGGTGAGGACATCTCCA.......................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................ATTAGTTATCATCAATGCCGGAT............................................................. 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................TTGGCTTAGTTATCATCAATGCC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................TTGGGTTAGTTATCATCAATGCC................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................CATTGGTGAGGACATCTCT........................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................ATTGGATTAGTTATCATCAATGC.................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................CATTGGTGAGGACATCTT............................................................................................................ 18 1 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................ATGCATTGTCGTTGCATTG......................................................................................................................... 19 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................GTACTAGAACCTCCGCGT.......................................................................................................................................... 18 3 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
.......................GAGGATCGAAGGCATCA......................................................................................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

GTCAGTCTCTAAAGTGTCTGACGCTCCTAGCTTCCTTCGTGACCTTGGAGGCGTACGTCACAGCACCGTAACCACTCCTGTAGAGGTTACCTAACCAAGAGTAGTAACCTAATCAATAGTAGTTACGGCCACGTGACGTGACGACAGTTGAAGCGCGTTACCTTATGGTTGAGGCCTCACGGCTTTTACGTAG

**************************************************..((((((((..((((((((((((.(((...((((((((..((.....))))))))))...))).))))))))))))..))))))))....**************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487

NRT_0-2 hours eggs

 SRR553486

Makindu_3 day-old ovaries

 GSM343915

embryo

 M023

head

 SRR618934

dsim w501 ovaries

 SRR553488

RT_0-2 hours eggs

 M024

male body
............................................................................................AACCAAGAGTAGTAACCTAATCAATAGTAG....................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0
.......................................GGACCTTGGAGGCGTA.......................................................................................................................................... 16 1 2 0.50 1 0 1 0 0 0 0 0
................................................................................AAGAGGTTACCTGACCGAGAGT........................................................................................... 22 3 2 0.50 1 0 0 1 0 0 0 0
....................................TCCTAAGCTTGGAGGCGTAC......................................................................................................................................... 20 3 3 0.33 1 0 0 0 1 0 0 0
................................................................ACCGCAACCACGCCTATAGAG............................................................................................................ 21 3 3 0.33 1 0 0 0 0 1 0 0
....................................TCCTAAGCTTGGAGGCGTA.......................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 0 2
.......................................GGACCTTGGAGGCGT........................................................................................................................................... 15 1 10 0.10 1 0 1 0 0 0 0 0
..............................................................................................................................GGCCACGTCACGTGA.................................................... 15 1 13 0.08 1 0 0 0 0 0 1 0
....................ACGCTCCTGGCGTCCTT............................................................................................................................................................ 17 2 17 0.06 1 0 0 0 0 0 1 0
....................ACGCTCCTCGCTTCCTTT........................................................................................................................................................... 18 2 17 0.06 1 0 0 0 0 0 1 0
..........AAAGCATCTGACGCTC....................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0
.....................................CCTAAGCTTGGAGGCGTAC......................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0
..............................................................................................................AGGCAATCGTAGTTACGG................................................................. 18 3 20 0.05 1 0 0 0 0 0 1 0
....................ACGCTCCTTGCGTCCTT............................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 1 0
.............................................................................................ACGGAGATTAGTAACCTAA................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 x:18342488-18342680 + dsi-mir-976 Known_mirbase CAGTCAGAGATTTCACAGACTGCGAGG----------ATCGA----------------------------------AG--GAAGCACT-------GGAA-----------------------------------------------------CCTC----CGCATGCAGTGTCGTGGCATTGGTGAGGA-CATCTCCAATGGA-TTG--G---------TTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACT--GCACT-GC--------TGTCAACTTCG-----------------------------------CGCAATGGAATAC-CAA----------------------------------------------------------------------------------------------------------------------------------CTCCGGAGTGCCGAAAATGCA-TC
droSec2 scaffold_8:1735198-1735382 + dse_168 candidate-rescued CAGTCAGAGATTTCACAGACTGCGAGG----------ATCGC----------------------------------AG--GAAGCAC------------------------------------------------------------------CTC----CGCATGCAGTGCCGTGGCATTGGTGAGGA-CATCTCCAATGGC-TTA--G---------TTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACT--GCAGC-----------TGTCAACTTCG-----------------------------------CGCAATGGAATAC-CAA----------------------------------------------------------------------------------------------------------------------------------CTCCGGAGTGCCGAAAATTCA-TC
dm3 chrX:19452860-19453066 + dme-mir-976 Known_mirbase CACTCAGAGATTTCACAGAATTCGAGG----------ATCGA----------------------------------CG--GATGCACT-------GGAAT------G-----------TCTG------C--AACGGCGGTG-GTGGGCA-----TC----GCCATGCAGTGCCGCGGCATTGGTGAGGC-CATCTCCAATGGA-TTA--G---------TTCTCAACATTGGATTAGTTATCATCAATGCCGGTGCACT--GCACC-----------TAACAACATCG-----------------------------------CGCCGGGGAATCC-CAACAC----------------------------------------------------------------------------------AACGAATCA------------------------------------------------------ACA-AA
droEre2 scaffold_4690:9688845-9689079 + der_56 confident CACTCAGGGATTCCACAGGCTGCAAGG----------ATCGG----------------------------------AG--GAAGCCTT-------GAAGC-------------------------------TCCAGAGGTGTGCCAGAA------T----CGCATGCAGTGCCTCGACATTGGTGAGGG-CATCTCCAATGGG--GA--G---------CCAGCATCATTGGATTAGTTCTCATTAATGCCGGAGCATG--GCACC-----------TACGAACTGAG----CATT-------------------------------TG---------------------------------------------------------------------------GGGATCGGGATCCCG---GATTCGGAGTCAACAAACTCTTGTCAAACAA-------ACG-----------------AGCAGAATTCA-AC
droYak3 X:11885737-11885986 - dya_50 confident CAATCAGAGATTCCGCAGGCTACGAGG----------ATCGG-----------------GAGATCG-GGAGTTTGGAG--GAGGCATT-------GAAGT-------------------------------TCCAGAGGTGAGTGAGAA------T----CGCATGCAGTGCCACGACATTGGTGAGGG-CATCTCCAATGGG--GA--C---------CCGGCATCATTGGATTAGTTCTCATTAATGCCGGAGCACT--GCACC-----------TACCAACTTCG----CA-------------------------------CGGT-----------------------TCC-------------------------------------------------TATTCCTATTCCGATTCCGATTCGGAATCAACCAA-------------------------------GTGCGGACAGCTCAGAGTTCA-CC
droEug1 scf7180000409230:879614-879815 - CATTTAGAGATTCCGGAAACTTCGAATA---------ATCGA----------------------------------GG--AAAGCATC-------GAAAC------------------------------------------------------AT----CTGATGCAGCGCCTTGACATTGGCGAGGC-CAACTCCAATGTC--GA--A---------TCGAAATCATTGGATTAGTTCTCATCAATGACTGAGCCCT--GTAAT-----------GACCAACGTAC----CATAT-----------------------------CTT---------------------------------------------------------------------------TATATCCATATCCATGTCCAGTGGAAATCTA---------------CAGGCCA-------------------------------CCA-AC
droBia1 scf7180000302069:1150952-1151185 - CACTCAGAGATTCCGGAGACTTCGAAAGCGTG--AG-----------------------------GGG--------------------------------GGGGAA-------------ATCAAT------------GCTG-GTGGGGA-----TG----AGGAAGCACCGCCTCGGCATTGGTGAGGG-CACCTCCAATGGC--GA--G---------CCGGCATCATTGGATTAGTTCTCATTAATGGCGGAGTGCT--GCACC-----------GACCAACGCCA----CATAC-----------------------------GGTGGGATCCCCAACGTCGCAGTGGGTCCTATG---T--------------------------------------------------TCCAGTACTAGTCCAG-------------------------------ACC-----------------TACCCAATTCA-CA
droTak1 scf7180000415169:844762-844990 - CACTCAGAGATTCCGGAGACTTCGAAGA---------ATCTATTCTAAAGCTGAATCTGGAGAGGA-G---------------------------GA-------------------------------------------------GAA-----AG----AGGAAGCATCGCCTCGACATTATTGAGGG-CACCTCCAATGGC--GA--G---------CCGACATCATTGGATTAGTTCTCATTAATGGCGGAGCGCT--GCACT-----------GACCAACTGTTCGTCCATAA-----------------------------GGTGAGAT--------------------------------------------------------------------------------------------------CTA---------------ATGGGTATCGTATTGTCTAATTATTGAATCTTGCTAGTTAA-CC
droEle1 scf7180000490751:1118721-1118914 + CACTCAGAGATTCCGGAGCCTCCAAAT--------------------------------------TG----------------------CATCAC-----CATCACC-TCACCATCACCATCAATAC--------------------------CTG---CACAAAGCATCGCCTCGCCATTGGTGAGGG-CACCTCCAATGGC--GA--G---------CCGGCTGCATTGGATTAGTTTTCATCAATGGCGGAGCCCT--GCACT-----------GACCAGCAGACCGA--------------------------------------------------------------C---------------------------------------------------A----------------GATCGTG-------------------------------ATC-----------------CATCCATTCCC-CT
droRho1 scf7180000761121:190035-190267 - CACTCAGAGATTCCGGAGTCCTCGAACGTTGG--AG-----------------------------GAC--------------------------------CAGGACC-----------TCGG------------------------GAA---CCGCCTGCAAACAGCATCACCTCGCCATTGGTGAGGG-CATCTCCAATGAC--GA--G---------TCGGCAGCATTGGATTAGTTCTCATTAATGGCGGAGCGGT--GCACT-----------GACCAGCAGACTGA--------------------------------------------------------------CCTCTC---CGCTAGCACCAGATCCCAAATCT-------------------TA----------------GATCCCG-------------------------------ACCCATCCAC-TGCCAGCATCATCCATTCCA-CA
droFic1 scf7180000454073:1733853-1734047 + CACTCAGAGATTCCGGAGTCTTCAGCCGGCGAAGGACATCGA----------------------------------AG--GAA--------------------------------------T------------------------GAA---TCACC-GCAGACAGCGGCGCCCCGCCATTAATAAGGA-CCTCTCCAATGGC--AGACC---------GTCGAATCATTGGATTAGTTCTCATTAATGGTGGAGTGCC--GCACC-----------GACCACCACAT-------T-------------------------------TT---------------------------------------------------------------------------TT--TCTAAGTG--------------------------------------------------------CCTAATTCCCGCAAGTCCA-AT
droKik1 scf7180000302517:1183665-1183859 + CACTTGGAGATTGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------GAGGCATTGCCTCGCCATTGGTGAGAG-CATCTCCAATGAC--GGCAC---------TTGATTGCATTGGATTAGTTCTCATTGATGGCGGAGCATT--GCACC-----------TACTCCAGCAA---------------------------------C-------------------GG----------C---TATCCAGGTAACCAGCTAAACAGCTACCCATCTACTCAGCTCCTCTGGGAGTCGAGGCTCTA---GATGC--------------------------------------------------------AAA----C-CT
droAna3 scaffold_13417:2467546-2467721 - dan_128 candidate-rescued CACTCAGAGATTCTGGAGCCACTGCCGTCCAG--AG-----------------------------GGT-----CGAG--CG-------C-----------------------------TACCGAT---------------------------GCTCC---CCGAAGGAGCGCCTCGACATTGGTGAGTT-CATCTCCAATGGT--CA--G---------TAGCCCGCATTGGATTAGTTCTCATTGATGGCGAAGCGAGTCC---TACCCCCACACCAGCG-----------------------------------------------------------------------------------------AGGCACACGCGTA-----------------------------------------------------------------------------------------------------------C-CG
droBip1 scf7180000395874:39914-40086 - CACTCAGAGATTCTAGAGCCACTTCCGTCCAG--AG-----------------------------GGT-----CGAG--CG-------C-----------------------------TAGCGAT---------------------------GCTCC---GTGAAGGAGCGCCTCGCCATTGGTGGGGG-CGTCTCCAATGGC--CA--G---------AAGCCCGCATTGGATTAGTTCTCATTAATGGCGAAGCGAGTCC---TTCCTCCACACCAGCTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAACGCA-TA
droWil2 scf2_1100000004909:7956783-7956945 + dwi_142 candidate-rescued ---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACCTCGATATTGGTGAGTTCCAGCTCCAATGTTATTG--GAGCCCAACATTGAACACATTGGATTAGTTCTCATCGATGGCGAAGTGTT--T--GT-----------GAGCAATATCG----TATATTGTGCGTGCAGTGTATTGTGATGTGACACCGTGGACGAT-CAA----------------------------------------------------------------------------------------------------------------------------------------------CAAAATTCA-T-
droVir3 scaffold_13042:906672-906930 - dvi-mir-976 Known_mirbase CAATCACAAACCACGTAGCCGCAATCAGCCCG--C------------------------------AGC-----CAAG--TG-------TTATCGG-----TATCGTTATCGTTATCGTTATCGTTATCAGAATTAATTATC-GTTGAAGTGCGTTCT---TTGGTGCAGCCCCTCGCGATTGATGATAG-CATCTCCAATGAG--CA--------------TATCACATTGGATTAGTTCTCATCGATGCCGATGCGCT--GTACC-----------AGCAACAACAA---------------------------------CAG--------------------------------------GAATAGCAACGGAAACAGGAACC-------------------GGAACAGAAACAGGA---AAAAG--------------------------------------------------------AAATTGTG-TT
droMoj3 scaffold_6328:2900937-2901150 - dmo_205 confident CAATCACAAACCACATAGCCGCAATCAAACAA--CT-----------------------------GGC-----CCAAAGTG-------TTATCGT-----TATCGTT------ATCGCTAGCGAC---------------------------GCTT----CGGGTGCAGCCCCTCGCGATTGATGAAAG-CATCTCCAATGAG--TA--T------------TTCGCATTGGATTAGTTCTCATCGATGTCGATGCGCT--GTATC-----------AGCAACAACAA---------------------------------C-------------------AA----------C-------------ATGAGTTAAAC----------------------------------------------------------GAA-------------------------------ATG-AACCAGTTCGTTGTTCTGGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAGTCAGAGATTTCACAGACTGCGAGG----------ATCGA----------------------------------AG--GAAGCACT-------GGAA-----------------------------------------------------CCTC----CGCATGCAGTGTCGTGGCATTGGTGAGGA-CATCTCCAATGGA-TTG--G---------TTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACT--GCACT-GC--------TGTCAACTTCG-----------------------------------CGCAATGGAATAC-CAA----------------------------------------------------------------------------------------------------------------------------------CTCCGGAGTGCCGAAAATGCA-TCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC...................................................................................................................................................................................................................................................2311235.00123536958502029330000019000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC...................................................................................................................................................................................................................................................2211107.0011070300921253010000154000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCG..................................................................................................................................................................................................................................................241464.004640000458600000000000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAAT......................................................................................................................................................................................................................................................191285.002850000278700000000000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAA.......................................................................................................................................................................................................................................................181266.002660000263300000000000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCG..................................................................................................................................................................................................................................................231179.001790000171700000001000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC....................................................................................................................................................................................................................................................221169.00169121021251100000018000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCA........................................................................................................................................................................................................................................................181126.001260100123200000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAA.......................................................................................................................................................................................................................................................191105.001050200100200001000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAAT......................................................................................................................................................................................................................................................201100.00100000098200000000000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGC....................................................................................................................................................................................................................................................21193.00930000703100000019000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATG.....................................................................................................................................................................................................................................................20190.00900000744000000012000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATG.....................................................................................................................................................................................................................................................21182.00822270050000000003000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCA..................................................................................................................................................................................................................................................23122.0022000000001100020000
