ID:

dsi-mir-963

 Coordinate:

2l:5446707-5446824 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

antisense_to_intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-24.1 -23.7 -23.7

Flybase annnotation

Antisense to intron [2l_5446685_5450164_-]; utr5 [utr5_plus_812]; utr5 [utr5_plus_813]; Antisense to CDS [2l_5446587_5446684_-]

No Repeatable elements found

Sense Strand Reads

TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGAGGACATGGCAATTACTACTGATTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGATCGAAACATCTGTATATACCTTTGATCCGGTTGGACAAAAGTGCATCTTCTAGTGGGTAAATCCATGTGGTTATGACAAGTCAATCAAAATCTTGGTCCAACTTG

****************************************************************...((((((((......((((((.(((.(((((.(((((............))))))))))))).))))))......)))))))).....**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001

Testis

 SRR902009

testis

 M024

male body		 SRR618934

dsim w501 ovaries

 SRR553486

Makindu_3 day-old ovaries

 SRR553485

Chicharo_3 day-old ovaries

 O002

Head

 GSM343915

embryo

 M025

embryo

 M053

female body

 M023

head

 SRR902008

ovaries

 SRR553487

NRT_0-2 hours eggs

 SRR553488

RT_0-2 hours eggs
...............................................................................ACAAGGTAAATATCAGGTTGTTTC................................................................................................................... 24 0 1 766.00 766 128 464 99 22 10 9 0 19 7 7 0 1 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTT.................................................................................................................... 23 0 1 752.00 752 22 644 20 8 32 20 2 0 0 3 0 0 1 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTCC.................................................................................................................. 25 0 1 641.00 641 634 0 0 0 1 0 6 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTT..................................................................................................................... 22 0 1 464.00 464 239 185 23 5 2 4 2 0 1 1 2 0 0 0
...............................................................................ACAAGGTAAATATCAGGT......................................................................................................................... 18 0 1 337.00 337 326 2 1 3 0 0 5 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGT...................................................................................................................... 21 0 1 295.00 295 231 44 8 5 1 0 3 0 0 1 0 1 1 0
...............................................................................ACAAGGTAAATATCAGGTTG....................................................................................................................... 20 0 1 194.00 194 178 9 1 0 0 0 5 0 1 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTC................................................................................................................... 25 0 1 171.00 171 158 6 2 2 0 0 3 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTT........................................................................................................................ 19 0 1 105.00 105 101 2 0 0 0 0 2 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGT......................................................................................................................... 19 0 1 93.00 93 91 0 0 1 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGAT............................................................................... 22 0 1 82.00 82 0 37 27 0 5 6 0 0 4 1 1 0 1 0
..............................................................................AACAAGGTAAATATCAGGTTG....................................................................................................................... 21 0 1 74.00 74 69 1 2 1 0 0 1 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGT...................................................................................................................... 22 0 1 72.00 72 55 4 6 2 0 1 3 0 0 0 1 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTT..................................................................................................................... 23 0 1 63.00 63 30 23 3 4 1 1 1 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGG.......................................................................................................................... 18 0 1 50.00 50 50 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGA................................................................................ 21 0 1 47.00 47 19 20 5 0 0 0 1 0 0 0 2 0 0 0
..............................................................................AACAAGGTAAATATCAGGTT........................................................................................................................ 20 0 1 41.00 41 39 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTT.................................................................................................................... 24 0 1 36.00 36 4 19 2 5 1 3 1 0 0 0 0 1 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTCA.................................................................................................................. 25 1 1 34.00 34 0 34 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTCC.................................................................................................................. 26 0 1 31.00 31 30 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGATC.............................................................................. 23 0 1 27.00 27 18 2 4 0 1 0 0 0 2 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTT................................................................................................................... 24 1 1 26.00 26 0 26 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTA................................................................................................................... 24 1 1 17.00 17 0 16 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................AAACATCTGTATATACCTTTGA................................................................................ 22 0 1 12.00 12 1 10 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTCT.................................................................................................................. 25 1 1 11.00 11 0 9 0 0 1 1 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTA.................................................................................................................... 23 1 1 10.00 10 0 9 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................ACATCTGTATATACCTTTGATC.............................................................................. 22 0 1 9.00 9 0 5 4 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGAAAATATCAGGTTGTTT.................................................................................................................... 23 1 1 8.00 8 0 8 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTCT.................................................................................................................. 26 1 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGAAAATATCAGGTTGTTTC................................................................................................................... 24 1 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTC.................................................................................................................... 23 1 1 5.00 5 0 4 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTAA................................................................................................................... 24 2 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTG................................................................................. 20 0 1 5.00 5 3 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................GTAAATATCAGGTTGTTTC................................................................................................................... 19 0 1 5.00 5 0 0 0 5 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTT................................................................................... 18 0 1 4.00 4 3 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTA.................................................................................................................... 24 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAACATCTGTATATACCTTTGAT............................................................................... 23 0 1 4.00 4 0 2 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTAA.................................................................................................................. 25 2 1 4.00 4 0 3 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................ACAAGGCAAATATCAGGTTGTTTC................................................................................................................... 24 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AAATATCAGGTTGTTTC................................................................................................................... 17 0 1 4.00 4 0 0 0 4 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTCAA................................................................................................................. 26 2 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGATT.............................................................................. 23 1 1 3.00 3 0 2 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTAAA................................................................................................................. 26 3 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CAAGGTAAATATCAGGTTGTTTCC.................................................................................................................. 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TAAATATCAGGTTGTTTC................................................................................................................... 18 0 1 3.00 3 0 0 1 2 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGGAAATATCAGGTTGTTT.................................................................................................................... 23 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGG...................................................................................................................... 22 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGGAAATATCAGGTTGTTTC................................................................................................................... 24 1 1 3.00 3 0 2 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................AGCATCTGTATATACCTTTGAT............................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTCAAA................................................................................................................ 27 3 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TAAATATCAGGTTGTTT.................................................................................................................... 17 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTCA.................................................................................................................. 26 1 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGC...................................................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ACATCTGTATATACCTTTGATCCG............................................................................ 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTAA.................................................................................................................. 26 2 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................GGTAAATATCAGGTTGTT..................................................................................................................... 18 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGAC............................................................................... 22 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTCCT................................................................................................................. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGATGTTT.................................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ACATCTGTATATACCTTTGA................................................................................ 20 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTG................................................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ACATCTGTATATACCTTTGAT............................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................CAAGGTAAATATCAGGTTGTTTC................................................................................................................... 23 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AAGGTAAATATCAGGTTGTTT.................................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTTTTTC................................................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTAGTTT.................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTTTTTTC.................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACACGGTAAATATCAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTT....................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ACATCTGTATATACCTTTGATCA............................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................TGAAAGAGAGGACATGGCAATTAC..................................................................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTTTT................................................................................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AGGTAAATATCAGGTTGTTTC................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGAAAATATCAGGTTGTTTT................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAGATATCAGGTTGTTTC................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTA..................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................CAAGGTAAATATCAGGTTGTT..................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGAAAGTATCAGGTTGTTTC................................................................................................................... 24 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGCTGTTT.................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAACTATCAGGTTGTTTC................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAGATATCAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTA................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTGGTT..................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................TCTGAAAGAGAGGACATGGCAATTA...................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAATGTAAATATCAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGC...................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CAACGGTAAATATCAGGTTGTTTC................................................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................ACAAGGAAAATATCAGGTTGTTTCA.................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCATGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................................AACAAGTTAAATATCAGGTTGTTTA................................................................................................................... 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGGTT.................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGCTAAATATCAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACTTTTGAT............................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCACGTTGTT..................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTAAA................................................................................................................. 27 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...............................................................................AGAAGGTAAATATCAGGTTGTTTC................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTAA.................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAGATATCAGGTTGTTTCA.................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGA...................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................AAAAACAAGGTAAATATCAGGTTGTTTCAA................................................................................................................. 30 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................ATATCAGGGTGTGTCCTGTATA............................................................................................................ 22 3 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGGTGTTTC................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTCTC..................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAGTATCAGGTTGTTTC................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AAGGTAAATATCAGGTTGTTTCAC................................................................................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGGAAATATCAGGTTGTT..................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................AAGGTAAATATCACGTTGTTT.................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAAGATCAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATACACCTTTGAT............................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGG................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAGGGTAAATATCAGGTTGTT..................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTCG.................................................................................................................. 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................AAACATCTGTATATACCTTTGAA............................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATTAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGATTGT...................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTTAG................................................................................................................. 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................TCTGAAAGAGAGGACATGGCAATTAC..................................................................................................................................................................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAGGGTAAATATCAGGTTGTTTC................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTTGAA............................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTTTC..................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................AGAAGGTAAATATCAGGTTGTA..................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AATATCAGGTTGTTTC................................................................................................................... 16 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGG.......................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTAAATACCTTTGAT............................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCAGGTTGTTTTT.................................................................................................................. 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTGAATATCAGGTTGTTT.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................AACAACGTAAATATCAGGTTGTT..................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTT.................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTTT.................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................AAATATCAGGTTGTTTCC.................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................ACAAGGTAAATATCAGGTTGTTTTA.................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................AACAAGGTAAATATCA............................................................................................................................ 16 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................AACATCTGTATATACCTTAT................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................ACTTTGGATGATCTGG.......................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................CACCTTTGATCCGGT.......................................................................... 15 1 5 0.20 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................CCCTTTGATCCGGTT......................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................TTGATCCGGTTGTCCAAA.................................................................. 18 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................TCAGGTTGTTTCTTGTAG............................................................................................................. 18 2 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................AATAGAGCTTTGATCCGG........................................................................... 18 3 20 0.15 3 0 0 0 0 0 0 0 0 1 0 2 0 0 0
......................................................................................AAATATCAGGTGGTATTCTG................................................................................................................ 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................TGATCCGGTTGTCCAAA.................................................................. 17 2 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................ACCTTTTATCCGGTT......................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................................ACAGTGCATCTGCTAGT................................................... 17 2 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............CCGAACTTTGGGAGAA.............................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

