ID:

dsi-mir-969

 Coordinate:

x:17118152-17118264 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

5pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

utr5 [utr5_plus_15549]

No Repeatable elements found

Sense Strand Reads

GAAAGTGTGCAAGTGATGTCAGTGCAACGTCGTCATCAGTGGCGTTCGGGGAATCCCCAAGTCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGATGGACTACTGCAATTCAAAATCCAGTTGCTACTAAATTTAAGTTCCATGCCAAGTGTTCTATAAGT

**************************************************************.(((((((((((..(((((((.((....((((((((..................))))))))....)).)))))))..)))))))))))...*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023

head

 M025

embryo

 O002

Head

 SRR902009

testis

 M024

male body		 SRR553488

RT_0-2 hours eggs

 M053

female body

 GSM343915

embryo

 SRR553487

NRT_0-2 hours eggs

 SRR553486

Makindu_3 day-old ovaries

 SRR902008

ovaries

 SRR618934

dsim w501 ovaries

 O001

Testis

 SRR553485

Chicharo_3 day-old ovaries
......................................................................................................................AACTTGACACGTTGAGCTCGT.......................................................................... 21 0 1 913.00 913 598 250 5 19 11 8 5 4 4 3 3 2 0 1
......................................................................................................................AACTTGACACGTTGAGCTCGG.......................................................................... 21 1 1 104.00 104 54 48 0 0 2 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGAGCTCG........................................................................... 20 0 1 58.00 58 39 13 2 1 3 0 0 0 0 0 0 0 0 0
.............................................................................GAGTTCCACTAAGCAAGTTTT................................................................................................................... 21 0 1 51.00 51 2 0 46 0 0 0 1 1 0 0 0 0 1 0
......................................................................................................................AACTTGACACGTTGAGCTCGC.......................................................................... 21 1 1 36.00 36 26 9 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................GAGTTCCACTAAGCAAGTTT.................................................................................................................... 20 0 1 33.00 33 1 0 32 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GAGTTCCACTAAGCAAGT...................................................................................................................... 18 0 1 30.00 30 0 0 29 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................AAACTTGACACGTTGAGCTCG........................................................................... 21 0 1 5.00 5 3 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TCGTGGGATGGACTACTGC....................................................... 19 0 1 4.00 4 1 0 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GAGTTCCACTAAGCAAGTT..................................................................................................................... 19 0 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGAGCTC............................................................................ 19 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGATCTCG........................................................................... 20 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TTGAGATCGTTTTAAAAACAAAAACT........................................................................................... 26 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAACTTGACACGTTGAGCTC............................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGAGCTCGTT......................................................................... 22 0 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......................................................................................................................AACTCGACACGTTGAGCTCGT.......................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AAACTTGACACGTTGAGCTCGT.......................................................................... 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGATCTCGT.......................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGAGCTCGTAA........................................................................ 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACTTTGAGCTCGT.......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................AACTGACACGTTGAGCTCGT.......................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGGTGAGCTCGT.......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................TACTTGACACGTTGAGCTCGT.......................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................CCGTGGTCCACTAAGCAAGTTT.................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAACTTCACACGTTGAGCTC............................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................CAGTTCCACTAAGCAAGTTTT................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TCGTGGGATGGACTACTGCAA..................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAAACTTGACACGTTGAGCTCG........................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTTACACGTTGAGCTCGT.......................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................GAGTTCCACTAAGCAAGTTTTC.................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGCGCTCGT.......................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................TTTGAGATCGTTTTAAAA.................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................TGCAACTTCTTCATCAGTGGCC......................................................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................TTGAGATCGTTTTAAAAACAA................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGAGCTCAT.......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGGGATCGT.......................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TCGTGGGATGGACTACTGCA...................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGAGCGCGT.......................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGAGCTCGTTT........................................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGATCTCGC.......................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TAGAGGTCGTTTTAAAAAAAAAAA............................................................................................. 24 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................AAACTTGACACGTTGAGCTC............................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................AACTTGACACGTTGAGCTCGTAAA....................................................................... 24 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................TTTGAAATCGGTTTAAAAAAAAAAA............................................................................................. 25 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................TGAGATCGTTTTAAAAGCT................................................................................................. 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................TGAGATCATTTTAAAAA................................................................................................... 17 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................GTTCTACGTCCGAGATC.................................................................................................................................. 17 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................TCTAGAGGTCGTTTTAAAAA................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................TGAGATCATTTTAAAAACT................................................................................................. 19 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................AACTGACACGTTGAGCTCGG.......................................................................... 20 3 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................TTCTACGTCCGAGATC.................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.........................AACGTCGTCTTCAGCGG........................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
................................TCCTTAGTGGCGTACGGG................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................TTCGAGAGCGTTTTAAAA.................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CTTTCACACGTTCACTACAGTCACGTTGCAGCAGTAGTCACCGCAAGCCCCTTAGGGGTTCAGAGACAGGATGCAGGCTCAAGGTGATTCGTTCAAAACTCTAGCAAAATTTTTGTTTTTGAACTGTGCAACTCGAGCAAGCACCCTACCTGATGACGTTAAGTTTTAGGTCAACGATGATTTAAATTCAAGGTACGGTTCACAAGATATTCA

