ID:

dsi-mir-137

 Coordinate:

2r:12622838-12622947 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.9 -27.7 -27.6

Flybase annnotation

utr3 [utr3_minus_3253]

No Repeatable elements found

Sense Strand Reads

CCGTCTCCGATTACGGCCAGTGAAAGTGGCAGCTGCTCCAAGTGGATTACGATGGCGTCGCCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAAATCCAAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAAGCGAGGAAACCCGGTTAAATGAGCTGGAAAATGTTAGTGGCTAAAA

*************************************************************.((((((....(((.((((((((.((((.(((.(((((.((.....))...))))).))))))).)))))))).)))....))))))...*********************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023

head

 O002

Head

 M025

embryo

 GSM343915

embryo

 M024

male body		 SRR553487

NRT_0-2 hours eggs

 SRR553488

RT_0-2 hours eggs

 M053

female body

 SRR553486

Makindu_3 day-old ovaries

 O001

Testis

 SRR902009

testis

 SRR553485

Chicharo_3 day-old ovaries

 SRR618934

dsim w501 ovaries

 SRR902008

ovaries
..................................................................................................................TATTGCTTGAGAATACACGTAG.......................................................................... 22 0 1 1537.00 1537 479 460 113 240 47 52 56 50 3 16 15 2 3 1
..................................................................................................................TATTGCTTGAGAATACACG............................................................................. 19 0 1 1299.00 1299 896 101 206 0 93 0 1 0 0 2 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTA........................................................................... 21 0 1 218.00 218 32 76 0 9 3 52 28 1 4 3 0 7 3 0
............................................................................ACGTGTATGCTCGTAGCTATAAC............................................................................................................... 23 0 1 130.00 130 70 2 44 8 4 0 0 2 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACAC.............................................................................. 18 0 1 92.00 92 0 90 0 0 0 0 0 0 0 2 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAGT......................................................................... 23 0 1 57.00 57 6 25 4 9 0 7 4 0 0 1 0 1 0 0
..................................................................................................................TATTGCTTGAGAATACACGT............................................................................ 20 0 1 50.00 50 5 39 0 0 0 0 1 1 0 4 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTGG.......................................................................... 22 1 1 36.00 36 21 0 10 0 5 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAGA......................................................................... 23 1 1 33.00 33 0 0 0 2 2 20 7 1 0 0 1 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACGT............................................................................ 21 0 1 26.00 26 0 0 0 0 0 0 0 0 26 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGTAG.......................................................................... 21 0 1 22.00 22 0 17 0 0 0 1 0 3 0 0 1 0 0 0
............................................................................ACGTGTATGCTCGTAGCTATAACC.............................................................................................................. 24 0 1 17.00 17 0 16 0 0 0 0 0 0 0 1 0 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACGTA........................................................................... 22 0 1 12.00 12 0 0 0 1 0 2 2 0 7 0 0 0 0 0
............................................................................ACGTGTATGCTCGTAGCTATA................................................................................................................. 21 0 1 7.00 7 1 3 0 2 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAA.......................................................................... 22 1 1 7.00 7 5 0 0 1 0 0 0 0 0 0 0 0 1 0
............................................................................ACGTGTATGCTCGTAGCTAT.................................................................................................................. 20 0 1 6.00 6 0 6 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGGAG.......................................................................... 22 1 1 5.00 5 1 0 0 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAC.......................................................................... 22 1 1 5.00 5 4 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTTCTTGAGAATACACG............................................................................. 19 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACGT............................................................................ 19 0 1 3.00 3 0 2 0 0 0 0 0 0 0 1 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAGG......................................................................... 23 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATTGCTTGAGAATACACG............................................................................. 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACGTT........................................................................... 22 1 1 3.00 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACA............................................................................. 19 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACGTGTATGCTCGTAGCTATAACA.............................................................................................................. 24 1 1 2.00 2 0 0 0 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACG............................................................................. 20 0 1 2.00 2 0 0 1 0 0 0 0 0 1 0 0 0 0 0
............................................................................ACGTGTATGCTCGTAGCT.................................................................................................................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTCG.......................................................................... 22 1 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATTCACGTAG.......................................................................... 22 1 1 2.00 2 0 0 0 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATGCACGTAG.......................................................................... 22 1 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAT.......................................................................... 22 1 1 2.00 2 0 0 0 0 0 0 0 0 0 0 2 0 0 0
..................................................................................................................TATTCCTTGAGAATACACG............................................................................. 19 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACGTGTATGCTCGTAGCTA................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACATGTAG.......................................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACGCGTAG.......................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................CTATTGCTTGAGAATACACGTA........................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGCGG.......................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAGAAA....................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................CACGTGTATGCTCGTAGCT.................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACGA............................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................CACGTGTATGCTCGTAGCTATAAC............................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGGGAATAGACGTAG.......................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................AATTGCTTGAGAATACACGTAG.......................................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACA............................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................TGTTATTGCTTGAGAA................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.................................................................................................................TTATTGCTTGAGAATACGCGT............................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................TATTGATTGAGAATACACGTAG.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACATGG.......................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGG............................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATAAACG............................................................................. 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................TATCTTGAGAATACACGTAG.......................................................................... 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................ATATTGCTTGAGAATACACGTAG.......................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................................................................................TATTGCCTGAGAATACACG............................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAACACACG............................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACGCGGAG.......................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................ATTGATTGAGAATACACGTAG.......................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................ACGTGTAGGCTCGTAGCTATAAC............................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACGTGTATGCTCGTAGCTATAAG............................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCGTGAGAATACACGTAG.......................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGCATACACGTAG.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................ACGTATGCTCGTAGCTATAAC............................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGGATACACG............................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACGTTTATGCTCGTAGCTA................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATGCACG............................................................................. 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATATACG............................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
............................................................................ACGTGTATCCTCGTAGCTATAAC............................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTTCTTGAGAATACACGTAG.......................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATAC................................................................................ 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTCCTTGAGAATACACGTAG.......................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGGTTGAGAATACACGTAG.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTAGAA........................................................................ 24 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACGTTTT......................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATCCACG............................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAAAATACACGTAG.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACGTAA.......................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACGTACC......................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTACTTGAGAATACACG............................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACGTAGA......................................................................... 24 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................ATGTGTATGCTCGTAGCTATAAC............................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCATGAGAATACACG............................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAGTACACGTAG.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATAAACGTAG.......................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TTATTGCTTGAGAATACACT............................................................................. 20 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACGCG............................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TAGTGCGTGAGAATACACGTAGT......................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATATACGGAG.......................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................ACGTGTATGCTCGTAGCC.................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGCGAATACACGTA........................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGGTTGAGAATACACG............................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTACTTGACAATACACGTAG.......................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGATTACACGTAG.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................ACGTGTATGCTCGTAGC..................................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................ACGGGTATGCTCGTAGCTATAAC............................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGCATACACGGAG.......................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGTTTGAGATTTCACGTAG.......................................................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCCTGAGAATACACGTA........................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGGGAATACACG............................................................................. 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGGATACACGTA........................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTAAGAATACACGTAG.......................................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACCCG............................................................................. 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................GCTTGAGAATACACGTAG.......................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGATTACTCGTTG.......................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATA................................................................................. 15 0 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................GTAGGCTCGTAGCGATA................................................................................................................. 17 2 6 0.17 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................TATTGCTTGAGAATACACTAG........................................................................... 21 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................GGGAAACCCGGTTGGATGAG....................... 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGTAGGCTCGTAGCGGT.................................................................................................................. 17 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GGCAGAGGCTAATGCCGGTCACTTTCACCGTCGACGAGGTTCACCTAATGCTACCGCAGCGGTTAGAGGTTACCGGTGCACATACGAGCATCGATATTGGACTTTAGGTTTACAATAACGAACTCTTATGTGCATCAAGTGGCTCTAAACAAGTCGTTAGTTTTCGCTCCTTTGGGCCAATTTACTCGACCTTTTACAATCACCGATTTT

