ID:

dsi-mir-219

 Coordinate:

3l:16883585-16883681 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

5pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-32.5 -32.3 -32.3

Flybase annnotation

utr5 [utr5_plus_8436]

No Repeatable elements found

Sense Strand Reads

CCAGGATGAAAAAGCTTGCGCCGCGGAGCGAAAATAAATAAATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATATTCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACTTTTATTGAAACGAAATC

*****************************************************(((.(((((.((((.((((.(((((..(((((((((((..(((((...))))))))))))))))..))))))))).)))).)))))..))).**************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002

Head

 M023

head

 O001

Testis

 M053

female body

 M025

embryo

 M024

male body		 GSM343915

embryo

 SRR902009

testis

 SRR553486

Makindu_3 day-old ovaries

 SRR553487

NRT_0-2 hours eggs

 SRR553488

RT_0-2 hours eggs

 SRR618934

dsim w501 ovaries

 SRR902008

ovaries
....................................................................TGATTGTCCAAACGCAATTCT............................................................................................................ 21 0 1 2637.00 2637 2179 299 94 43 0 12 0 7 1 2 0 0 0
....................................................................TGATTGTCCAAACGCAAT............................................................................................................... 18 0 1 1679.00 1679 1544 8 127 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTC............................................................................................................. 20 0 1 1631.00 1631 543 1010 35 11 3 29 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 0 1 733.00 733 454 120 58 75 17 4 2 1 1 0 0 0 1
....................................................................TGATTGTCCAAACGCAATTCTT........................................................................................................... 22 0 1 336.00 336 270 23 22 21 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATT.............................................................................................................. 19 0 1 104.00 104 77 22 5 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCG................................................................... 22 0 1 79.00 79 0 23 0 0 25 0 28 1 1 0 0 0 1
....................................................................TGATTGTCCAAACGCAATTCTTGT......................................................................................................... 24 0 1 41.00 41 30 0 11 0 0 0 0 0 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 23.00 23 0 19 0 0 2 2 0 0 0 0 0 0 0
.......................................................................TTGTCCAAACGCAATTCTTG.......................................................................................................... 20 0 1 19.00 19 0 17 0 0 1 1 0 0 0 0 0 0 0
.....................................................................TATTGTCCAAACGCAATTCTTG.......................................................................................................... 22 1 1 18.00 18 0 16 0 0 0 2 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACTCAATTCT............................................................................................................ 21 1 1 18.00 18 0 17 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGC.................................................................... 21 0 1 15.00 15 0 9 0 0 5 0 1 0 0 0 0 0 0
.....................................................................GATTGTCCAAACGCAATTCTTG.......................................................................................................... 22 0 1 15.00 15 8 0 5 2 0 0 0 0 0 0 0 0 0
.....................................................................GATTGTCCAAACGCAATTCT............................................................................................................ 20 0 1 14.00 14 14 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATTGTCCAAACGCAATTCTTG.......................................................................................................... 21 0 1 13.00 13 0 11 0 1 0 1 0 0 0 0 0 0 0
........................................................................TGTCCAAACGCAATTCTTG.......................................................................................................... 19 0 1 8.00 8 5 3 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAGACGCAATTCTTG.......................................................................................................... 23 1 1 7.00 7 0 3 0 4 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATC...................................................................... 19 0 1 7.00 7 0 5 0 0 2 0 0 0 0 0 0 0 0
.....................................................................GATTGTCCAAACGCAATTC............................................................................................................. 19 0 1 7.00 7 7 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................GTCCAAACGCAATTCTTG.......................................................................................................... 18 0 1 6.00 6 0 5 0 0 1 0 0 0 0 0 0 0 0
........................................................................TGTCCAAACGCAATTCTT........................................................................................................... 18 0 1 6.00 6 6 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCGA.................................................................. 23 1 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTTTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 5.00 5 0 5 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................AAGGGTTGCGACTGGGCATCGC.................................................................... 22 0 1 4.00 4 0 3 0 0 1 0 0 0 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTC............................................................................................................. 20 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACTCAATTC............................................................................................................. 20 1 1 4.00 4 0 4 0 0 0 0 0 0 0 0 0 0 0
...................................................................ATGATTGTCCAAACGCAAT............................................................................................................... 19 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................TTGTCCAAACGCAATTCTT........................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTCT............................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTGTT........................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATTGTCCAAACGCAATTC............................................................................................................. 18 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGCCCAAACGCAATTCT............................................................................................................ 21 1 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0 0
..........TAAGCTTGCGCGGCGGAG......................................................................................................................................................................... 18 2 1 2.00 2 0 0 0 1 0 0 0 0 0 0 0 1 0
....................................................................TGATTGTCCAAACGCA................................................................................................................. 16 0 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0
....................................................................TGATTGTCCAGACGCAATTC............................................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TCATTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TTATTGTCCAAACGCAATTCTT........................................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGCCCAAACGCAATTC............................................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACTCAATTCTT........................................................................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTCTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCC............................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACCCAATTC............................................................................................................. 20 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCGGACGCAATTCTTG.......................................................................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCG............................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCG..................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAGACGCAATTCT............................................................................................................ 21 1 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTCTCCAGACGCAATTCTTG.......................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCATTTCTT........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACTCAATT.............................................................................................................. 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................ATTGTCCAAACGCAATTCT............................................................................................................ 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGGTGCGACTGGGCATCGC.................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................GATTGTCCAAACGCAATT.............................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTTGC......................................................................................................... 24 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACCCAATTCT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGTAATTCT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................TTGATTGTCCAAACGCAATTCT............................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGAAATTCT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTT............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................GGCTGATTGTCCAAACGCAATTC............................................................................................................. 23 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................TTATTGTCCAAACTCAATTCTTG.......................................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCGC.................................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................TGTTGATTGTCCAAACGCAATTC............................................................................................................. 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
....................................................................TGATTGTCCAAACGCGATTC............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................GATTGTCCAAACGCA................................................................................................................. 15 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTCTG........................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACACAATTCTTG.......................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................TGTCCAAACGCAATTCTTGT......................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCAATTTG............................................................................................................ 21 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTCGGCATCGCG................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................TGAATGTCCAAACGCAATTC............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGTAATTCTT........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TGTGTCCAAACGCAATTCTTG.......................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCGGACGCAATTCT............................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTTTCCAAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TTATTCTCCAAACGCAATTCTTG.......................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCTATTCTTG.......................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................TGATTCTCCAAACGCAATTCT............................................................................................................ 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCGT.................................................................. 23 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................TGATTTTCCAAACGCAATTCTT........................................................................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCATCGCGG.................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TCATTGTCCAAACGCAATTCTGG.......................................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................ATGGTTGCGACTGGGCATCGC.................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................TATTGTCCAAACGCAATTCT............................................................................................................ 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TCATTGTCCAAACTCAATTC............................................................................................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCCATTCTT........................................................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGACTGGGCAT....................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGC.................................................................................................................. 15 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................AGGGATGCGAAGGGGCATCGCG................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................TATGATTGTCCAAACGCAATTCTTG.......................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................TATTGTCCAAACGCAATTCTT........................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGGGACTGGGCATCGCG................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................TGATTATCCAAACGCAATTC............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATCGTCCAAACGCAATTC............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATCGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................TATTGTCCAAACTCAATTCT............................................................................................................ 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................TCTGTCCAAACGCAATTCTTG.......................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAATGCAATTC............................................................................................................. 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGTTGCGGCTGGGCATCGCG................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................TGACTGTCCAAACGCAATTCTTG.......................................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................AGGGAAGCGACTGGACATCGCG................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................TTTGGTTAATTCGAT.......................................................................................................................................... 15 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................TGATTGTCCAAACGCATTCC............................................................................................................. 20 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCATTCT............................................................................................................. 20 3 8 0.25 2 0 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................TGATTGTCCAAACGCATTCTT............................................................................................................ 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................GGTTGATTAGTTTTTTAGCTA................................................................................................................................. 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................TTCGTTTTTTAGCTAT................................................................................................................................ 16 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GGTCCTACTTTTTCGAACGCGGCGCCTCGCTTTTATTTATTTATAAACCAATTAAGCTAAAAATCGATACTAACAGGTTTGCGTTAAGAACAACTATAAGTTATAAGTTCCCAACGCTGACCCGTAGCGCCGAGCTTTATTCTTATGTTGAGCCGTTGGTTTAGTGGTGACTTCACTTGAAAATAACTTTGCTTTAG

