ID:

dsi-mir-2582a

 Coordinate:

x:3954250-3954365 -

 Confidence:

Known

 Type:

Unknown

 [View on miRBase]
[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.4 -25.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+

Sense Strand Reads

GGTTTTAGAGCTGCAAGAAAAATTGTGAAATTTTTTATAAATATTACAAATATTATTCATGATTACCATTCATATCCTTCACAGTGTTCCTAATAGATAGTTATTATTACACTATCTTTAGCAACACTTTTGAGATAAGGATGGGATAACGCTGCAAGAATTATAAACATTTCCAATCCATCAATCTAAGCTTGATTTCACAGCTGAAAAGAGTGA
**************************************************************...((((((.((((..(((.((((((.((((.(((((((((....)).))))))))))).))))))..))))))).)))))).....******************************************************************* 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 M024
male body		 GSM343915
embryo
 M025
embryo
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 SRR1275485
Male prepupae		 SRR902008
ovaries
.............................................................................TTCACAGTGTTCCTAATAGATAG.................................................................................................................... 23 0 1 1531.00 1531 1150 80 156 65 49 8 21 0 0 0 0 1 1 0
.............................................................................TTCACAGTGTTCCTAATAGATAGT................................................................................................................... 24 0 1 1184.00 1184 308 510 162 65 45 78 4 1 2 3 1 3 1 1
.............................................................................TTCACAGTGTTCCTAATAGATA..................................................................................................................... 22 0 1 319.00 319 262 0 50 3 2 0 2 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGA....................................................................................................................... 20 0 1 162.00 162 141 7 1 0 0 0 0 9 3 1 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGAT...................................................................................................................... 21 0 1 141.00 141 103 7 22 1 4 0 3 1 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATA......................................................................................................................... 18 0 1 139.00 139 134 2 1 0 0 0 2 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAG........................................................................................................................ 19 0 1 109.00 109 105 3 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................GTTCCTAATAGATAGT................................................................................................................... 16 0 1 53.00 53 0 53 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTA.................................................................................................................. 25 1 1 52.00 52 0 3 45 2 2 0 0 0 0 0 0 0 0 0
..............................................................................TCACAGTGTTCCTAATAGATAGT................................................................................................................... 23 0 1 40.00 40 30 7 0 1 0 0 1 0 1 0 0 0 0 0
..............................................................................TCACAGTGTTCCTAATAGATAG.................................................................................................................... 22 0 1 31.00 31 27 0 1 2 0 0 1 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTAA................................................................................................................. 26 1 1 31.00 31 0 4 17 0 7 0 0 0 1 1 1 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAA.................................................................................................................... 23 1 1 30.00 30 0 0 29 1 0 0 0 0 0 0 0 0 0 0
...................................................................................GTGTTCCTAATAGATAGT................................................................................................................... 18 0 1 29.00 29 0 29 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGA................................................................................................................... 24 1 1 19.00 19 0 3 14 0 2 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTT.................................................................................................................. 25 0 1 14.00 14 6 2 6 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TATCTTTAGCAACACTTTTGAG.................................................................................. 22 0 1 13.00 13 2 1 8 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTAAA................................................................................................................ 27 2 1 10.00 10 0 7 1 0 1 0 0 0 0 1 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAAA................................................................................................................... 24 2 1 10.00 10 0 0 10 0 0 0 0 0 0 0 0 0 0 0
......................................................................................TTCCTAATAGATAGT................................................................................................................... 15 0 1 9.00 9 0 9 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGG................................................................................................................... 24 1 1 8.00 8 0 0 0 4 1 3 0 0 0 0 0 0 0 0
................................................................................ACAGTGTTCCTAATAGATAGT................................................................................................................... 21 0 1 8.00 8 0 8 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TCACAGTGTTCCTAATAG........................................................................................................................ 18 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TCACAGTGTTCCTAATAGA....................................................................................................................... 19 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CACAGTGTTCCTAATAGATAGT................................................................................................................... 22 0 1 6.00 6 3 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TACACAGTGTTCCTAATAGATAGT................................................................................................................... 24 1 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTAT................................................................................................................. 26 2 1 6.00 6 0 0 6 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TATCTTTAGCAACACTTTTGA................................................................................... 21 0 1 6.00 6 1 0 1 0 1 0 0 0 0 0 3 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTTA................................................................................................................. 26 0 1 5.00 5 0 0 5 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAAT.......................................................................................................................... 17 0 1 4.00 4 0 3 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGAA.................................................................................................................. 25 2 1 4.00 4 0 0 4 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTCTTCCTAATAGATAGT................................................................................................................... 24 1 1 4.00 4 0 0 0 0 0 4 0 0 0 0 0 0 0 0
....................................................................................TGTTCCTAATAGATAGT................................................................................................................... 17 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTTTTCCTAATAGATAGT................................................................................................................... 24 1 1 3.00 3 0 2 0 0 0 1 0 0 0 0 0 0 0 0