***********************************************************.(((((((((((..(((((((.((....((((((((..................))))))))....)).)))))))..)))))))))))...************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023

head

 SRR618934

dsim w501 ovaries

 SRR553486

Makindu_3 day-old ovaries

 SRR553487

NRT_0-2 hours eggs

 SRR902009

testis

 M024

male body
..........................................................................AGGCTCAAGGTGATTCGTTCAA..................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................ACCAGACCTGATCACGTTAA................................................... 20 3 7 0.14 1 0 1 0 0 0 0
...............TGTCGTCACGTTGCAGCAGT.................................................................................................................................................................................. 20 3 7 0.14 1 0 0 1 0 0 0
.............................................................AGAGACAGGATGGAG......................................................................................................................................... 15 1 9 0.11 1 0 1 0 0 0 0
................................................CCCTAAGGGGTTCAG...................................................................................................................................................... 15 1 9 0.11 1 0 1 0 0 0 0
.............................................................AGAGAGAGGATACAGGCT...................................................................................................................................... 18 2 20 0.10 2 0 0 0 2 0 0
.......................................................................TGCAGGTGCAAGTTGATTC........................................................................................................................... 19 3 12 0.08 1 0 0 0 0 1 0
.........................................................CTTCTCAGACAGGATGCA.......................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 x:17118111-17118304 + dsi-mir-969 Known_mirbase CAAG---TG--------------------------------------------------ATGTCAG--T------------------------------------------------------------G----------------------CA--------------------------ACGTCGTCATCAGTGGCGTTC-GGGGAATCCC---C---AAG------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACTACTGCAATTCAAAATCCAGTTGCTACTAAA-----------------------------------TTTAAGTTCCATGC--------------CA-------AGTG
droSec2 scaffold_8:326539-326717 + dse_88 confident CAAG---TG--------------------------------------------------ATGTCAG--T------------------------------------------------------------G----------------------CA--------------------------ACGTCGTCATCAGTGGCGTTC-GAGGAATCCC---C---AAG------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACTACTG---------------TTGCTACTAAA-----------------------------------TATAAGTTCTATGC--------------CA-------TGTG
dm3 chrX:18018340-18018533 + dme-mir-969 Known_mirbase CAAG---TG--------------------------------------------------ATGTCAG--T------------------------------------------------------------G----------------------CA--------------------------ACGTCGTCATTAGTGGCATTC-GGTGAATCCC---C---AAG------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACTACTGCAATTCGAAATCCAGTTGCTACTTAA-----------------------------------TTTAAGTTCTATGC--------------CA-------TGTG
droEre2 scaffold_4690:8345974-8346165 + der_63 confident CAAG---TG--------------------------------------------------ATGTCAG--T------------------------------------------------------------T----------------------CA--------------------------ACAACGTCATGAGTTGCGTTT-GGGAAGTTCC---C---AAA------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGATTACTGC----CGAAAGCCAGTTGCAACTAAATTAAA---------------------------------AAGTTCTATAC--------------CA-------TGTG
droYak3 X:16642274-16642470 + dya_48 confident CAAG---TG--------------------------------------------------ATGTCAG--T------------------------------------------------------------T----------------------CA--------------------------AAATCGTCATCAGTGGTGTTC-GGGGTATCCC---C---AAA------------------------CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGA-TGGTCTACCGCAATTCGAAAGACAGTTGTAACTTAATTAAAA--------------------------------AAGTTCCATAG--------------CA-------TGTG
droEug1 scf7180000408176:664481-664675 - AAAG---TG--------------------------------------------------A-GAAAG--AGTAAGT------------------------------------------------------T----------------------G--------------------------------------AGCAGCTTTCTGGGGAATCCC---CCTGAAA-----------------TC-----TCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACTTCATCAGCTTGAAAGCCTGCTTAAAATAAACTAAGAATGAT-----------------------------------TAT--------------AA-------AGTT
droBia1 scf7180000301760:584922-585128 - CTT-AAGTG--------------------------------------------------CTGC-----AGTAAGT------------------------------------------------------T----------------------CT--------------------------ACAATGTCAT-------------GGGAATCTCTGCTCCGCAA------------------------TAGCTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCT-TGGCC----CCACTTCA-AAACCAATTTCAACTAAA-----A--------------------------------AAATTCTAAGTAAAAAATAGTTTTACATTTTTTTGATG
droTak1 scf7180000415843:458239-458366 - CTAG---TG--------------------------------------------------AAGC-------------------------------------------------------------------------------CTCGAACTCA-----------------------TCAA-CCTACAGCA--------------T-------C---G---AAT------------------------ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGAA-TGG-------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491193:225580-225783 + GAAG---TA--------------------------------------------------A-------------G-----------------------------------------------------------------------------------------------------TTCCATCGATGTCA-----------C-GGGTAATCTC---CCAAAAA------------------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAACTTCAGTTTAACAGAGTCCTACAAATAAACCAAGAAAGTTTACTTATTTCA-------------TATAAGTCCTTTG---------------TA-------AGTA
droRho1 scf7180000779986:498529-498741 - CAGCAAGT-------------------------------------------------------------------------------------------------------------------------T----------------------AA-------------GAAGTATGTTCT-TTGACGTCG-----------C-TGGGAATCCC---C--GAAA------------------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGA-CGGGCTACTTCAATTCAAAAGAATATTCGAAATAAACCAAGAAAA-TTAATGAGTTTTTGTAAGTA-----------TTCAAAAG--------------CA-------GGTG
droFic1 scf7180000453872:337490-337688 - CAAG---TG--------------------------------------------------ATGAAGAAGT------------------------------------------------------------G----------------------AA-------------GCAGTTGGCTCA-GCGATGGCA-----------C-GGGGAGTCCC---C---GAA----------------TTCCCGGTTCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAACTCCAGCTT-----------------------------------------TCGCAAGAAATCAACAACAGTTTTAA----------------AA-------AGTG
droKik1 scf7180000302696:1720051-1720240 + TGAG---TT--------------------------------------------------CTTACAG--T------------------------------------------------------------A----------------------TAACTTTATATTTAAGATGTAAGTACA-ATA-------------------AGTGAA-AGT---G---AAG------------------------ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTT-CAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAGACAAAAGCAAC-----AATCAGTTAATAAAAAA-----------------------------------ATAAAC-----CTT--------------CA-------ACTA
droAna3 scaffold_13335:1607989-1608159 - dan_60 confident AAAG---TG---ATTTT--------------------ATAGTTCAAGATAAATTATA----AACAG--AGTAAGTTTGTGTTT------------------------TAGAAA------ATGTGT--------TTATTTTTTTTGGAA-----------------------------------------------------------------------AAT------------------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAGA------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395454:59882-60031 + TAAG---TG---TTTTA------------------------------------------AAGTTAG--T----------GTTT------------------------T-GAAA------AAGTGTGTGTCTTGTAATTTTTTTTGGAA-----------------------------------------------------------------------AAT------------------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAGA------------------------------------------------------------------------------------------------------------
dp5 XL_group3a:1977519-1977687 - dps-mir-969 Known_mirbase AAAG---TG--------------------------------------------------AAATAAAAGT----------GACATAGAAACTGAAATAGAAAGGGAAATTGAAATGCAAACTGA-A--------ATATAATTCCTGGAAGCCA----------------------------------------------------------TC---T---AGG------------------------AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGT--ATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG-------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_11:2701203-2701371 + dpe_84 confident AAAG---TG--------------------------------------------------AAATAAAAGT----------GACATAGAAACTGAAATAGAAAGGCAAATTAAAATGCAAACTGA-A--------ATATAATTCCTGGAAGCCA----------------------------------------------------------TC---T---AGG------------------------AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGT--ATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG-------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:12029356-12029484 + dwi_49 confident A-AG---TG--------------------------------------------------ATGAAAT--T------------------------------------------------------------G----------------------AA--------------------------AAGAAATTGAAAGTTACGTTT-------------------AT------------------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGA-CAGA------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:1264100-1264244 - dvi-mir-969 Known_mirbase TAAG---TT----------------------------------------------------------------------GATATCGAAATT--------------------------------------G----------------------AA--------------------------ATTTCATGTGGTGTCGCTTTCAAGAGCA-GCT---C---GCG------------------------CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CGG-------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6473:13724208-13724395 + dmo_81 confident CTTC---TC---TCTCTCTCCCGCTGTTTATCCATATCTTGTTCAATATTTATTAAGAGATGGCTG--G------------------------------------------------------------G----------------------TA--------------------------AGTTGCTCAAGAG-----------------CC---C---AATCCTTATCCATACCATATCCACATTTGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAGT----GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTG--------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15203:8445683-8445849 + dgr_54 confident TGACAAGTGCTAGAGCACTTACG----------------------------------------CTG--AGTAAGTATC---T------------------------------------------------------------TTCGAAATG-AT-------------TCGGTTTGTTCT-TTTACAGCA--------------GTGCA--TC---C---GGG------------------------TGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGCGT--ATT-TGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGT-TG--------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CAAG---TG--------------------------------------------------ATGTCAG--T------------------------------------------------------------G----------------------CA--------------------------ACGTCGTCATCAGTGGCGTTC-GGGGAATCCC---C---AAG------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACTACTGCAATTCAAAATCCAGTTGCTACTAAA-----------------------------------TTTAAGTTCCATGC--------------CA-------AGTGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................211913.0091359811250505134824319000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG.........................................................................................................................211104.001045424800000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................20158.00583931300200000001000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................21151.0051200114600000100000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC.........................................................................................................................21136.0036261900000000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.....................................................................................................................................................................20133.0033100003200000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGT.......................................................................................................................................................................18130.0030000012900000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................2115.00530100100000000000
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGACTACTGC.....................................................................................................1914.00410000300000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTT......................................................................................................................................................................1914.00400000400000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC...........................................................................................................................1913.00320000100000000000
.........................................................................................................................................................................................................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT..........................................................................................................................................2613.00330000000000000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTC...........................................................................................................................2112.00220000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................2212.00210000000000100000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................2212.00220000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTAA.......................................................................................................................2311.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGACTACTGCAA...................................................................................................2111.00100000100000000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG..........................................................................................................................2211.00110000000000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTC...................................................................................................................................................................2211.00100010000000000000