****************************************************(((.(((((.((((.((((.(((((..(((((((((((..(((((...))))))))))))))))..))))))))).)))).)))))..))).***************************************************** 		Read size # Mismatch Hit Count Total Norm Total O002

Head

 SRR553488

RT_0-2 hours eggs

 GSM343915

embryo
............TCGAACGCGGCGCCTCGC....................................................................................................................................................................... 18 0 1 1.00 1 1 0 0
.............CGAACGCGGCGCCTCGCT...................................................................................................................................................................... 18 0 1 1.00 1 1 0 0
..................................................................................................AGTTGTAAGTTCCCAA................................................................................... 16 1 3 0.33 1 0 1 0
.....................................................................CTATCACGTTTGTGTTAAGA............................................................................................................ 20 3 14 0.07 1 0 0 1
.................................................................................................AAGTTGTAACTTCCCAA................................................................................... 17 2 19 0.05 1 0 1 0
..................................................................................................AGTTGTAAGTGCCCAA................................................................................... 16 2 20 0.05 1 0 1 0
...............................................................................................AAAAGTTGTAAGTGCCCAA................................................................................... 19 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 3l:16883535-16883731 + dsi-mir-219 Known_mirbase CCA----GGATGAAAAA-GCTTGC-GCCGCGG--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACT-TTT-----ATTGAA----------ACGAAATC
droSec2 scaffold_0:9359429-9359625 + dse-mir-219 Known_mirbase CCA----GGATGAAAAA-GCTTGC-GCCGCGG--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGTAGTGAACT-TTT-----ATTGAA----------ACGAAATC
dm3 chr3L:17308056-17308252 + dme-mir-219 Known_mirbase CCA----GGATGAAATA-GCTTGC-GCCGCGG--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACT-TTT-----ATTGAA----------ACGAAATT
droEre2 scaffold_4784:16541269-16541466 - der-mir-219 Known_mirbase CCA----GGATGGAAAA-GCTTGC-GCCGCGA--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGTACATTTT-----ATTGAA----------ACGAAATT
droYak3 3L:16762539-16762741 - dya-mir-219 Known_mirbase CCA----GGATGAAAAA-GCTTGC-GCCGCGA--A----------------------------------------------G-CGAAGC---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGAACTTTTT-----ATCGAA----------ACGAAATT
droEug1 scf7180000409711:25968-26161 - AGC---TGGATGAAAAA-GCTTTT-GCTGCGT--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAGCCAAATCATCATTGAAGTGCATTG-TA---------AA----------CTGAAAAT
droBia1 scf7180000302428:6673808-6673998 + CCC----GGATACAAAA-GCTTTC-GCCGCGG--A----------------------------------------------G------C---G-AAACAAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCGTGAATCAAGTGCATTATTT-----ATCGAA----------A-------
droTak1 scf7180000415815:374398-374565 - CCAAGCCGGATGAAAAA-GCTTTC-GCTTCGG--A----------------------------------------------G------T---G-AGAATATATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAATC-------------------------------------------------
droEle1 scf7180000490993:219014-219215 + CAA----GATGGAAAAA-GCTATC-GCTGCGG--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAATTCATTTATAAACTGCATTA-TACGCCGTATTAA----------ATAATAAA
droRho1 scf7180000780124:81226-81421 + CG-----GGATGGAAAA-GCTATC-GCTGCGA--A----------------------------------------------G------C---G-AAAATAAATA--TATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAATCATCAATAAAGTGCTTT-ATA-----AATAAA----------ACGATACT
droFic1 scf7180000454107:825173-825376 + AC-----GGATCGAAAA-GCTTTC-GCTGCGG--A----------------------------------------------G------T---GCAAAATAAACA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAGTCATTA-TCATGTGCATTA-TA-----ATCGGAATTTGTTAAAAT--AGTC
droKik1 scf7180000302474:640158-640329 + CCA----GGAGG--AAA-GCT------------------------------------------------------------------------------ACATAGTTATACTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAT-T-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACGACTCGGCAACCAAGAC-----TGGCTGGAACT-ATA-----AATAAA----------CTAATCTA
droAna3 scaffold_13337:8265299-8265448 + dan-mir-219 Known_mirbase TGG----AGCTGAGAAAACTTTTC-GCAGTGA--C----------------------------------------------C------T---G-AAAAAC--AAAATAT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAAC---------------------------------------------------------------
droBip1 scf7180000396541:409844-409991 + GTA----GA--G-AAAA-CTTTTCAGCAGTGA--C----------------------------------------------C------T---G-AAAAACAAAA--TATTTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAAC---------------------------------------------------------------
dp5 XR_group6:9338082-9338308 - dps-mir-219 Known_mirbase C------AGATATAAAA-GCTTTC-AGTTCTCAGCTCTCAGCTCTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATCAGT--------ATC--AA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAAAT-----------------CTA-----ATTTAA----------ACGTACTC
droPer2 scaffold_35:387381-387600 + dpe-mir-219 Known_mirbase C------AGATATAAAA-GCTTTC-AGTTCTCAGC-------TCTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATCAGT--------ATC--AA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAAAT-----------------CTA-----ATTTAA----------GCGTACTC
droWil2 scf2_1100000004768:2086470-2086598 + dwi-mir-219 Known_mirbase --------------------------------------------------------------------------------------------G-AAAACA---A--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA-CCCAATAACCAAA---------------------------------------------------
droVir3 scaffold_13049:5991407-5991568 - dvi-mir-219 Known_mirbase CCA----TTATT------TTTTTT-GTCGCGC--------------------------------------------------------------TAAGTGTATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAACAACAAATAA-----------------------------------------
droMoj3 scaffold_6680:4316895-4317054 - dmo-mir-219 Known_mirbase CCA----GTGGCTAAAA-GCTTTC-A--------A----------------------------------------------G------TGTCTAAATACAAACA--TATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAA-AGCCAAA---------------------------------------------------
droGri2 scaffold_15110:13121786-13121945 + dgr-mir-219 Known_mirbase CAG----CGCCTGAA-AGCTTTTT-GCCATGA--A----------------------------------------------C----------------TTAACA--AACATTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAAACAC-----------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCA----GGATGAAAAA-GCTTGC-GCCGCGG--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACT-TTT-----ATTGAA----------ACGAAATCSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................2112637.0026372991204394217901200007000
......................................................................................................................................TGATTGTCCAAACGCAAT................................................................................................................................1811679.0016798000127154400000000000
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................2011631.0016311010293113554300000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................231733.00733120417755845401000211000
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................221336.003362300212227000000000000
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................191104.001042200057700000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG...................................................................................22179.007923025000010002811000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................24141.00410000113000000000000
.........................................................................................................................................TTGTCCAAACGCAATTCTTG...........................................................................................................................20119.0019171100000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC....................................................................................21115.001590500000000100000
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................22115.001500025800000000000
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................20114.0014000001400000000000
........................................................................................................................................ATTGTCCAAACGCAATTCTTG...........................................................................................................................21113.0013111010000000000000
..........................................................................................................................................TGTCCAAACGCAATTCTTG...........................................................................................................................1918.00830000500000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATC......................................................................................1917.00750200000000000000
.......................................................................................................................................GATTGTCCAAACGCAATTC..............................................................................................................................1917.00700000700000000000
...........................................................................................................................................GTCCAAACGCAATTCTTG...........................................................................................................................1816.00650100000000000000
..........................................................................................................................................TGTCCAAACGCAATTCTT............................................................................................................................1816.00600000600000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGA..................................................................................2315.00550000000000000000
..............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC....................................................................................2214.00430100000000000000
.....................................................................................................................................ATGATTGTCCAAACGCAAT................................................................................................................................1914.00400000400000000000
.........................................................................................................................................TTGTCCAAACGCAATTCTT............................................................................................................................1912.00200002000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGTT.........................................................................................................................2512.00200000200000000000
........................................................................................................................................ATTGTCCAAACGCAATTC..............................................................................................................................1812.00210000100000000000
......................................................................................................................................TGATTGTCCAAACGCA..................................................................................................................................1612.00200000000020000000
......................................................................................................................................TGATTGTCCAAACGCAATTCC.............................................................................................................................2112.00220000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCG.............................................................................................................................2112.00220000000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCG.....................................................................................2012.00220000000000000000
........................................................................................................................................ATTGTCCAAACGCAATTCT.............................................................................................................................1911.00110000000000000000