ACGTCCTCAAGAGGCTTGAAACCTTCTAGACCTTCTCTCCTGTACCGTTAATGATGACTAAAAGAATCAGATTAGATTTTGTTCCATTTATAGTCCAACAAAGGACATAATCTAGCTTTGTAGACATATATGGAAACTAGGCCAACCTGTTTTCACGTAGAAGATCACCCATTTAGGTACACCAATACTGTTCAGTTAGTTTTAGAACCAGGTTGAAC

****************************************************************...((((((((......((((((.(((.(((((.(((((............))))))))))))).))))))......)))))))).....**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009

testis

 M053

female body

 SRR553486

Makindu_3 day-old ovaries

 M023

head

 SRR553485

Chicharo_3 day-old ovaries
...........................................................................................AGTACAACAAAGGACAGAAT........................................................................................................... 20 2 1 1.00 1 1 0 0 0 0
................................................................................................................TAGCTTTGTTGTCATATAT....................................................................................... 19 2 6 0.17 1 0 1 0 0 0
................................................................................................................TAGCTTTGTCGTCATATA........................................................................................ 18 2 8 0.13 1 0 1 0 0 0
..................................................................................................................................................................................ACGCCAATACGGTTCAATTA.................... 20 3 8 0.13 1 1 0 0 0 0
.............................................................................................................AACTAGCTGTGTAGACA............................................................................................ 17 2 14 0.07 1 0 0 1 0 0
..............................................................................................................................TATAAAAAAACTAGGCCAAC........................................................................ 20 3 20 0.05 1 0 0 0 0 1
............................................................................................................................................GACAACCTGGTATCACGTA........................................................... 19 3 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 2l:5446657-5446874 + dsi-mir-963 Known_mirbase TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGA-GGA--C-ATG----G-------------C--AATTA---C---------------------------TACTGATT--TTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TCGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCAT--C-TTCTAGT-------------GGGT-AA-ATCCATGTG------GTTATG------ACA------AGTCAATCAAAAT----CTTGGTCCAACTTG
droSec2 scaffold_5:3719643-3719861 + dse_67 confident TGAAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGA-GGA--C-ATG----G-------------C--AATTA---C---------------------------TACTGAT-TTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TAGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCAT--C-TTCTAGT-------------GGGT-AA-ATCCATGTG------GTTATG------ATA------AGTCAATCAAAAT----CTTGGTCCAACTTG
dm3 chr2L:5641925-5642124 + dme-mir-963 Known_mirbase TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGA-GGA--T-ATG----G-------------C--AATTA---C---------------------------AACTAA-TTTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTCGA---TCGAAACATCTGTATATACCTTTGTTCCGATT-GGACAAA--AGTGCGT--C-TTCTAGT-------------TGGT-GA-T------------------------------------ACCAATA-ACAT----ATTGGTCCAACTTG
droEre2 scaffold_4929:5730318-5730539 + der_232 confident TGCAGGAGTTCTCCGAACTTGGGAAGATCTGGAAGAGA-GGA--T-GTG----G-------------G--CATCA---G---------------------------TGCTGC-TTGTTCTTAGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTGTATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCAT--C-TTCTAGT-------------TGGTTAC-ATCCTTGCG------TTAGTG------ATC------AATCAATA-ACGT----TTTGGTCCCACTTG
droYak3 2L:13551146-13551357 - dya_63 confident TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGA-GGA--A-GTG----G-------------G--TATCA---C---------------------------TACTGCATTGTTCTTGGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCAT--C-TTCAAGT----------------T-AT-ATCC-------------TATG------ATC------AATCAATG-AAAT----CTTGGTCCCACTTG
droEug1 scf7180000409063:318271-318489 + TGCAGGAGTTCCCCGAACTTTGGAAGATCTGCAAGGGA-GGAGA---GA----A-------------T--ACTGA---G---------------------------TAGTGACTTGTTCTTCTTCTAATCTAGAACAAGGTATATATCAGATTGTTTCCTATATTCGACGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGAGCAC--C--CCTCGA-------------AAGT-AATACTCGAGCA------ATA----------CC------AGTAATAATAATC----CGAGGTCAAACTTG
droBia1 scf7180000302422:3831597-3831827 + TGCAAGAGCTCTCCGAACTTTGGAAGATCTGCGAGAAA-GTGGA----G----AA-----AAG----T--ACTTAGCAC---------------------------TACTGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGCTTGTTTCCTATATTTGAAGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACATA--AGAGCAA--C-TTCTCAA-------------TAGC-TA--TGCATGCTG---CAATGGCG------ATA------AACTGATAAAACC----GACTGTCAAACTTG
droTak1 scf7180000415871:386286-386509 + TGCAAGAGCTCTCCGAACTTGGGAAGATCTGCAAGAGA-GGA--G-GAA----A-------------T--AATAA---G---------------------------CACTGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATTTTCGACGGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAAAAAGAGCAA--C-TCCTCCT-------------AAGT-TA--TGCATGCT------ATTGCG------CCA------AATTAATATAAAC----CGAGGTCTAACTTG
droEle1 scf7180000490753:31530-31747 + TGCAAGAGCTCACCGAACTTTGGAAGATCTGCAAGGGA-AAAGT----G----G-------------G--AAAGA---G---------------------------TACTGAATGGTTCTCCATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATGATCGATGATTGAAACATCTGTATCTACCTCTGTTTCGAAT-GGACAAA--AGGCCAG--C-TCCAACA-------------AAGT-AA-C----TATC------GTTTTG------TCA------AATTATTTAAACC----AGAGGTCATACTTG
droRho1 scf7180000778253:32483-32701 - TGCAAGAGTTCCCCGAACTTTGGAAGATCTGCAAGGAA-GGAGA----A----GA---------------AATGA---G---------------------------TACTGACTGGCTCTCGATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTCAACCGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGACCAA--C-TCCACCA-------------TAAT-AA-ATTATT---------GTGTTG------CCA------AATTATTCAAGCC----CAAGGTCATACTTG
droFic1 scf7180000453932:196542-196770 - TGCAACAGCTCTCCGAACTTGGGAAGATCTGGAAGAGG-GGAGA----G----AT---------------GATGA---G------------------------T--GCCTCACTCGCTTTTAATCTAATCTAAAACAAGGTATTTATCAGGTTGTTTCCTATATTCGAAGTTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGCGCAA--C-GCCACTC-TAATTAAAA---TAAT-CA-GTCCCA---------GTAATG------AGA--ATCCA----TCTCAGCC----CAATGGCGAACTTG
droKik1 scf7180000302389:430270-430481 - TGCAGGAGCTCGCCGAACTTGGGCAGATCTGTAAGAGA-GGAAT----G----AG-------------------------------------------------------GGTGGGTCATCAGTGCAGTCTAGAACAAGGTACATATCAGG-TGTTTCCTGCATTCGAAAATCGAAACATCTGTATCTACCTTAGTTTCGAAT-GGACTCA--AAAGCAA--C-TCTAACC-------------C----AC-AAGAGTTTG------A-----GGTGG-AAA------AGGTAATTCAGACAGAGATAAGTCAGACTTG
droAna3 scaffold_12916:11085375-11085593 + dan_98 confident TGCAAGAGCCCGCCAAACTTTGGAAGATCTGTAAAAAT-GGT--TTATA----G---------TCATT--AATTA---G---------------------------TTAAAAAGTGTTCTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATT-AAACTAA--AGAGCTA--C-TAAGAAT-----------------------ACGAGTG------TTC---GCGGGATGAGCATC----------GAAT----CAAAGTCAAACTTG
droBip1 scf7180000396572:743149-743355 + TGCAGAAGCCCACCAAACTTTGGAAGATCTGTAAATAT-TT-----GTA----G---------TC--------TG---G---------------------------TTCAAATATGTTCTTGATTTAATCTAAAACAAGGTACATATCGGG-TGTTTCCTGCATTTTAAGATTGAAACATCTGTATCTACCTTTGTTTCGATT-TAACTAA--AGAGCTA--C-ACAG-AT-----------------------AAAAGTG------TTC---ATCGGA-AAGAATCCA----------TC----AAAAGTCACACTTG
dp5 4_group4:3181638-3181697 - TGCAAGAGTTCGCCAAACTTTGGAAGATCTAAGAAGAG-GAAAA----G----AT----AATG----T--GATTA---A---------------------------TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_10:2200517-2200623 - TGCAAGAGTTCGCCAAACTTTGGAAGATCTAAGAAGAG-GAAAA----G----AT----AATG----T--GATTAATAC---------------------------AAGTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------CTG---ATTGGA-AGGGAT---CCCC----GTGCCAAATAGAGCCAAAATTA
droWil2 scf2_1100000004521:8625021-8625268 - dwi_93 confident TGCAGTAATTCACCAAATTTGGGTAAATCTGCAAGCAA-ATTGA----AAAAGAT----AATA----TGAAATCA---T------TAT-TAATCATAGTTAATTGAGTTAATTGAATTCTAATTCTAGTCTAAAACAAGGTACATATCAGGTTGTTTCGTATATTTGAAGCCTGAAACATCTGTATCTACCTTTGTTTCGAATAGGACTAA--AGAGTTT--TCTTTAAGC-------------C----CA-ACACATTTG-TTG--TCTGTG------TCA-----------GT--TGAA----CAAGGTCAAACTTG
droVir3 scaffold_12963:3616277-3616497 + dvi-mir-963 Known_mirbase TGCAGGAGTTCTCCAAACTTGGGCAGATCTGTAAGGTG-AACAA----A----GAA---ATTG----G--AGTTAATGTA-----CGGATGGGCATA------------------AACAACAATCTAATCTGAAACAAGGTACATATCAGAGTGTTTCTTAAATTTGATTATTGAAACCTCTGTATATACCTTTCATTGGATT-AAACTGA--TAAGCACATG-TTTCA-A-------------AA-G-TT--TTCATATT-----------G------AAA--ATACA----------------TTAAGTTTAACTTA
droMoj3 scaffold_6500:14019285-14019533 + dmo_12 confident TGCAGGAGTTCTCCAAACTTGGGCAAATCTGCAAATTG-AAATG----A----GAAATGAAGG----G--AATCG---G-GTTAACTT-TGGCAATTGGAGTGCG-CACTGA------ATCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATT-CAACCGA--AAGTCCA--T-AAA-TATTGATATATGATGATGAT-T---TTC---------CAATTGTG-----ATGA--AATCA----------------TTGAGTTCAACTTA
droGri2 scaffold_15252:3148104-3148335 + dgr_53 confident TGCAGGAGTTCGCCAAATTTTGGCAGATCTGTAATGCAGAACAA----ATAAAAG----ATTA----GAAAGTGA---A------CAG-TGAACATAACAAAGCA---------AAATAACAGTCTAATCCAAAACAAGGTACATATTAGAGCGTTTCCTATCTTTGAGTATTGAAACCTCTGTATATACCTTCAT-TCGATT-CGACTGA--TAATCTC--A-TTAAAAT----------------C-AT--TTCAG---------TTG---ATTAGAAGA--GTGCA----------------TTATGTCAAACTTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGA-GGA--C-ATG----G-------------C--AATTA---C---------------------------TACTGATT--TTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TCGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCAT--C-TTCTAGT-------------GGGT-AA-ATCCATGTG------GTTATG------ACA------AGTCAATCAAAAT----CTTGGTCCAACTTGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTC.................................................................................................................................................................241766.007660997712809100022191464000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTT..................................................................................................................................................................231752.0075202003222203210800644000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCC................................................................................................................................................................251641.006410000634601000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTT...................................................................................................................................................................221464.004642231123924200500185000
......................................................................................................................................ACAAGGTAAATATCAGGT.......................................................................................................................................................................181337.003370100326500003002000
......................................................................................................................................ACAAGGTAAATATCAGGTTGT....................................................................................................................................................................211295.0029508012313011050144000
......................................................................................................................................ACAAGGTAAATATCAGGTTG.....................................................................................................................................................................201194.001940110178500000009000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTC.................................................................................................................................................................251171.001710200158300002006000
......................................................................................................................................ACAAGGTAAATATCAGGTT......................................................................................................................................................................191105.001050000101200000002000
.....................................................................................................................................AACAAGGTAAATATCAGGT.......................................................................................................................................................................19193.0093000091100001000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGAT..........................................................................................................................22182.00821274100651000037000
.....................................................................................................................................AACAAGGTAAATATCAGGTTG.....................................................................................................................................................................21174.0074020069100001001000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGT....................................................................................................................................................................22172.0072160055310002004000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTT...................................................................................................................................................................23163.00630300301110040023000
.....................................................................................................................................AACAAGGTAAATATCAGG........................................................................................................................................................................18150.0050000050000000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGA...........................................................................................................................21147.00472500191000000020000
.....................................................................................................................................AACAAGGTAAATATCAGGTT......................................................................................................................................................................20141.0041000039000000002000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTT..................................................................................................................................................................24136.0036020041310050119000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCA................................................................................................................................................................25134.0034000000000000034000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTCC................................................................................................................................................................26131.0031000030100000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGATC.........................................................................................................................23127.0027042018001000002000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTT.................................................................................................................................................................24126.0026000000000000026000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTA.................................................................................................................................................................24117.0017000000100000016000
..............................................................................................................................................................................AAACATCTGTATATACCTTTGA...........................................................................................................................22112.0012010010000000010000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCT................................................................................................................................................................25111.001100000011000009000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTA..................................................................................................................................................................23110.001000000010000009000
................................................................................................................................................................................ACATCTGTATATACCTTTGATC.........................................................................................................................2219.00904000000000005000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTCT................................................................................................................................................................2616.00600000000000006000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTC..................................................................................................................................................................2315.00500000000001004000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTAA.................................................................................................................................................................2415.00500000000000005000
...............................................................................................................................................................................AACATCTGTATATACCTTTG............................................................................................................................2015.00500003010000001000
...........................................................................................................................................GTAAATATCAGGTTGTTTC.................................................................................................................................................................1915.00500000000005000000
...............................................................................................................................................................................AACATCTGTATATACCTT..............................................................................................................................1814.00401003000000000000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTA..................................................................................................................................................................2414.00400000000000004000
..............................................................................................................................................................................AAACATCTGTATATACCTTTGAT..........................................................................................................................2314.00402000000000002000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTAA................................................................................................................................................................2514.00400000010000003000
.............................................................................................................................................AAATATCAGGTTGTTTC.................................................................................................................................................................1714.00400000000004000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCAA...............................................................................................................................................................2613.00300000000000003000