***********************************************************.((((((....(((.((((((((.((((.(((.(((((.((.....))...))))).))))))).)))))))).)))....))))))...************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025

embryo

 SRR618934

dsim w501 ovaries

 GSM343915

embryo

 SRR553488

RT_0-2 hours eggs

 M024

male body		 SRR553485

Chicharo_3 day-old ovaries
................................................................................................................CAATATCGATCTCGTATGTGCA............................................................................ 22 3 1 1.00 1 1 0 0 0 0 0
..............................................................................................................................................CTCAATACTAGTCGTTAGTTTT.............................................. 22 3 2 0.50 1 0 0 1 0 0 0
.....................................................CCGCAGGGGTTTCAGGTTAC......................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0
...........................................................................................................................................................................TAGGGCCAATTTTCTCGA..................... 18 2 4 0.25 1 0 0 0 1 0 0
...........................................................................................................................................................................TAGGGCCCATTTTCTCGA..................... 18 3 20 0.15 3 0 0 0 3 0 0
.........TAGTGCCGGTCACTT.......................................................................................................................................................................................... 15 1 7 0.14 1 0 1 0 0 0 0
...........................CCGTCGACGAGGGTCAC...................................................................................................................................................................... 17 1 9 0.11 1 0 1 0 0 0 0
.............................................................................................................................................................................GGGCCCATTTTCTCGA..................... 16 2 20 0.05 1 0 0 0 0 0 1
..........CATGGCCGTCACTTTCAC...................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0
.........................................................................................................AGGTTTACAATAAGG.......................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 2r:12622788-12622997 - dsi-mir-137 Known_mirbase CCGTCTC-----------CGATTACG-------GCC----AGTG--AAAGTGGCAGC--T--------------------------------------------------------------------------GCT-C-CAAGTGGATTACGATGGCGTCG-------------------C-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAA---GCG--A--------------------------GGA----AACCCGGTTAAATGAGCTGGA-AAA--TGTTAGTGGCTAAAA
droSec2 scaffold_1:9448830-9449038 - dse_23 confident CCGTCTC-----------CGATTACG-------GCC----AGTG--AAAGTGGCAGC--T--------------------------------------------------------------------------GCT-C-CAAGTGGATTACGATGGCGTCG-------------------C-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAA---GCG--A--------------------------GGA----A-CCCGGTTAAATGAGCTGGA-AAA--TGTTGGTGGCTAAAA
dm3 chr2R:11952702-11952928 - dme-mir-137 Known_mirbase CCGTCTC-----------GGATTACG-------GCC----AGTG--AAAGTGGCAGC--TGCC----------------------------------------AGT--------------T-GGCG-CTGTTGTGCT-C-CAAGTGGATTACGATGGCGTCG-------------------C-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATAAAAA---GAG----------------------------CGAAA-----CCCGTTTAAATGAGCTGGA-AAA--TGTTAGTGGCTAAAA
droEre2 scaffold_4845:13905005-13905231 + der_26 confident CCGTCTC-----------CGATGACG-------GCC----AGTG--AAAGTGGCAGC--TC-------------------------------------------------------------------------------CCAGTGGATTACGGTGGCGACT-------------------C-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAG---GGGCCACCGGC---AGCGAT-AAA---ACGGAGGA----A-ATCGGTTAAGTGAGCTGGGAAAA--CGGCAGTGGCCAGTA
droYak3 2R:17032161-17032391 + dya_26 confident T---CTC-----------CGATTACG-------GCC----AGTG--AAAGTGGCAGC--TTTAGCTCCCCAGTCATCTTCC----------------------AGT--------------T-------------------------AA-------------C-------------------C-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATTAAAA---AAGCCACTGAC---AGCTAT-AAA--AACCTAGGA----A-AACGGTTAAATGAGCTGCGAAAA-TTTGCAGTGACCAACA
droEug1 scf7180000409672:857271-857526 - A----TC-----------CGATTACCAAACGAAGTG----AGTG--AAAGTGCCAGA--TCTT----------------------------------------AGT--------------T-ATCC-CAGTTAACCG-C-CAAGTGGATTAAATGGTCGACG-------------------G-----------------------CAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAACCA--AGCCACTGAA---AGCTAT-AAAAAAACTGCAGTT-----ACTAGTTAATTTAACTGGA-AAAACAGGTAATACCATAAA
droBia1 scf7180000301506:2893801-2894063 - CCGTCTC-----------CGATTACCG------AGC----AGTG--AAAGTGCCGGG--TCTT----------------------------------------GGT--------------T-ATCG-CAGTTATGTG-C-CAAGTGGATTAAAGTGGCCAT------------------------CTCAAC------CGCAGC-CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAATTAAAA---CGGTCACCGAATGGGGCGAT-AAA--AACAGCAGTC-----ACCTCTTGGATTAACTGAA-AGA--AGCTAATCTTTAGAA
droTak1 scf7180000415795:609419-609678 + CCGTGTC-----------CGATTACC-------AGC----GGCG--AAAGTGCCAGA--TCTT----------------------------------------AGT--------------T-ATCC-CAGTTATGCG-G-CAAGTGGATCAACGTGGCGACG-------------------GCCA-----------------CCTCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAACGG--AGCCACAAAACGGGGCGAT-AAA--AACTGCAGTT-----ACAGTTTAAATTAACTGCG-AGAAAAGGTAATCGCAAAAG
droEle1 scf7180000491107:959929-960105 - A----TC-----------CGATTACC-------GCG----ACC---CAAGTGTGAAG--TCCCGA--------------------------------------AGT--------------C-C---TTACTCATGCCGCACAAGTGGATTAAAGTGGCGACG-------------------G-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAA-------------------------------------------------------------------------------------
droRho1 scf7180000779911:146842-147093 + A----TC-----------CGATTACC-------ACC----AGTGCAAAAGTGGCAGC--TCGT----------------------------------------GGT--------------T-ATCCTTACTTATGCG-C-CAAGTGGATTAAAGTGGCGACG-------------------G-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATGAAACGTACGGCCAGG------GGCCATTAAA--AAGTGCAGTAACTA-CACAGTGAAATGAACTGGA-ACA--AGGTAATCCTTTACA
droFic1 scf7180000453948:1198614-1198795 - A----TC-----------CGATTACC-------GCC----AGTG--AGAGTGCCAGG-ATCTC----------------------------------------GGT--------------T-ATCC-CGGCTATTCG-C-AGCGAGGATTACAGTGGCAGAA-------------------G-----------------------CTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAGC---GCG--A---------------------------------------------------------------------------
droKik1 scf7180000302476:2644183-2644348 - G--TGTC-----------GGATTGCG-------ACC----AGCG--AAAGTGCCAAGGATAT--CCA-----------------------------------------------------------CCATTTGTCCC-C-----CGGACTAT--------AA-------------------G-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAATCCAAA------------------------------------------------------------------------------------
droAna3 scaffold_13266:15447158-15447341 + dan_23 confident ACGTCCT-----GGTATCCGATTACC-------TCCTCGCTTCG--AAGGTGCGAGA--ACTT----------------------------------------G-------------------------GTTATGTG-G-CAAGTGGATTAAAGTGGCAAC-----------------------------------------CTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAA--ATGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAATCGAA-------------------------------------------------------------------------------------
droBip1 scf7180000396547:1600307-1600482 - CCTTG--------GTATCCGATTACC--------------TTGG--AAGGTGCGAGG--TGC----------------------------------------------------------------TTGGTTATGTG-C-CAAGTGGATTAAAGTGGCAAT-----------------------------------------CTGAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAT--GTGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATCGAAA---G--------------------------------------------------------------------------------
dp5 3:16385893-16386100 - dps-mir-137 Known_mirbase CCGG-TACGACA------CGGTCGTG--------GC----AATG--AAAGTGCGAGA--TTCTACGA-----------------------------------------------------------CTAGTTATGTC-C-AAAGTGGATTAAGATGACAGCGACGGCC-----AAGGCAAT----GCCGAC------GGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAA-------------------------------------------------------------------------------------
droPer2 scaffold_4:376864-377097 + dpe_44 confident CCGGCAC-GAAA------CGGTCGTG--------GC----AATG--AAAGTGCGAGA--TTCTACGA-----------------------------------------------------------CTAGTTACGTC-C-AAAGTGGATTAAGATGACAGCGACGGCCACGCCACGGCAAT----GCCGAC------GGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAAC------------------------------------------------------TGAAATGGA-AAG--TGTCTGTG-------
droWil2 scf2_1100000004954:1111004-1111093 - dwi_38 confident ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATGGCCACGTGTATTCTTATAGCTGTAACCTGTT--ATACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAAC--------------------------------------------------------------------------------------------
droVir3 scaffold_10468:1954-2054 - dvi-mir-137 Known_mirbase --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGATCCAA-------------------------------------------------------------------------------------
droMoj3 scaffold_6496:10609923-10610156 + dmo_25 confident GCGC-TG------GCATGCGAATCCCGAAC------------------GAGATTAAG--TT-----GCCCGTGCAGCTGCAGTCCCGCCGGAGCAGCAGCCGCAGCCGGAGCTGGCCGCTTGATT-ATATTTATG------AAGTGG-TCAA--------CG---------------GAGT----GTGGACACAATTGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACA-------------------------------------------------------------------------------------------
droGri2 scaffold_15245:16918490-16918681 - dgr_35 candidate-rescued CAGTGGA--------ATGTGAATACC--------------GTTG--AAGAGATTAAG--TTCCGATGCTGGTGCATCTGCT----------------------AAG--------------TGATT-TTATTTATGAAGC-AGAGGAGATT-----GGAAAA-----------------------------------------TTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGA------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCGTCTC-----------CGATTACG-------GCC----AGTG--AAAGTGGCAGC--T--------------------------------------------------------------------------GCT-C-CAAGTGGATTACGATGGCGTCG-------------------C-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAA---GCG--A--------------------------GGA----AACCCGGTTAAATGAGCTGGA-AAA--TGTTAGTGGCTAAAASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................2211537.0015374794711350164602352563240115000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................1911299.001299896932060210100010000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................211218.00218323013767452283900000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................................................................................................231130.001307044420200000800000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACAC....................................................................................................................18192.0092000029000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................23157.0057604012510740900000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................20150.0050500143900010000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................23133.0033020100002070201000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGT..................................................................................................................21126.0026000000026000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................21122.0022000301700100001000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACC.......................................................................................................................................................24117.0017000011600000000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA.................................................................................................................22112.001200000007220100000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATA..........................................................................................................................................................2117.00711000300000200000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................2217.00750000000001100000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTAT...........................................................................................................................................................2016.00600000600000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................2215.00540000000000100000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGT..................................................................................................................1913.00300001200000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG...............................................................................................................2313.00320100000000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACG...................................................................................................................1813.00330000000000000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTT.................................................................................................................2213.00300000003000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACA...................................................................................................................1913.00320100000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACA.......................................................................................................................................................2412.00200000000000101000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACG...................................................................................................................2012.00200100001000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCT.............................................................................................................................................................1812.00200000200000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................2212.00200000000000002000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTA............................................................................................................................................................1912.00200000200000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAAA.............................................................................................................2511.00100000000000001000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCT.............................................................................................................................................................1911.00101000000000000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGA..................................................................................................................2111.00100000001000000000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATAAC........................................................................................................................................................2411.00100000100000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACA.....................................................................................................................1711.00100000000010000000
..................................................................................................................................................................................................................................................................TGTTATTGCTTGAGAA.........................................................................................................................1611.00100000001000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGG..................................................................................................................2011.00110000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAG........................................................................................................................................................2311.00100000000000100000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATAC......................................................................................................................1611.00100000000010000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA..............................................................................................................2411.00110000000000000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAA................................................................................................................2311.00100000001000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTACC...............................................................................................................2311.00100000000000100000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAGA...............................................................................................................2411.00100000000100000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACT...................................................................................................................2011.00100000001000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCC.............................................................................................................................................................1811.00110000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGC..............................................................................................................................................................1711.00100000001000000000