.......................................................................................................................................GATTGTCCAAACGCAATT...............................................................................................................................1811.00100000100000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGC..........................................................................................................................2411.00100010000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTT..............................................................................................................................2011.00110000000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGC..................................................................................2311.00110000000000000000
.......................................................................................................................................GATTGTCCAAACGCA..................................................................................................................................1511.00100000001000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTG............................................................................................................................2211.00100010000000000000
..........................................................................................................................................TGTCCAAACGCAATTCTTGT..........................................................................................................................2011.00100000100000000000
......................................................................................................................................TGATTGTCCAAACGCAATTTG.............................................................................................................................2111.00100010000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGT..................................................................................2311.00100000000000100000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGG..................................................................................2311.00110000000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCAT.......................................................................................1811.00100000100000000000
......................................................................................................................................TGATTGTCCAAACGC...................................................................................................................................1511.00100000000001000000
....................................................................................................................................TATGATTGTCCAAACGCAATTCTTG...........................................................................................................................2511.00100010000000000000
..............................................................................................................TTTGGTTAATTCGAT...........................................................................................................................................................1520.50100000000010000000
droSec2
CCA----GGATGAAAAA-GCTTGC-GCCGCGG--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGTAGTGAACT-TTT-----ATTGAA----------ACGAAATCSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................211353.003533223028
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................231298.002982710423
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG...................................................................................221135.001355157243
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................221121.001211063012
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................20130.003026004
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................22114.001414000
..............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC....................................................................................22114.001400122
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................19113.001330010
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................2017.0077000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGT..................................................................................2316.0060051
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGA..................................................................................2313.0030012
.........................................................................................................................................TTGTCCAAACGCAATTCTTG...........................................................................................................................2013.0030003
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC....................................................................................2113.0030012
.......................................................................................................................................GATTGTCCAAACGCAATTCTT............................................................................................................................2112.0022000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................2412.0020002
.........................................................................................................................................TTGTCCAAACGCAATTCTTGA..........................................................................................................................2111.0010001
..........................................................................................................................................TGTCCAAACGCAATTCTTG...........................................................................................................................1911.0010001
......................................................................................................................................TGATTGTCCAAACGCAATTCTA............................................................................................................................2211.0011000
........................................................................................................................................ATTGTCCAAACGCAATTCTTG...........................................................................................................................2111.0011000
.........................................................................................................................................TTGTCCAAACGCAATTCT.............................................................................................................................1811.0011000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCT...................................................................................2211.0010001
........................................................................................................................................ATTGTCCAAACGCAATTCT.............................................................................................................................1911.0010001
.................................................................................................................................................................................GGTTGCGACTGGGCATCGCG...................................................................................2011.0010001
......................................................................................................................................TGATTGTCCAAACGCAATTCG.............................................................................................................................2111.0011000
........................................................................................................................................ATTGTCCAAACGCAATTCTTT...........................................................................................................................2111.0011000
........................................................................................................................................ATTGTCCAAACGCAATTC..............................................................................................................................1811.0011000
dm3
CCA----GGATGAAATA-GCTTGC-GCCGCGG--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTGAAGTGAACT-TTT-----ATTGAA----------ACGAAATTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................21126557.0026557000012660012241020019000100002283896411945500000000000000000000003000000000000000000023343539017700027133846281307641497414929873840190231816101481129366842214020918069947486538000000000000000000000000000000000000196822460116723563129940101631246133123500000017930000000000000000000000000000000000100070000000010016000010160500000500000000000000000000000000008101130001000000010110000000000000000012301000000062
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................23119837.00198370000230010102004103900001000301131552341245027270000000000100000000000310000000000000000000000462702517200046109311154827146196727001016196180240133111160461568138959339248000000000000000000001000000000000000110010890712783653826961672460123441588701630000013890000000000000000000000000000031000000040000000014150120000380500000310000000000000000000000000000118020101000000030341000000000000000114210110000024
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................2218633.00863300003310101001010002000000004143550862922000000000000000000000012100000000000000000010099100200000216711335914531026975100090711411202250104802011111224681861670000000000000000000000000000000000007926360594241896903554815303247710000005290000000000000000000000000000000000000020000000000002000012010000060000000000000000000000000000333150030010000200000000000000000000200000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG...................................................................................2211753.001753000000010300000000000000000100000000000000001000000000000000000000000000000000000110011000020243012147180000000011000019413041406036000000000013300000000000000000000000201401201322111702602840000011500000000010000000000000000000000000001200000000286101350000913060000012000000000000000030000010000086874671133622410020000331434200001000000000001129120191516000000
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................201872.00872000021000000001001000000000075104911200000000000000000000000000000000000000000000101300020000006001832000111710000000000000510001300248111200000000000000000000000000000000000022380102041076110821030400000350000000000000000000000000000001000000000000000001000000041200000000000000000000000000000000000021140000010000000000000000000000000400000000000
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................191587.0058700000000000000000000000000011462523120000000000000000000000100000000000000000000000110000000007001001000041000001000100001210001000201114110000000000000000000000000000000000003050017111725726175526280000047000000000000000000000000000000000000000000000000000100001203000003000000000000000000000000000010020000010000000000000000000000000200000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................241325.00325000011000100000000000000000010413512000000000000000000000010000000000000000000000000000000000200200000020000000010000010000100010081300000000000000000000000000000000000026200170053804231301600000015000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000021010010000000000000000000000000000000000000000
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................221283.0028300000000000000000000000000001226280000000000000000000000000000000000000000000000001000000000000030000009000000000000000000000006155000000000000000000000000000000000000232107305342292712530000033000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................201142.001420000000000000000000000000000008140100000000000000000000000000000000000000000000000000000000000010000002000000000000004000000003112000000000000000000000000000000000000161403004160801301900000012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTT...........................................................................................................................231111.00111000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000010030000001000000000000101000000003121321000000000000000000000000000000000000870300140601000000004000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCG.............................................................................................................................21184.008400001000000000100000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000000000100200000000000000000000000000000000000002020002000280401000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GATTGTCCAAACGCAATTCTT............................................................................................................................21169.0069000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000002011000000000000000000000000000000000000143013001130206060000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGT..................................................................................23153.0053000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000003000000000000001000001000000000000000000000000000000000000000000100000010000053000000000000000000000000000000000000000000000000000000200000001000000000000000000000000000000000000044450210000000001100000000000000001911000000000