.................................................................................CAGTGTTCCTAATAGATAGT................................................................................................................... 20 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................CTTCACAGTGTTCCTAATAGATAG.................................................................................................................... 24 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATTCACAGTGTTCCTAATAGATAGT................................................................................................................... 25 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGC................................................................................................................... 24 1 1 3.00 3 0 1 0 1 0 1 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAAT................................................................................................................... 24 1 1 3.00 3 0 1 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TCACAGTGTTCCTAATAGATAGTA.................................................................................................................. 24 1 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TGCACAGTGTTCCTAATAGATAGT................................................................................................................... 24 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TCCACAGTGTTCCTAATAGATAGT................................................................................................................... 24 1 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTA............................................................................................................................ 15 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAAAA.................................................................................................................. 25 3 1 3.00 3 0 0 3 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AGTGTTCCTAATAGATAGT................................................................................................................... 19 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATGG.................................................................................................................... 23 1 1 3.00 3 0 1 0 0 1 1 0 0 0 0 0 0 0 0
.........................................................................ATAGTTCACAGTGTTCCTAATAGA....................................................................................................................... 24 2 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGAA...................................................................................................................... 21 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..............................................................................TCACAGTGTTCCTAATAGAT...................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CAGTGTTCCTAATAGATAG.................................................................................................................... 19 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GTGTTCCTAATAGATAG.................................................................................................................... 17 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAA........................................................................................................................... 16 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................ACAGTGTTCCTAATAGATAG.................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAT.................................................................................................................... 23 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGCGTTCCTAATAGATAGT................................................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTTT................................................................................................................. 26 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGAGAG.................................................................................................................... 23 1 1 2.00 2 0 0 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TCACAGTGTTCCTAATAGATA..................................................................................................................... 21 0 1 2.00 2 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTCCCTAATAGATAGT................................................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATTCACAGTGTTCCTAATAGATAG.................................................................................................................... 24 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................TTTTAGCAACACTTTTGAG.................................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTAGCAGGGTTCCTAATAGATAGT................................................................................................................... 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCATAGTGTTCCTAATAGATAGTA.................................................................................................................. 25 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCAGAGTGTTCTTAATAGATAG.................................................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................GTTCACAGTGTTCCTAATAGATAA.................................................................................................................... 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGGTAGT................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGCGTTCCTAATAGATAG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTGCCTAATAGATAG.................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATGTT................................................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATACATAGT................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGGGTTCCTTATAGATAGT................................................................................................................... 24 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................TCACAGGGTTCCTAATAGATAGT................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCTTAATAGATAGT................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTCA................................................................................................................. 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................CAGTGTTCCTAATAGATAGTTTCAA.............................................................................................................. 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGAAAGT................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GTGTTCCTAATAGGTAGT................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CACAGTGTTCCTAATAGATAG.................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATTGATAG.................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TCCAGTGTTCCTAATAGATAA.................................................................................................................... 21 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTGCC................................................................................................................ 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCAAAGTGTTCCTAATAGATAG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCATAGTGTTCCTAATAGATAG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTGCTAATAGATAGT................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................GCTCCTAATAGATAGT................................................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AGTGTTCCTAATAGATA..................................................................................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GTTCCTAATAGATAGTA.................................................................................................................. 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCAAAGTGTTCCTAATAGATAGTC.................................................................................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................ATAAGGATGGGATAACGCTG.............................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................TATCTTTAGCAACACTTT...................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................GATTCACAGTGTTCCTAATAGATAGT................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCGTAATAGATAGT................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGACAGT................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GCGTTCCTAATAGATAGT................................................................................................................... 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ATTCACAGTGTTCCTAATAGATAGA................................................................................................................... 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGGGCTCCTAATAGATAG.................................................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATGGT................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAAATAGT................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................GTGTTCCTAATAGATAGTA.................................................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................GTTCCTAATAGATCGT................................................................................................................... 