.................................................................................................................................................................................CATTGGTGAGGA-CATCTCCA........................................................................................................................................................................................................................................................................................................20119.0019010018000000000000
.................................................................................................................................................................................CATTGGTGAGGA-CATCTCCAAT......................................................................................................................................................................................................................................................................................................22118.0018000020000000016000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCT..................................................................................................................................................................................................................................................24114.0014112000000000001000
.................................................................................................................................................................................CATTGGTGAGGA-CATCTCCAA.......................................................................................................................................................................................................................................................................................................2117.00700006000000001000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCA..................................................................................................................................................................................................................................................2415.00501000000000004000
......................................................................................................................................................................................................................................GGATTAGTTATCATCAATGCC...................................................................................................................................................................................................................................................2114.00400004000000000000
.................................................................................................................................................................................CATTGGTGAGGA-CATCTCC.........................................................................................................................................................................................................................................................................................................1913.00300003000000000000
......................................................................................................................................................................................................................................GGATTAGTTATCATCAAT......................................................................................................................................................................................................................................................1813.00300003000000000000
........................................................................................................................................................................................................................................ATTAGTTATCATCAATGCCGGT................................................................................................................................................................................................................................................2212.00200000000000002000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGT....................................................................................................................................................................................................................................................2112.00200000000000002000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCGG.................................................................................................................................................................................................................................................2512.00200002000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCC..................................................................................................................................................................................................................................................2412.00202000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCT..................................................................................................................................................................................................................................................2312.00200000000000002000
......................................................................................................................................................................................................................................GGATTAGTTATCATCAATGCCG..................................................................................................................................................................................................................................................2212.00200002000000000000
..................................................................................................................................................................................ATTGGTGAGGA-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................2212.00200001000000001000
...................................................................................................................................................................................TTGGTGAGGA-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................2112.00200001000000001000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGT....................................................................................................................................................................................................................................................2211.00100000000000001000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCT...................................................................................................................................................................................................................................................2211.00100000000000001000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCAA.................................................................................................................................................................................................................................................2411.00100000000000001000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCT...................................................................................................................................................................................................................................................2311.00101000000000000000
.................................................................................................................................................................................CATTGGTGAGGA-CATCTC..........................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...................................................................................................................................................................................................................................ATTGGATTAGTTATCATCAATG.....................................................................................................................................................................................................................................................2211.00100000000000001000
............................................................................................................................................................................CGTGGCATTGGTGAGGA-CATCT...........................................................................................................................................................................................................................................................................................................2211.00100000000000001000
........................................................................................................................................................................................................................................................................................................................................TGGAATAC-CAA----------------------------------------------------------------------------------------------------------------------------------CTCCGGAGTG..............2111.00100000010000000000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATC.........................................................................................................................................................................................................................................................1611.00100000000001000000
.................................................................................................................................................................................CATTGGTGAGGA-CATCTCCAATT.....................................................................................................................................................................................................................................................................................................2311.00100000000000001000
.........................................................................................................................................................................................................................................TTAGTTATCATCAATGCC...................................................................................................................................................................................................................................................1811.00100001000000000000
..................................................................................................................................................................................ATTGGTGAGGA-CATCTCCA........................................................................................................................................................................................................................................................................................................1911.00100001000000000000
........................................................................................................................................................................................................................................ATTAGTTATCATCAATGCCGGAT...............................................................................................................................................................................................................................................2311.00110000000000000000
.................................................................................................................................................................................CATTGGTGAGGA-CATCTCT.........................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...................................................................................................................................................................................................................................ATTGGATTAGTTATCATCAATGC....................................................................................................................................................................................................................................................2311.00100001000000000000
.................................................................................................................................................................................CATTGGTGAGGA-CATCTT..........................................................................................................................................................................................................................................................................................................1820.50100000000000001000
droSec2
CAGTCAGAGATTTCACAGACTGCGAGG----------ATCGC----------------------------------AG--GAAGCAC------------------------------------------------------------------CTC----CGCATGCAGTGCCGTGGCATTGGTGAGGA-CATCTCCAATGGC-TTA--G---------TTCTCATCATTGGATTAGTTATCATCAATGCCGGTGCACT--GCAGC-----------TGTCAACTTCG-----------------------------------CGCAATGGAATAC-CAA----------------------------------------------------------------------------------------------------------------------------------CTCCGGAGTGCCGAAAATTCA-TCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC...................................................................................................................................................................................................................................................23136.003612555
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC....................................................................................................................................................................................................................................................22127.002712015
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC...................................................................................................................................................................................................................................................22115.00158511
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATG.....................................................................................................................................................................................................................................................2116.0060411
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGC....................................................................................................................................................................................................................................................2113.0031110
......................................................................................C------------------------------------------------------------------CTC----CGCATGCAGTGCCGTGG.............................................................................................................................................................................................................................................................................................................................2112.0020101
.....................................................................................AC------------------------------------------------------------------CTC----CGCATGCAGTGCCGTGG.............................................................................................................................................................................................................................................................................................................................2211.0010100
.........................................................................................................................................................CTC----CGCATGCAGTGCCGTGG.............................................................................................................................................................................................................................................................................................................................2011.0010100
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCT...................................................................................................................................................................................................................................................2311.0010100
....................................................................................CAC------------------------------------------------------------------CTC----CGCATGCAGTGCCGTGG.............................................................................................................................................................................................................................................................................................................................2311.0010100
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCA...................................................................................................................................................................................................................................................2311.0010010
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCT..................................................................................................................................................................................................................................................2411.0010100