......................................................................................................................................TGATTGTCCAAACGCAAT................................................................................................................................18144.0044000000000000000000000000000160204100000000000000000000000000000000000000000000000000000000010021000004000000100000000000000000100000000000000000000000000000000000000000021000280020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000120000000000000000000000000000000100000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..........................................................................................................................24143.00430000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000200000050000000000000010000000010010000000000000000000000000000000000002603000004040200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011
......................................................................................................................................TGATTGTCCAAACGCAATTCA.............................................................................................................................21141.00410000200000000000000000000000000000000000000000000000000000000000000000000000000050000000000120000000001000400000000001000000000000000000000000000000000000000000000000230200100001060000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCC.............................................................................................................................21141.0041000030000002000000000000000000000000000000000000000000000000000000000000000000000000000010040020000007000000000000001000000001000000000000000000000000000000000000000210200210201050000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
........................................................................................................................................ATTGTCCAAACGCAATTCTTG...........................................................................................................................21132.0032000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000010000000000000000000000000000000000000000000000230211051305110000002000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTA...........................................................................................................................23132.0032000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000010010000001000000000000000000000000020000000000000000000000000000000000000110200141401140000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTC............................................................................................................................22130.00300000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000003003001002000100000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000015
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC....................................................................................21127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100110000000000000000010003000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001200000000001000001000000000000000000100000000000100300000000000100000000000000000521000000000
..............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC....................................................................................22127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000100000000000000001100000000000000000000000000000000000000000000020100511000000101000000000000000000900000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGATC................................................................................25124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000195000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGTCCAAACGCAATTCTTG...........................................................................................................................20123.0023000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000003000000000000001000000000000000000000000000000000000000000000000030000050302010000002000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTC...........................................................................................................................23118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000400400210001001000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCT.............................................................................................................................22116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000020100018000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TGTCCAAACGCAATTCTTG...........................................................................................................................19115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010040000000000000000000000000000001002000000000000000000000000000000000000000000010102020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTG............................................................................................................................22114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000200000000000000000000000000000000000000000000000000110000000105020000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTT..............................................................................................................................20114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000002001000000000000000000000000000000000000110100030200010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCA----GGATGGAAAA-GCTTGC-GCCGCGA--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGTACATTTT-----ATTGAA----------ACGAAATTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................2311017.00101794471410510
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................211333.00333252513003924
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG...................................................................................221199.00199802211131450
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................221155.001551281200240
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................22144.004444000000
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................20141.004130210080
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................19112.00128000040
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................20110.001010000000
.......................................................................................................................................GATTGTCCAAACGCAATTCTT............................................................................................................................2119.0099000000
..............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC....................................................................................2219.0090001260
.........................................................................................................................................TTGTCCAAACGCAATTCTTG...........................................................................................................................2018.0082000060
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC....................................................................................2117.0070310030
........................................................................................................................................ATTGTCCAAACGCAATTCTTG...........................................................................................................................2117.0077000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................2415.0051020020
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGT..................................................................................2314.0040001120
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..........................................................................................................................2413.0033000000
........................................................................................................................................ATTGTCCAAACGCAATTCTTGT..........................................................................................................................2213.0031000020
......................................................................................................................................TGATTGTCCAAACGCAATTCTTA...........................................................................................................................2313.0032000010
......................................................................................................................................TGATTGTCCAAACGCAATTCTTT...........................................................................................................................2312.0021000010
.......................................................................................................................................GATTGTCCAAACGCAATTC..............................................................................................................................1911.0011000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTG............................................................................................................................2211.0011000000
......................................................................................................................................TGATTGTCCAAACGCAATTCG.............................................................................................................................2111.0011000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCT...................................................................................2211.0010000010
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGAA.........................................................................................................................2511.0011000000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCT.............................................................................................................................2211.0011000000
......................................................................................................................................TGATTGTCCAAACGCAATTCA.............................................................................................................................2111.0011000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTA............................................................................................................................2211.0011000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGG..........................................................................................................................2411.0011000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCG.....................................................................................2011.0010000010
droYak3
CCA----GGATGAAAAA-GCTTGC-GCCGCGA--A----------------------------------------------G-CGAAGC---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCACCACTAAAGTGAACTTTTT-----ATCGAA----------ACGAAATTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................231987.009871192521271650000
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................211240.0024015204607800000
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................221162.001621149404400000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG...................................................................................221153.0015314124821163650010
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................20179.00792250002320000
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................22158.0058058000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC....................................................................................21119.0019601120000000
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................19113.001309100200010
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................20110.0010010000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................2419.00903001410000
.......................................................................................................................................GATTGTCCAAACGCAATTCTT............................................................................................................................2119.00909000000000
..............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC....................................................................................2218.00830320000000
..........................................................................................................................................TGTCCAAACGCAATTCTTG...........................................................................................................................1916.00606000000000
