ID:

dsi-mir-955

 Coordinate:

3l:3196034-3196148 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

antisense_to_3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.4 -33.4 -33.2

Flybase annnotation

Antisense to utr3 [utr3_minus_4676]; utr5 [utr5_plus_6624]

No Repeatable elements found

Sense Strand Reads

ATTAAATAATAAAATTGTTTGATGTAGGTGGGGTAAAATAGGTAAAGAACTCTTTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGTGTTTTGCCTAATCGCATTCAATTTCTGCACGGTAGAGATGGTACGCTTAGAAACAACCTAAAGAAATTATTACGTATATATGTATATAAAACTTAAAATATATGGTAATATTAA

***********************************************************..(((..((((.(((.((((((((((((((.((((((..................)))))))))))))))))))).))).))))..)))******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025

embryo

 GSM343915

embryo

 SRR553488

RT_0-2 hours eggs

 SRR553487

NRT_0-2 hours eggs

 M023

head

 O002

Head

 SRR618934

dsim w501 ovaries

 SRR553486

Makindu_3 day-old ovaries

 SRR553485

Chicharo_3 day-old ovaries

 SRR902009

testis

 O001

Testis

 SRR902008

ovaries

 SRR1275487

Male larvae		 SRR1275483

Male prepupae		 SRR1275485

Male prepupae		 M024

male body		 M053

female body
..........................................................................CATCGTGCAGAGGTTTGAGTGTC...................................................................................................................... 23 0 1 882.00 882 436 395 13 5 5 9 3 0 0 5 3 2 1 3 1 0 1
..........................................................................CATCGTGCAGAGGTTTGAGTGT....................................................................................................................... 22 0 1 171.00 171 41 84 11 13 2 1 5 6 2 3 0 1 2 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTGTC...................................................................................................................... 22 0 1 162.00 162 124 29 2 0 1 3 1 0 0 0 0 1 0 0 1 0 0
...................................................................................................................CATTCAATTTCTGCACGGTAGT.............................................................................. 22 1 1 110.00 110 85 4 7 6 5 0 0 0 2 0 0 0 0 0 0 1 0
..........................................................................CATCGTGCAGAGGTTTGAGTG........................................................................................................................ 21 0 1 88.00 88 13 60 1 0 3 2 2 2 1 1 2 0 1 0 0 0 0
........................................................TGGCCAGCTAATCAACTC............................................................................................................................................. 18 0 1 64.00 64 64 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACGG.................................................................................. 18 0 1 51.00 51 50 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACGGTAGA.............................................................................. 22 0 1 49.00 49 14 17 5 9 0 0 0 2 2 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACGGTAG............................................................................... 21 0 1 37.00 37 14 0 15 3 0 1 1 2 1 0 0 0 0 0 0 0 0
.......................................................TTGGCCAGCTAATCAACTC............................................................................................................................................. 19 0 1 33.00 33 32 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTGT....................................................................................................................... 21 0 1 28.00 28 8 4 2 1 2 0 4 4 2 1 0 0 0 0 0 0 0
........................................................TGGCCAGCTAATCAACTCC............................................................................................................................................ 19 0 1 17.00 17 8 8 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTGTCC..................................................................................................................... 23 0 1 14.00 14 5 6 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGTGG....................................................................................................................... 22 1 1 13.00 13 11 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGT......................................................................................................................... 20 0 1 13.00 13 0 3 1 2 0 1 1 1 4 0 0 0 0 0 0 0 0
......................................................TTTGGCCAGCTAATCAACTC............................................................................................................................................. 20 0 1 12.00 12 12 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAG.......................................................................................................................... 19 0 1 11.00 11 6 0 0 0 2 0 0 1 0 0 2 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACGGTAGG.............................................................................. 22 1 1 8.00 8 6 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGA........................................................................................................................... 18 0 1 6.00 6 0 0 0 0 0 4 0 0 0 0 2 0 0 0 0 0 0
..........................................................................CATCGTGCAGCGGTTTGAGTGTC...................................................................................................................... 23 1 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................TTTTGGCCAGCTAATCAACTC............................................................................................................................................. 21 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTGTCCTG................................................................................................................... 25 0 1 6.00 6 4 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTGTCT..................................................................................................................... 23 1 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGGCCAGCTAATCAACTCC............................................................................................................................................ 20 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGGGTC...................................................................................................................... 23 1 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACGGTAGC.............................................................................. 22 1 1 5.00 5 4 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGATGTTTGAGTGTC...................................................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGCGTC...................................................................................................................... 23 1 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGTGTCT..................................................................................................................... 24 1 1 5.00 5 3 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCTTGCAGAGGTTTGAGTGTC...................................................................................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACGGTAGTT............................................................................. 23 2 1 4.00 4 1 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGTGA....................................................................................................................... 22 1 1 4.00 4 0 0 0 0 0 0 0 2 2 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTGTCCT.................................................................................................................... 24 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGTGC....................................................................................................................... 22 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGTGTCC..................................................................................................................... 24 0 1 3.00 3 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGT......................................................................................................................... 19 0 1 3.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGTGAC...................................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCATAGGTTTGAGTGTC...................................................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGGGTC...................................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGGGT....................................................................................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGTGTG...................................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGACGTTTGAGTGTC...................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTTCACGGTAGA.............................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CACTCAATTTCTGCACGGTAGT.............................................................................. 22 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TTTGGCCAGCTAATCAACTCC............................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGGGCAGAGGTTTGAGTGTC...................................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTCAGTGTC...................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTGTT...................................................................................................................... 22 1 1 2.00 2 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................ATCTTGCAGAGGTTTGAGTGTC...................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TCGTGCAGAGGTTTGAGTGTCCT.................................................................................................................... 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTG........................................................................................................................ 20 0 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGTGTGTC...................................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGCGCAGAGGTTTGAGTGTC...................................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGCTTGAGTGTC...................................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TTGCCAGCTAATCAACTCC............................................................................................................................................ 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCCTGCAGAGGTTTGAGTGTC...................................................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCATAGGTTTGAGTGTC...................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGGGCAGAGGTTTGAGGGTC...................................................................................................................... 23 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACGGTGG............................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTGTCA..................................................................................................................... 23 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGCGGTTTGAGTGT....................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGCGTGTC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGAGTC...................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTCCAGAGGTTTGAGTGTC...................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGCTTTGAGTGTC...................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACGGTA................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................AGCGTGCAGAAGTTTGAGTGTCC..................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGGGG....................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGGGTGTC...................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTCGAGTGTC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CCTCGTGCAGAGGTTTGAGTGTC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CACCGTGCAGAGGTTTGAGTGTC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGTGTG........................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCCGAGGTTTGAGTGG....................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCATGCAGAGGTTTGAGTGT....................................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AATCGTGCAGAGGTTTGAGTG........................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTTAGTGTC...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TATCGTGCAGAGGTTTGAGGGTCG..................................................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCATGCAGAGGTTTGAGTGTC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGGGCAGCGGCTTGAGTGTC...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTAGAGTGTC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CGTCGTGCAGAGGTTTGAGTGT....................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTGC....................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGAAGAGGGTTGAGTGTC...................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCCTGCAGAGGTTTGAGTGTC...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGTCT....................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTTAGTGT....................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTAAGTG........................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCACTTTCTGCACGGTAGT.............................................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCCGCGGTTTTAGTGTC...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CAATCAATTTCTGCACGGTAGT.............................................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCCGCACGGTAGT.............................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCGGAGGTTTGAGTGT....................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGCTTGAGGGTC...................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGCGGCTTTAGTGTC...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGTGTT...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCGGAGGTTTGAGTGTC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGATTCACTG........................................................................................................................ 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGT........................................................................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGCGGTTTGCGTGT....................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGCGGTTTGAGTGTCT..................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGTGGCTTGTGTGTCC..................................................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGGGTCT..................................................................................................................... 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGA......................................................................................................................... 20 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGTGG....................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGAGCAGATGTCTGAGTGT....................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCACAGGTTTGAGTGTC...................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGGGGTTTGAGTGTC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCATGCAGAGGTTTGAGTG........................................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GTCGTGCAGAGGTTTGAGTGTC...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGCGGTTTTTGTGTC...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGATTGTGTGTC...................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGATGTTTGAGTGG....................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGC........................................................................................................................... 18 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................ATTCAATTTCTGCACGGTAGA.............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCATGCAGAGGTTTGAGTGTC...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGGTTGAATGTC...................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CAGCGTGCAGAGGATTGAGTGGC...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................TCGTGCAGAGGTTTGAGTGTCC..................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GTGCAGAGGTTTGAGTGTC...................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGTGGGTTGAGTGTC...................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................ATCGTGCAGAGGTTTGAGAGTC...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TTGGCCAGCTAATCGACTCC............................................................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGCGCGTC...................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................GTGCAGAGGTTTGAGT......................................................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGGTTGCGTG........................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGTAGAGGTTTGAGTTTT...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGATGTTTGAGTGT....................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACTGTAGT.............................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGGGCAGAGGTTTGAGTGT....................................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATAGTGCAGCGGTTTGATTGTC...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGATGTTTTAGTGTG...................................................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGGTTGTGTGT....................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AATCGTGCAGAGGGTTGAGTGTC...................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................TGGCCAGCTAATCAACTCCC........................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AATCGTGCAGAGGTTTGCGTG........................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACGGTAGTA............................................................................. 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGAGTA...................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTTGAGTGGC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGGTTGAGTGTC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTGTGAGTGTA...................................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................TATCGTGCAGAGGTTTGAGTGTC...................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................CATTCAATTTCTGCACGGGAGT.............................................................................. 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCAGAGGTTAGTGTC........................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................CATCGTGCGGAGGGTTGAGGGTC...................................................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
................................................ACTCTTTTTGGCCAGCT...................................................................................................................................................... 17 0 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................TCGCGATGGTAGGCTTAGAA.............................................................. 20 3 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................ATAGTGCAGAGGTTTGTGTGTT...................................................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................AATCGGGCAGAGGGTTGAGTG........................................................................................................................ 21 3 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
..................TTGCTGATGGTGGGGTAAAA................................................................................................................................................................................. 20 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................TTGCTGATGGTGGGGTAAA.................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..TAAATAATAAAATTG...................................................................................................................................................................................................... 15 0 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................AGATGGTATGCGTAGA............................................................... 16 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