16 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAGTAGA....................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................ACAGTGTTCCTAATAGATAGTTTC................................................................................................................ 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTACTAGATAGT................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGAAA..................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTGACAGTGTTCCTAATAGATAG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTC.................................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................AAAGCTTGCTTTCACAGCTGTA........ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCTCAGTGTTCCTAATAGATAGT................................................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................TATCTTTAGCAACACTTTTGAGA................................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................CTTCACAGTGTTCCTAATAGATAGT................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTCCCTAATAGATAG.................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TATCTTTAGCAACACTTTTGAGG................................................................................. 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
........................................................TCATGATTACCATTCATATCC........................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTATA................................................................................................................ 27 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................GTGTTCACAGTGTTCCTAATAGATAGT................................................................................................................... 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAACAGATAG.................................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTAACAGTGTTCCTAATAGATAGT................................................................................................................... 24 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGGGTTCCTAATAGATAGTTAA................................................................................................................ 27 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGGTCCTGATAGATAG.................................................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................ATTCACAGTGTTCCTAATAGATAGTA.................................................................................................................. 26 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAGTTAT................................................................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATCGT................................................................................................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAGTAGATAGT................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................TATTTTTAGCAACACTTTTGAGA................................................................................. 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CACAGTGTTCCTAATAGA....................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACCGTGTTCCTAATACACAGT................................................................................................................... 24 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGAAAA.................................................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................ATATCTTTAGCAACACTTTTGAGT................................................................................. 24 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTGATAGATAG.................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTTCCTAATAGATAAAT.................................................................................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCGCAGTGTTCCTAATAGATAGT................................................................................................................... 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................TGTTCCTAATAGATAGTAAA................................................................................................................ 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................TTCACAGTGTCCCTAAT.......................................................................................................................... 17 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................TTGAGACAAGAATGGGATGAC.................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............CAAGAAAACTGGTGAACTTTTT..................................................................................................................................................................................... 22 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..............................................................................................................................................GGGATAACGCTGAAAGCA........................................................ 18 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............GGAATAAAAATTGTGAAATTT....................................................................................................................................................................................... 21 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................GAAAAATTGTGAAATT........................................................................................................................................................................................ 16 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
................GAAAAATTGTGAAATTT....................................................................................................................................................................................... 17 0 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................TTGTGAAAGTTTTTATATA............................................................................................................................................................................... 19 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................ATGGGAGAGCGCTGCAA........................................................... 17 2 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................TGGACGGGATAACGCTG.............................................................. 17 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................GGATAACGCTGAAAGCA........................................................ 17 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................GATGGGAGAGCGCTGCA............................................................ 17 2 17 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

CCAAAATCTCGACGTTCTTTTTAACACTTTAAAAAATATTTATAATGTTTATAATAAGTACTAATGGTAAGTATAGGAAGTGTCACAAGGATTATCTATCAATAATAATGTGATAGAAATCGTTGTGAAAACTCTATTCCTACCCTATTGCGACGTTCTTAATATTTGTAAAGGTTAGGTAGTTAGATTCGAACTAAAGTGTCGACTTTTCTCACT
*******************************************************************...((((((.((((..(((.((((((.((((.(((((((((....)).))))))))))).))))))..))))))).)))))).....************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
................................................................................................................................................................................AGGTAGTTAGATTCGAACTAAAGTGT.............. 26 0 1 1.00 1 1 0 0 0 0
...........................................................ACTAATGGTAAGTATAGGAAGTGTCAC.................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................ATTTGTAAAGGTTAGGTAGTTAG.............................. 23 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................AACTCTGTTCTTACCCTACTG.................................................................. 21 3 2 0.50 1 0 1 0 0 0
.....................................................................................................................................................................TTGTTAAGGTTAGGTAGT................................. 18 1 2 0.50 1 0 0 1 0 0
......TCTCGTCGTTCTGTTTCACACT............................................................................................................................................................................................ 22 3 4 0.25 1 0 0 1 0 0
..........................................TGATGTTTATAGTAAGTGCT.......................................................................................................................................................... 20 3 12 0.17 2 0 0 0 2 0
.....................................................................................CAAGGAATCTCTCTCAATA................................................................................................................ 19 3 17 0.06 1 0 0 0 0 1