........................................................................................................................................ATTGTCCAAACGCAATTCTTG...........................................................................................................................2115.00505000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATC......................................................................................1915.00550000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCC.............................................................................................................................2114.00420200000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGT..................................................................................2313.00300110100000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCG.....................................................................................2013.00310200000000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCT.............................................................................................................................2213.00303000000000
...........................................................................................................................................GTCCAAACGCAATTCTTG...........................................................................................................................1812.00211000000000
.........................................................................................................................................TTGTCCAAACGCAATTCTTG...........................................................................................................................2011.00101000000000
.......................................................................................................................................GATTGTCCAAACGCAATTCTTGT..........................................................................................................................2311.00100010000000
......................................................................................................................................TGATTGTCCAAACGCAATTT..............................................................................................................................2011.00100001000000
......................................................................................................................................TGATTGTCCAAACGCAAA................................................................................................................................1811.00110000000000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCTT............................................................................................................................2311.00101000000000
..................................................................................................................................................................................GTTGCGACTGGGCATCGCG...................................................................................1911.00110000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTC............................................................................................................................2211.00101000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTGC...........................................................................................................................2311.00101000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..........................................................................................................................2411.00101000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGT....................................................................................2111.00100100000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGC..........................................................................................................................2411.00101000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGA..................................................................................2311.00110000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTT...........................................................................................................................2311.00101000000000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCTTG...........................................................................................................................2411.00101000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGTT.................................................................................2411.00110000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCAC.......................................................................................1811.00100100000000
......................................................................................................................................TGATTGTCCAAACGCAAAA...............................................................................................................................1940.25101000000000
droEug1
AGC---TGGATGAAAAA-GCTTTT-GCTGCGT--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAGCCAAATCATCATTGAAGTGCATTG-TA---------AA----------CTGAAAATSizeHit CountTotal NormTotal
No Reads
droBia1
CCC----GGATACAAAA-GCTTTC-GCCGCGG--A----------------------------------------------G------C---G-AAACAAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCGGCAACCAAATCGTGAATCAAGTGCATTATTT-----ATCGAA----------A-------SizeHit CountTotal NormTotal
No Reads
droTak1
CCAAGCCGGATGAAAAA-GCTTTC-GCTTCGG--A----------------------------------------------G------T---G-AGAATATATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAATC-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
CAA----GATGGAAAAA-GCTATC-GCTGCGG--A----------------------------------------------G------C---G-AAAATAAATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAATTCATTTATAAACTGCATTA-TACGCCGTATTAA----------ATAATAAASizeHit CountTotal NormTotal
No Reads
droRho1
CG-----GGATGGAAAA-GCTATC-GCTGCGA--A----------------------------------------------G------C---G-AAAATAAATA--TATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-TCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAGCAACCAAATCATCAATAAAGTGCTTT-ATA-----AATAAA----------ACGATACTSizeHit CountTotal NormTotal
No Reads
droFic1
AC-----GGATCGAAAA-GCTTTC-GCTGCGG--A----------------------------------------------G------T---GCAAAATAAACA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACAACTCAACAACCAAGTCATTA-TCATGTGCATTA-TA-----ATCGGAATTTGTTAAAAT--AGTCSizeHit CountTotal NormTotal
No Reads
droKik1
CCA----GGAGG--AAA-GCT------------------------------------------------------------------------------ACATAGTTATACTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAT-T-CCAATATTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATAAGAATACGACTCGGCAACCAAGAC-----TGGCTGGAACT-ATA-----AATAAA----------CTAATCTASizeHit CountTotal NormTotal
No Reads
droAna3
TGG----AGCTGAGAAAACTTTTC-GCAGTGA--C----------------------------------------------C------T---G-AAAAAC--AAAATAT-TTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAAC---------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................231162.001621172015226
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................211114.00114674013129
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG...................................................................................22186.008681016259
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................20154.00543140739
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................22141.004123104112
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................19112.0012200118
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................24111.0011100406
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................2216.006600000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGC....................................................................................2116.006210003
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................2014.004400000
..............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC....................................................................................2214.004010003
.......................................................................................................................................GATTGTCCAAACGCAATTC..............................................................................................................................1914.004300001
.......................................................................................................................................GATTGTCCAAACGCAATTCTT............................................................................................................................2113.003300000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCG.....................................................................................2012.002200000
......................................................................................................................................TGATTGTCCAAACGCAATTT..............................................................................................................................2012.002100001
........................................................................................................................................ATTGTCCAAACGCAATTCTTG...........................................................................................................................2112.002200000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..........................................................................................................................2411.001100000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATC......................................................................................1911.001010000
......................................................................................................................................TGATTGTCCAAACGCAATTCTC............................................................................................................................2211.001010000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTTG..........................................................................................................................2411.001100000
......................................................................................................................................TGATTGTCCAAACGCAATTCTG............................................................................................................................2211.001100000
................................................................................................................................................................................GGGTTGCGACTGGGCATCGCG...................................................................................2111.001100000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGG..........................................................................................................................2411.001100000
droBip1
GTA----GA--G-AAAA-CTTTTCAGCAGTGA--C----------------------------------------------C------T---G-AAAAACAAAA--TATTTTTGGTTAATTCAATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGAATT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATACGAATACAAC---------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
C------AGATATAAAA-GCTTTC-AGTTCTCAGCTCTCAGCTCTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATCAGT--------ATC--AA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCAGCAACCAAAAT-----------------CTA-----ATTTAA----------ACGTACTCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................231894.0089408427224130024
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................211493.00493031421630120020
...............................................................................................................................................................................AGGGTTGTGACTGGACATCGCG...................................................................................221185.001851171732018304102
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................221169.001690127035070000
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................201138.00138097133070000
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................22160.006006000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCC.............................................................................................................................21131.003100130000000
...............................................................................................................................................................................AGGGTTGTGACTGGACATCGC....................................................................................21123.002300404300012
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................20118.001801800000000
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................19116.001601105000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................24113.00130504040000