TAATTTATTATTTTAACAAACTACATCCACCCCATTTTATCCATTTCTTGAGAAAAACCGGTCGATTAGTTGAGGTAGCACGTCTCCAAACTCACAGGACACAAAACGGATTAGCGTAAGTTAAAGACGTGCCATCTCTACCATGCGAATCTTTGTTGGATTTCTTTAATAATGCATATATACATATATTTTGAATTTTATATACCATTATAATT

*******************************************************************..(((..((((.(((.((((((((((((((.((((((..................)))))))))))))))))))).))).))))..)))*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053

female body

 GSM343915

embryo

 SRR553486

Makindu_3 day-old ovaries
...............................................................................................................................CGTGCCATCTCTACCATGCGAATC................................................................ 24 0 1 1.00 1 1 0 0
............................................TTCTTGAGATAAACGGGTC........................................................................................................................................................ 19 2 4 0.25 1 0 1 0
.......................................................................................................................................................TTCGTTGGCTTTCTTTAGTAA........................................... 21 3 15 0.07 1 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 3l:3195984-3196198 + dsi-mir-955 Known_mirbase ATTA--AATA----A-TAAAA---TTGT--------TT----GAT--GTAGGTG--GGGTAAAATAG---GTAAAGAA--CTCT-----TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGAAA---------------TTATTACGTATATATG-------------TATATAAAACTTAAAATA------------------------------------------------------------------------------------------------------------TATGGT-----AATATTAA
droSec2 scaffold_2:3291301-3291510 + ATTA--AATA----A-TAAAA---TTGT--------TT----GAT--GTAGGTG--GGGTAAAATAG---GTAATAAA--CACT-----TTTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCAG---AGAGATGGTA-CGCTTAGAAACAACCTACAAAAA---------------TTGTTACTTATATATG-------------CATATAAAACTTGAAATA------------------------------------------------------------------------------------------------------------T--AGT-----AATTTTAA
dm3 chr3L:3298998-3299206 + dme-mir-955 Known_mirbase ATTA--AATA----A-CAAAA---TTGT--------TT----GAT--GTAGGTG--GGGTAAAATAG---GTAAGGAA--CACT-----TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAACAA---------------TTTTATCTTATAGTTG--------------------AACTTAAAATAAAGTA-----------------------------------------------------------------------------------------------------------A-----CAATATTTA
droEre2 scaffold_4784:5981949-5982141 + der_1541 ATGA--AATA----A-TACAT---TTGT--------GT----GCT--ATAATTGGG---TAAAATAA---GAAGGAAT-AC-AC-----TTTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGCAA---------------GTATTAATTA---------------------------------------------------------------------------------------------------------------------------------------------------TGGTCAAATAATAGTAC
droYak3 3L:3844706-3844886 + dya_46 confident ATTA--AATA----T-TACAG---TTGT--------TT----GCT--ATAGGCGGG---TAAAATAA---GTAAA----------------GTAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAATGA---------------GT----------------------------------ATATAT-AA---------------ACT---------------------------------------------------------------------------------------------ATGGT-----CAAATT--
droEug1 scf7180000409466:1024668-1024912 + AAATTAAATA----C-CTAAA---TTTT--------TT---GGGATTGTAGTTG--GGATA-TTTT----------------------ATTTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGACTTAATCAAACTTTAGTTAAGAACATTA-----ATTTATTT-----------------------------------------------------------------ACCCAAAATTA-----------ACACGGATTTTTAACTATATAGACTTCGATTTGA----------------------AGCCTGA
droBia1 scf7180000302428:2658356-2658578 + ATCA--AAAG----T-TTTAT---ATTT--------TT----GCC--TAAGGTGGG---TAGAATAATAATTACAGGATTTGCTTTT-CGTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACAT---------------TAAAAACATTA-----ACTTATTTTTA---------------------AGTAACTACTTTGT------------------------------------------------------------------------------TTCCC----------------------ATCTTTA
droTak1 scf7180000415378:64747-64976 - ATGA--AATG----T-TGATAT-GATCT--------TT----GCGT-TAAGGTGGG---TAGAATAA---TTACAGGG--TATTTTTTGTTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAAA---------------TTCCTA----------ATTCCT------AA-----AAA---------------------------------------------TTC-------------------CTAA-----------------AAAAA---------ATTGCAATTGCAATGT--AA-----AGTTAATGG
droEle1 scf7180000491249:1960450-1960663 - ATCA--AATC----GTTAAAT---TTGT--------TT----GAC--TTAGGTGGG---TAAAATTATTGTG-GAAGG--TATT-----TGTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAAGATCA---------------AAATTACATAAACAT-------------AA-----AAACTTGA--------------------------------------------------------------CTAA-----------------AATAA---------TTAACAG-----------------------TTGA
droRho1 scf7180000757703:602-827 - AAAA--CAATTTTGT-TAAAG---TTGT--------TT----GAT--TTAGATGGG---TAAAATTA---TTATTTAA--AAAT-----TTCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAACATCTATTCGAAATTTAG---ATTACCTAAATG----------------ACAAAAAATTTAAGGTT------------------------------------------------------------------------------------------------------------TAAG------GAATATTAA
droFic1 scf7180000454105:1620270-1620504 + ATCA--AATT----C-TAAAGT--ATTT--------TT----G-C--TTGAGTGGG---TGAAGCAA--------------CCT-----TTTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATATATACACTA------------------------AATGCTATTTG---------------------AGCAGGAACTGTGATCTCGTTTATCAGGCATCATTTCTACAATGCAT---------------------------------------------------------------AAT-----GAGTTGGA
droKik1 scf7180000302391:414300-414539 + ATCT--AAAA----CCCAAACTAGTTGT--------TT----GCT--TTGTGTAGC---TAAAATTG------AAT-T--CGAC-----ATTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAATTTATATGCTA------------------------AATTTT------AA-----TAT---------------------------------------------TTTATAAAGCAAAATCAATTGAA---GAAGAGATATTTTTAAACATAT---------TTTAGTG-----------------------CAAG
droAna3 scaffold_13337:7606389-7606539 + dan_53 confident ATAA--AATA----T-TAGTG---TT-T--------TTAATTTTCCTGAGGGTG-------------------AAGGA--TGTT-----TTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTTT-AACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395543:273532-273713 + TAAA--AAAG----G-ATG-----CTTT--------TTAATTGTGTTGAAGGTG-------------------AAGGC--TGTT----TTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTATT----TTTTAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAAAG---------------AA----------------------------------AACTAG-AA---------------GAT---------------------------------------------------------------------------------------------CCTGT-----C-TATCCA
dp5 XR_group8:3252997-3253057 - AATT--CAGA----A----------T-T--------TC----CAT--CTGGGTGGT---TGGG------------------------------------------------GTCCTGCAGGGGTTTGAGGGTCCTGT---GTCTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_65:53621-53626 - ATTC--AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004511:10215716-10215852 + dwi_5439 ACAT--AATA-TTAT-TCAAAT--ACTT--------TT----GCGTTAA------------------------------------------------GGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12758:855563-855700 - dvi-mir-955 Known_mirbase AATT--AAAG----A-CAGGT---ATGT------------------------------------------------AT--GGAT-----CTCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACTAA---------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6680:1909573-1909774 - dmo_71 confident AACA--TAAC----A-CAGGT---ATGTATCGATTCTTATTTGACTCGAATCTC-------------------AGGTA--TCCA----ATAT----GGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTTT-GGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACTGA---------------------------------AAGCGAATCAAGG-----GAACTAGG--------------------------------------------------------------CCAA---------T------------------------A-GG----------CGA-----GAATCATAT
droGri2 scaffold_15110:657023-657172 + dgr_27 candidate-rescued AATT--AAAG----A-CAGGT---TTGT--------TT----TTCTTGTAGATG--AAATGGATTTA---AT----------------------AAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATTA--AATA----A-TAAAA---TTGT--------TT----GAT--GTAGGTG--GGGTAAAATAG---GTAAAGAA--CTCT-----TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGAAA---------------TTATTACGTATATATG-------------TATATAAAACTTAAAATA------------------------------------------------------------------------------------------------------------TATGGT-----AATATTAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................231882.008825043613900513339525113
..............................................................................................................CATCGTGCAGAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................221171.00171204100126131158413200
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................221162.0016210124003000212910010
...........................................................................................................................................................CATTCAATTTCTGCACGGTAGT............................................................................................................................................................................................................................221110.00110518500020670400000
..............................................................................................................CATCGTGCAGAGGTTTGAGTG..........................................................................................................................................................................................................................................................................21188.00883013022120126001100
............................................................................................TGGCCAGCTAATCAACTC...............................................................................................................................................................................................................................................................................................18164.0064006400000000000000
...........................................................................................................................................................CATTCAATTTCTGCACGG................................................................................................................................................................................................................................18151.0051005000100000000000
...........................................................................................................................................................CATTCAATTTCTGCACGGTAGA............................................................................................................................................................................................................................22149.00490014000229501700000
...........................................................................................................................................................CATTCAATTTCTGCACGGTAG.............................................................................................................................................................................................................................21137.00370014001123151000000
...........................................................................................TTGGCCAGCTAATCAACTC...............................................................................................................................................................................................................................................................................................19133.0033003200000000100000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................21128.002820800024124401000
............................................................................................TGGCCAGCTAATCAACTCC..............................................................................................................................................................................................................................................................................................19117.001700800100000800000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCC.......................................................................................................................................................................................................................................................................23114.001410501100000600000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGG.........................................................................................................................................................................................................................................................................22113.0013201100000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGT...........................................................................................................................................................................................................................................................................20113.001300000141211300000
..........................................................................................TTTGGCCAGCTAATCAACTC...............................................................................................................................................................................................................................................................................................20112.0012001200000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAG............................................................................................................................................................................................................................................................................19111.001120602001000000000
...........................................................................................................................................................CATTCAATTTCTGCACGGTAGG............................................................................................................................................................................................................................2218.00810600000000100000
..............................................................................................................CATCGTGCAGAGGTTTGA.............................................................................................................................................................................................................................................................................1816.00600002400000000000
.........................................................................................TTTTGGCCAGCTAATCAACTC...............................................................................................................................................................................................................................................................................................2116.00600600000000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCCTG.....................................................................................................................................................................................................................................................................2516.00600400000000200000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................2315.00500400000000100000
...........................................................................................TTGGCCAGCTAATCAACTCC..............................................................................................................................................................................................................................................................................................2015.00500500000000000000
...........................................................................................................................................................CATTCAATTTCTGCACGGTAGC............................................................................................................................................................................................................................2215.00500400000010000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................2415.00500300000000200000