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAG................................................................................................................1811.00100000100000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATA.......................................................................................................................1540.25100000000001000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACTAG.................................................................................................................2160.17100000000001000000
droSec2
CCGTCTC-----------CGATTACG-------GCC----AGTG--AAAGTGGCAGC--T--------------------------------------------------------------------------GCT-C-CAAGTGGATTACGATGGCGTCG-------------------C-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAA---GCG--A--------------------------GGA----A-CCCGGTTAAATGAGCTGGA-AAA--TGTTGGTGGCTAAAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................2216061.006061945110015412475
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................2111075.0010752622642781
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................201275.0027513788176
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................231211.0021116795264
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................231108.0010817272242
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................................................................................................23182.0082454429
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................21162.0062434510
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................20121.00215583
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC...............................................................................................................23119.00190298
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT..............................................................................................................24114.00141508
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................22112.00120507
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................22110.00102305
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................22110.00100226
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATA..........................................................................................................................................................2117.0070043
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................2215.0050320
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................1915.0051004
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTA............................................................................................................................................................1914.0041003
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTT.................................................................................................................2114.0040301
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA..............................................................................................................2414.0040022
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAG................................................................................................................1914.0041012
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG................................................................................................................2314.0042101
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTA.................................................................................................................2014.0043001
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT...............................................................................................................2113.0030021
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGT..................................................................................................................1913.0032001
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAG................................................................................................................1813.0032001
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAAA.............................................................................................................2512.0020110
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAT................................................................................................................2112.0021100
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGT..................................................................................................................2112.0020002
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTTT.............................................................................................................2512.0020011
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT..............................................................................................................2212.0021001
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACG...................................................................................................................1812.0020002
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................2311.0010010
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACA.......................................................................................................................................................2411.0011000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTA..............................................................................................................2411.0010010
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTAT...........................................................................................................................................................2011.0010001
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAAA...............................................................................................................2311.0010001
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCT.............................................................................................................................................................1811.0011000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAGT...............................................................................................................2411.0010100
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAC..............................................................................................................2411.0010010
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA.................................................................................................................2211.0010010
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATA..........................................................................................................................................................2211.0010001
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACAC....................................................................................................................1811.0010010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTTTT............................................................................................................2611.0010001
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACCTG.....................................................................................................................................................2611.0011000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTT............................................................................................................................................................1911.0010001
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG...............................................................................................................2311.0010100
...............................................................................................................................................................................................................................TGTATGCTCGTAGCTATA..........................................................................................................................................................1811.0010001
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACT...................................................................................................................1911.0010001
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................2211.0010010
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA...............................................................................................................2211.0011000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACTAG.................................................................................................................2150.6030003
dm3
CCGTCTC-----------GGATTACG-------GCC----AGTG--AAAGTGGCAGC--TGCC----------------------------------------AGT--------------T-GGCG-CTGTTGTGCT-C-CAAGTGGATTACGATGGCGTCG-------------------C-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAA--ATCC-AAATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATAAAAA---GAG----------------------------CGAAA-----CCCGTTTAAATGAGCTGGA-AAA--TGTTAGTGGCTAAAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................22147512.004751200002450001303004003500033403121448129614625400001110001210131310046036332700000000000000000122246100300232129434311942137121820396371120245853834602677027273906444175359954801698000020000031200231205820400000010004422532892017769329620105615771810622912724200210753251423300050057000000716000000300227884772717110625937200000005364020804622143042264292153178500936334012010612120619100103171272842415131012135113821413148539204156841019147822913989377593242617254223117441017875442824715796710269108257954353322160
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................2119825.00982500002000000100200200000200017710514320000000000010000000000011200000000000000000000020000000100702222900003110000010000021542319010949267666690000000000000000000050000000000000001902870145128816071137223432040000032073101000708000000020000000000143002100115000100002413014137250036120125221000844000031110201110133201220012250759161568215310765053020226213094170112501863612413087237013935939558203110
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................2012863.00286300000000000000100000010000000229271010000101000000000000003110000000000000000000001000000000000110000006000000010000001620102110131912000000000000000000000100000000100000315502910314223505016514000007202300004020000000100000000003901003200300000000340241210013480131900001138010010000000001101101001100177180177236022811127100174055136000020310100202056762449182725000010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................2311019.001019000000000000000000000001000000000000000000000010000100120134200000000000000000000000000000000002001000017000000100010006101010301065000000000000000010005000000000000000181101200516014020016000000221211000104000000010000001001120000001000103000015120110020038011700003260101000000100002000001000113629343256284020100301394901043115201122030301672310252124100220
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................................................................................................231689.00689000000001300000000000000000000000000000000000100000000000010000000000000000000000005000001030141302003200010001303000300200160100100000000000000000000000000000000000026500260022101003206500000013001000000100000000000000000000010011100200000001916013030069034000030000000100100000000000000200182421330964111010012057020002300101001024411300000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................221470.004700000410002010000000000000000000000000000000000000000000000000000000000000000000030000000001901701010037100000010010005000011201109800000000000000000000000000000000000026390210011381160250280000002200100000000000000000000000000100001000000001000000020000150100000210000000110000000000000000001912211700221000006059000000000000000021610301000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................231389.0038900001000000000000000000001000000000000000000000000000000000000000000000000000000200000000001001110000000000000100000320002120213700000000000000000000000000000000000011110900712170250240000001300000000000000000000000000000100003000200004300110230000630220000440000000001100000000000000002017211409126000000120614000010010001101014143323010000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................211389.00389000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000010000010000000000000006002033301002000000000000000000000000000000000000395402601434220024103500000018000000000000000000000000000000100000000000000003302000000200400000700000000000000000000000000079410010101100003034010000100000000011510220000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................221334.00334000010000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000004000000000000017000000101201412000000000000000000000000000000000000121607003403050900000070100000001000000000000000000012000010002001000030001010046122000031300000000000000000000000000015171690111202000080210000000110011000074740724000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTATC............................................................................................................261110.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006149000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................22176.007600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000202500000000000000000000000000000000000010100400000201000000002100000000000000000000000000100000000000000010000000100001100100000300000000000000010000000000032320200010000302001000110000000000310010000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................19162.0062000000000000000000000001000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000001130000000000000000000000000000000000000040200021011102000002000000030100000000000000000000000000000000000001000201000000100000000000010100100000000000000015220000000000010200000000000000000710003000100