.......................................................................................................................................GATTGTCCAAACGCAATTCTT............................................................................................................................2118.0080800000000
..............................................................................................................................................................................AAGGGTTGTGACTGGACATCGC....................................................................................2218.0080020300003
.......................................................................................................................................GATTGTCCAAACGCAATTC..............................................................................................................................1916.0060600000000
......................................................................................................................................TGATTGTCCAAACGCAATTT..............................................................................................................................2014.0040301000000
...............................................................................................................................................................................AGGGTTGTGACTGGACATCGCGT..................................................................................2313.0030010101000
................................................................................................................................................................................GGGTTGTGACTGGACATCGCG...................................................................................2113.0030300000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGC..........................................................................................................................2413.0030003000000
..........................................................................................................................................TGTCCAAACGCAATTCTTG...........................................................................................................................1913.0030200100000
......................................................................................................................................TGATTGTCCAAACGCAATTCTC............................................................................................................................2213.0030003000000
.........................................................................................................................................TTGTCCAAACGCAATTCTT............................................................................................................................1912.0020101000000
...............................................................................................................................................................................AGGGTTGTGACTGGACATCG.....................................................................................2012.0020100010000
.......................................................................................................................................GATTGTCCAAACGCAATTCTTGT..........................................................................................................................2311.0010100000000
...............................................................................................................................................................................AGGGTTGTGACTGGACATC......................................................................................1911.0010010000000
.........................................................................................................................................TTGTCCAAACGCAATTCTTG...........................................................................................................................2011.0010100000000
......................................................................................................................................TGATTGTCCAAACGCAATTCA.............................................................................................................................2111.0010100000000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCTTG...........................................................................................................................2411.0010100000000
...............................................................................................................................................................................AGGGTTGTGACTGGACATCGCGG..................................................................................2311.0010000000001
.......................................................................................................................................GATTGTCCAAACGCAATTCTTT...........................................................................................................................2211.0010100000000
...............................................................................................................................................................................AGGGTTGTGACTGGACATCGCC...................................................................................2211.0010000010000
......................................................................................................................................TGATTGTCCAAACGCAATTCTCC...........................................................................................................................2311.0010010000000
........................................................................................................................................ATTGTCCAAACGCAATTCT.............................................................................................................................1911.0010001000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGTA.........................................................................................................................2511.0010100000000
.........................................................................................................................................TTGTCCAAACGCAATTCT.............................................................................................................................1811.0010001000000
........................................................................................................................................ATTGTCCAAACGCAATTCTTG...........................................................................................................................2111.0010100000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..........................................................................................................................2411.0010100000000
droPer2
C------AGATATAAAA-GCTTTC-AGTTCTCAGC-------TCTCAGCATCTAGTAGCCAGCATCCAGATACGAGTACTCGTATCAGT--------ATC--AA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATAT-CCAATACTCAAGGGTTGTGACTGGACATCGCGGCTCGAAATAAGAATACAACCCATCAACCAAAAT-----------------CTA-----ATTTAA----------GCGTACTCSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................231191.001912148120200
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................21196.009606509220
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................22164.006404604140
...............................................................................................................................................................................AGGGTTGTGACTGGACATCGCG...................................................................................22163.0063162414243
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................20118.00180100260
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................2419.009030150
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................2219.009090000
...............................................................................................................................................................................AGGGTTGTGACTGGACATCGC....................................................................................2117.007001330
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................1917.007040120
..............................................................................................................................................................................AAGGGTTGTGACTGGACATCGC....................................................................................2215.005300020
..........................................................................................................................................TGTCCAAACGCAATTCTTG...........................................................................................................................1914.004022000
...........................................................................................................................................GTCCAAACGCAATTCTTG...........................................................................................................................1813.003300000
...............................................................................................................................................................................AGGGTTGTGACTGGACATC......................................................................................1912.002100100
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................2012.002020000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTT...........................................................................................................................2312.002010100
...............................................................................................................................................................................AGGGTTGTGACTGGACATCGCT...................................................................................2212.002000020
.....................................................................................................................................ATGATTGTCCAAACGCAATTCT.............................................................................................................................2211.001010000
.......................................................................................................................................GATTGTCCAAACGCAATTCTT............................................................................................................................2111.001010000
.......................................................................................................................................GATTGTCCAAACGCAATTC..............................................................................................................................1911.001010000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTC...........................................................................................................................2311.001000010
..........................................................................................................................................................................ACTCAAGGGTTGTGACTGGA..........................................................................................2011.001000010
.........................................................................................................................................TTGTCCAAACGCAATTCTTG...........................................................................................................................2011.001000100
droWil2
--------------------------------------------------------------------------------------------G-AAAACA---A--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATAAGAATACA-CCCAATAACCAAA---------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................231486.004864537811448
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................211351.00351552690027
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................201263.00263169781114
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCG...................................................................................221176.00176182211341
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................22188.00887680112
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................19128.0028319006
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................22125.0025025000
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGC....................................................................................21121.0021101154
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................20116.0016016000
..............................................................................................................................................................................AAGGGTTGCATCTGGGCATCGC....................................................................................22112.001240053