...........................................................................................................................................................CATTCAATTTCTGCACGGTAGTT...........................................................................................................................................................................................................................2314.00400100010110000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGA.........................................................................................................................................................................................................................................................................2214.00400000022000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCCT......................................................................................................................................................................................................................................................................2413.00300200000000100000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGC.........................................................................................................................................................................................................................................................................2213.00300300000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCC.......................................................................................................................................................................................................................................................................2413.00300100100010000000
...............................................................................................................ATCGTGCAGAGGTTTGAGT...........................................................................................................................................................................................................................................................................1913.00300000000003000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTG........................................................................................................................................................................................................................................................................2312.00200000000000200000
..........................................................................................TTTGGCCAGCTAATCAACTCC..............................................................................................................................................................................................................................................................................................2112.00200200000000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTT........................................................................................................................................................................................................................................................................2212.00200000000010001000
................................................................................................................TCGTGCAGAGGTTTGAGTGTCCT......................................................................................................................................................................................................................................................................2312.00200200000000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTG..........................................................................................................................................................................................................................................................................2012.00210000100000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCA.......................................................................................................................................................................................................................................................................2312.00200100000100000000
...........................................................................................................................................................CATTCAATTTCTGCACGGTA..............................................................................................................................................................................................................................2011.00100000000001000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGC.........................................................................................................................................................................................................................................................................2111.00100100000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTT........................................................................................................................................................................................................................................................................2311.00100000000000100000
..............................................................................................................CATCGTGCAGAGGTTTGT.............................................................................................................................................................................................................................................................................1811.00110000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGA...........................................................................................................................................................................................................................................................................2011.00100000001000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGG.........................................................................................................................................................................................................................................................................2111.00100100000000000000
..............................................................................................................CATCGTGCAGAGGTTTGC.............................................................................................................................................................................................................................................................................1811.00110000000000000000
............................................................................................................................................................ATTCAATTTCTGCACGGTAGA............................................................................................................................................................................................................................2111.00100000000000100000
................................................................................................................TCGTGCAGAGGTTTGAGTGTCC.......................................................................................................................................................................................................................................................................2211.00100100000000000000
..................................................................................................................GTGCAGAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................1911.00100000000001000000
..................................................................................................................GTGCAGAGGTTTGAGT...........................................................................................................................................................................................................................................................................1611.00100000000001000000
............................................................................................TGGCCAGCTAATCAACTCCC.............................................................................................................................................................................................................................................................................................2011.00100000000000100000
...........................................................................................................................................................CATTCAATTTCTGCACGGTAGTA...........................................................................................................................................................................................................................2311.00100000000010000000
.............................................................................A--CTCT-----TTTTGGCCAGCT........................................................................................................................................................................................................................................................................................................1730.33100000000001000000
..TA--AATA----A-TAAAA---TTG..................................................................................................................................................................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
ATTA--AATA----A-TAAAA---TTGT--------TT----GAT--GTAGGTG--GGGTAAAATAG---GTAATAAA--CACT-----TTTTGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCAG---AGAGATGGTA-CGCTTAGAAACAACCTACAAAAA---------------TTGTTACTTATATATG-------------CATATAAAACTTGAAATA------------------------------------------------------------------------------------------------------------T--AGT-----AATTTTAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
dm3
ATTA--AATA----A-CAAAA---TTGT--------TT----GAT--GTAGGTG--GGGTAAAATAG---GTAAGGAA--CACT-----TTTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAACAA---------------TTTTATCTTATAGTTG--------------------AACTTAAAATAAAGTA-----------------------------------------------------------------------------------------------------------A-----CAATATTTASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................2311904.0019040000010016000006000000000001000000003003004212203112200000000000000000000000000000042000559630142171092123200000030128060000000000000000000000000103411153441402000000000002004410080013020001006213390011729000001200000003012843380081011002020000027112711000001001002833503500000004100202111011001011143310910504723200299012140217153410157411065116501571104770
..............................................................................................................CATCGTGCAGAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................2211634.001634000001000300000000001014000000000000302200231031110450004300000000000000000000000000000011531052222221188100000011015001020001170100000000000000200003431454021000000000003202002124020800000013590100301352000000400000700137137173031123538002000000015596001000081030001018000020000111001712632633111020001236137118032312271362214060200009200220009200130109396110001020
..............................................................................................................CATCGTGCAGAGGTTTGAGTG..........................................................................................................................................................................................................................................................................211579.00579000000000100000000000002000100000000200110100100200120001100000000000000000000000000000000020010200050000000000000000100010000000000000000001100010112310000000000000020002101020000000000030110001081000000000000000001257614002913110000000051240001000510100140140000000000000001501203021100041442253870027613901911000351110001000102014729104000610
..............................................................................................................CATCGTGCAGAGGTTTGAGT...........................................................................................................................................................................................................................................................................201175.00175000000000000000000000001000000000000000000001000000110000100000000000000000000000000000010001010100000000000000000001000000100000000000000000000101008100000000000000010100000000000000000111000000040000000000000000102064004501000000000055000000000000000000010000000000001601030000000232102520025446061000065000000100000112110000000
...........................................................................................................................................................CATTCAATTTCTGAACGGTAGA............................................................................................................................................................................................................................22185.008500000000000000000000000000000000000000000200100000130000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000100000000000000010000000010000000000011000001000000000000000000035100119010000000000915000000000000000000000000000200000101001000000000001600000002000001000000000000001000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAG............................................................................................................................................................................................................................................................................19162.0062000000000000000000000000000000101000000000000010000100000000000000000000000000000000000000000001000000000000000000000000010001000000000000000000000003000000000000000110010000100020000000000100000000000000000000000181100010000000000000000000000000000000000000000000000200102010000003420021000001003200003000000100000021200000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................24142.0042000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000000000000000000030000101000000000003000000000001000001000000000000000000000000000001000310000001002000000000000200000332361000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................22126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000003002000000000000000000000000000000000000000000000000010000000000010100000000000000003000000000000000000000000000000000000000000000011000610000000000100000000000100000000110000100