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCAA..................................................................................................................................................................................................................................................2411.0010010
dm3
CACTCAGAGATTTCACAGAATTCGAGG----------ATCGA----------------------------------CG--GATGCACT-------GGAAT------G-----------TCTG------C--AACGGCGGTG-GTGGGCA-----TC----GCCATGCAGTGCCGCGGCATTGGTGAGGC-CATCTCCAATGGA-TTA--G---------TTCTCAACATTGGATTAGTTATCATCAATGCCGGTGCACT--GCACC-----------TAACAACATCG-----------------------------------CGCCGGGGAATCC-CAACAC----------------------------------------------------------------------------------AACGAATCA------------------------------------------------------ACA-AASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGC....................................................................................................................................................................................................................................................22136299.0036299000000011111500000000000523300000000000122311024170101312100000000000000000000000000102071000025123210350147020030320351313000001000300032000000000000000021004000000000000000025050032709000720000012638385900004660579000000210000000002963204662734518740020100000001302230101351121311120200388149402215102118101303027301374610433019022019304445003411811214461126050060450113209968611720
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATG.....................................................................................................................................................................................................................................................21112374.001237400000000000000000000000901000000000000000030102010010000000000000000000000000000010100000000000010200000100000002000201001000100002000000000000000000006000000000000000050300153015010400000071227813540000980010410000001100021000016350000350006100100000000001006200460042100000012422129306000030001000720003020049020000115401401880003000237920001010070311331001394140
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCC...................................................................................................................................................................................................................................................2315476.0054760000000000050000000000056900000000000000003020210000100000000000000000000000000000010030000100070016101201002002015100200000000100000000000000000000000002500000000000000003010007100003000000421211650000810980000000000000000037003115124014300100000000000002800121022001000115012751030112500030006000000032701000001801015000014014730010208010400000112651150
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAAT......................................................................................................................................................................................................................................................2011576.001576000000000000000000000004700000000000000000000000000000000000000000000000000000000000000000000010010000000000120000000000000000000000000000000000000000100000000000000022000003000002000000017868900001150104000000000000000001400000000000000000000000000040020030100000001141200200000000000010000000003000000013046000001129800000020108101000249020
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGATC..................................................................................................................................................................................................................................................2411447.00144700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001024423000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCC...................................................................................................................................................................................................................................................2211236.0012360000010000050000000000055000000000000000000000000001000000000000000000000000000000020020000000012008000002002005013620300000000000002000000000000000000000000000000000000000000070300000000002130200000303000000200000000000100120362019000100000000000006002000000000000201500000000000000000000000000100000000011000000016300000000000000000204020
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCATC.................................................................................................................................................................................................................................................251950.009500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000716234000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCATC................................................................................................................................................................................................................................................261423.00423000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032499000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGC....................................................................................................................................................................................................................................................211245.0024500000000000000000000000124000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000101000000100000000000000000000000000000000000000000000001000000000000000102500200000000000000001000000000000000000000000300000000000000000154010
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCA...................................................................................................................................................................................................................................................231228.00228000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000901000000000000000000000001000100000024000000000000000000000000000305800000001000000000000000000000000020000000010780000000000000000034000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGT....................................................................................................................................................................................................................................................221187.001870000000000000000000000018000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000001703000090900000000000000000000000000000000000000000000001000001000000000106300000000000000000000000000000000020100000000570000001010000000010000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCT...................................................................................................................................................................................................................................................231152.00152000000000000000000000005000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000301000010400000000000000000000000000000000000000000001000000000000000000004201000000000000000000000000000000010110000000710000001000000000018000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAA.......................................................................................................................................................................................................................................................191147.00147000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000002709000050230000000000000000000000000000000000000000000000000100000000000000490000000000000000000000000000000010014000000030000000000001100035000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCATC................................................................................................................................................................................................................................................25195.009500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007619000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................C----GCCATGCAGTGCCGCGGC............................................................................................................................................................................................................................................................................................................................19193.0093000000000000000000000004600000000000000000000000000000000000000000000000000000000000270010000015002000000001000010200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000004000000000000000000000001000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGA....................................................................................................................................................................................................................................................22168.006800000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000200000000000000000000000000000000000000001980000000000010010000000000000015000000000000000000000010000000000001000000007000000000000000009000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATT.....................................................................................................................................................................................................................................................21164.006400000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010170000305000000000000000000000000000000000000000000000030000000000000000027000000000000000000000000010000000001000000002000000000000000002000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCA..................................................................................................................................................................................................................................................24159.00590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000180000000020000000000000000000000000000000000000000000000000000000000000000000100000006000000001000000000000000000000000000021000300000000000000000000000000000016000010000000000000000000000000000100000000008000000000000000007000
..................................................................................................................................................................................ATTGGTGAGGC-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................22158.005800000000000000000000000100000000000000000010000100000000000000000000000000000100030210000000010000001000000000100000000000000000000000000000000000000000000000000000000000000000000000000000130000100000000000000000000100000000000000000000000000020000000000000001011000000000000000100000001000000000000000000005000000000000000009000
.................................................................................................................................................................................CATTGGTGAGGC-CATCTCCA........................................................................................................................................................................................................................................................................................................20156.005600000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100002020000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000220000000000000000018000
.................................................................................................................................................................................CATTGGTGAGGC-CATCTCC.........................................................................................................................................................................................................................................................................................................19153.005300000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000040000000000100000036000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCT..................................................................................................................................................................................................................................................24143.00430000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002020000100000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000100000000000000000090000000000000000019000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCA..................................................................................................................................................................................................................................................23135.00350000000000000000000000018000000000000000000000000000000000000000000000000000000000000000000000200100000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000001000000000000000006000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATG.....................................................................................................................................................................................................................................................20134.00340000000000010000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000403000010100000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000005000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGATC..................................................................................................................................................................................................................................................23125.00250000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000178000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATTGGTGAGGC-CATCTCCA........................................................................................................................................................................................................................................................................................................19124.002400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000013000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGAT...................................................................................................................................................................................................................................................23120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000173000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CATTGGTGAGGC-CATCTCCAAT......................................................................................................................................................................................................................................................................................................22118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300100100000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000005000000000000000000000
..................................................................................................................................................................................ATTGGTGAGGC-CATCTCCAAT......................................................................................................................................................................................................................................................................................................21117.0017000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000003000000000000000003000
..........................................................................................................................................................TC----GCCATGCAGTGCCGCGGC............................................................................................................................................................................................................................................................................................................................20116.0016000000000000000000000009000000000000000000000000000000000000000000000000000000000000000000000310000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TTAGTTATCATCAATGCC...................................................................................................................................................................................................................................................18116.0016000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCT..................................................................................................................................................................................................................................................23115.0015000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000002000000000000000001000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATA.....................................................................................................................................................................................................................................................21114.0014000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000102000000000000000000000000000000000000000010000000000000000000000000000002000000000000000000000000000000000001000000002000000000000000003000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATC.....................................................................................................................................................................................................................................................21114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000020100000000000000000000000000000000000000000000000000000000000000204000000000000000000000000000000000000000000001000000000000000001000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCT...................................................................................................................................................................................................................................................22111.0011000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000001000000000000000001000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCATC.................................................................................................................................................................................................................................................24111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000074000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGG....................................................................................................................................................................................................................................................2219.009000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000100000000000000000000000000002000