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................20159.0059000000000000000000600000000010000000000000000000000000000000000000000000000000000000000000000001210000000000000000000000000000000000000000000000000000000000000000000340200380712100000001100000000000000000000000000002000000000000000005000000000000000000000000000000000000000000000011020100000000001100000000000000000100000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTC.................................................................................................................21153.0053000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000004028000000000000000000000000000000000000220000010000010000000000000000000000000000000000000000000000000000000000400000100000001000000000000000000000000000001010010000000901400000000000000000200010000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATA..........................................................................................................................................................21150.0050000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000400010100000000000000000000000000000000000000000330000210002020000003000000000000000000000000000000000000000000000000100001000501400002000000000000000000000000000006110200000000000100000000000000000100100000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTAT...........................................................................................................................................................20146.0046000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000000000680200000405060000001000000000000000000000000000001000000000000000000100100000000000000000000000000000000000000000014010000000000000100000000000000000100000000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG................................................................................................................23138.0038000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000006000000000000001000000000200000000000000000000000000000000000000230200200100000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000001330200000000300000000000000000001210000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................22138.0038000010000100000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000230000010001013000000000000000000000000000000000000000000000000000001501100000000000000100000000000000000000010000021030100010000101000000000000000000310000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC...............................................................................................................23136.0036000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000130000000000040000000000000000100000000000000000000000000000000000001000100000001000002100000000000000000000000000043010401000000201000000000000000000210001000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTT.................................................................................................................21131.0031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000210000000000020000000000000000000000000000000000000000000000000000000001000000500200000000000000000000000000000000001020000000000100100000000000000000810111000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGT..................................................................................................................21131.00310000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000003000000000000000000010000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000021200001000000001200000000000000000110000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................22126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000420100020100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000000100000000000000000000200111000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGG..................................................................................................................20124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000002040000004000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000021400000000000100100000000000000000100000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTA.................................................................................................................20124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000001000000000000000000000000000000000000000140200110002020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001310000000000000000000000010000000100000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGT..................................................................................................................19119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000100010101040000001000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000110000010000000000000000000000000200020000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAAA...............................................................................................................23118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000320300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000032100010000000000000000000000000000200000000000
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAG................................................................................................................18118.0018000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000500000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000001300000000000000000000000000000000000000000000001010110000000001000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT..............................................................................................................24117.0017000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000400000000000000000000000000001100000000000000201000000000000000301000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTCT................................................................................................................22115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000002032000000000000000000000000000000000000200100000000010000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAC..............................................................................................................24115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000114000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG...............................................................................................................23114.0014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001011000002000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010100000000000002000000000000000000020001000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACAC....................................................................................................................18113.0013000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000100400000000000000000000000000000000000000000102000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA..............................................................................................................24111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000010000100000000000000000000000000000210000001000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCT.............................................................................................................................................................19111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010100000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011010000000000000000000000000000000300000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGC..................................................................................................................20110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000001000000000000000000000000000000000000000000000000000000000000100000001100000000000000000000000000000000000010000000000200100000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTG.................................................................................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000100000000000000000200000000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA.................................................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000200100000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTA............................................................................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000001110000000000000000000000000000000100000000000
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAG................................................................................................................1918.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000200000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000010000000000000100100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT..............................................................................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000100000000000000000000200100000000
droEre2
CCGTCTC-----------CGATGACG-------GCC----AGTG--AAAGTGGCAGC--TC-------------------------------------------------------------------------------CCAGTGGATTACGGTGGCGACT-------------------C-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAAG---GGGCCACCGGC---AGCGAT-AAA---ACGGAGGA----A-ATCGGTTAAGTGAGCTGGGAAAA--CGGCAGTGGCCAGTASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................2217446.007446966446598252105741270
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................2111221.00122131511321489220
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................201301.00301121341482050
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................................................................................................231128.001284257184700
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................231102.00102918622560
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................21192.00924625111270
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................23181.00817612014420
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................22160.0060006103410
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................22131.003140504180
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATA..........................................................................................................................................................21120.002000061130
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................22118.00180720180
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC...............................................................................................................23117.00171222190
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................20117.001751000110
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG................................................................................................................23112.00121010280
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................1918.0080120230
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTAT...........................................................................................................................................................2017.0070010150
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTA............................................................................................................................................................1917.0071000060
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................2216.0061102020
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTG.................................................................................................................2115.0051000040
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAG................................................................................................................1915.0051000220
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA.................................................................................................................2214.0041010110
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAG................................................................................................................1814.0040000040
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTA.................................................................................................................2014.0042000020
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA..............................................................................................................2413.0030010020
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................2213.0030011100
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG...............................................................................................................2313.0030001110
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTT.................................................................................................................2113.0030100200
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACG...................................................................................................................2013.0030000030
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA...............................................................................................................2212.0022000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGT..................................................................................................................2112.0020000110
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTC.................................................................................................................2112.0020010010
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAA........................................................................................................................................................2312.0020010010
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCT.............................................................................................................................................................1812.0020000020
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGT..................................................................................................................1912.0020000020
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................2312.0021000100
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAA................................................................................................................1911.0010000100
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTCT.............................................................................................................2311.0010000010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAAA...............................................................................................................2311.0010000010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACTAG.................................................................................................................2141.0043000010
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATA..........................................................................................................................................................2211.0010000010
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGC...............................................................................................................2211.0010000010
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGT..................................................................................................................1811.0010000010
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAT........................................................................................................................................................2311.0010000010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACTA..................................................................................................................2011.0010000010
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAA................................................................................................................2311.0010010000
.............................................................................................................................................................................................................................................................C--AATGTTATTGCTTGAGAATACACG...................................................................................................................2511.0010010000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT..............................................................................................................2411.0010000010
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGTC..............................................................................................................2311.0011000000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT...............................................................................................................2111.0010000100
droYak3