...........................................................................................................................................................CATTCAATTTCTGAACGGTAG.............................................................................................................................................................................................................................21121.0021000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000110100020001010000001000000000000000000000000000000021100100000000000000000000000000000000000000000000000011000000000000200000000000000000000000000000000000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................21118.0018000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000100000000000000000100000000000000000000000000100000000000000000001100000001000000000000000000000000000000000000000010400000000000000001000000000000001101000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTT........................................................................................................................................................................................................................................................................23116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000002100000000000000000000000000000000010200000000000010100010000102000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGA.........................................................................................................................................................................................................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000020000000000000000000000000000000000000000000000000000000000000000001000000000000000100000001000000000000110000000010000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTT..........................................................................................................................................................................................................................................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000100000010000000000001000000000000000000000000000000000000000000000000000000000000103000000000000000000010000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTG..........................................................................................................................................................................................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000002000000000000000000000001000000000000000000000000000000000000000010000000000000000002000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTA........................................................................................................................................................................................................................................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005100000000000000000000000000000000000000000000000010000000000001000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCA.......................................................................................................................................................................................................................................................................2416.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000200000000000000000010000000000000000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCC.......................................................................................................................................................................................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGA.............................................................................................................................................................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000
..................................................................................................................GTGCAGAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
............................................................................................TGGCCAGCTAATCAACTCC..............................................................................................................................................................................................................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGG.........................................................................................................................................................................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCC.......................................................................................................................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000
............................................................................................TGGCCAGCTAATCAACTC...............................................................................................................................................................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTATC......................................................................................................................................................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTT........................................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAT............................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................GTGCAGAGGTTTGAGTGTA........................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCCT......................................................................................................................................................................................................................................................................2412.002000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................ATCGTGCAGAGGTTTGAGT...........................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000
..............................................................................................................CATCGTGCAGAGGTTTGAGG...........................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGA...........................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTG........................................................................................................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CATTCAATTTCTGAACGGTAGT............................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...........................................................................................................................................................CATTCAATTTCTGAACGGTAGAA...........................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................TTGGCCAGCTAATCAACTC...............................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CATTCAATTTCTGAACGGT...............................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGAA..........................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTAT.......................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTAA.........................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCCCCC---.................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CATTCAATTTCTGAACGGTAGAATC.........................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATGA--AATA----A-TACAT---TTGT--------GT----GCT--ATAATTGGG---TAAAATAA---GAAGGAAT-AC-AC-----TTTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGCAA---------------GTATTAATTA---------------------------------------------------------------------------------------------------------------------------------------------------TGGTCAAATAATAGTACSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................................................CATCGTGCAGAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................221532.00532401218571852146
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................231411.0041112100122839310
..............................................................................................................CATCGTGCAGAGGTTTGAGTG..........................................................................................................................................................................................................................................................................211293.00293172941731510
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................24139.003913168200
..............................................................................................................CATCGTGCAGAGGTTTGAGT...........................................................................................................................................................................................................................................................................20135.0035401215130
...........................................................................................................................................................CATTCAATTTCTGAACGGTAGA............................................................................................................................................................................................................................22114.00144502300
...............................................................................................................ATCGTGCAGAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................21113.00132100730
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................22110.00101200610
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................2319.0090402030
..............................................................................................................CATCGTGCAGAGGTTTGAG............................................................................................................................................................................................................................................................................1918.0080100520
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTT........................................................................................................................................................................................................................................................................2315.0051001210
..............................................................................................................CATCGTGCAGAGGTTTGAGTGA.........................................................................................................................................................................................................................................................................2214.0040000220
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTG........................................................................................................................................................................................................................................................................2312.0020001010
..............................................................................................................CATCGTGCAGAGGTTTGAGTGC.........................................................................................................................................................................................................................................................................2212.0020200000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCA.......................................................................................................................................................................................................................................................................2412.0020001010
................................................................................................................TCGTGCAGAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................2212.0022000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTT..........................................................................................................................................................................................................................................................................2112.0021000010
...........................................................................................................................................................CATTCAATTTCTGAACGGTAGT............................................................................................................................................................................................................................2211.0010000100
..............................................................................................................CATCGTGCAGAGGTTTGAGTC..........................................................................................................................................................................................................................................................................2111.0011000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCTG......................................................................................................................................................................................................................................................................2511.0010001000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCTAA.....................................................................................................................................................................................................................................................................2611.0010000010
..............................................................................................................CATCGTGCAGAGGTTTGAGTA..........................................................................................................................................................................................................................................................................2111.0010000100
...........................................................................................................................................................CATTCAATTTCTGAACGGTAGAA...........................................................................................................................................................................................................................2311.0011000000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTA........................................................................................................................................................................................................................................................................2311.0011000000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCTT......................................................................................................................................................................................................................................................................2411.0010000010
...............................................................................................................ATCGTGCAGAGGTTTGAGTG..........................................................................................................................................................................................................................................................................2011.0010000010
...............................................................................................................ATCGTGCAGAGGTTTGAGT...........................................................................................................................................................................................................................................................................1911.0010001000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGG.........................................................................................................................................................................................................................................................................2211.0010001000
............................................................................................TGTCCAGCTAATCAACTCC..............................................................................................................................................................................................................................................................................................1911.0010100000
droYak3
ATTA--AATA----T-TACAG---TTGT--------TT----GCT--ATAGGCGGG---TAAAATAA---GTAAA----------------GTAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAATGA---------------GT----------------------------------ATATAT-AA---------------ACT---------------------------------------------------------------------------------------------ATGGT-----CAAATT--SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................................................................................CATCGTGCAGAAGTTTGAGTGTC........................................................................................................................................................................................................................................................................2311520.0015206816121120604150000