.................................................................................................................................................................................CATTGGTGAGGC-CATCTCCAA.......................................................................................................................................................................................................................................................................................................2119.009000000000001000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000001000
..................................................................................................................................................................................ATTGGTGAGGC-CATCTCCAA.......................................................................................................................................................................................................................................................................................................2018.008000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000003000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCG...................................................................................................................................................................................................................................................2318.008000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000003000000000000000003000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCA........................................................................................................................................................................................................................................................1817.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000002000000000000000001000
...................................................................................................................................................................................................................................ATTGGATTAGTTATCATCAATGC....................................................................................................................................................................................................................................................2316.006000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000300000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGTT...................................................................................................................................................................................................................................................2315.005000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000002000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCAA..................................................................................................................................................................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCAT.................................................................................................................................................................................................................................................2515.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000041000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCAT..................................................................................................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTATCATCAATGCCC..................................................................................................................................................................................................................................................2313.003000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATCT....................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATTT....................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCCC..................................................................................................................................................................................................................................................2413.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000002000
....................................................................................................................................................................................................................................TTGGATTAGTTATCATCAATGCTA..................................................................................................................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
droEre2
CACTCAGGGATTCCACAGGCTGCAAGG----------ATCGG----------------------------------AG--GAAGCCTT-------GAAGC-------------------------------TCCAGAGGTGTGCCAGAA------T----CGCATGCAGTGCCTCGACATTGGTGAGGG-CATCTCCAATGGG--GA--G---------CCAGCATCATTGGATTAGTTCTCATTAATGCCGGAGCATG--GCACC-----------TACGAACTGAG----CATT-------------------------------TG---------------------------------------------------------------------------GGGATCGGGATCCCG---GATTCGGAGTCAACAAACTCTTGTCAAACAA-------ACG-----------------AGCAGAATTCA-ACSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAATGG....................................................................................................................................................................................................................................................................................................221612.006120070544610
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGC....................................................................................................................................................................................................................................................221259.002592030178760
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATG.....................................................................................................................................................................................................................................................21172.0072201058110
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................21158.0058001046110
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAAT......................................................................................................................................................................................................................................................21137.0037100026100
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATG.....................................................................................................................................................................................................................................................22123.002300002030
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAAT......................................................................................................................................................................................................................................................20117.00170010970
..................................................................................................................................................................................ATTGGTGAGGG-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................22110.00100000550
..................................................................................................................................................................................ATTGGTGAGGG-CATCTCCAAT......................................................................................................................................................................................................................................................................................................2115.0050000320
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCT...................................................................................................................................................................................................................................................2314.0040000310
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCA...................................................................................................................................................................................................................................................2313.0030000210
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAATGGA--.................................................................................................................................................................................................................................................................................................2313.0030000210
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAAT......................................................................................................................................................................................................................................................................................................2012.0020000200
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAATGGT--.................................................................................................................................................................................................................................................................................................2312.0020000200
..................................................................................................................................................................................ATTGGTGAGGG-CATCTCCAA.......................................................................................................................................................................................................................................................................................................2012.0020000200
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGT....................................................................................................................................................................................................................................................2212.0020000200
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAATGGT--T................................................................................................................................................................................................................................................................................................2412.0020000200
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAATGC....................................................................................................................................................................................................................................................................................................2211.0010000100
....................................................................................................................................................A------T----CGCATGCAGTGCCTCGAC............................................................................................................................................................................................................................................................................................................................2011.0010000100
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAATGT....................................................................................................................................................................................................................................................................................................2211.0010000100
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATT.....................................................................................................................................................................................................................................................2111.0010000100
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATC.....................................................................................................................................................................................................................................................2111.0010000010
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATGT....................................................................................................................................................................................................................................................2311.0010000100
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCC...................................................................................................................................................................................................................................................2311.0010000100
..................................................................................................................................................................................ATTGGTGAGGG-CATCTCCAATT.....................................................................................................................................................................................................................................................................................................2211.0010000100
droYak3
CAATCAGAGATTCCGCAGGCTACGAGG----------ATCGG-----------------GAGATCG-GGAGTTTGGAG--GAGGCATT-------GAAGT-------------------------------TCCAGAGGTGAGTGAGAA------T----CGCATGCAGTGCCACGACATTGGTGAGGG-CATCTCCAATGGG--GA--C---------CCGGCATCATTGGATTAGTTCTCATTAATGCCGGAGCACT--GCACC-----------TACCAACTTCG----CA-------------------------------CGGT-----------------------TCC-------------------------------------------------TATTCCTATTCCGATTCCGATTCGGAATCAACCAA-------------------------------GTGCGGACAGCTCAGAGTTCA-CCSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGC....................................................................................................................................................................................................................................................221138.001388661004410000
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAATGG....................................................................................................................................................................................................................................................................................................22169.0069031002630000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATG.....................................................................................................................................................................................................................................................21160.0060730011480000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAAT......................................................................................................................................................................................................................................................20123.0023161000060000
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................21116.0016010001140000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCC...................................................................................................................................................................................................................................................23116.0016160000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCT...................................................................................................................................................................................................................................................2318.00870000010000
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATG.....................................................................................................................................................................................................................................................2215.00510000040000
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAAT......................................................................................................................................................................................................................................................2115.00520000120000
..................................................................................................................................................................................ATTGGTGAGGG-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................2213.00300000120000
...........................................................................................................................................................T----CGCATGCAGTGCCACGAC............................................................................................................................................................................................................................................................................................................................1912.00220000000000