........................................................................................................................................................................................................................................................................................TTTGAGATC--GTTTTAAAA...................................................................................................................................................1811.00110000000000000000
.........................................................................................................................................................................................................................................................................................TTGAGATC--GTTTTAAAAACAA...............................................................................................................................................2111.00110000000000000000
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGACTACTGCA....................................................................................................2011.00100000100000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.......................................................................................................................2311.00110000000000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTC...........................................................................................................................2011.00110000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTAAA......................................................................................................................2420.50110000000000000000
droSec2
CAAG---TG--------------------------------------------------ATGTCAG--T------------------------------------------------------------G----------------------CA--------------------------ACGTCGTCATCAGTGGCGTTC-GAGGAATCCC---C---AAG------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACTACTG---------------TTGCTACTAAA-----------------------------------TATAAGTTCTATGC--------------CA-------TGTGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................211114.0011411233545
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................21185.008502083
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.....................................................................................................................................................................20133.003301032
.......................................................................................................................................................................................................................................................................AGTTCCACTAAGCAAGTTTT....................................................................................................................................................................2012.0020002
...........................................................................................................................................................................................................................................................................................GAGATC--GTTTTAAAAACAAA..............................................................................................................................................2012.0020020
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................2212.0020020
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................2212.0020011
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGACTACTG---------------T......................................................................................1912.0020002
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTA........................................................................................................................2211.0010001
....................................................................................................................................................................................................................................................................................................................TTGACACGTTGAGCTCGTTCGTGT...................................................................................................................2411.0010001
....................................................................................................................................................................................................................................................................................................................TTGACACGTTGAGCTCGTTCGT.....................................................................................................................2211.0010001
.....................................................................................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTT......................................................................................................................................................................2011.0010001
.......................................................................................................................................................................................................................................................................AGTTCCACTAAGCAAGTTT.....................................................................................................................................................................1911.0010001
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGACTACTG---------------TT.....................................................................................2011.0010001
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................2011.0010010
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGT.......................................................................................................................................................................1811.0010001
............................................................................................................................................................................................................................................................................................................................TTGAGCTCGTTCGTGGGA-TGG.............................................................................................................2111.0010001
dm3
CAAG---TG--------------------------------------------------ATGTCAG--T------------------------------------------------------------G----------------------CA--------------------------ACGTCGTCATTAGTGGCATTC-GGTGAATCCC---C---AAG------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACTACTGCAATTCGAAATCCAGTTGCTACTTAA-----------------------------------TTTAAGTTCTATGC--------------CA-------TGTGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................2111843.001843000010000000000100040000000003276105100000000000000000000000110000000000000000000000220000000000440083514100121710010000000000161002048200412283500000000000000000000000000000000000011511108300321182835790112000000107000000000000000000000000000000000030000000000000003283000970400000800000000000100000000001000002350244300610000004012000000000000000001320100000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................2111512.0015120000000000000000000000100000861091101000001101100210000000000000000000000000000000000000000000040000002000000000000011230504340600500000000000009002300420000000000000002831033009116161115529520000046101000000200000000000000010112991726623044710000000211800201102602000034305011000026000130111302000114528123934130844363010719015580016212211056040917858512760011500
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.....................................................................................................................................................................201219.0021900000000000000000000000000001000000000000000000000000000100000000000000000000000100000000001000010000500000000000000100203000703300000000000000000000000000000000000014130600490111110620000017000000000000000000000000000000000000000000000000001700000110000000100000000000000000000000000005492200000000001001000000000000000003400000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................20154.0054000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000004000000000000000010101000110013000001000000000000000000000000000101000000001000000001000000000001000000000000000000000000000010000002002150000300101300000000000000000920200000000
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGACTACTGC.....................................................................................................19149.00490000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000100000000026000000000100000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000200001101000004000000000000000000000000000002200000000000001200000000000000000010100000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................22149.0049000000000000000000000000000010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001000100001000000000000000000002000000000000000010100000010000000007000000000000000000000000000001000100000000000000000000000000000010000000000000000010000000000040000542000000000100000100000020000520100000100
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTATC......................................................................................................................24138.003800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AGTTCCACTAAGCAAGTTTT....................................................................................................................................................................20137.0037000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000100000001000000000000000000000000000000000000000440000120403020000003000000000000000000000000000010000000000000000000001100000100000000000000000000000000000000000001120020000000000000000000000000000100000000000
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGACTACTGCAA...................................................................................................21131.00310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200000019000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000001000003000000000000000000000000000020000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGACTACTGCA....................................................................................................20125.0025000000000000000000000000000000000000000000000000000000001000000000000000000000001000000000020000000004000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002002000000000000000000000000000000000031130000000000200000000000000000000000010000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC.........................................................................................................................21112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000000000010000000000000000000000000000100000000000000000000000000000000000030001010100000000000000000000000000000010000100
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTT......................................................................................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200200000100000000000000000000000000000000000000000000000000000000000001000000200000000000000000000000000000000000000000000000000000000000000000000000300000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTA........................................................................................................................2219.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000010000001000001100000000000000000000000001000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGT.......................................................................................................................................................................1818.008000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AGTTCCACTAAGCAAGTTT.....................................................................................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000010000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000011000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG.........................................................................................................................2114.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT.........................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000