........................................................................................................................................ATTGTCCAAACGCAATTCTTG...........................................................................................................................21110.001036001
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................2417.00701015
.......................................................................................................................................GATTGTCCAAACGCAATTC..............................................................................................................................1915.00505000
.........................................................................................................................................TTGTCCAAACGCAATTCTTG...........................................................................................................................2014.00420002
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCG.....................................................................................2014.00421001
...........................................................................................................................................GTCCAAACGCAATTCTTG...........................................................................................................................1814.00421001
..........................................................................................................................................TGTCCAAACGCAATTCTTG...........................................................................................................................1914.00411002
...............................................................................................................................................................................AGGGTTGCATCTGGGCATC......................................................................................1914.00400004
......................................................................................................................................TGATTGTCCAAACGCAATTCC.............................................................................................................................2112.00220000
........................................................................................................................................ATTGTCCAAACGCAATTCT.............................................................................................................................1911.00101000
......................................................................................................................................TGATTGTCCAAACGCAATTT..............................................................................................................................2011.00100001
......................................................................................................................................TGATTGTCCAAACGCAAT................................................................................................................................1811.00110000
......................................................................................................................................TGATTGTCCAAACGCAATTCG.............................................................................................................................2111.00100001
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCT...................................................................................2211.00110000
.......................................................................................................................................GATTGTCCAAACGCAATTCTC............................................................................................................................2111.00101000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCT.............................................................................................................................2211.00101000
.......................................................................................................................................GATTGTCCAAACGCAATT...............................................................................................................................1811.00101000
................................................................................................................................................................................GGGTTGCATCTGGGCATCGCG...................................................................................2111.00100010
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGG..........................................................................................................................2411.00101000
........................................................................................................................................ATTGTCCAAACGCAATTCTT............................................................................................................................2011.00101000
......................................................................................................................................TGATTGTCCAAACGCAATTCA.............................................................................................................................2111.00100001
......................................................................................................................................TGATTGTCCAAACGCAATTA..............................................................................................................................2011.00100001
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCGT..................................................................................2311.00100010
.................................................................................................................................................................................GGTTGCATCTGGGCATCGCG...................................................................................2011.00101000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCTTG...........................................................................................................................2411.00101000
droVir3
CCA----TTATT------TTTTTT-GTCGCGC--------------------------------------------------------------TAAGTGTATA--AATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAATACTCAAGGGTTGCGACTGGGCATCGCGGCTCGAAATGAGAATCCAACCCA-CAACCAAACAACAAATAA-----------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................2311947.00194706841800000000002671195615955660142187010002247000011000000000000000000010313100001004000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................2111553.001553114393200000000002621138315989600202152000000000000000000000000000000000011017000000003000001000
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................221857.00857021671000000000016472416658440117109000001102000000000000000000000000000012000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................201216.00216450821000000000018126426091100000000000000000000000000000000000004000000007000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCG...................................................................................221126.00126251190000000000111147211880000000000000000000000000000000000121720500000000000010000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................24187.00870020000000000022103966091600000000000000000000000000000000000004000000000000000000
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................22161.006101590000000000010000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................19143.004301170000000000056031102100000000000000000000000000000000000006000000000000000000
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................20120.002000200000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GATTGTCCAAACGCAATTCTT............................................................................................................................21117.001700160000000000000001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTT...........................................................................................................................23116.00160020000000000040002105200000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TGTCCAAACGCAATTCTTG...........................................................................................................................1917.0070021000000000021010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TGTCCAAACGCAATTCTT............................................................................................................................1816.0060010000000000001120000100000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATC......................................................................................1916.0060600000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................GATTGTCCAAACGCAATTC..............................................................................................................................1914.0040130000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................AAGGGTTGCGACTGGGCATCGC....................................................................................2213.0031001000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................ATTGTCCAAACGCAATTCT.............................................................................................................................1913.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGA..........................................................................................................................2413.0030000000000000020000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCTTG...........................................................................................................................2413.0030030000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCG.............................................................................................................................2112.0020000000000000001000000000000000000000000000000000000000000001000000000000000000
.........................................................................................................................................TTGTCCAAACGCAATTCT.............................................................................................................................1812.0020000000000000010001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................ATTGTCCAAACGCAATTCTTG...........................................................................................................................2112.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGG..................................................................................2312.0020200000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................ATTGTCCAAACGCAATTCTT............................................................................................................................2012.0020010000000000000100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGC..........................................................................................................................2411.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTC............................................................................................................................2211.0010000000000000000000000000000100000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGTT.........................................................................................................................2511.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCC...................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTA............................................................................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGA..................................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GTCCAAACGCAATTCTTG...........................................................................................................................1811.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGG..........................................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCC.............................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTG............................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TT-CAAATACTCAAGGGTT...................................................................................................1811.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTA...........................................................................................................................2311.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAAT................................................................................................................................1811.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATA...............................................................................................................................1911.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCG.....................................................................................2011.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