..................................................................................................................................................................................ATTGGTGAGGG-CATCTCCAAT......................................................................................................................................................................................................................................................................................................2112.00200000110000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGCCT..................................................................................................................................................................................................................................................2411.00110000000000
..................................................................................................................................................................................ATTGGTGAGGG-CATCTCCTT.......................................................................................................................................................................................................................................................................................................2011.00100000010000
...................................................................................................................................................................................TTGGTGAGGG-CATCTCCAATGA....................................................................................................................................................................................................................................................................................................2211.00100000010000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTAATGT....................................................................................................................................................................................................................................................2211.00100000010000
..................................................................................................................................................................................ATTGGTGAGGG-CATCTCCAATA.....................................................................................................................................................................................................................................................................................................2211.00100000010000
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTAATGA....................................................................................................................................................................................................................................................2311.00100000010000
..................................................................................................................................................................................ATTGGTGAGGG-CATCTTTT........................................................................................................................................................................................................................................................................................................19200.05100000010000
droEug1
CATTTAGAGATTCCGGAAACTTCGAATA---------ATCGA----------------------------------GG--AAAGCATC-------GAAAC------------------------------------------------------AT----CTGATGCAGCGCCTTGACATTGGCGAGGC-CAACTCCAATGTC--GA--A---------TCGAAATCATTGGATTAGTTCTCATCAATGACTGAGCCCT--GTAAT-----------GACCAACGTAC----CATAT-----------------------------CTT---------------------------------------------------------------------------TATATCCATATCCATGTCCAGTGGAAATCTA---------------CAGGCCA-------------------------------CCA-ACSizeHit CountTotal NormTotal
No Reads
droBia1
CACTCAGAGATTCCGGAGACTTCGAAAGCGTG--AG-----------------------------GGG--------------------------------GGGGAA-------------ATCAAT------------GCTG-GTGGGGA-----TG----AGGAAGCACCGCCTCGGCATTGGTGAGGG-CACCTCCAATGGC--GA--G---------CCGGCATCATTGGATTAGTTCTCATTAATGGCGGAGTGCT--GCACC-----------GACCAACGCCA----CATAC-----------------------------GGTGGGATCCCCAACGTCGCAGTGGGTCCTATG---T--------------------------------------------------TCCAGTACTAGTCCAG-------------------------------ACC-----------------TACCCAATTCA-CASizeHit CountTotal NormTotal
No Reads
droTak1
CACTCAGAGATTCCGGAGACTTCGAAGA---------ATCTATTCTAAAGCTGAATCTGGAGAGGA-G---------------------------GA-------------------------------------------------GAA-----AG----AGGAAGCATCGCCTCGACATTATTGAGGG-CACCTCCAATGGC--GA--G---------CCGACATCATTGGATTAGTTCTCATTAATGGCGGAGCGCT--GCACT-----------GACCAACTGTTCGTCCATAA-----------------------------GGTGAGAT--------------------------------------------------------------------------------------------------CTA---------------ATGGGTATCGTATTGTCTAATTATTGAATCTTGCTAGTTAA-CCSizeHit CountTotal NormTotal
No Reads
droEle1
CACTCAGAGATTCCGGAGCCTCCAAAT--------------------------------------TG----------------------CATCAC-----CATCACC-TCACCATCACCATCAATAC--------------------------CTG---CACAAAGCATCGCCTCGCCATTGGTGAGGG-CACCTCCAATGGC--GA--G---------CCGGCTGCATTGGATTAGTTTTCATCAATGGCGGAGCCCT--GCACT-----------GACCAGCAGACCGA--------------------------------------------------------------C---------------------------------------------------A----------------GATCGTG-------------------------------ATC-----------------CATCCATTCCC-CTSizeHit CountTotal NormTotal
No Reads
droRho1
CACTCAGAGATTCCGGAGTCCTCGAACGTTGG--AG-----------------------------GAC--------------------------------CAGGACC-----------TCGG------------------------GAA---CCGCCTGCAAACAGCATCACCTCGCCATTGGTGAGGG-CATCTCCAATGAC--GA--G---------TCGGCAGCATTGGATTAGTTCTCATTAATGGCGGAGCGGT--GCACT-----------GACCAGCAGACTGA--------------------------------------------------------------CCTCTC---CGCTAGCACCAGATCCCAAATCT-------------------TA----------------GATCCCG-------------------------------ACCCATCCAC-TGCCAGCATCATCCATTCCA-CASizeHit CountTotal NormTotal
No Reads
droFic1
CACTCAGAGATTCCGGAGTCTTCAGCCGGCGAAGGACATCGA----------------------------------AG--GAA--------------------------------------T------------------------GAA---TCACC-GCAGACAGCGGCGCCCCGCCATTAATAAGGA-CCTCTCCAATGGC--AGACC---------GTCGAATCATTGGATTAGTTCTCATTAATGGTGGAGTGCC--GCACC-----------GACCACCACAT-------T-------------------------------TT---------------------------------------------------------------------------TT--TCTAAGTG--------------------------------------------------------CCTAATTCCCGCAAGTCCA-ATSizeHit CountTotal NormTotal
No Reads
droKik1
CACTTGGAGATTGCAGC-------------------------------------------------------------------------------------------------------------------------------------------------GAGGCATTGCCTCGCCATTGGTGAGAG-CATCTCCAATGAC--GGCAC---------TTGATTGCATTGGATTAGTTCTCATTGATGGCGGAGCATT--GCACC-----------TACTCCAGCAA---------------------------------C-------------------GG----------C---TATCCAGGTAACCAGCTAAACAGCTACCCATCTACTCAGCTCCTCTGGGAGTCGAGGCTCTA---GATGC--------------------------------------------------------AAA----C-CTSizeHit CountTotal NormTotal
No Reads
droAna3
CACTCAGAGATTCTGGAGCCACTGCCGTCCAG--AG-----------------------------GGT-----CGAG--CG-------C-----------------------------TACCGAT---------------------------GCTCC---CCGAAGGAGCGCCTCGACATTGGTGAGTT-CATCTCCAATGGT--CA--G---------TAGCCCGCATTGGATTAGTTCTCATTGATGGCGAAGCGAGTCC---TACCCCCACACCAGCG-----------------------------------------------------------------------------------------AGGCACACGCGTA-----------------------------------------------------------------------------------------------------------C-CGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGG....................................................................................................................................................................................................................................................221830.00830590161281428
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATG.....................................................................................................................................................................................................................................................211292.0029230017168104
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGT....................................................................................................................................................................................................................................................22162.006200014714
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGT...................................................................................................................................................................................................................................................23135.003520011418
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGAT......................................................................................................................................................................................................................................................20118.00180004131
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGC...................................................................................................................................................................................................................................................23111.0011100064
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGATG.....................................................................................................................................................................................................................................................22111.00110000101
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGA...................................................................................................................................................................................................................................................2318.008000035
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGTT..................................................................................................................................................................................................................................................2416.006100032
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATTGATGG....................................................................................................................................................................................................................................................2114.004400000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATT.....................................................................................................................................................................................................................................................2114.004000022
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGATGT....................................................................................................................................................................................................................................................2313.003000030
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATA.....................................................................................................................................................................................................................................................2113.003000012
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATC.....................................................................................................................................................................................................................................................2112.002000011
............................................................................................................................................................C---CCGAAGGAGCGCCTCGAC............................................................................................................................................................................................................................................................................................................................1912.002200000
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGATGA....................................................................................................................................................................................................................................................2311.001000001
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGA.......................................................................................................................................................................................................................................................2011.001000010
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGTTT.................................................................................................................................................................................................................................................2511.001000010
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGA.......................................................................................................................................................................................................................................................1911.001000010
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATAT....................................................................................................................................................................................................................................................2211.001000001
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGGAAT.................................................................................................................................................................................................................................................2511.001000010
..........................................................................................................................................................TCC---CCGAAGGAGCGCCTCGAC............................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATTGAT......................................................................................................................................................................................................................................................2111.001000010
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATTGATGAAT..................................................................................................................................................................................................................................................2420.501000001
droBip1
CACTCAGAGATTCTAGAGCCACTTCCGTCCAG--AG-----------------------------GGT-----CGAG--CG-------C-----------------------------TAGCGAT---------------------------GCTCC---GTGAAGGAGCGCCTCGCCATTGGTGGGGG-CGTCTCCAATGGC--CA--G---------AAGCCCGCATTGGATTAGTTCTCATTAATGGCGAAGCGAGTCC---TTCCTCCACACCAGCTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCAAACGCA-TASizeHit CountTotal NormTotal
No Reads
droWil2
---------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAACACCTCGATATTGGTGAGTTCCAGCTCCAATGTTATTG--GAGCCCAACATTGAACACATTGGATTAGTTCTCATCGATGGCGAAGTGTT--T--GT-----------GAGCAATATCG----TATATTGTGCGTGCAGTGTATTGTGATGTGACACCGTGGACGAT-CAA----------------------------------------------------------------------------------------------------------------------------------------------CAAAATTCA-T-SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGG....................................................................................................................................................................................................................................................221429.004297622412783
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATG.....................................................................................................................................................................................................................................................211156.0015632111625
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGAT......................................................................................................................................................................................................................................................20132.0032402701
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGGT...................................................................................................................................................................................................................................................23113.001330325
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGA.......................................................................................................................................................................................................................................................1918.00870100
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGT....................................................................................................................................................................................................................................................2217.00710501
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATCGATG.....................................................................................................................................................................................................................................................2214.00410300