.....................................................................................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000010100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTT...................................................................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTC....................................................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GAGATC--GTTTTAAAAACAAA..............................................................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGACTACTGCT....................................................................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................AAG------------------------TCTCTGTCCTACGTCC.........................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................TTGACACGTTGAGCTCGTTCGT.....................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTG...................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGACTACTGCAAA..................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GTTCCACTAAGCAAGTTTT....................................................................................................................................................................1912.002000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTTT.......................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC...........................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.......................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGA.........................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTG....................................................................................................................................................................2112.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTAT.......................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTA.......................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTATC.................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................ACACGTTGAGCTCGTTCC......................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CGTGGGA-TGGACTACTGCATC..................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAAG---TG--------------------------------------------------ATGTCAG--T------------------------------------------------------------T----------------------CA--------------------------ACAACGTCATGAGTTGCGTTT-GGGAAGTTCC---C---AAA------------------------TCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGATTACTGC----CGAAAGCCAGTTGCAACTAAATTAAA---------------------------------AAGTTCTATAC--------------CA-------TGTGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................211299.002992710265821490
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................211217.00217609051970
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGATTACTGC----.................................................................................................19147.004700310430
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.....................................................................................................................................................................20144.004400301400
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................20111.00111000460
.......................................................................................................................................................................................................................................................................AGTTCCACTAAGCAAGTTTT....................................................................................................................................................................2018.0080020060
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGATTACTGC----C................................................................................................2018.0080021050
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................2217.0071020220
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGATTACTGC----CG...............................................................................................2114.0040000130
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC.........................................................................................................................2113.0030300000
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGATTACTGC----CT...............................................................................................2113.0030000030
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................2213.0030000120
.........................................................................................................................................................................................................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT..........................................................................................................................................2613.0030000030
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTA........................................................................................................................2212.0020010010
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGATTACTG......................................................................................................1812.0020000020
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTA...................................................................................................................................................................2212.0020010010
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................2111.0011000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG..........................................................................................................................2211.0010000010
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGATTACTGC----CA...............................................................................................2111.0010000010
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGT.........................................................................................................................2311.0010000010
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTC........................................................................................................................2211.0010000100
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGA.........................................................................................................................2111.0010100000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTG...................................................................................................................................................................2211.0010010000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT.........................................................................................................................2011.0011000000
.........................................................................................................................................................................................................................................................................................TTGAGATC--GTTTTAAAAACAAA..............................................................................................................................................2211.0010000010
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGATTACTA......................................................................................................1811.0010000010
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTT......................................................................................................................................................................1911.0010000010
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTT...................................................................................................................................................................2211.0011000000
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGATTACTT......................................................................................................1811.0010000010
...........................................................................................................................................................................................................................................................................................GAGATC--GTTTTAAAAACAAA..............................................................................................................................................2011.0010000010
......................................................................................................................................................................................................................................................................................................................................TCGTGGGA-TGGATTACAAA----.................................................................................................19190.0510000010
droYak3
CAAG---TG--------------------------------------------------ATGTCAG--T------------------------------------------------------------T----------------------CA--------------------------AAATCGTCATCAGTGGTGTTC-GGGGTATCCC---C---AAA------------------------CCTCTGTCCTACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTTGTGGGA-TGGTCTACCGCAATTCGAAAGACAGTTGTAACTTAATTAAAA--------------------------------AAGTTCCATAG--------------CA-------TGTGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................211393.003931431710063976120000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................21161.00611210154200000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC.........................................................................................................................21127.0027402200100000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG.........................................................................................................................21121.0021210000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................20119.001991801000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................2219.00921310110000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.....................................................................................................................................................................2019.00900001800000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................2217.00730201100000
......................................................................................................................................................................................................................................................................................................................................TTGTGGGA-TGGTCTACCGC.....................................................................................................1915.00500002300000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................2114.00440000000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG..........................................................................................................................2214.00440000000000
.........................................................................................................................................................................................................................................................................................TTGAGATC--GTTTTAAAAACAAAAACT..........................................................................................................................................2613.00330000000000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT.........................................................................................................................2013.00303000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGC.........................................................................................................................2212.00200200000000
.........................................................................................................................................................................................................................................................................................TTGAGATC--GTTTTAAAAACAAA..............................................................................................................................................2212.00220000000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTC...........................................................................................................................2112.00220000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAG..............................................................................................................................1611.00100000000010
.........................................................................................................................................................................................................................................................................................TTGAGATC--GTTTTAAAAACAAAAAC...........................................................................................................................................2511.00110000000000
.........................................................................................................................................................................................................................................................................................TTGAGATC--GTTTTAAAAACAA...............................................................................................................................................2111.00110000000000
.....................................................................................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................2211.00100000100000
......................................................................................................................................................................................................................................................................................................................................TTGTGGGA-TGGTCTACCGCA....................................................................................................2011.00100000100000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTA...................................................................................................................................................................2211.00100000100000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTT...................................................................................................................................................................2211.00100000100000