T---CTC-----------CGATTACG-------GCC----AGTG--AAAGTGGCAGC--TTTAGCTCCCCAGTCATCTTCC----------------------AGT--------------T-------------------------AA-------------C-------------------C-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAC--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATTAAAA---AAGCCACTGAC---AGCTAT-AAA--AACCTAGGA----A-AACGGTTAAATGAGCTGCGAAAA-TTTGCAGTGACCAACASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................2213476.003476987668151583458514421000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................211412.004124358667218740000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................191194.001941921100000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................201121.00121114901852270000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................................................................................................23196.009615455171400000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................23169.006914195819130000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................21144.0044029802410000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................22121.0021010051410000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................23121.002106233700000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................22120.0020101300420000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................22115.001523103510000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG................................................................................................................2318.00801401200000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTAT...........................................................................................................................................................2018.00800003500000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................2018.00802101130000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC...............................................................................................................2317.00700202300000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATA..........................................................................................................................................................2116.00603120000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGT..................................................................................................................2115.00500001400000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTT.................................................................................................................2115.00500000410000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................2214.00411010100000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTC.................................................................................................................2113.00300000300000
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAG................................................................................................................1812.00201100000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTA.................................................................................................................2012.00201001000000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT...............................................................................................................2112.00201100000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTCT................................................................................................................2211.00100000100000
..................................................................................................................................................................................................................................................CCTGAC--ATCC--AATGTTATTGCT...............................................................................................................................2211.00110000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACTC..................................................................................................................2011.00100001000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACA.......................................................................................................................................................2411.00100100000000
...............................................................................................................................................................................................................................TGTATGCTCGTAGCTATAAC........................................................................................................................................................2011.00110000000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA.................................................................................................................2211.00100010000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................2211.00100001000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACAC....................................................................................................................1811.00110000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAAA...............................................................................................................2311.00100000010000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTA............................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAG................................................................................................................1911.00100000010000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGT..................................................................................................................1911.00101000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACTAG.................................................................................................................2130.33100000010000
droEug1
A----TC-----------CGATTACCAAACGAAGTG----AGTG--AAAGTGCCAGA--TCTT----------------------------------------AGT--------------T-ATCC-CAGTTAACCG-C-CAAGTGGATTAAATGGTCGACG-------------------G-----------------------CAATCTCCAATGGCCACGTGTATACTCGTAGCGATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAACCA--AGCCACTGAA---AGCTAT-AAAAAAACTGCAGTT-----ACTAGTTAATTTAACTGGA-AAAACAGGTAATACCATAAASizeHit CountTotal NormTotal
No Reads
droBia1
CCGTCTC-----------CGATTACCG------AGC----AGTG--AAAGTGCCGGG--TCTT----------------------------------------GGT--------------T-ATCG-CAGTTATGTG-C-CAAGTGGATTAAAGTGGCCAT------------------------CTCAAC------CGCAGC-CCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCCACGAGATTTGCCCAGCAATTAAAA---CGGTCACCGAATGGGGCGAT-AAA--AACAGCAGTC-----ACCTCTTGGATTAACTGAA-AGA--AGCTAATCTTTAGAASizeHit CountTotal NormTotal
No Reads
droTak1
CCGTGTC-----------CGATTACC-------AGC----GGCG--AAAGTGCCAGA--TCTT----------------------------------------AGT--------------T-ATCC-CAGTTATGCG-G-CAAGTGGATCAACGTGGCGACG-------------------GCCA-----------------CCTCAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--GATGTTATTGCTTGAGAATACACGTAGTTCACCGAGATTTGTTCAGCAATCAAACGG--AGCCACAAAACGGGGCGAT-AAA--AACTGCAGTT-----ACAGTTTAAATTAACTGCG-AGAAAAGGTAATCGCAAAAGSizeHit CountTotal NormTotal
No Reads
droEle1
A----TC-----------CGATTACC-------GCG----ACC---CAAGTGTGAAG--TCCCGA--------------------------------------AGT--------------C-C---TTACTCATGCCGCACAAGTGGATTAAAGTGGCGACG-------------------G-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
A----TC-----------CGATTACC-------ACC----AGTGCAAAAGTGGCAGC--TCGT----------------------------------------GGT--------------T-ATCCTTACTTATGCG-C-CAAGTGGATTAAAGTGGCGACG-------------------G-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATGAAACGTACGGCCAGG------GGCCATTAAA--AAGTGCAGTAACTA-CACAGTGAAATGAACTGGA-ACA--AGGTAATCCTTTACASizeHit CountTotal NormTotal
No Reads
droFic1
A----TC-----------CGATTACC-------GCC----AGTG--AGAGTGCCAGG-ATCTC----------------------------------------GGT--------------T-ATCC-CGGCTATTCG-C-AGCGAGGATTACAGTGGCAGAA-------------------G-----------------------CTATCTCCAATGGCCACGTGTATGCTCGTAGCTATAGCCTGAT--ATCC--AATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTTGTTCAGCAATCAAGC---GCG--A---------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
G--TGTC-----------GGATTGCG-------ACC----AGCG--AAAGTGCCAAGGATAT--CCA-----------------------------------------------------------CCATTTGTCCC-C-----CGGACTAT--------AA-------------------G-----------------------CAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACCTGAT--ATCCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGCGAGATTCGTTCATCAATCCAAA------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ACGTCCT-----GGTATCCGATTACC-------TCCTCGCTTCG--AAGGTGCGAGA--ACTT----------------------------------------G-------------------------GTTATGTG-G-CAAGTGGATTAAAGTGGCAAC-----------------------------------------CTGGAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAA--ATGCGAAATGTTATTGCTTGAGAATACACGTAGTTCAGAGAGATTTGTTCAGCAATCGAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................2213316.003316386452406375121289
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................211436.00436810211785214
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................201198.00198430635078
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................231123.001233163183845
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................................................................................................23180.008032724242
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................21173.0073236014624
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................22142.004210171023
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................23131.00316119212
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGT..................................................................................................................19113.0013200227
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTT.................................................................................................................21111.0011000218
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................1919.009020322
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC...............................................................................................................2318.008040310
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGT..................................................................................................................2118.008000332
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG................................................................................................................2318.008220103
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................2218.008100214
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATA..........................................................................................................................................................2116.006011103
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................2215.005030101
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................2215.005100004
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA.................................................................................................................2215.005000014
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT..............................................................................................................2214.004001003
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT..............................................................................................................2414.004000220
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................2014.004220000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTA.................................................................................................................2013.003000012
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACAC....................................................................................................................1813.003010200
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG...............................................................................................................2313.003100200
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACG...................................................................................................................1812.002000200
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTC.................................................................................................................2112.002000020
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTTT................................................................................................................2212.002000110
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAG................................................................................................................1912.002100010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGC..................................................................................................................2012.002000200
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTTA................................................................................................................2211.001100000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAT........................................................................................................................................................2311.001000100
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTG.................................................................................................................2111.001000001
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAT................................................................................................................2111.001000001
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA...............................................................................................................2211.001000100
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA..............................................................................................................2411.001000010
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAG................................................................................................................1811.001010000
.............................................................................................................................................................................................................................CGTGTATGCTCGTAGCTATA..........................................................................................................................................................2011.001100000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACT.......................................................................................................................................................2411.001000100
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................2211.001010000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGCTT................................................................................................................2211.001000100
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGG..................................................................................................................2011.001000100
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGC...............................................................................................................2211.001010000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTTC................................................................................................................2211.001000100
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAA................................................................................................................2311.001010000
droBip1
CCTTG--------GTATCCGATTACC--------------TTGG--AAGGTGCGAGG--TGC----------------------------------------------------------------TTGGTTATGTG-C-CAAGTGGATTAAAGTGGCAAT-----------------------------------------CTGAAATCTCCAATGGCCACGTGTATGCTCGTAGCTATAACGTGAT--GTGC-GAATGTTATTGCTTGAGAATACACGTAGTTCAGTGAGATTTGTTCAGCAATCGAAA---G--------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCGG-TACGACA------CGGTCGTG--------GC----AATG--AAAGTGCGAGA--TTCTACGA-----------------------------------------------------------CTAGTTATGTC-C-AAAGTGGATTAAGATGACAGCGACGGCC-----AAGGCAAT----GCCGAC------GGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................2214840.0048401157882635343776734074527
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................211267.0026704811211412547001