......................................................................................................TACTAATGTGCTAGAAA................................................................................................. 17 2 20 0.05 1 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:3954200-3954415 - dsi-mir-982a GGTTTTAGAGCTGCAAGAAAAATTGTGAAATTTTTTATAAATATTACAAATATTATTCATGAT------------------------TACCATTCATATCCTTCACAGTGTTCCTAATAGATAGTTATTATTACA-CTATCTTTAGCAACACTTTTGAGATAAGGATGGGATAACG-CTGCAAGA----ATT--ATAAACATTTC---------------------CAATCCATCAATCTAAGCTTGA--TTTCACAGCTG------AAAAGAGTGA
droSec2 scaffold_4:2465083-2465318 + dse_38 GGTTATAGAGCTGCAAGAAAAATTGTGAAATTTTTTACAAATATTAAGAATATTACAAATTAT------------------------TACCATTCATATCCTGGACAGTGTTCCTAATAGTCTGTTATTATTACA-CAAACCTTGGGAATACTTTCGAGATAAGGATGGCATAACG-CTGCAAAAAT-AAGT--ATAAACATATC----CCTATCCATCATCAAATCAATCCATTAATCTAAGATTGA--TTTCAGTTCTG------AAAAGAGTGA
dm3 chrX:4259614-4259849 - dme-mir-982 GGTTTTAGAGCTGCAAGAAAAATTGTGCTATTTTTT------CTGACAAATATTACGAATGAT------------------------TACCATTCATATCCTTGGAACAATTCCTAATAGAATGTTATTATTACAACAATCTTTAGCAAGACTTTCGAGATAAGGATGGCATAACG-CTGCAAAAAAAAAAT--ATAAAAATTTACATACTTATCAATCATCTAATCAATCCATCAATCTAAGATTGA--TTTCAGTGCTA------AAAAGAGTGA
droYak3 X:4178467-4178695 + dya_119 GGGTTTAGTGCTGCAGCAAAAATGGTGA--------------CTTAAAAATATGCCAAATGATTCAAATAAATTAAAAAAATTTACATGTCAGTCTAGTCTCAGGAGATATAACTCT-AAGATTTTGTTATTACATAAATCTTAGGTTATGTTTTCTGAAACAAGGTGGTTTGGCGTCAGCAAAATA-AAGTTTATAAATATTT--------------------------------ATTAAATAGTGATGTTTCACATCCAAACACAGACGGAAATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGTTTTAGAGCTGCAAGAAAAATTGTGAAATTTTTTATAAATATTACAAATATTATTCATGAT------------------------TACCATTCATATCCTTCACAGTGTTCCTAATAGATAGTTATTATTACA-CTATCTTTAGCAACACTTTTGAGATAAGGATGGGATAACG-CTGCAAGA----ATT--ATAAACATTTC---------------------CAATCCATCAATCTAAGCTTGA--TTTCACAGCTG------AAAAGAGTGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................TTCACAGTGTTCCTAATAGATAG.........................................................................................................................................................2311531.00153116580115021000080490156010
.....................................................................................................TTCACAGTGTTCCTAATAGATAGT........................................................................................................................................................2411184.00118436578030842113510451162010
.....................................................................................................TTCACAGTGTTCCTAATAGATA..........................................................................................................................................................221319.0031903002622000002050000
.....................................................................................................TTCACAGTGTTCCTAATAGA............................................................................................................................................................201162.001620000141039017001000
.....................................................................................................TTCACAGTGTTCCTAATAGAT...........................................................................................................................................................211141.0014101001033010074022000
.....................................................................................................TTCACAGTGTTCCTAATA..............................................................................................................................................................181139.001390000134200002001000
.....................................................................................................TTCACAGTGTTCCTAATAG.............................................................................................................................................................191109.001090000105100003000000
.............................................................................................................GTTCCTAATAGATAGT........................................................................................................................................................16153.0053000000000053000000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGTA.......................................................................................................................................................25152.0052020000000032045000
......................................................................................................TCACAGTGTTCCTAATAGATAGT........................................................................................................................................................23140.0040010030110007000000
......................................................................................................TCACAGTGTTCCTAATAGATAG.........................................................................................................................................................22131.0031020027100000001000
.....................................................................................................TTCACAGTGTTCCTAATAGATAA.........................................................................................................................................................23130.0030010000000000029000
...........................................................................................................GTGTTCCTAATAGATAGT........................................................................................................................................................18129.0029000000000029000000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGA........................................................................................................................................................24119.0019000000000032014000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGTT.......................................................................................................................................................25114.001400006000002006000
.........................................................................................................................................TATCTTTAGCAACACTTTTGAG......................................................................................................................22113.001301102000001008000
.....................................................................................................TTCACAGTGTTCCTAATAGATAAA........................................................................................................................................................24110.0010000000000000010000
..............................................................................................................TTCCTAATAGATAGT........................................................................................................................................................1519.00900000000009000000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGG........................................................................................................................................................2418.00804300000000100000
........................................................................................................ACAGTGTTCCTAATAGATAGT........................................................................................................................................................2118.00800000000008000000
......................................................................................................TCACAGTGTTCCTAATAG.............................................................................................................................................................1817.00700007000000000000
......................................................................................................TCACAGTGTTCCTAATAGA............................................................................................................................................................1916.00600006000000000000
.......................................................................................................CACAGTGTTCCTAATAGATAGT........................................................................................................................................................2216.00600003000003000000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGTAT......................................................................................................................................................2616.00600000000000006000