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGG.......................................................................................................................................................................................................................................................1913.00330000
.........................................................................................................................................................................................................TTATTG--GAGCCCAACATTGAACACA..........................................................................................................................................................................................................................................................................2512.00220000
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATCGAT......................................................................................................................................................................................................................................................2112.00200200
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGGA...................................................................................................................................................................................................................................................2311.00100100
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGA....................................................................................................................................................................................................................................................2211.00100100
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATCGATGT....................................................................................................................................................................................................................................................2311.00100100
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGC....................................................................................................................................................................................................................................................2211.00100100
...................................................................................................................................................................................................................................ATTGGATTAGTTCTCATCGATGG....................................................................................................................................................................................................................................................2311.00100100
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGG....................................................................................................................................................................................................................................................2111.00100100
droVir3
CAATCACAAACCACGTAGCCGCAATCAGCCCG--C------------------------------AGC-----CAAG--TG-------TTATCGG-----TATCGTTATCGTTATCGTTATCGTTATCAGAATTAATTATC-GTTGAAGTGCGTTCT---TTGGTGCAGCCCCTCGCGATTGATGATAG-CATCTCCAATGAG--CA--------------TATCACATTGGATTAGTTCTCATCGATGCCGATGCGCT--GTACC-----------AGCAACAACAA---------------------------------CAG--------------------------------------GAATAGCAACGGAAACAGGAACC-------------------GGAACAGAAACAGGA---AAAAG--------------------------------------------------------AAATTGTG-TTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCG..................................................................................................................................................................................................................................................23120902.00209022055284765141097100040002113375143874528142521747598935352122485900000000000000000200124051194100000031010
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATG.....................................................................................................................................................................................................................................................2114974.00497420012052279560620000000000541001240127597603329841346101027150000000000001000000007700383468420100113
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGC....................................................................................................................................................................................................................................................2214673.00467344351214924804600000000005040040001992635305104302261001354100000000000000000001056021915181662201222
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGAT......................................................................................................................................................................................................................................................201870.008701030074025138000010000090006200012110337107096000001480000000000000000000001100012010010000001
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCC...................................................................................................................................................................................................................................................231546.005461382101900020000000000640010000443424103024000014200000000000000000400040000001541674200000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCC...................................................................................................................................................................................................................................................221496.004960030070104000000001012001000114695441340600000160000000000000100115000101022200000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGC....................................................................................................................................................................................................................................................211421.00421009103030000000000001400000001059035132081000010000000000000000001000100013100000000111
................................................................................................................................................................................CGATTGATGATAG-CATCTCCA........................................................................................................................................................................................................................................................................................................211325.003250010080000000000000018000000086662998050000013000000000000000000000100000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCAA.......................................................................................................................................................................................................................................................................................................221249.002490020010101000000000013000000065671961060000012000000000000000000000100000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCAAT......................................................................................................................................................................................................................................................................................................231231.0023110200208130000000000900010006438236103000009000000000000000000010100000040000000000
..................................................................................................................................................................................ATTGATGATAG-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................221192.0019200100109050000000000200000005139195602000007000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATG.....................................................................................................................................................................................................................................................201168.0016800500501010000000000200000004337144602000003000000000000000000000002022000000001110
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGT....................................................................................................................................................................................................................................................221164.001640000040000000000000021000000025285330240000022000000000000000000000200000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATC.....................................................................................................................................................................................................................................................211159.0015912000020200600000000002000000009149350100000119000000000000000001000100000000000000000
..................................................................................................................................................................................ATTGATGATAG-CATCTCCAAT......................................................................................................................................................................................................................................................................................................211154.00154000001000000000000003000000036321345070000016000000000000000000000000100000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGT.................................................................................................................................................................................................................................................241130.0013000000700010000000000900000002828103507000005000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCC..................................................................................................................................................................................................................................................24192.009218010020000000000000017000000065617030000014000000000000000001000100000010000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGTC................................................................................................................................................................................................................................................25174.0074000003100000000000009000000081262009000005000000000000000000000100000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGA.......................................................................................................................................................................................................................................................19170.007070000700030000000000700000003316070000016000000000000000000000100011024100000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCT...................................................................................................................................................................................................................................................23170.00704010020201000000000050000000109410050000010000000000000000001000100000121000000010
..................................................................................................................................................................................ATTGATGATAG-CATCTCCAA.......................................................................................................................................................................................................................................................................................................20161.00610000010000000000000020000000181651501000003000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCC.........................................................................................................................................................................................................................................................................................................20158.00580000030101000000000000000000111571602000001000000000000000000000000000000100000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCC..................................................................................................................................................................................................................................................23152.005200210200000000000000300000007891500000003000000000000000000000100000000000000001
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTC..................................................................................................................................................................................................................................................24148.004800000400010000000000600000009429020000011000000000000000000000000000000000000000
..........................................................................................................................................................TCT---TTGGTGCAGCCCCTCG..............................................................................................................................................................................................................................................................................................................................19143.004300001201003000000000050000000952600000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCT..................................................................................................................................................................................................................................................23143.0043000001000000000000007000000012251003000000000000000000000003000000000000000000000
..................................................................................................................................................................................ATTGATGATAG-CATCTCCA........................................................................................................................................................................................................................................................................................................19140.004000100200000000100000100000008116901000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCG..................................................................................................................................................................................................................................................24138.003810100100000000000000500000007421104000002000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCA...................................................................................................................................................................................................................................................23136.00361010001000000000000040000000244903000001000000000000000000000100021000000000011
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCT..................................................................................................................................................................................................................................................24135.00359000000000000000000050000000514700000002000000000000000001000000000010000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTC..........................................................................................................................................................................................................................................................................................................19135.003540000200000000000000000000006811100000000000000000000000000000000000030000000000