..............................................................................................................CATCGTGCAGAAGTTTGAGTGT.........................................................................................................................................................................................................................................................................221151.0015127213416812330000
...........................................................................................................................................................CATTCAATTTCTGAACGGTAGA............................................................................................................................................................................................................................22135.0035033020000000
...............................................................................................................ATCGTGCAGAAGTTTGAGTGTCC.......................................................................................................................................................................................................................................................................23130.0030002910000000
..............................................................................................................CATCGTGCAGAAGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................24129.00291221100130000
...............................................................................................................ATCGTGCAGAAGTTTGAGTGTC........................................................................................................................................................................................................................................................................22122.0022121540000000
..............................................................................................................CATCGTGCAGAAGTTTGAGTGC.........................................................................................................................................................................................................................................................................22118.0018401200020000
..............................................................................................................CATCGTGCAGAAGTTTGAGTGTCC.......................................................................................................................................................................................................................................................................24113.0013101100010000
..............................................................................................................CATCGTGCAGAAGTTTGAGTG..........................................................................................................................................................................................................................................................................2119.00902010150000
...............................................................................................................ATCGTGCAGAAGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................2315.00531100000000
...........................................................................................................................................................CATTCAATTTCTGAACGGTAGT............................................................................................................................................................................................................................2215.00500500000000
............................................................................................................................................................ATTCAATTTCTGAACGGTAGAGT..........................................................................................................................................................................................................................2314.00420200000000
............................................................................................TAAACAGCTAATCAACTCC..............................................................................................................................................................................................................................................................................................1914.00400310000000
..............................................................................................................CATCGTGCAGAAGTTTGAGT...........................................................................................................................................................................................................................................................................2013.00301000020000
..................................................................................................................GTGCAGAAGTTTGAGTGTC........................................................................................................................................................................................................................................................................1913.00300300000000
.............................................................................................................CCATCGTGCAGAAGTTTGAGTGTC........................................................................................................................................................................................................................................................................2413.00300300000000
..............................................................................................................CATCGTGCAGAAGTTTGAGTGTT........................................................................................................................................................................................................................................................................2313.00300100020000
................................................................................................................TCGTGCAGAAGTTTGAGTGTCCTG.....................................................................................................................................................................................................................................................................2412.00200110000000
...........................................................................................GTAAACAGCTAATCAACTC...............................................................................................................................................................................................................................................................................................1912.00200200000000
..............................................................................................................CATCGTGCAGAAGTTTGAGTGG.........................................................................................................................................................................................................................................................................2212.00220000000000
..............................................................................................................CATCGTGCAGAAGTTTGAGTGTG........................................................................................................................................................................................................................................................................2312.00200110000000
...............................................................................................................ATCGTGCAGAAGTTTGAGTGTCCT......................................................................................................................................................................................................................................................................2412.00200200000000
..............................................................................................................CATCGTGCAGAAGTTTGAGTGA.........................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................................................CATCGTGCAGAAGTTTGAGA...........................................................................................................................................................................................................................................................................2011.00100000100000
................................................................................................................TCGTGCAGAAGTTTGAGTGTCCC......................................................................................................................................................................................................................................................................2311.00100100000000
..............................................................................................................CATCGTGCAGAAGTTTGAGC...........................................................................................................................................................................................................................................................................2011.00100100000000
...............................................................................................................ATCGTGCAGAAGTTTGAGTGTCCTG.....................................................................................................................................................................................................................................................................2511.00100010000000
............................................................................................TAAACAGCTAATCAACTC...............................................................................................................................................................................................................................................................................................1811.00100100000000
..............................................................................................................CATCGTGCAGAAGTTTGAGTGTCA.......................................................................................................................................................................................................................................................................2411.00100010000000
...............................................................................................................................................................CAATTTCTGAACGGTAGT............................................................................................................................................................................................................................1811.00100100000000
...........................................................................................................................................................CATTCAATTTCTGAACGGTAGC............................................................................................................................................................................................................................2211.00100100000000
.............................................................................................................................................................TTCAATTTCTGAACGGTAGAGT..........................................................................................................................................................................................................................2211.00100100000000
................................................................................................................TCGTGCAGAAGTTTGAGTGT.........................................................................................................................................................................................................................................................................2011.00100100000000
..............................................................................................................CATCGTGCAGAAGTTTGAGTT..........................................................................................................................................................................................................................................................................2111.00100000010000
..............................................................................................................CATCGTGCAGAAGTTTGAG............................................................................................................................................................................................................................................................................1911.00100100000000
............................................................................................................................................................ATTCAATTTCTGAACGGTAGA............................................................................................................................................................................................................................2111.00100100000000
.............................................................................................................CCATCGTGCAGAAGTTTGAGTGT.........................................................................................................................................................................................................................................................................2311.00100010000000
droEug1
AAATTAAATA----C-CTAAA---TTTT--------TT---GGGATTGTAGTTG--GGATA-TTTT----------------------ATTTTTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGACTTAATCAAACTTTAGTTAAGAACATTA-----ATTTATTT-----------------------------------------------------------------ACCCAAAATTA-----------ACACGGATTTTTAACTATATAGACTTCGATTTGA----------------------AGCCTGASizeHit CountTotal NormTotal
No Reads
droBia1
ATCA--AAAG----T-TTTAT---ATTT--------TT----GCC--TAAGGTGGG---TAGAATAATAATTACAGGATTTGCTTTT-CGTTTGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACAT---------------TAAAAACATTA-----ACTTATTTTTA---------------------AGTAACTACTTTGT------------------------------------------------------------------------------TTCCC----------------------ATCTTTASizeHit CountTotal NormTotal
No Reads
droTak1
ATGA--AATG----T-TGATAT-GATCT--------TT----GCGT-TAAGGTGGG---TAGAATAA---TTACAGGG--TATTTTTTGTTTCGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAAA---------------TTCCTA----------ATTCCT------AA-----AAA---------------------------------------------TTC-------------------CTAA-----------------AAAAA---------ATTGCAATTGCAATGT--AA-----AGTTAATGGSizeHit CountTotal NormTotal
No Reads
droEle1
ATCA--AATC----GTTAAAT---TTGT--------TT----GAC--TTAGGTGGG---TAAAATTATTGTG-GAAGG--TATT-----TGTCGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAAGATCA---------------AAATTACATAAACAT-------------AA-----AAACTTGA--------------------------------------------------------------CTAA-----------------AATAA---------TTAACAG-----------------------TTGASizeHit CountTotal NormTotal
No Reads
droRho1
AAAA--CAATTTTGT-TAAAG---TTGT--------TT----GAT--TTAGATGGG---TAAAATTA---TTATTTAA--AAAT-----TTCTGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAACATCTATTCGAAATTTAG---ATTACCTAAATG----------------ACAAAAAATTTAAGGTT------------------------------------------------------------------------------------------------------------TAAG------GAATATTAASizeHit CountTotal NormTotal
No Reads
droFic1
ATCA--AATT----C-TAAAGT--ATTT--------TT----G-C--TTGAGTGGG---TGAAGCAA--------------CCT-----TTTCAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATATATACACTA------------------------AATGCTATTTG---------------------AGCAGGAACTGTGATCTCGTTTATCAGGCATCATTTCTACAATGCAT---------------------------------------------------------------AAT-----GAGTTGGASizeHit CountTotal NormTotal