.........................................................................................................................................TATCTTTAGCAACACTTTTGA.......................................................................................................................2116.00600001000300101000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGTTA......................................................................................................................................................2615.00500000000000005000
.....................................................................................................TTCACAGTGTTCCTAAT...............................................................................................................................................................1714.00400000000003001000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGAA.......................................................................................................................................................2514.00400000000000004000
............................................................................................................TGTTCCTAATAGATAGT........................................................................................................................................................1713.00300000000003000000
.........................................................................................................CAGTGTTCCTAATAGATAGT........................................................................................................................................................2013.00300000000003000000
....................................................................................................CTTCACAGTGTTCCTAATAGATAG.........................................................................................................................................................2413.00300003000000000000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGC........................................................................................................................................................2413.00301100000001000000
......................................................................................................TCACAGTGTTCCTAATAGATAGTA.......................................................................................................................................................2413.00300000000000003000
.....................................................................................................TTCACAGTGTTCCTA.................................................................................................................................................................1513.00300000000003000000
.....................................................................................................TTCACAGTGTTCCTAATAGATAAAA.......................................................................................................................................................2513.00300000000000003000
..........................................................................................................AGTGTTCCTAATAGATAGT........................................................................................................................................................1913.00300000000003000000
.....................................................................................................TTCACAGTGTTCCTAATAGAA...........................................................................................................................................................2112.00200000000000002000
......................................................................................................TCACAGTGTTCCTAATAGAT...........................................................................................................................................................2012.00200002000000000000
.........................................................................................................CAGTGTTCCTAATAGATAG.........................................................................................................................................................1912.00200001000001000000
...........................................................................................................GTGTTCCTAATAGATAG.........................................................................................................................................................1712.00200000000002000000
.....................................................................................................TTCACAGTGTTCCTAA................................................................................................................................................................1612.00200000000002000000
........................................................................................................ACAGTGTTCCTAATAGATAG.........................................................................................................................................................2012.00200002000000000000
.....................................................................................................TTCACAGTGTTCCTAATAGATAT.........................................................................................................................................................2312.00200000000000002000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGTTT......................................................................................................................................................2612.00200000000000002000
......................................................................................................TCACAGTGTTCCTAATAGATA..........................................................................................................................................................2112.00200001100000000000
.......................................................................................................CACAGTGTTCCTAATAGATAG.........................................................................................................................................................2111.00101000000000000000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGTGCC.....................................................................................................................................................2711.00100000000001000000
..........................................................................................................AGTGTTCCTAATAGATA..........................................................................................................................................................1711.00100000000001000000
.............................................................................................................GTTCCTAATAGATAGTA.......................................................................................................................................................1711.00100000000001000000
...............................................................................................................................................................ATAAGGATGGGATAACG-CTG.................................................................................................2011.00100000000000100000
.........................................................................................................................................TATCTTTAGCAACACTTT..........................................................................................................................1811.00100001000000000000
...........................................................................................................GTGTTCCTAATAGATAGTA.......................................................................................................................................................1911.00100000000001000000
........................................................................................................ACAGTGTTCCTAATAGATAGTTTC.....................................................................................................................................................2411.00100000000001000000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGTC.......................................................................................................................................................2511.00100000000000001000
.........................................................................................................................................TATCTTTAGCAACACTTTTGAGA.....................................................................................................................2311.00100000000000001000