........................................................................................................................................................................................................................................................................GTTCCACTAAGCAAGTTTT....................................................................................................................................................................1911.00101000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC...........................................................................................................................1911.00100000100000
.........................................................................................................................................................................................................................................................................................TTGAGATC--GTTTTAAAAACA................................................................................................................................................2011.00110000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTA.......................................................................................................................2311.00110000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGTAAA......................................................................................................................2511.00110000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.......................................................................................................................2311.00100001000000
...........................................................................................................................................................................................................................................................................................GAGATC--GTTTTAAAAACAAA..............................................................................................................................................2011.00110000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTG....................................................................................................................................................................2111.00100000100000
droEug1
AAAG---TG--------------------------------------------------A-GAAAG--AGTAAGT------------------------------------------------------T----------------------G--------------------------------------AGCAGCTTTCTGGGGAATCCC---CCTGAAA-----------------TC-----TCTCTGTTCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATCGTTTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACTTCATCAGCTTGAAAGCCTGCTTAAAATAAACTAAGAATGAT-----------------------------------TAT--------------AA-------AGTTSizeHit CountTotal NormTotal
No Reads
droBia1
CTT-AAGTG--------------------------------------------------CTGC-----AGTAAGT------------------------------------------------------T----------------------CT--------------------------ACAATGTCAT-------------GGGAATCTCTGCTCCGCAA------------------------TAGCTGTGCCACGTCCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACTAAAACTTGACACGTTGAGCTCGTTTGTGGCT-TGGCC----CCACTTCA-AAACCAATTTCAACTAAA-----A--------------------------------AAATTCTAAGTAAAAAATAGTTTTACATTTTTTTGATGSizeHit CountTotal NormTotal
No Reads
droTak1
CTAG---TG--------------------------------------------------AAGC-------------------------------------------------------------------------------CTCGAACTCA-----------------------TCAA-CCTACAGCA--------------T-------C---G---AAT------------------------ACTCTGTCCTACGTGCGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGAA-TGG-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GAAG---TA--------------------------------------------------A-------------G-----------------------------------------------------------------------------------------------------TTCCATCGATGTCA-----------C-GGGTAATCTC---CCAAAAA------------------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATCGTT-TTTAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAACTTCAGTTTAACAGAGTCCTACAAATAAACCAAGAAAGTTTACTTATTTCA-------------TATAAGTCCTTTG---------------TA-------AGTASizeHit CountTotal NormTotal
No Reads
droRho1
CAGCAAGT-------------------------------------------------------------------------------------------------------------------------T----------------------AA-------------GAAGTATGTTCT-TTGACGTCG-----------C-TGGGAATCCC---C--GAAA------------------------TCTCTGTCCTACGTACGAGTTCCACTAAGCAAGTTTTGAGATC--GTTTTAAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGA-CGGGCTACTTCAATTCAAAAGAATATTCGAAATAAACCAAGAAAA-TTAATGAGTTTTTGTAAGTA-----------TTCAAAAG--------------CA-------GGTGSizeHit CountTotal NormTotal
No Reads
droFic1
CAAG---TG--------------------------------------------------ATGAAGAAGT------------------------------------------------------------G----------------------AA-------------GCAGTTGGCTCA-GCGATGGCA-----------C-GGGGAGTCCC---C---GAA----------------TTCCCGGTTCCCTGTTCTACGTGCGAGTTCCACTAGGCAAGTTTTGAGATCGTTTTTAAAAAACAAAAACTTGACACGTTGAGCTCGTTCGTGGGA-TGGACAACTCCAGCTT-----------------------------------------TCGCAAGAAATCAACAACAGTTTTAA----------------AA-------AGTGSizeHit CountTotal NormTotal
No Reads
droKik1
TGAG---TT--------------------------------------------------CTTACAG--T------------------------------------------------------------A----------------------TAACTTTATATTTAAGATGTAAGTACA-ATA-------------------AGTGAA-AGT---G---AAG------------------------ACTCTGAGCTACGCGCGAGTTCCACTAAGCAAGTTTTGAGAAT--ATTT-CAATACAAAAACTTGACACGTTGAGCTCGTTTGTGGGGTCAGACAAAAGCAAC-----AATCAGTTAATAAAAAA-----------------------------------ATAAAC-----CTT--------------CA-------ACTASizeHit CountTotal NormTotal
No Reads
droAna3
AAAG---TG---ATTTT--------------------ATAGTTCAAGATAAATTATA----AACAG--AGTAAGTTTGTGTTT------------------------TAGAAA------ATGTGT--------TTATTTTTTTTGGAA-----------------------------------------------------------------------AAT------------------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAGA------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................211153.001531493802423
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................21165.006540015046
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTC........................................................................................................................22122.0022210847
.....................................................................................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................22113.0013100705
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.....................................................................................................................................................................20111.0011000407
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCT.......................................................................................................................2318.008100601
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................2216.006011121
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................2015.005100220
.......................................................................................................................................................................................................................................................................AGTTCCACTAAGCAAGTTTT....................................................................................................................................................................2013.003000300
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT.........................................................................................................................2013.003300000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................2212.002100010
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC.........................................................................................................................2112.002010100
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGTT........................................................................................................................2311.001000100
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAG..............................................................................................................................1711.001000100
...................................................................................................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTCT.......................................................................................................................2111.001000010
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG..........................................................................................................................2211.001000100
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC...........................................................................................................................1911.001000100
.....................................................................................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTTT.....................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.......................................................................................................................2311.001000100
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTG...................................................................................................................................................................2211.001000001
.....................................................................................................................................................................................................................................................................CGAGTTCCACTAAGCAAGTTTG....................................................................................................................................................................2211.001000100
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCA.......................................................................................................................2311.001000100
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGA.........................................................................................................................2111.001000001
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................2111.001000100
droBip1
TAAG---TG---TTTTA------------------------------------------AAGTTAG--T----------GTTT------------------------T-GAAA------AAGTGTGTGTCTTGTAATTTTTTTTGGAA-----------------------------------------------------------------------AAT------------------------ATTCTGTTTTACGTGCGAGTTCCACTAAGCAAGTTTTGAGAAT--TTTTTAAAAACAAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CAGA------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
AAAG---TG--------------------------------------------------AAATAAAAGT----------GACATAGAAACTGAAATAGAAAGGGAAATTGAAATGCAAACTGA-A--------ATATAATTCCTGGAAGCCA----------------------------------------------------------TC---T---AGG------------------------AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGT--ATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG-------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................211110.0011011610172556012
......................................................................................................................................................................................................................................................................GAGTTCCACCATGCAAGTTTT....................................................................................................................................................................21173.00730170350201000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTC...........................................................................................................................20128.0028220140100000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................21116.00160306070000
......................................................................................................................................................................................................................................................................GAGTTCCACCATGCAAGTTT.....................................................................................................................................................................20111.00110703010000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................2218.0080301130000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................2017.0070101140000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG..........................................................................................................................2215.0050302000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................2214.0040100030000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC.........................................................................................................................2114.0040004000000
.....................................................................................................................................................................................................................................................................CGAGTTCCACCATGCAAGTTTT....................................................................................................................................................................2214.0040103000000
...........................................................................................................................................................................................................................AGG------------------------AGCCTGTTCTACGTGC.........................................................................................................................................................................................1913.0030100000002