No Reads
droKik1
ATCT--AAAA----CCCAAACTAGTTGT--------TT----GCT--TTGTGTAGC---TAAAATTG------AAT-T--CGAC-----ATTTGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAATTTATATGCTA------------------------AATTTT------AA-----TAT---------------------------------------------TTTATAAAGCAAAATCAATTGAA---GAAGAGATATTTTTAAACATAT---------TTTAGTG-----------------------CAAGSizeHit CountTotal NormTotal
No Reads
droAna3
ATAA--AATA----T-TAGTG---TT-T--------TTAATTTTCCTGAGGGTG-------------------AAGGA--TGTT-----TTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTTT-AACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................231158.0015813851382118
..............................................................................................................CATCGTGCAGAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................221149.0014912133196240
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................24157.0057416621613
..............................................................................................................CATCGTGCAGAGGTTTGAGTG..........................................................................................................................................................................................................................................................................21148.004843222116
...........................................................................................................................................................CATTCAACCTTTGGACGGTAGA............................................................................................................................................................................................................................22133.00337191141
..............................................................................................................CATCGTGCAGAGGTTTGAGT...........................................................................................................................................................................................................................................................................20112.0012210351
................................................................................................................TCGTGCAGAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................2218.008700001
.............................................................................................................................................................TTCAACCTTTGGACGGTAGAG...........................................................................................................................................................................................................................2118.008310040
..............................................................................................................CATCGTGCAGAGGTTTGAGTGC.........................................................................................................................................................................................................................................................................2217.007060100
...........................................................................................................................................................CATTCAACCTTTGGACGGTAG.............................................................................................................................................................................................................................2116.006410100
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTT........................................................................................................................................................................................................................................................................2316.006000132
.............................................................................................................................................................TTCAACCTTTGGACGGTAGAGT..........................................................................................................................................................................................................................2215.005120110
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCC.......................................................................................................................................................................................................................................................................2413.003030000
.............................................................................................................CCATCGTGCAGAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................2313.003100011
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................2313.003000003
.............................................................................................................................................................TTCAACCTTTGGACGGTAGAGA..........................................................................................................................................................................................................................2212.002010001
...............................................................................................................ATCGTGCAGAGGTTTGAGTG..........................................................................................................................................................................................................................................................................2012.002100010
............................................................................................................................................................ATTCAACCTTTGGACGGTAGA............................................................................................................................................................................................................................2112.002110000
..............................................................................................................CATCGTGCAGAGGTTTGAGTT..........................................................................................................................................................................................................................................................................2112.002001010
................................................................................................................TCGTGCAGAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................2111.001001000
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................2211.001100000
.............................................................................................................................................................TTCAACCTTTGGACGGTAGA............................................................................................................................................................................................................................2011.001000100
..............................................................................................................CATCGTGCAGAGGTTTGAG............................................................................................................................................................................................................................................................................1911.001000010
..............................................................................................................................................................TCAACCTTTGGACGGTAGAG...........................................................................................................................................................................................................................2011.001100000
.........................................................................................................................................................CGCATTCAACCTTTGGACGGTAGTT...........................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................ATTCAACCTTTGGACGGTAGAGT..........................................................................................................................................................................................................................2311.001010000
.........................................................................................................................................................CGCATTCAACCTTTGGACGGTAG.............................................................................................................................................................................................................................2311.001001000
.............................................................................................................CCATCGTGCAGAGGTTTGAGT...........................................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................CATCGTGCAGAGGTTTGAGTA..........................................................................................................................................................................................................................................................................2111.001000010
...........................................................................................................................................................CATTCAACCTTTGGACGGTAGT............................................................................................................................................................................................................................2211.001010000
...................................................................................T-----TTTTGAGAAGCTCATCAGCTC...............................................................................................................................................................................................................................................................................................2211.001010000
..............................................................................................................CATCGTGCAGAGGTTTGAT............................................................................................................................................................................................................................................................................1911.001000001
...............................................................................................................ATCGTGCAGAGGTTTGAGTGTCA.......................................................................................................................................................................................................................................................................2311.001000010
............................................................................................................................................................ATTCAACCTTTGGACGGTAGAG...........................................................................................................................................................................................................................2211.001100000
..............................................................................................................CATCGTGCAGAGGTTTGAGTGG.........................................................................................................................................................................................................................................................................2211.001000010
..............................................................................................................CATCGTGCAGAGGTTTGAGTGTCTA......................................................................................................................................................................................................................................................................2511.001001000
.............................................................................................................................................................TTCAACCTTTGGACGGTAGTTT..........................................................................................................................................................................................................................2211.001100000
...........................................................................................................................................................CATTCAACCTTTGGACGGTTTT............................................................................................................................................................................................................................2230.331100000
droBip1
TAAA--AAAG----G-ATG-----CTTT--------TTAATTGTGTTGAAGGTG-------------------AAGGC--TGTT----TTTTTGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTATT----TTTTAACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAAAG---------------AA----------------------------------AACTAG-AA---------------GAT---------------------------------------------------------------------------------------------CCTGT-----C-TATCCASizeHit CountTotal NormTotal
No Reads
dp5
AATT--CAGA----A----------T-T--------TC----CAT--CTGGGTGGT---TGGG------------------------------------------------GTCCTGCAGGGGTTTGAGGGTCCTGT---GTCTTG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droPer2
ATTC--AA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droWil2
ACAT--AATA-TTAT-TCAAAT--ACTT--------TT----GCGTTAA------------------------------------------------GGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAAAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..............................................................................................................CATCGTGCTTAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................231674.0067471265311
..............................................................................................................CATCGTGCTTAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................221119.0011932326814
..............................................................................................................CATCGTGCTTAGGTTTGAGTG..........................................................................................................................................................................................................................................................................21142.00421011282
..............................................................................................................CATCGTGCTTAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................24130.00301510104
...........................................................................................................................................................CATTCAACCTTGGAGCGATAGA............................................................................................................................................................................................................................2219.00900090
...............................................................................................................ATCGTGCTTAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................2215.00500050
..............................................................................................................CATCGTGCTTAGGTTTGAGTGTCC.......................................................................................................................................................................................................................................................................2414.00420020
..............................................................................................................CATCGTGCTTAGGTTTGAGTGTCA.......................................................................................................................................................................................................................................................................2413.00300021