....................................................................................................CTTCACAGTGTTCCTAATAGATAGT........................................................................................................................................................2511.00100001000000000000
.........................................................................................................................................TATCTTTAGCAACACTTTTGAGG.....................................................................................................................2311.00100100000000000000
........................................................TCATGAT------------------------TACCATTCATATCC................................................................................................................................................................................2111.00100001000000000000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGTATA.....................................................................................................................................................2711.00100000000000001000
.....................................................................................................TTCACAGTGTTCCTAATAGATAGTTAT.....................................................................................................................................................2711.00100000000000001000
.......................................................................................................CACAGTGTTCCTAATAGA............................................................................................................................................................1811.00100001000000000000
................GAAAAATTGTGAAATT.....................................................................................................................................................................................................................................................1670.14100000000001000000
................GAAAAATTGTGAAATTT....................................................................................................................................................................................................................................................1770.14100000000001000000
droSec2
GGTTATAGAGCTGCAAGAAAAATTGTGAAATTTTTTACAAATATTAAGAATATTACAAATTAT------------------------TACCATTCATATCCTGGACAGTGTTCCTAATAGTCTGTTATTATTACA-CAAACCTTGGGAATACTTTCGAGATAAGGATGGCATAACG-CTGCAAAAAT-AAGT--ATAAACATATC----CCTATCCATCATCAAATCAATCCATTAATCTAAGATTGA--TTTCAGTTCTG------AAAAGAGTGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................AAACCTTGGGAATACTTTCGAG......................................................................................................................222448.00896287695841
..........................................................................................................................................AACCTTGGGAATACTTTCGAG......................................................................................................................212182.003641342417
.........................................................................................................................................AAACCTTGGGAATACTTTCGA.......................................................................................................................21280.00160114487
..........................................................................................................................................AACCTTGGGAATACTTTCGAGT.....................................................................................................................22250.0010018955
.........................................................................................................................................AAACCTTGGGAATACTTTCG........................................................................................................................20228.005605123
..........................................................................................................................................AACCTTGGGAATACTTTCGAGA.....................................................................................................................22226.505304823
.....................................................................................................TGGACAGTGTTCCTAATAGTCTGT........................................................................................................................................................24221.00427131210
..........................................................................................................................................AACCTTGGGAATACTTTCGA.......................................................................................................................20213.502712501
.........................................................................................................................................AAACCTTGGGAATACTTTCGAGA.....................................................................................................................23210.502101722
.....................................................................................................TGGACAGTGTTCCTAATAGTCTG.........................................................................................................................................................2324.0086011
.........................................................................................................................................AAACCTTGGGAATACTTTCGAGT.....................................................................................................................2323.0060600
..........................................................................................................................................AACCTTGGGAATACTTTCGAGC.....................................................................................................................2223.0060600
...........................................................................................................................................ACCTTGGGAATACTTTCGAG......................................................................................................................2022.0040400
.........................................................................................................................................AAACCTTGGGAATACTTTCGAGTAT...................................................................................................................2521.5030300
..........................................................................................................................................AACCTTGGGAATACTTTCGAGTAT...................................................................................................................2421.5030300
.........................................................................................................................................AAACCTTGGGAATACTTTCGAT......................................................................................................................2221.0020200
.....................................................................................................TGGACAGTGTTCCTAATAGTCT..........................................................................................................................................................2221.0020101
..........................................................................................................................................AACCTTGGGAATACTTTCGAA......................................................................................................................2121.0020200
.........................................................................................................................................AAACCTTGGGAATACTTTCGAGTA....................................................................................................................2420.5010100
..........................................................................................................................................AACCTTGGGAATACTTTCGAT......................................................................................................................2120.5010100
.....................................................................................................TGGACAGTGTTCCTAATAGTC...........................................................................................................................................................2120.5010100
...........................................................................................................................................ACCTTGGGAATACTTTCGAGT.....................................................................................................................2120.5010100