............................................................................................................................................................................................................................ACGTGTATACTCATAGCTATAAC........................................................................................................................................................231204.002040796148250000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................211111.00111082105252005
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................20191.0091092716012000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................23177.0077013149111614000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................22160.00600171745141002
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTA.................................................................................................................20142.0042017050146000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................22132.003202245010000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................23123.00230327220007
...........................................................................................................................................................................................................................CACGTGTATACTCATAGCTATAA.........................................................................................................................................................23116.00160201823000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG................................................................................................................23113.00130531000004
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................20111.00110331021001
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGT..................................................................................................................19110.00100101071000
............................................................................................................................................................................................................................ACGTGTATACTCATAGCTATA..........................................................................................................................................................21110.00100111320020
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC...............................................................................................................2319.0090032220000
...........................................................................................................................................................................................................................CACGTGTATACTCATAGCTATA..........................................................................................................................................................2219.0090212400000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGC...............................................................................................................2217.0070061000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................1917.0071120030000
............................................................................................................................................................................................................................ACGTGTATACTCATAGCTATAA.........................................................................................................................................................2217.0070200410000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................2216.0060100032000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................2215.0050310100000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT...............................................................................................................2114.0040300010000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT..............................................................................................................2214.0040000112000
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAG................................................................................................................1814.0040300100000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA...............................................................................................................2213.0030300000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGT..................................................................................................................2113.0030001020000
...........................................................................................................................................................................................................................CACGTGTATACTCATAGCTATAAC........................................................................................................................................................2413.0030021000000
...........................................................................................................................................................................................................................CACGTGTATACTCATAGCTAT...........................................................................................................................................................2112.0020200000000
............................................................................................................................................................................................................................ACGTGTATACTCATAGCTATAACA.......................................................................................................................................................2412.0020020000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTT.................................................................................................................2112.0020000002000
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAG................................................................................................................1912.0020101000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT..............................................................................................................2412.0020000002000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACG...................................................................................................................1811.0010100000000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGC...............................................................................................................2111.0010001000000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTA.................................................................................................................1911.0010100000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGTA..............................................................................................................2311.0010000001000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTACA...............................................................................................................2311.0010000010000
............................................................................................................................................................................................................................ACGTGTATACTCATAGCTAT...........................................................................................................................................................2011.0010000010000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTA..............................................................................................................2211.0010000010000
............................................................................................................................................................................................................................ACGTGTATACTCATAGCTA............................................................................................................................................................1911.0010000100000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAA................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGTT..............................................................................................................2311.0010000010000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGCT.................................................................................................................2111.0010000010000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTT.................................................................................................................2011.0010000001000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGC..................................................................................................................2011.0010001000000
..................................................................................................................................................................................................................................................................TGTTATTGCTTGAGAATACACGTAG................................................................................................................2511.0010100000000
droPer2
CCGGCAC-GAAA------CGGTCGTG--------GC----AATG--AAAGTGCGAGA--TTCTACGA-----------------------------------------------------------CTAGTTACGTC-C-AAAGTGGATTAAGATGACAGCGACGGCCACGCCACGGCAAT----GCCGAC------GGCGACTAGAATCTTCAACGGCCACGTGTATACTCATAGCTATAACCTGAT--ATCC-GAATGTTATTGCTTGAGAATACACGTAGTTTAACAAGATTCGTTCAGCAATCAAAC------------------------------------------------------TGAAATGGA-AAG--TGTCTGTG-------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................2212043.0020432422089638770302
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................211375.0037505214720120
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................201163.0016302264887
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................19166.00666200130
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................23153.0053001192211
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTA.................................................................................................................20136.003600016182
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................22121.00210401250
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGT..................................................................................................................19120.00200007130
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................21120.0020071480
...........................................................................................................................................................................................................................CACGTGTATACTCATAGCTATAA.........................................................................................................................................................23116.0016301570
............................................................................................................................................................................................................................ACGTGTATACTCATAGCTATAAC........................................................................................................................................................23116.0016905200
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................23114.0014020651
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................2218.008000530
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................2218.008010160
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG................................................................................................................2318.008000071
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................2217.007001420
...........................................................................................................................................................................................................................CACGTGTATACTCATAGCTAT...........................................................................................................................................................2116.006000240
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC...............................................................................................................2315.005011120
...........................................................................................................................................................................................................................CACGTGTATACTCATAGCTATA..........................................................................................................................................................2214.004002110
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................2014.004011020
...........................................................................................................................................................................................................................CACGTGTATACTCATAGCT.............................................................................................................................................................1913.003000030
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTT.................................................................................................................2013.003000030
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT..............................................................................................................2213.003000300
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAG................................................................................................................1912.002010001
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGTT..............................................................................................................2312.002000020
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACG...................................................................................................................1812.002000200
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTGT................................................................................................................2212.002000020
............................................................................................................................................................................................................................ACGTGTATACTCATAGCTATAA.........................................................................................................................................................2212.002010100
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGT..................................................................................................................2112.002000110
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT...............................................................................................................2112.002000020
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTT.................................................................................................................2111.001000010
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGG...............................................................................................................2211.001000010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTTA................................................................................................................2211.001000010
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGCC.................................................................................................................2011.001000010
............................................................................................................................................................................................................................ACGTGTATACTCATAGCTATA..........................................................................................................................................................2111.001100000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT..............................................................................................................2411.001000010