...............................................................................................................................................................................AACATCTGTATATACCTTTGATT.........................................................................................................................2313.00300100000000002000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTAAA...............................................................................................................................................................2613.00300000000000003000
.......................................................................................................................................CAAGGTAAATATCAGGTTGTTTCC................................................................................................................................................................2413.00300003000000000000
............................................................................................................................................TAAATATCAGGTTGTTTC.................................................................................................................................................................1813.00301000000002000000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGG....................................................................................................................................................................2213.00303000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCAAA..............................................................................................................................................................2712.00200000000000002000
............................................................................................................................................TAAATATCAGGTTGTTT..................................................................................................................................................................1712.00200000002000000000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTCA................................................................................................................................................................2612.00200000011000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGC....................................................................................................................................................................2112.00202000000000000000
................................................................................................................................................................................ACATCTGTATATACCTTTGATCCG.......................................................................................................................2412.00200002000000000000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTAA................................................................................................................................................................2612.00200000001000001000
..........................................................................................................................................GGTAAATATCAGGTTGTT...................................................................................................................................................................1812.00200000000001001000
...............................................................................................................................................................................AACATCTGTATATACCTTTGAC..........................................................................................................................2212.00202000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCCT...............................................................................................................................................................2612.00200002000000000000
................................................................................................................................................................................ACATCTGTATATACCTTTGA...........................................................................................................................2012.00201000000000001000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTG.................................................................................................................................................................2412.00200000000000002000
................................................................................................................................................................................ACATCTGTATATACCTTTGAT..........................................................................................................................2112.00201000000000001000
.......................................................................................................................................CAAGGTAAATATCAGGTTGTTTC.................................................................................................................................................................2312.00201000000000001000
........................................................................................................................................AAGGTAAATATCAGGTTGTTT..................................................................................................................................................................2112.00200010000000001000
.....................................................................................................................................AACAAGGTAAATATCAGGTTT.....................................................................................................................................................................2111.00100000000000001000
................................................................................................................................................................................ACATCTGTATATACCTTTGATCA........................................................................................................................2311.00100000000000001000
.........................................................................................................................................AGGTAAATATCAGGTTGTTTC.................................................................................................................................................................2111.00100000000001000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTA...................................................................................................................................................................2211.00100000000000001000
.......................................................................................................................................CAAGGTAAATATCAGGTTGTT...................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTA.................................................................................................................................................................2511.00100000000000001000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGC....................................................................................................................................................................2211.00101000000000000000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTAAA...............................................................................................................................................................2711.00100000000000010000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTAA..................................................................................................................................................................2311.00100000000000001000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGA....................................................................................................................................................................2211.00100000000000001000
........................................................................................................................................AAGGTAAATATCAGGTTGTTTCAC...............................................................................................................................................................2411.00100000000000001000
...............................................................................................................................................................................AACATCTGTATATACCTTTGG...........................................................................................................................2111.00101000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCG................................................................................................................................................................2511.00100000000000001000
..............................................................................................................................................................................AAACATCTGTATATACCTTTGAA..........................................................................................................................2311.00100000000000001000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTTAG...............................................................................................................................................................2611.00100000000000001000
...............................................................................................................................................................................AACATCTGTATATACCTTTGAA..........................................................................................................................2211.00100000000000001000
..............................................................................................................................................AATATCAGGTTGTTTC.................................................................................................................................................................1611.00100000000001000000
......................................................................................................................................ACAAGGTAAATATCAGG........................................................................................................................................................................1711.00100000000000001000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTTT................................................................................................................................................................2611.00100000000000001000
...............................................................................................................................................................................AACATCTGTATATACCTTT.............................................................................................................................1911.00100001000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTTT................................................................................................................................................................2511.00100000000000001000
.............................................................................................................................................AAATATCAGGTTGTTTCC................................................................................................................................................................1811.00100001000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTTA................................................................................................................................................................2511.00100000000000001000
.....................................................................................................................................AACAAGGTAAATATCA..........................................................................................................................................................................1620.50100000000000001000
...............................................................................................................................................................................AACATCTGTATATACCTTAT............................................................................................................................2020.50100000000000001000
droSec2
TGAAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGA-GGA--C-ATG----G-------------C--AATTA---C---------------------------TACTGAT-TTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTAGA---TAGAAACATCTGTATATACCTTTGATCCGGTT-GGACAAA--AGTGCAT--C-TTCTAGT-------------GGGT-AA-ATCCATGTG------GTTATG------ATA------AGTCAATCAAAAT----CTTGGTCCAACTTGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTC.................................................................................................................................................................241255.0025551288834
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTT..................................................................................................................................................................231139.00139112585
......................................................................................................................................ACAAGGTAAATATCAGGTTGTT...................................................................................................................................................................22123.002302210
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTT..................................................................................................................................................................24119.00191981
......................................................................................................................................ACAAGGTAAATATCAGGTTGT....................................................................................................................................................................21114.001401301
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTT...................................................................................................................................................................23111.001101100
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTC.................................................................................................................................................................2519.0091530
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCT................................................................................................................................................................2517.0070601
.....................................................................................................................................AACAAGGTAAATATCAGGTTGT....................................................................................................................................................................2215.0051301
...............................................................................................................................................................................AACATCTGTATATACCTTTGAT..........................................................................................................................2212.0020110
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTC..................................................................................................................................................................2312.0020101
......................................................................................................................................ACAAGGTAAATATCAGGTT......................................................................................................................................................................1911.0010010
......................................................................................................................................ACAAGGTAAATATCAGGTTG.....................................................................................................................................................................2011.0010100
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTT.................................................................................................................................................................2511.0010100
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTA..................................................................................................................................................................2311.0010001
.....................................................................................................................................AACAAGGTAAATATCAGGTT......................................................................................................................................................................2011.0010010
......................................................................................................................................ACAAGGTAAATATCAGGTTT.....................................................................................................................................................................2011.0010100
..............................................................................................................................................................................AAACATCTGTATATACCTTTGA...........................................................................................................................2211.0010100
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTA.................................................................................................................................................................2511.0010010
..........................................................................................................................................GGTAAATATCAGGTTGTTTT.................................................................................................................................................................2011.0010100
.....................................................................................................................................AACAAGGTAAATATCAGGTTG.....................................................................................................................................................................2111.0010100
.......................................................................................................................................CAAGGTAAATATCAGGTTGTTTC.................................................................................................................................................................2311.0011000
......................................................................................................................................ACAAGGTAAATATCAGGT.......................................................................................................................................................................1811.0010010
dm3
TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGA-GGA--T-ATG----G-------------C--AATTA---C---------------------------AACTAA-TTTTTCTTAGTCTAATCTAAAACAAGGTAAATATCAGGTTGTTTCCTGTATTCGA---TCGAAACATCTGTATATACCTTTGTTCCGATT-GGACAAA--AGTGCGT--C-TTCTAGT-------------TGGT-GA-T------------------------------------ACCAATA-ACAT----ATTGGTCCAACTTGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTC.................................................................................................................................................................2416266.006266001005000015400000000001700000000000312321962726212234189500010000000000000000000386101901200132190143737157006131215104118284182301540000000011000000000000000000031717520351525000000000002505000191600021000200342106182000570546000000211000000001442140994661775421723021213700000000010200121266031460000000000000000001005935922711390190001000003418100612254423144320014470000000000092984712124503400