.............................................................................................................................................CTTGGGAATACTTTCGAGA.....................................................................................................................1920.5010100
..........................................................................................................................................AACCTTGGGAATACTTTCGATT.....................................................................................................................2220.5010100
..........................................................................................................................................AACCTTGGGAATACTTTCGT.......................................................................................................................2020.5010100
.....................................................................................................TGGACAGTGTTCCTAATAGTCTGTTT......................................................................................................................................................2620.5010100
..........................................................................................................................................AACCTTGGGAATACTTTCGAGTC....................................................................................................................2320.5010100
..........................................................................................................................................AACCTTGGGAATACTTTCGAGAT....................................................................................................................2320.5010100
......................................................................................................GGACAGTGTTCCTAATAGTCTGT........................................................................................................................................................2320.5011000
.........................................................................................................................................AAACCTTGGGAATACTTTCGACT.....................................................................................................................2320.5010100
.....................................................................................................TGGACAGTGTTCCTAATAGTCTGTC.......................................................................................................................................................2520.5010100
.....................................................................................................TGGACAGTGTTCCTAATAGTCTGTTAAA....................................................................................................................................................2820.5010100
.....................................................................................................TGGACAGTGTTCCTAATAGTCTGTT.......................................................................................................................................................2520.5010001
.........................................................................................................................................AAACCTTGGGAATACTTTCGAGC.....................................................................................................................2320.5010100
..........................................................................................................................................AACCTTGGGAATACTTTCG........................................................................................................................1920.5010100
dm3
GGTTTTAGAGCTGCAAGAAAAATTGTGCTATTTTTT------CTGACAAATATTACGAATGAT------------------------TACCATTCATATCCTTGGAACAATTCCTAATAGAATGTTATTATTACAACAATCTTTAGCAAGACTTTCGAGATAAGGATGGCATAACG-CTGCAAAAAAAAAAT--ATAAAAATTTACATACTTATCAATCATCTAATCAATCCATCAATCTAAGATTGA--TTTCAGTGCTA------AAAAGAGTGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................TACTTATCAATCATCTAATCAATCCAT...........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................CTTTCGAGATAAGGATGG............................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TGCAAAAAAAAAAT--ATAAAA.............................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTTT------CTGACAAATATTACCC...........................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TTCGAGATAAGGATC.............................................................................................................15120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droYak3
GGGTTTAGTGCTGCAGCAAAAATGGTGA--------------CTTAAAAATATGCCAAATGATTCAAATAAATTAAAAAAATTTACATGTCAGTCTAGTCTCAGGAGATATAACTCT-AAGATTTTGTTATTACATAAATCTTAGGTTATGTTTTCTGAAACAAGGTGGTTTGGCGTCAGCAAAATA-AAGTTTATAAATATTT--------------------------------ATTAAATAGTGATGTTTCACATCCAAACACAGACGGAAATGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................TCTTAGGTTATGTTTTCTGAAA....................................................................................................................22132.0032141750040010
...........................................................................................................................................TCTTAGGTTATGTTTTCTGA......................................................................................................................20118.001812910050000
...........................................................................................................................................TCTTAGGTTATGTTTTCTGAA.....................................................................................................................21116.001611920030000
...........................................................................................................................................TCTTAGGTTATGTTTTCTGAAAA...................................................................................................................2318.00803410000000
....................................................................................................TCAGGAGATATAACTCT-AAGATT.........................................................................................................................................................2318.00801700000000
....................................................................................................TCAGGAGATATAACTCT-AAGATC.........................................................................................................................................................2313.00300300000000
...........................................................................................................................................TCTTAGGTTATGTTTTCTGAAT....................................................................................................................2213.00301100010000
..........................................................................................................................................ATCTTAGGTTATGTTTTCTGA......................................................................................................................2112.00201000010000
............................................................................................................................................CTTAGGTTATGTTTTCTGAAAA...................................................................................................................2211.00101000000000
....................................................................................................TCAGGAGATATAACTCT-AAGATTT........................................................................................................................................................2411.00100100000000
..........................................................................................................................................ATCTTAGGTTATGTTTTCTGAA.....................................................................................................................2211.00110000000000
....................................................................................................TCAGGAGATATAACTCT-AAGA...........................................................................................................................................................2111.00100100000000
...........................................................................................................................................TCTTAGGTTATGTTTTCTGAAC....................................................................................................................2211.00100100000000
..........................................................................................................................................ATCTTAGGTTATGTTTTCTGAAC....................................................................................................................2311.00100100000000

Generated: 05/15/2015 at 02:35 PM