ID:

dsi-mir-1001

 Coordinate:

3r:22893204-22893321 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-46.4 -45.9 -45.9

Flybase annnotation

intron [3r_22892312_22894558_-]

No Repeatable elements found

Sense Strand Reads

CATACATACCTACATATACATACATATGTTTATGCATTCTTCGAGGGTTAGCCCGCGATGATGTAAGCTGGCCTGTCCCTGGGTAAACTCCCAAGGATCAGGTGGAGATTGAATCCCGATCCTTGGGTTTCTGCTCTCGGGCAAGGTCAGCAGTGCCCGCGAAGGGCCCAGCTGTTTGTTAACTCCTTTAGTACCTAGCGAATGTCCTTTAACAAAGT

****************************************************************..((((((((((((..(((((....((((((((((.((............)).))))))))))....)))))..)))).))))))))..***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023

head

 O002

Head

 M024

male body		 SRR553485

Chicharo_3 day-old ovaries

 M053

female body

 SRR553487

NRT_0-2 hours eggs

 SRR553488

RT_0-2 hours eggs

 O001

Testis

 SRR553486

Makindu_3 day-old ovaries

 GSM343915

embryo

 M025

embryo

 SRR902009

testis

 SRR618934

dsim w501 ovaries
...............................................................................TGGGTAAACTCCCAAGGATC....................................................................................................................... 20 0 1 1375.00 1375 1274 7 75 1 10 1 2 0 0 0 5 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAG..................................................................................................................... 22 0 1 308.00 308 146 121 11 3 9 3 3 9 0 0 1 2 0
...............................................................................TGGGTAAACTCCCAAGGATCAGG.................................................................................................................... 23 0 1 221.00 221 10 10 3 101 30 23 18 0 14 10 0 2 0
...............................................................................TGGGTAAACTCCCAAGGAT........................................................................................................................ 19 0 1 162.00 162 150 7 5 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCA...................................................................................................................... 21 0 1 155.00 155 28 98 2 7 13 3 3 1 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATC....................................................................................................................... 20 1 1 104.00 104 99 0 5 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCTC................................................................................ 22 0 1 47.00 47 41 2 0 0 0 0 0 2 0 0 2 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTC................................................................................ 20 0 1 43.00 43 32 1 9 0 0 0 0 1 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGA......................................................................................................................... 18 0 1 43.00 43 1 37 0 0 0 0 0 5 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATCAG..................................................................................................................... 22 1 1 36.00 36 28 0 4 0 4 0 0 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGAT........................................................................................................................ 20 0 1 28.00 28 26 0 2 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGATC....................................................................................................................... 21 0 1 21.00 21 19 0 2 0 0 0 0 0 0 0 0 0 0
............................................................ATGTAAGCTGGCCTGTCCC........................................................................................................................................... 19 0 1 21.00 21 17 0 2 0 0 0 0 0 0 0 2 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTCG............................................................................... 21 0 1 13.00 13 6 2 0 0 3 0 0 0 0 1 0 1 0
...............................................................................TGGGTAGACTCCCAAGGAT........................................................................................................................ 19 1 1 9.00 9 9 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGAC........................................................................................................................ 19 1 1 8.00 8 8 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCTCG............................................................................... 23 0 1 8.00 8 3 2 1 0 1 0 0 0 0 1 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGC.................................................................................... 18 0 1 7.00 7 0 6 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTC.................................................................................. 20 0 1 7.00 7 3 3 0 0 0 0 0 1 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGGA................................................................................................................... 24 1 1 7.00 7 5 0 0 1 0 1 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTCGG.............................................................................. 22 0 1 6.00 6 0 3 0 0 3 0 0 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 5.00 5 2 0 0 0 3 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGGT................................................................................................................... 24 0 1 5.00 5 0 0 0 2 2 0 0 0 1 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATCA...................................................................................................................... 21 1 1 5.00 5 3 0 0 0 1 0 0 0 1 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGT.................................................................................................................... 23 1 1 5.00 5 1 0 0 1 3 0 0 0 0 0 0 0 0
....................................................................................................................CTATCCTTGGGTTTCTGCTCTC................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GGGTAAACTCCCAAGGATCAG..................................................................................................................... 21 0 1 4.00 4 1 1 0 0 2 0 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTC.................................................................................. 18 0 1 4.00 4 2 1 1 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGGGTAGACTCCCAAGGATC....................................................................................................................... 21 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAGGGATC....................................................................................................................... 20 2 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATCAGGA................................................................................................................... 24 2 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGCAAACTCCCAAGGATC....................................................................................................................... 20 1 1 3.00 3 2 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCT................................................................................. 21 0 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGA......................................................................................................................... 19 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TCGGTAAACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGGAAACTCCCAAGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCTCGG.............................................................................. 24 0 1 2.00 2 0 0 0 0 1 0 0 1 0 0 0 0 0
...........................................................GATGTAAGCTGGCCTGTCCCT.......................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACCCCCAAGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGCGTAAACTCCCAAGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GGGTAAACTCCCAAGGATCAGG.................................................................................................................... 22 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCC...................................................................................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAC..................................................................................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAGGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................CGCGATGATGTAAGCTGGCCT................................................................................................................................................ 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TTGGTAAACTCCCAAGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................GGGGTAAACTCCCAAGGATC....................................................................................................................... 20 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGAG........................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GGGTAGACTCCCAGGGATCAGG.................................................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGATTTCTGCTCTC................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCTT................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCTCAAGGATCA...................................................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCG................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCGAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGATCA...................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGAG........................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TAGGTAAACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................TGGGTAAACTCCCAAAGATCAGG.................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAAGTCCCAAGGATCAGGT................................................................................................................... 24 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGGG................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................GATCCTTGGGTTTCTGCTCTCGG.............................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTGGACTCCCAAGGATCAG..................................................................................................................... 22 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTCTG.............................................................................. 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................GGGTAAACTCCCAAGGATCA...................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................GATCCTTGGGTTTCTGCTCTC................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGATCT...................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGA.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................CGATCCTTGGGTTTCTGCTCTCC............................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTT................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCTAAGGATCAGG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................TGGGGAAACTCCCAAGGATCAGA.................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
................................................................................GGGCAAACTCCCAAGGATCA...................................................................................................................... 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGATCT...................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................GGTAAACTCCCAAGGATCAG..................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTCGA.............................................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
...............................................................................TGGGTAAACTACCAAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGAGTAAACTCCCAAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCGGG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...............................................................................TGGGTAAGCTCCCAAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TCGGTAAACTCCCAAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGCTTCTGCTCTCG............................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCATGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCAAGGAGCAGG.................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................TGGATAAACTCCCAAGGATCAG..................................................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................GGGTAAACTCCCAAGGATC....................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................TGGGAAAACTCCCAAGGATC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAGACTCCCGAGGATCGGG.................................................................................................................... 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAACGATCAGT.................................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGGAAACTCCCAAGGAT........................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTGAACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGGTC....................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................GGGTAAACTCCCAAGGAT........................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGCGTAAACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGAC........................................................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCAGGC................................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................CTGGGTAAACTCCCAAGGATCAG..................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................ATCCTTGGGTTTCTGCTCTCGT.............................................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................CGGGTAAACTCCCAAGGATCAGG.................................................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCCCAAGGATCG...................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................TGGGTAAACTCTCAAGGAT........................................................................................................................ 19 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................GTTTATGAATTATTCGAGG............................................................................................................................................................................ 19 2 3 0.33 1 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................GTTACTCCTCTCTGGCAAGG........................................................................ 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................CCCGCGAGGGGCCCGG............................................... 16 2 10 0.10 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................CGTTAGCCCTCGTTGATG........................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................ACCTAGCGAATATCCC.......... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1
............................................GGATTAGCCCGCGTGGAT............................................................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GTATGTATGGATGTATATGTATGTATACAAATACGTAAGAAGCTCCCAATCGGGCGCTACTACATTCGACCGGACAGGGACCCATTTGAGGGTTCCTAGTCCACCTCTAACTTAGGGCTAGGAACCCAAAGACGAGAGCCCGTTCCAGTCGTCACGGGCGCTTCCCGGGTCGACAAACAATTGAGGAAATCATGGATCGCTTACAGGAAATTGTTTCA