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGAA..............................................................................................................2211.001000010
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGA...............................................................................................................2111.001000010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTG.................................................................................................................2111.001000100
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAA................................................................................................................2111.001000100
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTTT................................................................................................................2211.001000010
...........................................................................................................................................................................................................................CACGTGTATACTCATAGCTATAAT........................................................................................................................................................2411.001000010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTC.................................................................................................................2111.001000010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTATC...............................................................................................................2311.001000010
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACG...................................................................................................................2011.001000010
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGT..................................................................................................................1811.001010000
............................................................................................................................................................................................................................ACGTGTATACTCATAGCT.............................................................................................................................................................1811.001100000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGGGA.............................................................................................................2511.001010000
............................................................................................................................................................................................................................ACGTGTATACTCATAGCTAT...........................................................................................................................................................2011.001000100
droWil2
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTAATGGCCACGTGTATTCTTATAGCTGTAACCTGTT--ATACAAAATGTTATTGCTTGAGAATACACGTAGTTA-ACTAGATTCGTTCAAC--------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................2214067.00406713843017814041917
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................211375.003751222368261
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................191306.003063020004
............................................................................................................................................................................................................................ACGTGTATTCTTATAGCTGTAAC........................................................................................................................................................231135.001359911286
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................201109.0010921416572
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................23149.0049125329
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................21132.0032024017
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................23119.001912484
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG................................................................................................................23115.0015020211
............................................................................................................................................................................................................................ACGTGTATTCTTATAGCTGTA..........................................................................................................................................................21114.0014120011
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................22112.001212009
............................................................................................................................................................................................................................ACGTGTATTCTTATAGCTGTAA.........................................................................................................................................................2219.00970011
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................2217.00701123
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................2016.00602004
............................................................................................................................................................................................................................ACGTGTATTCTTATAGCTGT...........................................................................................................................................................2015.00550000
............................................................................................................................................................................................................................ACGTGTATTCTTATAGCTG............................................................................................................................................................1914.00440000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTG.................................................................................................................2114.00400103
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA.................................................................................................................2214.00400013
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTT..............................................................................................................2213.00300003
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACG...................................................................................................................2013.00330000
............................................................................................................................................................................................................................ACGTGTATTCTTATAGCTGTAACC.......................................................................................................................................................2413.00330000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGTTT-............................................................................................................2312.00200011
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAG................................................................................................................1912.00200011
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGG..................................................................................................................2012.00220000
...........................................................................................................................................................................................................................CACGTGTATTCTTATAGCTGTAA.........................................................................................................................................................2312.00220000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................2212.00200011
......................................................................................................................................................................................................................................TTATAGCTGTAACCTGTT--AT...............................................................................................................................................2011.00110000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTA.................................................................................................................2011.00100010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTC.................................................................................................................2111.00100010
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT...............................................................................................................2111.00101000
............................................................................................................................................................................................................................ACGTGTATTCTTATAGCTGTAACCT......................................................................................................................................................2511.00110000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACAC....................................................................................................................1811.00100010
............................................................................................................................................................................................................................ACGTGTATTCTTATAGCTGC...........................................................................................................................................................2011.00110000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA..............................................................................................................2411.00100010
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA...............................................................................................................2211.00101000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTT.................................................................................................................2111.00100001
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC...............................................................................................................2311.00100001
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGT..................................................................................................................2111.00100001
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTGT................................................................................................................2211.00100001
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAG................................................................................................................1811.00100010
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAGG...............................................................................................................2011.00101000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTCC................................................................................................................2211.00100010
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................2211.00100010
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTA.................................................................................................................1911.00100001
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACTAG.................................................................................................................2150.20100001
droVir3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTCTCTCAACGATCCAA-------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................2213284.003284357652179112103000017812354134916212601406305235342041060001020133000000000100211552118601353020201680152170418143863
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................211867.0086702436010000000069402750522704737000002304020001020100000000000000001113548300200000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................201414.004140323003000000002616192033182342011000041000000000000000000000000011001632300000002000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................191126.00126387100000010000010000001000000010000000000000000000000000019051000000014010000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................................................................................................23182.00823171130000000000603332011000001000000000000000000000000000006515100000000000010000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................21179.0079005540000000000211210000000001000000000000000000000000000000111000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................23147.0047004400000000002101330220000001000100000000000000000000000001111100000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................22136.00360000000000000043314303400000001100000000000000000000000000009000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................23133.00330225000000000022021000100000020000000000000000000000000000202100000000000002034
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................22120.00200000010000000021021210000000100000000000000000000000000000015300000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATG.......................................................................................................................................38116.00160000000000000000000000000000000000000000000000000000000403900000000000000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................22114.00140011000000000010011000100000100100000000000000000000000000005100000000000000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG................................................................................................................23112.00120020000000000031001101100000000000000000000000000000000000002000000000000000000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................23110.00100001000000000032010000200000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTA.................................................................................................................20110.00100060000000000000010100000000000000000000000000000000000000001100000000000000000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCT.............................................................................................................................................................19110.00100200000000000000112000000000000000000000000000000000000000004000000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATA..........................................................................................................................................................2119.0090001000000000001001021200000000100000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................2218.0080001000000000000011000000000000000000000000000000000000000005000000000000000000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTAT...........................................................................................................................................................2117.0070010000000000002001001000000000000000000000000000000000000002000000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................2216.0060000000000000010012000000000000100000000000000000000000000001000000000000000000