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTT..................................................................................................................................................................2315016.005016000004000009000000000014050000000000008200071100210183531000000000000000000000004534060000000310007824722049690020513061210290000301000000000000000000001021084103135140000080000049060003301010600000032762571300015405250000000600000000096006401812943142136081000000001001000002800200000000010100000010003819672663310201000000000110610121627115612871030034311000000000001015326623902010
......................................................................................................................................ACAAGGTAAATATCAGGTTGTT...................................................................................................................................................................2212059.0020590000000000020000000010338500000000000000000110014040122000000000000000000000001002000000000000013002100043400200407300340000000011000000000000000000004105701000000000000021010004000003000000172126230008801960000000100000000012511862791132122200000000000000010700300000000000000100000019106417017270000010000124100261419286374400024300000000000701422201900007
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTT..................................................................................................................................................................241634.006340000000000030000000000020000000000001000123010400040000000000000000000000000100105011000004103601170002000030410160001000000001000000000000000000000141260000000000000003007000711010400000001062591000220535000000000000000032001171180825160000000000000000010020000000000000000000001501050000000000000600000026332500040000000000000020000200000
......................................................................................................................................ACAAGGTAAATATCAGGTTGT....................................................................................................................................................................211613.0061300000000000100000000000340000000000001000004000000000000000000000000000000000000000001000001007004000002000011111003000000000000000000000000000001100261200000000000000000000200000000001001838200001804800000000000000200321022161531010000000000000000000040000000000000000000007591104921000000010000130010121119216210011510000000000020103020900000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTC.................................................................................................................................................................251415.00415000000000006000000000000000000000001000021121022000110000000000000000000000000010000100000000230020001000000010300000000000000000000000000000010013203130050000000000000000000300000000000002002810001018000000130000000008250191011551931417000000000000000002900700000000000000000000041100020100000000000210002012154000010001000000000040000100000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTT...................................................................................................................................................................231351.00351000000000005000000000001800000000000010000100001000000000000000000000000000000220020000000000070070000110010030410040000000000000100000000000000000121000400000000000000000004000001000010256060000015062000000000000000001700031800020000000000000000000000000000000000000000000500020000000000100200001007231600111000000000000040200000010
.....................................................................................................................................AACAAGGTAAATATCAGGTTGT....................................................................................................................................................................221127.001270000010000010000000000010000000000000000000000000001000000000000000000000000000000000000000000000400000000001000000300000000000000000000000000000111001000000000000000000000020000000000000110130000120150000000000000000011211000300000000000000000000000000000000000000000000000300030000000000000100000002141300002000000000001010000000000
................................................................................................................................................................................ACATCTGTATATACCTTTGTTCT........................................................................................................................231101.0010100000000000000000000000200000000000000000000000000000000000000000000000000000223201000000000002003000102000003031100001000000000000000000000000000000000000000000000000101000000000000000005090000002000000000000000000200351120035000000000000000000000000000000000000000000050000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGTT..........................................................................................................................22189.008900000000000000000000000100000000000000001000000000000000000000000000000000000651200000000000001000000300000000000000000000000000000000000000000000000100000000000000000000000000000000000021030000306000000000000000000200004232005000000000000000000000000000000000000000000030000000000000000000000000040000010000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTT.................................................................................................................................................................24177.007700000000100100000000000000000000000000000030000000000000000000000000000000000000000000000001010000000030000000100000000000000000000000000000000000000000000000000000001000000010000000000090130000201000000000000000000010000060020000000000001000002001000000000000000000000130100010000000000010000100150200000000000000000000000000100
......................................................................................................................................ACAAGGTAAATATCAGGTTG.....................................................................................................................................................................20176.0076000000000000000000000002000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000050150000100400000000000000000051000020000000000000000000001002000000000000000000000020000000000000000000000000112100010000000000000010000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCT................................................................................................................................................................25170.007000000000000000000000000000000000000010010010000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000000000000000100000010000000000000000001000000000000030190000101400000000000000000020000020000000000000000000001000000000000000000000000060000000000000000000001000280000000000000000000010100000000
.....................................................................................................................................AACAAGGTAAATATCAGGTTG.....................................................................................................................................................................21168.00680000000000000000000000023000000000000000000000000001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010011000000000000000000000000000000000000407000090800000000000000100150010010000000000000000000000000000000000000000000000010000000000000000000000000100000001000000000000000000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGTTT.........................................................................................................................23167.006700000000000200000000000200000000000000000010000000000000000000000000000000008105110000000000000400000000000000006000000000000000000000000000000000000000000000000000000000100000000000000003001000000000000000000000000000000091101000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCA................................................................................................................................................................25166.0066000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100700200009000000001000000000000000000000000000000000000000000000000000000000000000000000000000404000010100000000000000000010000000011000061000000000001000000000000000000000000000000010000000000031000000382100000000000000000020100200000
...............................................................................................................................................................................AACATCTGTATATACCTTTGT...........................................................................................................................21158.00580000000000000000000000000000000000000000000011100000000000000000000000000000000100000000000001000000000000000000000000000000000000000000000000000010000200000000000000000002000010000000020120000000000000000000000000100044152014000000000000000000000000000000000000000000141001000000000000000000001020000010000000000000000000000000
............................................................................................................................................TAAATATCAGGTTGTTTC.................................................................................................................................................................18147.004700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010002100000000000000000000000000000000000020011000010400000000000000000020100000000000000000000000000000000000000000000000000020000000000000000000000000010000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTATC...............................................................................................................................................................26147.004700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003314000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................CAAGGTAAATATCAGGTTGTTTC.................................................................................................................................................................23143.0043000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000100901700000000000004100400000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000001010221000000000000000000000000000000000000000000010100000000000000000000000030000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTA.................................................................................................................................................................24134.00340000000000020000000000000000000000000000000000000000000000000000000000000000000002000000000000002000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001030000004000000000000000000100000000000000103000000000001000000000000000000000000020000000000000000000000000110000000000000000000000000000000
................................................................................................................................................................................ACATCTGTATATACCTTTGTTCC........................................................................................................................23134.0034000000000002000000000003000000000000000000000000000000000000000000000000000000000000000000100300200000000300001000000000000100000000000000000000000000000000000000000000000000000000000000101000000000000000000000000030011053011000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
.......................................................................................................................................CAAGGTAAATATCAGGTTGTTT..................................................................................................................................................................22127.0027000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000500100000000000003000000000000000000000000000000000000000000000000000000000000000100000000000101000000200000000000000000000000000013000000000000000000000000000000000000000000030000000000000000000000000030000000000000000000000000200000
...........................................................................................................................................GTAAATATCAGGTTGTTTC.................................................................................................................................................................19124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004020000000000000000000000000200000000000000000000000000000000000000000000000000003120001000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGTTC.........................................................................................................................23118.0018000000000000000000000002000000000000000000000000000000000000000000000000000011100000000000000100000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000100000000000000000000000000000010080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGTTCT........................................................................................................................24114.0014000000000001000000000000000000000000000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001060002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTC..................................................................................................................................................................23112.0012000000000102000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010100000000000000000000000000000
................................................................................................................................................................................ACATCTGTATATACCTTTGTTC.........................................................................................................................22111.0011000000000000000000000001000000000000000000000000000000000000000000000000000000100100000000000200100000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTA..................................................................................................................................................................2319.009000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGTTATC.......................................................................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000063000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................CAAGGTAAATATCAGGTTGTT...................................................................................................................................................................2118.008000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTT.................................................................................................................................................................2518.008000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000020000000000000000000001000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTAAATATCAGGTT......................................................................................................................................................................2018.008000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGTA..........................................................................................................................2218.008000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000020000000000000000000000000000000000000001011010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTG..................................................................................................................................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000010200000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000010000000000000000000000000000000
........................................................................................................................................AAGGTAAATATCAGGTTGTTTC.................................................................................................................................................................2217.007000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000200000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGT.......................................................................................................................................................................1817.007000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111000000000000000000000000000000020000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................AGGTAAATATCAGGTTGTTT..................................................................................................................................................................2016.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000010000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTT......................................................................................................................................................................1916.006000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTG.................................................................................................................................................................2415.005000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTC...................................................................................................................................................................2215.005000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGTTCC........................................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000131000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................AAGGTAAATATCAGGTTGTTT..................................................................................................................................................................2115.005000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTTC....................................................................................................................................................................2115.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGG........................................................................................................................................................................1714.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTCC................................................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGA....................................................................................................................................................................2213.003000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................AAATATCAGGTTGTTTC.................................................................................................................................................................1713.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ACATCTGTATATACCTTTGTTCCATC.....................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTGTTCATC......................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AACATCTGTATATACCTTTG............................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTAAATATCAGGTTGTTTCT................................................................................................................................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................ACATCTGTATATACCTTTGTTTT........................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTAAATATCAGG........................................................................................................................................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................GGTAAATATCAGGTTGTTT..................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTAA................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTAAATATCAGGTTGTTTTT................................................................................................................................................................2512.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
droEre2