.........................................................................................................................................................TTCT---TTGGTGCAGCCCCTCG..............................................................................................................................................................................................................................................................................................................................20133.003300000304030000000000500000003211101000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATTGATGATAG-CATCTCCAATGT....................................................................................................................................................................................................................................................................................................23133.003300000200000000000000000000009102501000004000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGAT......................................................................................................................................................................................................................................................19133.00330010000100000000000010000001980603000002000000000000000000000000000100000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATT.....................................................................................................................................................................................................................................................21121.00210000000101000000000050000000611005000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GGATTAGTTCTCATCGATGCCG..................................................................................................................................................................................................................................................22120.00200020020000000000000020000000323600000000000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCAT.......................................................................................................................................................................................................................................................................................................22114.00140000000000000000000020000000370200000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCA..................................................................................................................................................................................................................................................23113.00130000000001000000000000000000331200001002000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCAATT.....................................................................................................................................................................................................................................................................................................24111.00110000000000000000000000000000310700000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GATTAGTTCTCATCGATGCCG..................................................................................................................................................................................................................................................21111.00110000000000000000000020000000250000000001000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................TAGTTCTCATCGATGCCG..................................................................................................................................................................................................................................................18111.00110000000000000000000000000000032104000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATA.....................................................................................................................................................................................................................................................21111.00110000000000000000000040000000100400000001000000000000000000000000000001000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCT...................................................................................................................................................................................................................................................22110.00100000010000000000000010000000122100000002000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGA....................................................................................................................................................................................................................................................2219.0090000000400000000000000000000111101000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TTAGTTCTCATCGATGCCG..................................................................................................................................................................................................................................................1919.0090000010000000000000010000000220101000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCAA..................................................................................................................................................................................................................................................2418.0080000003000000000000000000000000110010000000000000000000000000000011000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCAATC.....................................................................................................................................................................................................................................................................................................2418.0080000000000000000000001000000121200000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ATTAGTTCTCATCGATGCCG..................................................................................................................................................................................................................................................2017.0071000000000000000000010000000300101000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGT....................................................................................................................................................................................................................................................2117.0070000020000000000000000000000120101000000000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCC........................................................................................................................................................................................................................................................................................................2117.0070000030000000000000010000000111000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTT..................................................................................................................................................................................................................................................2417.0071000000000000000000000000000220000000002000000000000000000000000000000000000000
..................................................................................................................................................................................ATTGATGATAG-CATCTCCAATC.....................................................................................................................................................................................................................................................................................................2216.0060000000000000000000010000000202100000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GGATTAGTTCTCATCGATGCCGA.................................................................................................................................................................................................................................................2316.0060000000000000000000000000000310200000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCA..................................................................................................................................................................................................................................................2416.0060000000000000000000010000000000000000001000000000000000000000000000000031000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGA.................................................................................................................................................................................................................................................2416.0060000000000000000000000000000231000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATTGATGATAG-CATCTCCAATGTC--.................................................................................................................................................................................................................................................................................................2415.0050000000000000000000010000000200200000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGA.......................................................................................................................................................................................................................................................1815.0050000000000000000000010000000100002000000000000000000000001000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGC.................................................................................................................................................................................................................................................2415.0050000000000000000000000000000220100000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATTGATGATAG-CATCTCCAATT.....................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000310100000000000000000000000000000000000000000000000
........................................................................................................................................................GTTCT---TTGGTGCAGCCCCTCG..............................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000200300000000000000000000000000000000000000000000000
..................................................................................................................................................................................ATTGATGATAG-CATCTCC.........................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000100400000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGTCT...............................................................................................................................................................................................................................................2614.0040000000001000000000000000000111000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCTC..................................................................................................................................................................................................................................................2314.0040000000000000000000000000000010200000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCGTCC...............................................................................................................................................................................................................................................2614.0040000010000000000000010000000000100000001000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCAC.......................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000010100000001000000000000000000000100000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTCC.................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000001000000000000000000000000000000300000000
..................................................................................................................................................................................ATTGATGATAG-CATCTCCAATGA....................................................................................................................................................................................................................................................................................................2314.0040000010000000000000000000000100200000000000000000000000000000000000000000000000
.................................................................................................................................................................................GATTGATGATAG-CATCTCCAAT......................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000310000000000000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCAAA......................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000210000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTC..................................................................................................................................................................................................................................................2413.0030000000000000000000010000000000100000001000000000000000000000000000000000000000
.......................................................................................................................................................CGTTCT---TTGGTGCAGCCCCTCG..............................................................................................................................................................................................................................................................................................................................2213.0030000000001000000000000000000101000000000000000000000000000000000000000000000000
.................................................................................................................................................................................GATTGATGATAG-CATCTCCA........................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000200100000000000000000000000000000000000000000000000
..............................................................................................................................................................................CGCGATTGATGATAG-CATCTCCA........................................................................................................................................................................................................................................................................................................2313.0030000000000000000000010000000200000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCTCT.................................................................................................................................................................................................................................................2513.0030000000000000000000000000000001001000000000000000000000000000100000000000000000
.............................................................................................................................................................................TCGCGATTGATGATAG-CATCTCC.........................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000210000000000000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCT...........................................................................................................................................................................................................................................................................................................1813.0030000000000000000000010000001000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCA...................................................................................................................................................................................................................................................2213.0030000000000000000000000000000100100000000000000000000000000000000000000000000010
..................................................................................................................................................................................ATTGATGATAG-CATCTCCAATTT....................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000201000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATCT....................................................................................................................................................................................................................................................2213.0030000000000000000000010000000000100000001000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATC.....................................................................................................................................................................................................................................................2013.0030000000000000000000000000000020100000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................GATTAGTTCTCATCGATGCCGA.................................................................................................................................................................................................................................................2212.0020000000100000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATAA....................................................................................................................................................................................................................................................2212.0020000000000000000000020000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TTGATGATAG-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000200000000000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCAATCT....................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTTC..................................................................................................................................................................................................................................................2312.0020000000000000000000020000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................ATTAGTTCTCATCGATGCCGAT................................................................................................................................................................................................................................................2212.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
............................................................................................................................................................T---TTGGTGCAGCCCCTCGCG............................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATTT....................................................................................................................................................................................................................................................2212.0020000000000000000000020000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGCCCT.................................................................................................................................................................................................................................................2412.0020000000000000000000000000000001100000000000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTT..........................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGCCGT.................................................................................................................................................................................................................................................2512.0020000000000000000000000000000101000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GGATTAGTTCTCATCGATGCC...................................................................................................................................................................................................................................................2112.0020010000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TCGCGATTGATGATAG-CATCT...........................................................................................................................................................................................................................................................................................................2112.0020000000001000000000010000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTT...................................................................................................................................................................................................................................................2312.0020000010000000000000000000000000000000001000000000000000000000000000000000000000