..............................................................................................................CATCGTGCTTAGGTTTGAGTGC.........................................................................................................................................................................................................................................................................2213.00330000
...............................................................................................................ATCGTGCTTAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................2112.00200011
..................................................................................................................GTGCTTAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................1912.00200020
..............................................................................................................CATCGTGCTTAGGTTTGAGT...........................................................................................................................................................................................................................................................................2012.00200020
..............................................................................................................CATCGTGCTTAGGTTTGAGTGG.........................................................................................................................................................................................................................................................................2212.00220000
...............................................................................................................ATCGTGCTTAGGTTTGAGTGTCT.......................................................................................................................................................................................................................................................................2312.00200011
..............................................................................................................CATCGTGCTTAGGTTTGAGTGTCAA......................................................................................................................................................................................................................................................................2512.00200020
..................................................................................................................GTGCTTAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................1811.00100001
...........................................................................................................................................................CATTCAACCTTGGAGCGATAG.............................................................................................................................................................................................................................2111.00100010
..............................................................................................................CATCGTGCTTAGGTTTGAGTGTT........................................................................................................................................................................................................................................................................2311.00100010
........................................................................................................................................................TGGCATTCAACCTTGGAGCGATA..............................................................................................................................................................................................................................2311.00100010
..............................................................................................................CATCGTGCTTAGGTTTGAG............................................................................................................................................................................................................................................................................1911.00100100
......................................................................................................................................................A-TGGCATTCAACCTTGGAGCGATAGAA...........................................................................................................................................................................................................................2711.00100010
..............................................................................................................CATCGTGCTTAGGTTTGAGTGTA........................................................................................................................................................................................................................................................................2311.00101000
.............................................................................................................CCATCGTGCTTAGGTTTGAGTG..........................................................................................................................................................................................................................................................................2211.00100010
............................................................................................................................................................ATTCAACCTTGGAGCGATAGA............................................................................................................................................................................................................................2111.00101000
.............................................................................................................CCATCGTGCTTAGGTTTGAGTGTC........................................................................................................................................................................................................................................................................2411.00100010
..............................................................................................................CATCGTGCTTAGGTTTGAGTGTCG.......................................................................................................................................................................................................................................................................2411.00110000
droVir3
AATT--AAAG----A-CAGGT---ATGT------------------------------------------------AT--GGAT-----CTCTCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACTAA---------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..............................................................................................................CATCGTGCACAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................221108.001080013232011000041322141102101215158020000330000000000000000001135500000000000000000
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-.......................................................................................................................................................................................................................................................................23190.00901011310100000001003200020000020110000010000000000000000000013440100000000100000001
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-T......................................................................................................................................................................................................................................................................24117.00170011000000000021032102200000100000000000000000000000000000000100000000000000000
...........................................................................................................................................................CATTCAACCTTTGAACGGTAGA............................................................................................................................................................................................................................22117.00170016000000000000010001000000000100000000000000000000000000411000000000001000000
..............................................................................................................CATCGTGCACAGGTTTGAGTG..........................................................................................................................................................................................................................................................................2117.0070000000000000010000200000000000100000001000000000000000000000100000000010000000
..............................................................................................................CATCGTGCACAGGTTTGAGT...........................................................................................................................................................................................................................................................................2015.0050000000000000010000001100000100100000000000000000000000000000000000000000000000
...........................................................................................................................................................CATTCAACCTTTGAACGG................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000100000000000000300000000000000000000
..............................................................................................................CATCGTGCACAGGTTTGAG............................................................................................................................................................................................................................................................................1914.0040000000001000000000000000001010100000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-C......................................................................................................................................................................................................................................................................2412.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CCATCGTGCACAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................2312.0020000000000000002000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCACAGGTTTGAGTGTC-.......................................................................................................................................................................................................................................................................2312.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................TTCAACCTTTGAACGGTAGAG...........................................................................................................................................................................................................................2111.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..................................................................................................................GTGCACAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................1811.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-CT.....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-AT.....................................................................................................................................................................................................................................................................2511.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-A......................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-AA.....................................................................................................................................................................................................................................................................2511.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-TT.....................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
..........................................................................................TCTCATCAGTTAGCTAGCTC...............................................................................................................................................................................................................................................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCACAGGTTTGA.............................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
............................................................................................................................................................ATTCAACCTTTGAACGGTAGA............................................................................................................................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGA............................................................................................................................................................................................................................3911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
...........................................................................................................................................................CATTCAACCTTTGAACGGTAG.............................................................................................................................................................................................................................2111.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CATCGTGCACAGGTTTGAGTGA.........................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................TTCAACCTTTGAACGGTAGA............................................................................................................................................................................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.............................................................................................................................................................TTCAACCTTTGAACGGTAGAGA..........................................................................................................................................................................................................................2211.0010000100000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
AACA--TAAC----A-CAGGT---ATGTATCGATTCTTATTTGACTCGAATCTC-------------------AGGTA--TCCA----ATAT----GGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTTT-GGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACTGA---------------------------------AAGCGAATCAAGG-----GAACTAGG--------------------------------------------------------------CCAA---------T------------------------A-GG----------CGA-----GAATCATATSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-.......................................................................................................................................................................................................................................................................231467.0046781760225922
...........................................................................................................................................................CATTCAGCCTTTGAACGGTAGA............................................................................................................................................................................................................................221128.00128414001064
..............................................................................................................CATCGTGCACAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................22187.008712115121037