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGT.........................................................................................................................2313.0030101010000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCT............................................................................................................................1912.0020001010000
.......................................................................................................................................................................................................................................................................AGTTCCACCATGCAAGTTTTG...................................................................................................................................................................2112.0020200000000
......................................................................................................................................................................................................................................................................GAGTTCCACCATGCAAGTTC.....................................................................................................................................................................2012.0020002000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTG........................................................................................................................2212.0020000110000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGA.........................................................................................................................2111.0010010000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC...........................................................................................................................1911.0010000010000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGC.........................................................................................................................2211.0010010000000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCG..........................................................................................................................1911.0010100000000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGTGT.......................................................................................................................2211.0010000001000
........................................................................................................................................................................................................................................................................GTTCCACCATGCAAGTTTT....................................................................................................................................................................1911.0010001000000
......................................................................................................................................................................................................................................................................GAGTTCCACCATGCAAGTTTTG...................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTA........................................................................................................................2211.0010000010000
........................................................................................................................................................................................................................................................................................................GAATCCAAAAACTTGACACGTTGAGCTCC..........................................................................................................................2911.0010010000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTT...........................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTC...........................................................................................................................1811.0010001000000
droPer2
AAAG---TG--------------------------------------------------AAATAAAAGT----------GACATAGAAACTGAAATAGAAAGGCAAATTAAAATGCAAACTGA-A--------ATATAATTCCTGGAAGCCA----------------------------------------------------------TC---T---AGG------------------------AGCCTGTTCTACGTGCGAGTTCCACCATGCAAGTTTTGAGCGT--ATA-TGAATCCAAAAACTTGACACGTTGAGCTCGTGCGTGG-------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................211162.00162292352733
......................................................................................................................................................................................................................................................................GAGTTCCACCATGCAAGTTTT....................................................................................................................................................................21156.005603019322
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................21117.0017010880
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................22115.0015200850
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................20112.0012000291
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTC...........................................................................................................................2019.009000360
......................................................................................................................................................................................................................................................................GAGTTCCACCATGCAAGTTT.....................................................................................................................................................................2017.007000232
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................2217.007000250
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGT.........................................................................................................................2317.007000331
.....................................................................................................................................................................................................................................................................CGAGTTCCACCATGCAAGTTTT....................................................................................................................................................................2217.007000340
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTG........................................................................................................................2213.003000120
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG..........................................................................................................................2212.002000020
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC...........................................................................................................................1912.002000020
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG.........................................................................................................................2112.002200000
......................................................................................................................................................................................................................................................................GAGTTCCACCATGCAAGT.......................................................................................................................................................................1812.002000020
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTC...........................................................................................................................2111.001000010
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCT............................................................................................................................1911.001000100
.......................................................................................................................................................................................................................................................................AGTTCCACCATGCAAGTTTTG...................................................................................................................................................................2111.001010000
droWil2
A-AG---TG--------------------------------------------------ATGAAAT--T------------------------------------------------------------G----------------------AA--------------------------AAGAAATTGAAAGTTACGTTT-------------------AT------------------------ATCCTGTCCTACGCATGAGTTCCACTAAGCAAGTTTTGGGCAT--ATTTCAAAAACAAAAACTTGACACGTTGAGCTCGTCTGTGTGA-CAGA------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................2111452.00145210481217149226
.....................................................................................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................221118.001184303108
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG.........................................................................................................................21185.0085850000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................21163.00631101249
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................22157.0057480306
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................20149.0049461002
...................................................................................................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTCT.......................................................................................................................21131.0031310000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................21126.0026251000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC.........................................................................................................................21123.0023220010
....................................................................................................................................................................................................................................................................ATGAGTTCCACTAAGCAAGTTT.....................................................................................................................................................................22122.0022010021
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................22122.0022412105
.....................................................................................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTTT.....................................................................................................................................................................21122.0022000121
....................................................................................................................................................................................................................................................................ATGAGTTCCACTAAGCAAGTT......................................................................................................................................................................21114.0014000014
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCT.......................................................................................................................2319.00990000
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTT.....................................................................................................................................................................2017.00700016
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTC...........................................................................................................................2014.00440000
...................................................................................................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTCC.......................................................................................................................2114.00440000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG..........................................................................................................................2214.00440000
.....................................................................................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTT......................................................................................................................................................................2014.00400004
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGG.........................................................................................................................2213.00330000
.......................................................................................................................................................................................................................................................................AGTTCCACTAAGCAAGTTTT....................................................................................................................................................................2013.00300012
....................................................................................................................................................................................................................................................................ATGAGTTCCACTAAGCAAGTTTT....................................................................................................................................................................2313.00300003