...........................................................................................................................................................CT---TTGGTGCAGCCCCTCG..............................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000110000000000000000000000000000000000000000000000000
...................................................................................................................................................................................TTGATGATAG-CATCTCCAAT......................................................................................................................................................................................................................................................................................................2012.0020000010000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCAATGA....................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000100100000000000000000000000000000000000000000000000
.................................................................................................................................................................................GATTGATGATAG-CATCTCCAA.......................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000001100000000000000000000000000000000000000000000000
...........................................................................................................................................................CT---TTGGTGCAGCCCCTCGCG............................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000010000000000100000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................TTAGTTCTCATCGATGCCT..................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000002000000000000000000000000000000000000000
..................................................................................................................................................................................ATTGATGATAG-CATCTCCC........................................................................................................................................................................................................................................................................................................1921.5030000000000000000000010000000000100000001000000000000000000000000000000000000000
...................................................................................................................................................................................TTGATGATAG-CATCTCCAA.......................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
................................................................................................................................................................................CGATTGATGATAG-CATCTCCAAAT.....................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................TCGCGATTGATGATAG-CATCTCCA........................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.................................................................................................................................................................................GATTGATGATAG-CATCTCCAATT.....................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
....................................................................................................................................................................................TGATGATAG-CATCTCCAA.......................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
droMoj3
CAATCACAAACCACATAGCCGCAATCAAACAA--CT-----------------------------GGC-----CCAAAGTG-------TTATCGT-----TATCGTT------ATCGCTAGCGAC---------------------------GCTT----CGGGTGCAGCCCCTCGCGATTGATGAAAG-CATCTCCAATGAG--TA--T------------TTCGCATTGGATTAGTTCTCATCGATGTCGATGCGCT--GTATC-----------AGCAACAACAA---------------------------------C-------------------AA----------C-------------ATGAGTTAAAC----------------------------------------------------------GAA-------------------------------ATG-AACCAGTTCGTTGTTCTGGCSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCG..................................................................................................................................................................................................................................................231315.00315160101297
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGT....................................................................................................................................................................................................................................................221194.0019481221180
..................................................................................................................................................................................ATTGATGAAAG-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................221100.001008010091
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATG.....................................................................................................................................................................................................................................................21160.00601000059
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTC...................................................................................................................................................................................................................................................23140.00401001038
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTC...................................................................................................................................................................................................................................................22114.00140000014
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGT....................................................................................................................................................................................................................................................21111.0011101009
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTT...................................................................................................................................................................................................................................................23110.00100000010
..................................................................................................................................................................................ATTGATGAAAG-CATCTCCAATGT....................................................................................................................................................................................................................................................................................................23110.0010000109
......................................................................................................................................................................................................................................GGATTAGTTCTCATCGATGTCGTC................................................................................................................................................................................................................................................2419.009000009
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCT..................................................................................................................................................................................................................................................2417.007000007
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGAT......................................................................................................................................................................................................................................................2016.006000006
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTC..................................................................................................................................................................................................................................................2415.005000005
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCGTC................................................................................................................................................................................................................................................2514.004000004
......................................................................................................................................................................................................................................GGATTAGTTCTCATCGATGTCG..................................................................................................................................................................................................................................................2214.004300001
................................................................................................................................................................................CGATTGATGAAAG-CATCTCCAAT......................................................................................................................................................................................................................................................................................................2313.003000003
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCGC.................................................................................................................................................................................................................................................2412.002000002
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCGT.................................................................................................................................................................................................................................................2412.002000002
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTT..................................................................................................................................................................................................................................................2412.002000002
..................................................................................................................................................................................ATTGATGAAAG-CATCTCCAATGA....................................................................................................................................................................................................................................................................................................2312.002000002
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGC....................................................................................................................................................................................................................................................2212.002000002
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATG.....................................................................................................................................................................................................................................................2012.002000002
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCG..................................................................................................................................................................................................................................................2412.002000002
..................................................................................................................................................................................ATTGATGAAAG-CATCTCCAATGTC--.................................................................................................................................................................................................................................................................................................2411.001000001
..................................................................................................................................................................................ATTGATGAAAG-CATCTCCAATT.....................................................................................................................................................................................................................................................................................................2211.001000001
........................................................................................................................................................................................................................................ATTAGTTCTCATCGATGTCG..................................................................................................................................................................................................................................................2011.001100000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTA...................................................................................................................................................................................................................................................2311.001000001
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTTC.................................................................................................................................................................................................................................................2511.001100000
................................................................................................................................................................................CGATTGATGAAAG-CATCTCC.........................................................................................................................................................................................................................................................................................................2011.001000100
......................................................................................................................................................................................................................................GGATTAGTTCTCATCGATGTC...................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTTCC.................................................................................................................................................................................................................................................2511.001000001
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCT..................................................................................................................................................................................................................................................2311.001000001
.....................................................................................................................................................................................................................................TGGATTAGTTCTCATCGATGTCA..................................................................................................................................................................................................................................................2311.001000010
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCTC.................................................................................................................................................................................................................................................2511.001000001
...................................................................................................................................................................................TTGATGAAAG-CATCTCCAATG.....................................................................................................................................................................................................................................................................................................2111.001000001
....................................................................................................................................................................................................................................TTGGATTAGTTCTCATCGATGTCC..................................................................................................................................................................................................................................................2411.001000001

Generated: 10/20/2015 at 10:34 PM