..............................................................................................................CATCGTGCACAGGTTTGAGTGTC-.......................................................................................................................................................................................................................................................................23142.00420000420
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-T......................................................................................................................................................................................................................................................................24113.0013121306
...................................................................................A----ATAT----GGGTTAGCGAGCTC...............................................................................................................................................................................................................................................................................................1918.008010070
..............................................................................................................CATCGTGCACAGGTTTGAGTGC.........................................................................................................................................................................................................................................................................2217.007000070
..............................................................................................................CATCGTGCACAGGTTTGAGTG..........................................................................................................................................................................................................................................................................2115.005310010
..............................................................................................................CATCGTGCACAGGTTTGAGT...........................................................................................................................................................................................................................................................................2013.003110001
..............................................................................................................CATCGTGCACAGGTTTGAGTGAC-.......................................................................................................................................................................................................................................................................2313.003000030
...........................................................................................................................................................CATTCAGCCTTTGAACGGTAG.............................................................................................................................................................................................................................2112.002100010
..................................................................................CA----ATAT----GGGTTAGCGAGCTC...............................................................................................................................................................................................................................................................................................2012.002010010
.............................................................................................................CCATCGTGCACAGGTTTGAGTGTT-.......................................................................................................................................................................................................................................................................2411.001000010
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---G................................................................................................................................................................................................................................................................2711.001010000
..............................................................................................................CATCGTGCACAGGTTTGAG............................................................................................................................................................................................................................................................................1911.001000001
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-TC.....................................................................................................................................................................................................................................................................2511.001100000
............................................................................................................................................................ATTCAGCCTTTGAACGGTAGA............................................................................................................................................................................................................................2111.001000010
..............................................................................................................CATCGTGCACAGGTTTGAGTGTA-.......................................................................................................................................................................................................................................................................2311.001000010
...............................................................................................................ATCGTGCACAGGTTTGAGTGT.........................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---T................................................................................................................................................................................................................................................................2711.001010000
........................................................................................ATAT----GGGTTAGCGAGCTC...............................................................................................................................................................................................................................................................................................1811.001000010
...........................................................................................................................................................CATTCAGCCTTTGAACGGTAGAA...........................................................................................................................................................................................................................2311.001000010
............................................................................................................................................................ATTCAGCCTTTGAACGGTAGG............................................................................................................................................................................................................................2111.001000010
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-TT.....................................................................................................................................................................................................................................................................2511.001100000
..............................................................................................................CATCGTGCACAGGTTTGAGTGTT-C......................................................................................................................................................................................................................................................................2411.001010000
............................................................................................................................................................ATTCAGCCTTTGAACGGTAGAA...........................................................................................................................................................................................................................2211.001000010
.................................................................................CCA----ATAT----GGGTTAGCGAGCTC...............................................................................................................................................................................................................................................................................................2111.001000010
...............................................................................................................ATCGTGCACAGGTTTGAGTGTT-.......................................................................................................................................................................................................................................................................2211.001000010
................................................................................TCCA----ATAT----GGGTTAGCGAGCTC...............................................................................................................................................................................................................................................................................................2211.001000010
.............................................................................................................CCATCGTGCACAGGTTTGAGTGTC-.......................................................................................................................................................................................................................................................................2411.001000010
..................................................................................................................GTGCACAGGTTTGAGTGTT-.......................................................................................................................................................................................................................................................................1911.001010000
droGri2
AATT--AAAG----A-CAGGT---TTGT--------TT----TTCTTGTAGATG--AAATGGATTTA---AT----------------------AAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..............................................................................................................CATCGTGCACGGGTTTGAGTGT.........................................................................................................................................................................................................................................................................22161.00612041
..............................................................................................................CATCGTGCACGGGTTTGAGTG..........................................................................................................................................................................................................................................................................21155.00551144
..............................................................................................................CATCGTGCACGGGTTTGAGT...........................................................................................................................................................................................................................................................................20120.0020416
..............................................................................................................CATCGTGCACGGGTTTGAGTGTC-.......................................................................................................................................................................................................................................................................2316.00615
...............................................................................................................ATCGTGCACGGGTTTGAGTG..........................................................................................................................................................................................................................................................................2013.00321
..............................................................................................................CATCGTGCACGGGTTTGAGTGA.........................................................................................................................................................................................................................................................................2212.00202
...............................................................................................................ATCGTGCACGGGTTTGAGTGT.........................................................................................................................................................................................................................................................................2112.00220
..............................................................................................................CATCGTGCACGGGTTTGAGTGTC-T......................................................................................................................................................................................................................................................................2412.00211
..............................................................................................................CATCGTGCACGGGTTTGAGTGTT-.......................................................................................................................................................................................................................................................................2311.00110
...........................................................................................................................................................CATTCAGCCCCTGGACGCTAGA............................................................................................................................................................................................................................2211.00110
..............................................................................................................CATCGTGCACGGGTTTGAGTGTC-A......................................................................................................................................................................................................................................................................2411.00101
...............................................................................................................ATCGTGCACGGGTTTGAGTGTC-.......................................................................................................................................................................................................................................................................2211.00101
.................................................................................................................CGTGCACGGGTTTGAGTGT.........................................................................................................................................................................................................................................................................1911.00110
.............................................................................................................CCATCGTGCACGGGTTTGAGT...........................................................................................................................................................................................................................................................................2111.00110

Generated: 10/20/2015 at 11:27 PM