TGCAGGAGTTCTCCGAACTTGGGAAGATCTGGAAGAGA-GGA--T-GTG----G-------------G--CATCA---G---------------------------TGCTGC-TTGTTCTTAGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTGTATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCAT--C-TTCTAGT-------------TGGTTAC-ATCCTTGCG------TTAGTG------ATC------AATCAATA-ACGT----TTTGGTCCCACTTGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................................................AACAAGGTACATATCAGGTTG.....................................................................................................................................................................211123.00123603094200
.....................................................................................................................................AACAAGGTACATATCAGGTTGTTT..................................................................................................................................................................24174.0074103050200
.....................................................................................................................................AACAAGGTACATATCAGGTTGTT...................................................................................................................................................................23160.0060201045120
.....................................................................................................................................AACAAGGTACATATCAGGTTGT....................................................................................................................................................................22152.005200105100
......................................................................................................................................ACAAGGTACATATCAGGTTGTT...................................................................................................................................................................22123.002300001940
...................................................................................................................................AAAACAAGGTACATATCAGGTTGTT...................................................................................................................................................................25117.00170000890
......................................................................................................................................ACAAGGTACATATCAGGTTGTTT..................................................................................................................................................................23115.001510001040
...................................................................................................................................AAAACAAGGTACATATCAGGT.......................................................................................................................................................................21110.00100010900
......................................................................................................................................ACAAGGTACATATCAGGTTGT....................................................................................................................................................................2118.0080000620
.....................................................................................................................................AACAAGGTACATATCAGGTTGTTTC.................................................................................................................................................................2517.0070002140
...................................................................................................................................AAAACAAGGTACATATCAGGTTGT....................................................................................................................................................................2417.0070000520
................................................................................................................................................................................ACATCTGTATATACCTTTGTTCT........................................................................................................................2316.0062010210
...................................................................................................................................AAAACAAGGTACATATCAGGTTG.....................................................................................................................................................................2314.0040000310
...................................................................................................................................AAAACAAGGTACATATCAGGTT......................................................................................................................................................................2213.0030000210
......................................................................................................................................ACAAGGTACATATCAGGTTGTTTC.................................................................................................................................................................2412.0021000100
.................................................................................................................................................................................CATCTGTATATACCTTTGTTCCG.......................................................................................................................2312.0020010100
................................................................................................................................................................................ACATCTGTATATACCTTTGTTCC........................................................................................................................2312.0020100010
...............................................................................................................................................................................AACATCTGTATATACCTTTGTT..........................................................................................................................2211.0011000000
......................................................................................................................................ACAAGGTACATATCAGGTTGTTC..................................................................................................................................................................2311.0010000010
.....................................................................................................................................AACAAGGTACATATCAGGTTGTC...................................................................................................................................................................2311.0010000010
................................................................................................................................................................................ACATCTGTATATACCTTTGTTC.........................................................................................................................2211.0010100000
......................................................................................................................................ACAAGGTACATATCAGGTTG.....................................................................................................................................................................2011.0011000000
.....................................................................................................................................AACAAGGTACATATCAGGTTGTTTT.................................................................................................................................................................2511.0010000100
.................................................................................................................................................................................CATCTGTATATACCTTTGTTCC........................................................................................................................2211.0010000100
................................................................................................................................................................................ACATCTGTATATACCTTTG............................................................................................................................1911.0011000000
droYak3
TGCAGGAGTTCTCCGAACTTTGGAAGATCTGGAAGAGA-GGA--A-GTG----G-------------G--TATCA---C---------------------------TACTGCATTGTTCTTGGTCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTGGATGATCGAAACATCTGTATATACCTTTGTTCCGAAT-GGACGAA--AGAGCAT--C-TTCAAGT----------------T-AT-ATCC-------------TATG------ATC------AATCAATG-AAAT----CTTGGTCCCACTTGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
................................................................................................................................................................................ACATCTGTATATACCTTTGTTCT........................................................................................................................23157.00574512000000000
................................................................................................................................................................................ACATCTGTATATACCTTTGTTCC........................................................................................................................23112.001292100000000
.....................................................................................................................................AACAAGGTACATATCAGGTTGTT...................................................................................................................................................................23112.0012010000110000
.....................................................................................................................................AACAAGGTACATATCAGGTTGTTT..................................................................................................................................................................24112.0012001000110000
.....................................................................................................................................AACAAGGTACATATCAGGTTGT....................................................................................................................................................................22111.001110000090010
.....................................................................................................................................AACAAGGTACATATCAGGTTG.....................................................................................................................................................................2113.00311000010000
................................................................................................................................................................................ACATCTGTATATACCTTTGTTC.........................................................................................................................2213.00303000000000
...................................................................................................................................AAAACAAGGTACATATCAGGTTGTT...................................................................................................................................................................2513.00300000030000
...................................................................................................................................AAAACAAGGTACATATCAGGTTGT....................................................................................................................................................................2412.00200000020000
.................................................................................................................................................................................CATCTGTATATACCTTTGTTCCG.......................................................................................................................2312.00220000000000
...................................................................................................................................................................................TCTGTATATACCTTTGTTCT........................................................................................................................2012.00220000000000
......................................................................................................................................ACAAGGTACATATCAGGTTGTTT..................................................................................................................................................................2312.00201000100000
...............................................................................................................................................................................AACATCTGTATATACCTTTGTTCT........................................................................................................................2411.00110000000000
......................................................................................................................................ACAAGGTACATATCAGGTTGT....................................................................................................................................................................2111.00100000010000
.....................................................................................................................................AACAAGGTACATATCAGGTT......................................................................................................................................................................2011.00100001000000
.....................................................................................................................................AACAAGGTACATATCAGGT.......................................................................................................................................................................1911.00100000010000
................................................................................................................................................................................ACATCTGTATATACCTTTGTTA.........................................................................................................................2211.00101000000000
...................................................................................................................................AAAACAAGGTACATATCAGGTTG.....................................................................................................................................................................2311.00100000010000
.....................................................................................................................................AACAAGGTACATATCAGGTTGTTTT.................................................................................................................................................................2511.00100000010000
.....................................................................................................................................AACAAGGTACATATCAGGTTGTTTC.................................................................................................................................................................2511.00100000000010
.....................................................................................................................................AACAAGGTACATATCAGGTTGG....................................................................................................................................................................2211.00110000000000
................................................................................................................................................................................ACATCTGTATATACCTTTGTT..........................................................................................................................2111.00101000000000
droEug1
TGCAGGAGTTCCCCGAACTTTGGAAGATCTGCAAGGGA-GGAGA---GA----A-------------T--ACTGA---G---------------------------TAGTGACTTGTTCTTCTTCTAATCTAGAACAAGGTATATATCAGATTGTTTCCTATATTCGACGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGAGCAC--C--CCTCGA-------------AAGT-AATACTCGAGCA------ATA----------CC------AGTAATAATAATC----CGAGGTCAAACTTGSizeHit CountTotal NormTotal
No Reads
droBia1
TGCAAGAGCTCTCCGAACTTTGGAAGATCTGCGAGAAA-GTGGA----G----AA-----AAG----T--ACTTAGCAC---------------------------TACTGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGCTTGTTTCCTATATTTGAAGGCTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACATA--AGAGCAA--C-TTCTCAA-------------TAGC-TA--TGCATGCTG---CAATGGCG------ATA------AACTGATAAAACC----GACTGTCAAACTTGSizeHit CountTotal NormTotal
No Reads
droTak1
TGCAAGAGCTCTCCGAACTTGGGAAGATCTGCAAGAGA-GGA--G-GAA----A-------------T--AATAA---G---------------------------CACTGACTTGTTCTTAATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATTTTCGACGGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAAAAAGAGCAA--C-TCCTCCT-------------AAGT-TA--TGCATGCT------ATTGCG------CCA------AATTAATATAAAC----CGAGGTCTAACTTGSizeHit CountTotal NormTotal
No Reads
droEle1
TGCAAGAGCTCACCGAACTTTGGAAGATCTGCAAGGGA-AAAGT----G----G-------------G--AAAGA---G---------------------------TACTGAATGGTTCTCCATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATGATCGATGATTGAAACATCTGTATCTACCTCTGTTTCGAAT-GGACAAA--AGGCCAG--C-TCCAACA-------------AAGT-AA-C----TATC------GTTTTG------TCA------AATTATTTAAACC----AGAGGTCATACTTGSizeHit CountTotal NormTotal
No Reads
droRho1
TGCAAGAGTTCCCCGAACTTTGGAAGATCTGCAAGGAA-GGAGA----A----GA---------------AATGA---G---------------------------TACTGACTGGCTCTCGATCTAATCTAAAACAAGGTACATATCAGGTTGTTTCCTATATTCAACCGTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGACCAA--C-TCCACCA-------------TAAT-AA-ATTATT---------GTGTTG------CCA------AATTATTCAAGCC----CAAGGTCATACTTGSizeHit CountTotal NormTotal
No Reads
droFic1
TGCAACAGCTCTCCGAACTTGGGAAGATCTGGAAGAGG-GGAGA----G----AT---------------GATGA---G------------------------T--GCCTCACTCGCTTTTAATCTAATCTAAAACAAGGTATTTATCAGGTTGTTTCCTATATTCGAAGTTTGAAACATCTGTATCTACCTTTGTTTCGAAT-GGACAAA--AGCGCAA--C-GCCACTC-TAATTAAAA---TAAT-CA-GTCCCA---------GTAATG------AGA--ATCCA----TCTCAGCC----CAATGGCGAACTTGSizeHit CountTotal NormTotal
No Reads
droKik1
TGCAGGAGCTCGCCGAACTTGGGCAGATCTGTAAGAGA-GGAAT----G----AG-------------------------------------------------------GGTGGGTCATCAGTGCAGTCTAGAACAAGGTACATATCAGG-TGTTTCCTGCATTCGAAAATCGAAACATCTGTATCTACCTTAGTTTCGAAT-GGACTCA--AAAGCAA--C-TCTAACC-------------C----AC-AAGAGTTTG------A-----GGTGG-AAA------AGGTAATTCAGACAGAGATAAGTCAGACTTGSizeHit CountTotal NormTotal
No Reads
droAna3
TGCAAGAGCCCGCCAAACTTTGGAAGATCTGTAAAAAT-GGT--TTATA----G---------TCATT--AATTA---G---------------------------TTAAAAAGTGTTCTTGATTTAATCTAAAACAAGGTACATATCTGGTTGTTTCCTATATTCAAAGTTTGAAACATCTGTATCTACCTTTGTTTCGATT-AAACTAA--AGAGCTA--C-TAAGAAT-----------------------ACGAGTG------TTC---GCGGGATGAGCATC----------GAAT----CAAAGTCAAACTTGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
......................................................................................................................................ACAAGGTACATATCTGGTTGTT...................................................................................................................................................................22112.0012200352
......................................................................................................................................ACAAGGTACATATCTGGTTGTTTC.................................................................................................................................................................2417.007110023
......................................................................................................................................ACAAGGTACATATCTGGTTGTTT..................................................................................................................................................................2317.007000160