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGC.........................................................................................................................2213.00330000
.....................................................................................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTTTTT...................................................................................................................................................................2313.00300003
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC...........................................................................................................................1912.00220000
.....................................................................................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTTTTG...................................................................................................................................................................2312.00200002
.....................................................................................................................................................................................................................................................................TGAGTTCCACTAAGCAAG........................................................................................................................................................................1811.00100001
.....................................................................................................................................................................................................................................................................TGAGTTCCACTAAGCAAGTTTTA...................................................................................................................................................................2311.00100001
......................................................................................................................................................................................................................................................................GAGTTCCACTAAGCAAGTTTTT...................................................................................................................................................................2211.00100001
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGTCT.......................................................................................................................2211.00110000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGTCC.......................................................................................................................2211.00110000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT.........................................................................................................................2011.00101000
...........................................................................................................................................................................................................................................................................................GGGCAT--ATTTCAAAAACAAA..............................................................................................................................................2011.00100010
...................................................................................................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTCG.......................................................................................................................2111.00110000
.......................................................................................................................................................................................................................................................TCCTGTCCTACGCATGAGTTCC..................................................................................................................................................................................2211.00100001
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCG.......................................................................................................................2311.00110000
droVir3
TAAG---TT----------------------------------------------------------------------GATATCGAAATT--------------------------------------G----------------------AA--------------------------ATTTCATGTGGTGTCGCTTTCAAGAGCA-GCT---C---GCG------------------------CTTCTGCCCTACGCACGAGTTCCACTAATCAAGTTTTGAGCGG--ATTCGAAAGTCGAAAACTTGACACGTTGAGCTCGTCCGTGGGG-CGG-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................211262.002626787110200200004361101041146000118113000000030000000000000000022031700000033013000000
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTG...................................................................................................................................................................211217.002170232000000000002110817191001916000000000000000000000000000000000010159200000000000000000
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTGA..................................................................................................................................................................221210.00210000000000000005027102418110917000000010000000000000000000000000000042100000000000000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG..........................................................................................................................221110.0011001951000000000023100126708700000001000000001000000000000000000008200000000000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................21197.009701901040000000025626102012600000000000000001000000000000000000003000000000000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................22139.003904000000000000162013005400000000000000000000000000000000001002000000001000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................22137.00370421001000000080030022100000212000000000000000000000000000014300000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................20130.00302200030001000031010011000000321201000000000000000000000000204000000000000000000
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTTT....................................................................................................................................................................20116.00160040000000000021011100000000000000000000000000000000000000006000000000000000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTC...........................................................................................................................21114.00141210000000000004000003000000000000000000000000000000000000002000000001000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAATCAAGTTTT....................................................................................................................................................................21114.00140020000000000021120102000000000000000000000000000000000000003000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG.........................................................................................................................21110.001001000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTGAG.................................................................................................................................................................2319.0090000000000000040020000300000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC.........................................................................................................................2117.0070402000000000000000000000000000000000000000000000000000000001000000000000000000
..............................................................................................................................................................................................................................................................................................................GAAAACTTGACACGTTGAGCTCG..........................................................................................................................2317.0070000000000000010103001000000000000000000000000000000000000001000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTTT.......................................................................................................................2316.0060001000000000010000000000000111000000000000000000000000000001000000000000000000
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTT.....................................................................................................................................................................1915.0050030000000000000000000000000000000000000000000000000000000002000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTA........................................................................................................................2215.0050000000000000010001010000000110000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAATCAAGTTT.....................................................................................................................................................................2014.0040000000000000000100200000000000000000000000000000000000000001000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTC........................................................................................................................2214.0041010010000000000000000000000000000000000000000000000000000100000000000000000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGT.........................................................................................................................2314.0040000000000000010000101100000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTC...........................................................................................................................2014.0040100000000000020001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GTTCCACTAATCAAGTTTTG...................................................................................................................................................................2014.0040040000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTT...................................................................................................................................................................2113.0030000000000000010010000000000000000000000000000000000000000001000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCC.......................................................................................................................2313.0030000010000000000000000000000000001000001000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTGT..................................................................................................................................................................2213.0030000000000000000010000000000000000000000000000000000000000002000000000000000000
..............................................................................................................................................................................................................................................................................................................GAAAACTTGACACGTTGAGCT............................................................................................................................2112.0020000000000000000020000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGTT........................................................................................................................2312.0020000000000000000000001000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................................................................................AAAGTCGAAAACTTGACACGTTGAGCT............................................................................................................................2712.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT.........................................................................................................................2012.0020010000000000000000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCT..........................................................................................................................2212.0020000000000000010000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCA..........................................................................................................................2211.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................CTTGACACGTTGAGCTCGTTT.......................................................................................................................2111.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................CGAGTTCCACTAATCAAGTTT.....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGA.........................................................................................................................2211.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GAGCGG--ATTCGAAAGTCG................................................................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GTTCCACTAATCAAGTTTTGA..................................................................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................AAAGTCGAAAACTTGACACGTTGAGC.............................................................................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGCT........................................................................................................................2211.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGTTTT......................................................................................................................2511.