.......................................................................................................................................GATTGTCCAAACGCAATTCTG............................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCA.............................................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATGATTGTCCAAACGCAATT...............................................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TGTCCAAACGCAATTCTTC...........................................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTTA..........................................................................................................................2411.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGAAA........................................................................................................................2611.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TTGTCCAAACGCAATTCTTG...........................................................................................................................2011.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................AGGGTTGCGACTGGGCATCGCGC..................................................................................2311.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGTTC........................................................................................................................2611.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................AAGGGTTGCGACTGGGCATC......................................................................................2011.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
........................................................................................................................................ATTGTCCAAACGCAATTCTTGT..........................................................................................................................2211.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCTT............................................................................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
CCA----GTGGCTAAAA-GCTTTC-A--------A----------------------------------------------G------TGTCTAAATACAAACA--TATATTTGGTTAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTTTTAAATACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATCCAACACAA-AGCCAAA---------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................231999.0099993402628110
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................211488.004884351192751
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................221193.00193176041030
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................201110.001109707510
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................22168.00686800000
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCG...................................................................................22162.00629967301
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................19122.00221802200
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................20120.00202000000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGT..........................................................................................................................24112.0012312420
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGC....................................................................................2118.008013040
.......................................................................................................................................GATTGTCCAAACGCAATTCTT............................................................................................................................2118.008800000
........................................................................................................................................ATTGTCCAAACGCAATTCTTG...........................................................................................................................2117.007700000
......................................................................................................................................TGATTGTCCAAACGCAATTCC.............................................................................................................................2115.005000050
.........................................................................................................................................TTGTCCAAACGCAATTCTTG...........................................................................................................................2014.004400000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGC..........................................................................................................................2413.003100020
......................................................................................................................................TGATTGTCCAAACGCAATTCTTT...........................................................................................................................2313.003200100
........................................................................................................................................ATTGTCCAAACGCAATTCTT............................................................................................................................2013.003300000
.....................................................................................................................................ATGATTGTCCAAACGCAATTCTTG...........................................................................................................................2413.003300000
......................................................................................................................................TGATTGTCCAAACGCAATTT..............................................................................................................................2012.002200000
.......................................................................................................................................GATTGTCCAAACGCAATTC..............................................................................................................................1912.002200000
......................................................................................................................................TGATTGTCCAAACGCAATTCTG............................................................................................................................2212.002200000
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCGT..................................................................................2311.001000010
........................................................................................................................................ATTGTCCAAACGCAATTCTTGT..........................................................................................................................2211.001100000
............................................................................................................................................TCCAAACGCAATTCTTGT..........................................................................................................................1811.001000100
.....................................................................................................................................ATGATTGTCCAAACGCAATTCTT............................................................................................................................2311.001100000
..........................................................................................................................................TGTCCAAACGCAATTCTTG...........................................................................................................................1911.001100000
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCGC..................................................................................2311.001000010
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCG.....................................................................................2011.001000100
.......................................................................................................................................GATTGTCCAAACGCAATTCTTGG..........................................................................................................................2311.001100000
.......................................................................................................................................GATTGTCCAAACGCAATT...............................................................................................................................1811.001100000
...........................................................................................................................................GTCCAAACGCAATTCTTG...........................................................................................................................1811.001100000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGGCA........................................................................................................................2611.001100000
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGGG.........................................................................................................................2511.001100000
droGri2
CAG----CGCCTGAA-AGCTTTTT-GCCATGA--A----------------------------------------------C----------------TTAACA--AACATTTGGTGAATTCGATTTTTAGCTATGATTGTCCAAACGCAATTCTTGTTGATTT-CAAAAACTCAAGGGTTGCATCTGGGCATCGCGGCTCGAAATGAGAATACAACACAAAAATCAAAACAC-----------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
......................................................................................................................................TGATTGTCCAAACGCAATTCTTG...........................................................................................................................23193.0093930
......................................................................................................................................TGATTGTCCAAACGCAATTCT.............................................................................................................................21140.0040400
.......................................................................................................................................GATTGTCCAAACGCAATTCTTG...........................................................................................................................22110.0010100
......................................................................................................................................TGATTGTCCAAACGCAATTCTT............................................................................................................................2217.00770
......................................................................................................................................TGATTGTCCAAACGCAATTC..............................................................................................................................2016.00660
...............................................................................................................................................................................AGGGTTGCATCTGGGCATCGCG...................................................................................2213.00303
......................................................................................................................................TGATTGTCCAAACGCAATT...............................................................................................................................1912.00220
.......................................................................................................................................GATTGTCCAAACGCAATTCTA............................................................................................................................2111.00110
.......................................................................................................................................GATTGTCCAAACGCAATTC..............................................................................................................................1911.00110
.......................................................................................................................................GATTGTCCAAACGCAATTCTT............................................................................................................................2111.00110
......................................................................................................................................TGATTGTCCAAACGCAATTCTTGG..........................................................................................................................2411.00110
.......................................................................................................................................GATTGTCCAAACGCAATTCT.............................................................................................................................2011.00110

Generated: 10/20/2015 at 10:28 PM