.....................................................................................................................................AACAAGGTACATATCTGGTTGTTT..................................................................................................................................................................2416.006200211
...............................................................................................................................................................................AACATCTGTATCTACCTTTGT...........................................................................................................................2116.006100122
......................................................................................................................................ACAAGGTACATATCTGGTTGT....................................................................................................................................................................2115.005100040
.....................................................................................................................................AACAAGGTACATATCTGGTTGT....................................................................................................................................................................2215.005100040
...............................................................................................................................................................................AACATCTGTATCTACCTTTGTTT.........................................................................................................................2313.003300000
...............................................................................................................................................................................AACATCTGTATCTACCTTTGTT..........................................................................................................................2213.003300000
................................................................................................................................................................................ACATCTGTATCTACCTTTGTTTT........................................................................................................................2313.003300000
...............................................................................................................................................................................AACATCTGTATCTACCTTTG............................................................................................................................2011.001000001
.....................................................................................................................................AACAAGGTACATATCTGGTT......................................................................................................................................................................2011.001100000
.....................................................................................................................................AACAAGGTACATATCTGGTTGTT...................................................................................................................................................................2311.001100000
droBip1
TGCAGAAGCCCACCAAACTTTGGAAGATCTGTAAATAT-TT-----GTA----G---------TC--------TG---G---------------------------TTCAAATATGTTCTTGATTTAATCTAAAACAAGGTACATATCGGG-TGTTTCCTGCATTTTAAGATTGAAACATCTGTATCTACCTTTGTTTCGATT-TAACTAA--AGAGCTA--C-ACAG-AT-----------------------AAAAGTG------TTC---ATCGGA-AAGAATCCA----------TC----AAAAGTCACACTTGSizeHit CountTotal NormTotal
No Reads
dp5
TGCAAGAGTTCGCCAAACTTTGGAAGATCTAAGAAGAG-GAAAA----G----AT----AATG----T--GATTA---A---------------------------TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droPer2
TGCAAGAGTTCGCCAAACTTTGGAAGATCTAAGAAGAG-GAAAA----G----AT----AATG----T--GATTAATAC---------------------------AAGTGG-----------------------------------------------------------------------------------------------------------------------------------------------------------CTG---ATTGGA-AGGGAT---CCCC----GTGCCAAATAGAGCCAAAATTASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droWil2
TGCAGTAATTCACCAAATTTGGGTAAATCTGCAAGCAA-ATTGA----AAAAGAT----AATA----TGAAATCA---T------TAT-TAATCATAGTTAATTGAGTTAATTGAATTCTAATTCTAGTCTAAAACAAGGTACATATCAGGTTGTTTCGTATATTTGAAGCCTGAAACATCTGTATCTACCTTTGTTTCGAATAGGACTAA--AGAGTTT--TCTTTAAGC-------------C----CA-ACACATTTG-TTG--TCTGTG------TCA-----------GT--TGAA----CAAGGTCAAACTTGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
......................................................................................................................................ACAAGGTACATATCAGGTTGTT...................................................................................................................................................................22127.0027311904
.....................................................................................................................................AACAAGGTACATATCAGGTTGT....................................................................................................................................................................22126.0026511811
.....................................................................................................................................AACAAGGTACATATCAGGTTGTT...................................................................................................................................................................23113.001320704
......................................................................................................................................ACAAGGTACATATCAGGTTGTTT..................................................................................................................................................................2318.00841300
.....................................................................................................................................AACAAGGTACATATCAGGTTGTTT..................................................................................................................................................................2416.00601320
................................................................................................................................................................................ACATCTGTATCTACCTTTGTTTT........................................................................................................................2313.00302100
.....................................................................................................................................AACAAGGTACATATCAGGTTG.....................................................................................................................................................................2113.00300210
................................................................................................................................................................................ACATCTGTATCTACCTTTGTTT.........................................................................................................................2213.00301101
......................................................................................................................................ACAAGGTACATATCAGGTTGT....................................................................................................................................................................2112.00200200
......................................................................................................................................ACAAGGTACATATCAGGTTGTTTC.................................................................................................................................................................2412.00200011
.....................................................................................................................................AACAAGGTACATATCAGGTTGC....................................................................................................................................................................2211.00100100
................................................................................................................................................................................ACATCTGTATCTACCTTTGTT..........................................................................................................................2111.00100100
...............................................................................................................................................................................AACATCTGTATCTACCTTTGT...........................................................................................................................2111.00100100
......................................................................................................................................ACAAGGTACATATCAGGTTGTTC..................................................................................................................................................................2311.00100100
......................................................................................................................................ACAAGGTACATATCAGGTTG.....................................................................................................................................................................2011.00100001
.......................................................................................................................................CAAGGTACATATCAGGTTGTT...................................................................................................................................................................2111.00101000
........................................................................................................................................AAGGTACATATCAGGTTGTTT..................................................................................................................................................................2111.00100010
......................................................................................................................................ACAAGGTACATATCAGGTTGTTTCA................................................................................................................................................................2511.00100010
..............AAATTTGGGTAAATCTGC...............................................................................................................................................................................................................................................................................................1820.50100010
droVir3
TGCAGGAGTTCTCCAAACTTGGGCAGATCTGTAAGGTG-AACAA----A----GAA---ATTG----G--AGTTAATGTA-----CGGATGGGCATA------------------AACAACAATCTAATCTGAAACAAGGTACATATCAGAGTGTTTCTTAAATTTGATTATTGAAACCTCTGTATATACCTTTCATTGGATT-AAACTGA--TAAGCACATG-TTTCA-A-------------AA-G-TT--TTCATATT-----------G------AAA--ATACA----------------TTAAGTTTAACTTASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTT..................................................................................................................................................................24175701.00757017075499364399677202374730813421914160521774957481189416820125873819137292563520609172680000000000000000210525213508100001141228800000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTC.................................................................................................................................................................25117368.00173681010028103915934352775310000000013934222611161725041904713237701332000022148200000000000000010101170600000023312100000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCC................................................................................................................................................................26115595.001559510110231329172161331300010003017154015168215791540928294301623100020163900000000000000000000083210000000100000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTC..................................................................................................................................................................24113609.0013609101002010358524215641020001101214001930881706173054917610124000008141100000000000000000100067030100004112100000
.....................................................................................................................................AACAAGGTACATATCAGAGTGT....................................................................................................................................................................2219406.009406405913338426109319809314000100572003915204131148717486521851157352233208740000000000000000010535000924000126142121610000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTT...................................................................................................................................................................2315659.005659001101518410246334100022017013571024315331711741137220873041210111334900000000000000000000617702400043405000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCCC...............................................................................................................................................................2715609.005609006044066018600002000204682030035407571557158706870000369700000000000000000000010600000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCCCC..............................................................................................................................................................2811772.001772004031222004000000002017000020098167313716077000022170000000000000000000002400200000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTT.................................................................................................................................................................251709.0070900102212360390003110100320100157147123319405300007630000000000000000000223400000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTTCC...............................................................................................................................................................271708.0070800000261004300000000002600010011151434518204000004510000000000000000000003000000000000000000
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTC.................................................................................................................................................................241640.0064000204442613126000000000037001002310968117302700001510000000000000000000001500000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTG.....................................................................................................................................................................211623.00623203001009010000000000041001404310386471660290010067000000000000000000001900200056614300000
......................................................................................................................................ACAAGGTACATATCAGAGTGTTT..................................................................................................................................................................231603.00603006012911002100000000004511301201351192910504100001350000000000000000000001700000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTTC................................................................................................................................................................261522.005220000121100900000000000350000122102102237502100000290000000000000000000001700000000000000000
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCC................................................................................................................................................................251472.0047200101310105100000000106000001006646268003800001570000000000000000000001100000000000000000
................................................................................................................................................................................ACCTCTGTATATACCTTTCATT.........................................................................................................................221222.0022210100001000000000000000000017354214500000002000000000000000000000001200013823200010
.....................................................................................................................................AACAAGGTACATATCAGAGT......................................................................................................................................................................201196.001960000071001000000000025002000034276250250000040000000000000000000000300000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTC...................................................................................................................................................................231179.001790000027011180000000000180000000121771901800000220000000000000000000001800000000001000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCT................................................................................................................................................................261176.001760000130601000000000005000000142372030080000011000000000000000000000200000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTCC..................................................................................................................................................................241146.0014600001230001000000000002300000006821801900001250000000000000000000001000000000000000000
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCCC...............................................................................................................................................................261143.0014300000100003000000000015000000014176360260000016000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTACATATCAGAGTGTTC..................................................................................................................................................................231126.0012600000800018000000000025000000010105190120000015000000000000000000000400000000000000000
.......................................................................................................................................CAAGGTACATATCAGAGTGTTT..................................................................................................................................................................221103.00103000000010300000000009000000020233160100000011000000000000000000000700000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCA................................................................................................................................................................261103.001030000120002000000000011000011017131117070100111000000000000000000000400300000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCCCT..............................................................................................................................................................28199.009900000100000000000000200000001817134401000003000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTCT.................................................................................................................................................................25194.0094000009000900000000007000001215103120110000011000000000000000000000400000000000000000
...........................................................................................................................................GTACATATCAGAGTGTTT..................................................................................................................................................................18188.008800102501020000000000160000000620220110000020000000000000000000000000000000000000000
.........................................................................................................................................AGGTACATATCAGAGTGTTTCC................................................................................................................................................................22183.008300000600028100000000017000000001010160000013000000000000000000000000000000000000000