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAG................................................................................................................1815.0050021000000000010000000010000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTT.................................................................................................................2115.0050000000000000000100000000000000000000000000000000000000000003100000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGC..................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000005000000000000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGT..................................................................................................................1914.0040020000000000000000000000000000000000000000000000000000000002000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC...............................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000013000000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTAT...........................................................................................................................................................2014.0040010000000000010000000000000000000000000000000000000000000002000000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACCTGTACAATCA--AATGT......................................................................................................................................3913.0030000000000000000000000000000000000000000000000000000010000200000000000000000000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................2013.0030010000000000000000000100000000000000000000000000000000000000100000000000000000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATAAA........................................................................................................................................................2413.0030100000000000011000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATA..........................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000002000000001000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTC.................................................................................................................2113.0030000000000000000101000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAG................................................................................................................1912.0020001000000000000100000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTA............................................................................................................................................................1912.0020000000000000000000000000000010000000000000000000000000000001000000000000000000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGT..................................................................................................................1812.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGT..................................................................................................................2112.0020000000000000010010000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCC.............................................................................................................................................................1912.0021100000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAACC.......................................................................................................................................................2412.0020000000000000000000000000000200000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG...............................................................................................................2312.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTA..............................................................................................................2411.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATC..........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATC..........................................................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGG..................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCT.............................................................................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGTTT-T...........................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACC...................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGA...............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000001
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTA............................................................................................................................................................2011.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATAC.........................................................................................................................................................2311.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGC...............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTCCC...............................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTCA................................................................................................................2211.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTA.................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTA.................................................................................................................1811.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGCCC................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTT.................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATAAAAA......................................................................................................................................................2611.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGA..................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATT..........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGAA..............................................................................................................2411.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAGT...............................................................................................................2111.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAGTAT-T...........................................................................................................2230.3310000000000000010000000000000000000000000000000000000000000000000000000000000000
droMoj3
GCGC-TG------GCATGCGAATCCCGAAC------------------GAGATTAAG--TT-----GCCCGTGCAGCTGCAGTCCCGCCGGAGCAGCAGCCGCAGCCGGAGCTGGCCGCTTGATT-ATATTTATG------AAGTGG-TCAA--------CG---------------GAGT----GTGGACACAATTGGAAATTGGAATCGGCAATGGCCACGTGTATGCTCGTAGCTATAACTGGTACAATCA--AATGTTATTGCTTGAGAATACACGTAGTT-AGCCAGATTCGCCCAACA-------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................2218045.008045231813480016542187952
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................211796.0079670018937818141
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................201399.0039942086192970
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................................................................................................231223.0022352012201633
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................211207.002071390710492
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................231153.0015315421284837
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAT................................................................................................................22146.004660111838
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................23145.0045111410712
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................20132.00321800293
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAC................................................................................................................22129.00290022241
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGC...............................................................................................................23118.00181012140
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATA..........................................................................................................................................................21115.00150302100
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACG...................................................................................................................19113.0013004621
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTT.................................................................................................................21112.0012202503
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAA................................................................................................................2219.009202410
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTT-.............................................................................................................2418.008210113
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTA.................................................................................................................2018.008700100
........................................................................................................................................................................................................................................................................TGCTTGAGAATACACGTAG................................................................................................................1917.007500110
....................................................................................................................................................................................................................................................................TTATTGCTTGAGAATACACGTAG................................................................................................................2315.005400100
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGT..................................................................................................................1915.005202001
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................2215.005200120
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................2214.004011200
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAG................................................................................................................1813.003100020
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGC..................................................................................................................2012.002000110
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGG...............................................................................................................2312.002100010
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAT................................................................................................................2112.002000020
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTAT...........................................................................................................................................................2012.002001100
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTG.................................................................................................................2112.002000101
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGTC-.............................................................................................................2411.001000001
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTATA...............................................................................................................2311.001000001
.........................................................................................................................................................................................................................................................................GCTTGAGAATACACGTAGT...............................................................................................................1911.001100000
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGT..................................................................................................................1811.001000010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTCT................................................................................................................2211.001000100
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATAA.........................................................................................................................................................2311.001100000
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTC.................................................................................................................2111.001000100
...........................................................................................................................................................................................................................CACGTGTATGCTCGTAGCTATA..........................................................................................................................................................2211.001000010
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAAA...............................................................................................................2311.001000001
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTCA................................................................................................................2211.001001000
droGri2
CAGTGGA--------ATGTGAATACC--------------GTTG--AAGAGATTAAG--TTCCGATGCTGGTGCATCTGCT----------------------AAG--------------TGATT-TTATTTATGAAGC-AGAGGAGATT-----GGAAAA-----------------------------------------TTAAAATCTGAAATGGCCACGTGTATGCTCGTAGCTATAACCTGAACAATCA--AATGTTATTGCTTGAGAATACACGTAGTTA-ACAAGATTGCCTCAACGA------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAG................................................................................................................221175.0017512946
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTA.................................................................................................................21118.0018612
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGT..................................................................................................................20112.001266
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAG................................................................................................................2118.00880
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGT...............................................................................................................2313.00321
.......................................................................................................................................................................................................................................................................TTGCTTGAGAATACACGTAG................................................................................................................2013.00330
.....................................................................................................................................................................................................................................................................TATTGCTTGAGAATACACGTAGA...............................................................................................................2312.00211
.............................................................................................................................................................................................................................CGTGTATGCTCGTAGCTATAAC........................................................................................................................................................2211.00110
......................................................................................................................................................................................................................................................................ATTGCTTGAGAATACACGTAGT...............................................................................................................2211.00110
............................................................................................................................................................................................................................ACGTGTATGCTCGTAGCTATAAC........................................................................................................................................................2311.00110

Generated: 10/20/2015 at 10:24 PM