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................G--ATTCGAAAGTCGAAAACTTGA.......................................................................................................................................2211.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAATCAAGTT......................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGG.........................................................................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCT..........................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCT............................................................................................................................1811.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................CGAAAACTTGACACGTTGAGC.............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCG..........................................................................................................................1911.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCT............................................................................................................................1911.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................GAGTTCCACTAATCAAGTTTTG...................................................................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTT...........................................................................................................................1911.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCC............................................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCA.......................................................................................................................2311.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTC...........................................................................................................................1911.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGTC........................................................................................................................2111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTCT.......................................................................................................................2311.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTAAA......................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000001000000000000
droMoj3
CTTC---TC---TCTCTCTCCCGCTGTTTATCCATATCTTGTTCAATATTTATTAAGAGATGGCTG--G------------------------------------------------------------G----------------------TA--------------------------AGTTGCTCAAGAG-----------------CC---C---AATCCTTATCCATACCATATCCACATTTGGCTGTCCTACGAGCGAGTTCCACTAATCAAGTTTTGAGT----GTTCGAAAATCAAAAACTTGACACGTTGAGCTCGTCTGTG--------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................211260.0026078436505240
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................22135.003511021516
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT.........................................................................................................................20111.00111100000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................2018.008502001
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTCG..........................................................................................................................2318.008200501
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................2218.008002312
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGC.........................................................................................................................2117.007000070
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................2115.005201020
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTG...................................................................................................................................................................2115.005201200
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTTT....................................................................................................................................................................2014.004300100
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTCGT.........................................................................................................................2414.004100102
......................................................................................................................................................................................................................................................................GAGTTCCACTAATCAAGTTTT....................................................................................................................................................................2113.003012000
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTTTGA..................................................................................................................................................................2213.003000201
.......................................................................................................................................................................................................................................................................AGTTCCACTAATCAAGTTT.....................................................................................................................................................................1912.002001100
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCT............................................................................................................................2112.002001100
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGTT........................................................................................................................2312.002100001
......................................................................................................................................................................................................................................................................GAGTTCCACTAATCAAGTTT.....................................................................................................................................................................2011.001000100
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTCGC.........................................................................................................................2411.001000010
....................................................................................................................................................................................................................................................................GCGAGTTCCACTAATCAAG........................................................................................................................................................................1911.001000001
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGG.........................................................................................................................2111.001000010
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAG..............................................................................................................................1911.001001000
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCGTT........................................................................................................................2411.001000100
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTC...........................................................................................................................2211.001000100
.....................................................................................................................................................................................................................................................................................................................TGACACGTTGAGCTCGTA........................................................................................................................1811.001100000
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCC............................................................................................................................1811.001000010
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG..........................................................................................................................2211.001100000
droGri2
TGACAAGTGCTAGAGCACTTACG----------------------------------------CTG--AGTAAGTATC---T------------------------------------------------------------TTCGAAATG-AT-------------TCGGTTTGTTCT-TTTACAGCA--------------GTGCA--TC---C---GGG------------------------TGTCTGCCACACTTACGAGTTCCACTATTCAAGTTTTGAGCGT--ATT-TGAAATCAAAAACTTGACACGTTGAGCTCGTGTGTGCGT-TG--------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTCG..........................................................................................................................23143.00431330
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGT.........................................................................................................................21112.001266
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCGTT........................................................................................................................2215.00514
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCGT.........................................................................................................................2215.00523
.......................................................................................................................................................................................................................................................................AGTTCCACTATTCAAGTTTTGA..................................................................................................................................................................2213.00330
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCT............................................................................................................................2112.00202
.......................................................................................................................................................................................................................................................................AGTTCCACTATTCAAGTTTTG...................................................................................................................................................................2112.00220
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTCGT.........................................................................................................................2412.00211
...............................................................................................................................................................................................................................................................................................................AAAACTTGACACGTTGAGCTCG..........................................................................................................................2212.00220
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCTCG..........................................................................................................................2012.00220
.................................................................................................................................................................................................................................................................................................................AACTTGACACGTTGAGCT............................................................................................................................1811.00110
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGC.............................................................................................................................2011.00110
......................................................................................................................................................................................................................................................................GAGTTCCACTATTCAAGTTTT....................................................................................................................................................................2111.00110
..................................................................................................................................................................................................................................................................................................................ACTTGACACGTTGAGCTCGT.........................................................................................................................2011.00110
..............................................................................................................................................................................................................................................................................................................AAAAACTTGACACGTTGAGCTC...........................................................................................................................2211.00110
................................................................................................................................................................................................................................................................................................................AAACTTGACACGTTGAGCTCG..........................................................................................................................2111.00110

Generated: 10/20/2015 at 07:00 PM