..........................................................................................................................................GGTACATATCAGAGTGTTT..................................................................................................................................................................19169.006900000110004000000000018000000044010100000017000000000000000000000000000000000000000
...............................................................................................................................................................................AACCTCTGTATATACCTTTCATT.........................................................................................................................23164.006410100000000000000100000000013277800000001000000000000000000000100300000001000000
........................................................................................................................................AAGGTACATATCAGAGTGTTT..................................................................................................................................................................21164.006400001304020000000000200001001284909000008000000000000000000000100000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCTCC..............................................................................................................................................................28162.0062000000000000000000000000000087102203000005000000000000000000000700000000000000000
...........................................................................................................................................GTACATATCAGAGTGTTTC.................................................................................................................................................................19160.006000000507027000000000060000000041004000006000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTA.................................................................................................................................................................25152.005200000202020000000000300000107541008001014000000000000000000000200000000000000000
......................................................................................................................................ACAAGGTACATATCAGAGTGTT...................................................................................................................................................................22149.004900200101240000000000400000007341002000006000000000000000000000300000000000000000
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCCCC..............................................................................................................................................................27146.004600000700000000000000600000002271305000004000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCTC...............................................................................................................................................................27145.004500000200010000000000000000008821007000005000000000000000000000200000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTA..................................................................................................................................................................24142.00420020000002000000000030010024414604101014000000000000000000000200000000000000000
...............................................................................................................................................................................AACCTCTGTATATACCTTTCATC.........................................................................................................................23134.003400000000000000000000000000009641200000002000000000000000001000000000000000000000
................................................................................................................................................................................ACCTCTGTATATACCTTTCATTC........................................................................................................................23133.003300000000000000000000000002004931500000000000000000000000000000000000000000000000
............................................................................................................................................TACATATCAGAGTGTTTCC................................................................................................................................................................19133.0033000003000000000000001100000000000010000009000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTCA.................................................................................................................................................................25132.00320000000001000000000030000001922203000007000000000000000000000200000000000000000
.........................................................................................................................................AGGTACATATCAGAGTGTTT..................................................................................................................................................................20132.00320000050102000000000050000000130205000008000000000000000000000000000000000000000
........................................................................................................................................AAGGTACATATCAGAGTGTTTCC................................................................................................................................................................23126.00260000010008000000000010000000211702000002000000000000000000000100000000000000000
...........................................................................................................................................GTACATATCAGAGTGTTC..................................................................................................................................................................18226.0052000004000270000000000200000001000013000005000000000000000000000000000000000000000
................................................................................................................................................................................ACCTCTGTATATACCTTTCATC.........................................................................................................................22126.00260000000000000000000000000000652501000002000000000000000000000000000012200000000
.....................................................................................................................................AACAAGGTACATATCAGAG.......................................................................................................................................................................19124.00240000200000000000000060000000612501000001000000000000000000000000000000000000000
.......................................................................................................................................CAAGGTACATATCAGAGTGTTTC.................................................................................................................................................................23124.00240000000104000000000040000010222303000001000000000000000000000100000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTG.................................................................................................................................................................25123.00230000100001000000000010000020550301000003000000000000000000000100000000000000000
........................................................................................................................................AAGGTACATATCAGAGTGTTTC.................................................................................................................................................................22123.00230000011412000000000000000000612201000002000000000000000000000000000000000000000
...............................................................................................................................................................................AACCTCTGTATATACCTTTCAT..........................................................................................................................22123.00230000000000000000000000001000571500000000000000000000000000000000000001002010000
........................................................................................................................................AAGGTACATATCAGAGTGTTC..................................................................................................................................................................21119.00190000080005000000000040000000000001000001000000000000000000000000000000000000000
.......................................................................................................................................CAAGGTACATATCAGAGTGTTTCC................................................................................................................................................................24119.00190000040001000000000040000000060101000002000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGA........................................................................................................................................................................18119.00190010010000000000000020000010544100000000000000000000000000000000000000000000000
......................................................................................................................................ACAAGGTACATATCAGAGTGT....................................................................................................................................................................21118.00180040000000000000000000000000322600000010000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCCA...............................................................................................................................................................27118.00180000020000000000000000000000613302000001000000000000000000000000000000000000000
................................................................................................................................................................................ACCTCTGTATATACCTTTCAT..........................................................................................................................21117.00170000000000000000000000000000742000000000000000000000000000000000000040000000000
...............................................................................................................................................................................AACCTCTGTATATACCTTTCATTC........................................................................................................................24116.00160000000000000000000000000000255400000000000000000000000000000000000000000000000
.........................................................................................................................................AGGTACATATCAGAGTGTTC..................................................................................................................................................................20214.00280000061007100000000020000000111002000006000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCG................................................................................................................................................................26113.00130000030000000000000010000000222201000000000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGC....................................................................................................................................................................22113.00130000000002000000000020000010120100000004000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTT.....................................................................................................................................................................21113.00130000000000000000000070000000001005000000000000000000000000000000000000000000000
............................................................................................................................................TACATATCAGAGTGTTTC.................................................................................................................................................................18112.00120000010103000000000040000000000000000003000000000000000000000000000000000000000
.........................................................................................................................................AGGTACATATCAGAGTGTTTC.................................................................................................................................................................21112.00120000120003000000000010000000000002000003000000000000000000000000000000000000000
...........................................................................................................................................GTACATATCAGAGTGTTTCC................................................................................................................................................................20112.00120000020004000000000020000000020001000001000000000000000000000000000000000000000
.........................................................................................................................................AGGTACATATCAGAGTGTTTCCC...............................................................................................................................................................23112.00120000010003000000000020000000000101000003000000000000000000000100000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTAA.................................................................................................................................................................25111.00110010000000000000000000010122000000004000000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTCTC................................................................................................................................................................26111.00110000000000000000000010000000120301000001000000000000000000000200000000000000000
.............................................................................................................................................ACATATCAGAGTGTTTCC................................................................................................................................................................18110.00100000030001000000000010000000100101000002000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTG..................................................................................................................................................................24110.00100000021001000000000010000000020101001000000000000000000000000000000000000000000
..........................................................................................................................................GGTACATATCAGAGTGTT...................................................................................................................................................................18110.00100000000001000000000030000000100103000001000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTAA................................................................................................................................................................2619.0090000000000000100000000000010010101002020000000000000000000000000000000000000000
............................................................................................................................................TACATATCAGAGTGTTTCCCC..............................................................................................................................................................2138.67260000060000000000000040000000000008000008000000000000000000000000000000000000000
............................................................................................................................................TACATATCAGAGTGTTTCCC...............................................................................................................................................................2028.50170000020000000000000030000000100003000008000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGG....................................................................................................................................................................2218.0081000010000000000000000000000000001000001000000000000000000000100000000011100000
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCT................................................................................................................................................................2518.0080000000000000000000000000000300302000000000000000000000000000000000000000000000
.........................................................................................................................................AGGTACATATCAGAGTGT....................................................................................................................................................................1817.0070000000000000000000030000000010001000002000000000000000000000000000000000000000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTAAA................................................................................................................................................................2617.0070000000000000000000000000011000000003020000000000000000000000000000000000000000
........................................................................................................................................AAGGTACATATCAGAGTGTT...................................................................................................................................................................2017.0070000000100000000000020000000010002000001000000000000000000000000000000000000000
.......................................................................................................................................CAAGGTACATATCAGAGTGTTC..................................................................................................................................................................2216.0060000010003000000000000000000100000000000000000000000000000000100000000000000000
droMoj3
TGCAGGAGTTCTCCAAACTTGGGCAAATCTGCAAATTG-AAATG----A----GAAATGAAGG----G--AATCG---G-GTTAACTT-TGGCAATTGGAGTGCG-CACTGA------ATCGGTCTAATCTAAAACAAGGTACATATCAGAGTGTTTCCCGTATTCGAGTTTTGAAACCTCTGTATATACCTTTCATTAGATT-CAACCGA--AAGTCCA--T-AAA-TATTGATATATGATGATGAT-T---TTC---------CAATTGTG-----ATGA--AATCA----------------TTGAGTTCAACTTASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTC.................................................................................................................................................................2417545.00754560549517389
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTC.................................................................................................................................................................2513143.0031431061813117
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTT..................................................................................................................................................................2411495.00149590182901439
......................................................................................................................................ACAAGGTACATATCAGAGTGTTT..................................................................................................................................................................231974.00974604190945
.....................................................................................................................................AACAAGGTACATATCAGAGTGT....................................................................................................................................................................221522.0052200170514
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCC................................................................................................................................................................251294.0029410150287
.....................................................................................................................................AACAAGGTACATATCAGAGTGTT...................................................................................................................................................................231236.0023610130231
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCC................................................................................................................................................................261177.0017700000177
......................................................................................................................................ACAAGGTACATATCAGAGTGTT...................................................................................................................................................................221144.0014400030141
......................................................................................................................................ACAAGGTACATATCAGAGTGTTC..................................................................................................................................................................23173.00730010072
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTT.................................................................................................................................................................25159.00590000059
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTC..................................................................................................................................................................24158.00580000058
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCT................................................................................................................................................................25151.00510001050
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCT................................................................................................................................................................26136.00360000036
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCA................................................................................................................................................................25122.00220002020
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTT.................................................................................................................................................................24121.00210010020
.....................................................................................................................................AACAAGGTACATATCAGAGTG.....................................................................................................................................................................21116.00161000015
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCCC...............................................................................................................................................................27115.00150000015
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCA................................................................................................................................................................26114.00140000014
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTTT................................................................................................................................................................26113.00130000013
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCCC...............................................................................................................................................................26112.00120000012
.......................................................................................................................................CAAGGTACATATCAGAGTGTTTC.................................................................................................................................................................23112.00121001010
......................................................................................................................................ACAAGGTACATATCAGAGTGT....................................................................................................................................................................2119.009000009
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTA.................................................................................................................................................................2419.009000009
.......................................................................................................................................CAAGGTACATATCAGAGTGTTT..................................................................................................................................................................2213.003000003
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCCCC..............................................................................................................................................................2713.003000003
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTCT.................................................................................................................................................................2513.003000003
......................................................................................................................................ACAAGGTACATATCAGAGT......................................................................................................................................................................1912.002000002
......................................................................................................................................ACAAGGTACATATCAGAGTG.....................................................................................................................................................................2012.002000002
...........................................................................................................................................GTACATATCAGAGTGTTTC.................................................................................................................................................................1912.002000002
................................................................................................................................................................................ACCTCTGTATATACCTTTCATT.........................................................................................................................2212.002100001
......................................................................................................................................ACAAGGTACATATCAGAGTGTTCT.................................................................................................................................................................2412.002000002
.....................................................................................................................................AACAAGGTACATATCAGAGT......................................................................................................................................................................2012.002000002
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTTT................................................................................................................................................................2512.002000002
.....................................................................................................................................AACAAGGTACATATCAGAGTGTC...................................................................................................................................................................2312.002000002
......................................................................................................................................ACAAGGTACATATCAGAGTGTC...................................................................................................................................................................2212.002000002
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCCCC..............................................................................................................................................................2812.002000002
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCCA...............................................................................................................................................................2611.001000001
.......................................................................................................................................CAAGGTACATATCAGAGTGTTC..................................................................................................................................................................2211.001000001
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTG.................................................................................................................................................................2511.001000001
........................................................................................................................................AAGGTACATATCAGAGTGTTTC.................................................................................................................................................................2211.001000001
......................................................................................................................................ACAAGGTACATATCAGAGTGTTG..................................................................................................................................................................2311.001000001
.....................................................................................................................................AACAAGGTACATATCAGAGTGA....................................................................................................................................................................2211.001000001
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCATT..............................................................................................................................................................2711.001000001
..........................................................................................................................................GGTACATATCAGAGTGTTTC.................................................................................................................................................................2011.001100000
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTG.................................................................................................................................................................2411.001000001
...............................................................................................................................................................................AACCTCTGTATATACCTTTCATT.........................................................................................................................2311.001100000
........................................................................................................................................AAGGTACATATCAGAGTGT....................................................................................................................................................................1911.001000001
........................................................................................................................................AAGGTACATATCAGAGTGTTT..................................................................................................................................................................2111.001000001
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTCCT...............................................................................................................................................................2711.001000001
.......................................................................................................................................CAAGGTACATATCAGAGTGTTTCCC...............................................................................................................................................................2511.001100000
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTTTT...............................................................................................................................................................2711.001000001
...............................................................................................................................................................................AACCTCTGTATATACCTTTCATC.........................................................................................................................2311.001000001
............................................................................................................................................TACATATCAGAGTGTTTCT................................................................................................................................................................1911.001000001
................................................................................................................................................................................ACCTCTGTATATACCTTTCATTC........................................................................................................................2311.001100000
......................................................................................................................................................AGTGTTTCCCGTATTCGAGTTTTGA................................................................................................................................................2511.001000001
...........................................................................................................................................GTACATATCAGAGTGTTC..................................................................................................................................................................1811.001000001
.....................................................................................................................................AACAAGGTACATATCAGAGTGTTTA.................................................................................................................................................................2511.001000001
......................................................................................................................................ACAAGGTACATATCAGAGTGTTTCCTCC.............................................................................................................................................................2811.001000100
droGri2
TGCAGGAGTTCGCCAAATTTTGGCAGATCTGTAATGCAGAACAA----ATAAAAG----ATTA----GAAAGTGA---A------CAG-TGAACATAACAAAGCA---------AAATAACAGTCTAATCCAAAACAAGGTACATATTAGAGCGTTTCCTATCTTTGAGTATTGAAACCTCTGTATATACCTTCAT-TCGATT-CGACTGA--TAATCTC--A-TTAAAAT----------------C-AT--TTCAG---------TTG---ATTAGAAGA--GTGCA----------------TTATGTCAAACTTASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.....................................................................................................................................AACAAGGTACATATTAGAGCGTTTC.................................................................................................................................................................25139.0039138
.....................................................................................................................................AACAAGGTACATATTAGAGCGTTT..................................................................................................................................................................24120.0020713
.....................................................................................................................................AACAAGGTACATATTAGAGCGT....................................................................................................................................................................22119.0019118
.....................................................................................................................................AACAAGGTACATATTAGAGCGTT...................................................................................................................................................................23114.0014311
.....................................................................................................................................AACAAGGTACATATTAGAGCGTTTCT................................................................................................................................................................2617.00707
.....................................................................................................................................AACAAGGTACATATTAGAGCGC....................................................................................................................................................................2211.00101
.....................................................................................................................................AACAAGGTACATATTAGAGCG.....................................................................................................................................................................2111.00110
...............................................................................................................................................................................AACCTCTGTATATACCTTCAT-..........................................................................................................................2111.00110
......................................................................................................................................ACAAGGTACATATTAGAGCGTTTC.................................................................................................................................................................2411.00101
.................................................................................................................................................................................CCTCTGTATATACCTTCAT-T.........................................................................................................................2011.00110
.....................................................................................................................................AACAAGGTACATATTAGAGCGTTTT.................................................................................................................................................................2511.00101
...............................................................................................................................................................................AACCTCTGTATATACCTTCAT-T.........................................................................................................................2211.00110
......................................................................................................................................ACAAGGTACATATTAGAGCGTTTCA................................................................................................................................................................2511.00101
................................................................................................................................................................................ACCTCTGTATATACCTTCAT-T.........................................................................................................................2111.00110

Generated: 10/20/2015 at 11:24 PM