*****************************************************************..((((((((((((..(((((....((((((((((.((............)).))))))))))....)))))..)))).))))))))..**************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024

male body		 SRR618934

dsim w501 ovaries

 M023

head

 O001

Testis

 SRR553487

NRT_0-2 hours eggs

 SRR553486

Makindu_3 day-old ovaries

 SRR553488

RT_0-2 hours eggs

 SRR553485

Chicharo_3 day-old ovaries

 M025

embryo
..................................................CGGGCGCTACTACATTCGACC................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................GTCACGGGCGCTTCCCGGGTC............................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
........................................................................................AGGGTTCCGAGTCCACCTC............................................................................................................... 19 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................TCATGGATCGCTTACAGGAAA........ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................CGCTTCCCGGGTCGACAA.......................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.....................................................................................................................................GCGAGCCCGTTCTAGTCG................................................................... 18 2 2 0.50 1 0 0 0 0 1 0 0 0 0
.....................................................................................................................................GAGAGCCGGTTCCAATC.................................................................... 17 2 11 0.27 3 0 3 0 0 0 0 0 0 0
................................................................................................................................................CCAGTCGTCAGGTGCCCTT....................................................... 19 3 20 0.25 5 0 0 4 0 0 0 0 0 1
.......................................................................................................................................GAGCCCGTTCTAGTC.................................................................... 15 1 5 0.20 1 0 0 0 0 0 1 0 0 0
........................................................................................................................................AGCGCGTTCCAGTCTTC................................................................. 17 2 5 0.20 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................GCGAGCCCGTTCTAGTC.................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................CGCGAGCCCGTTCTAGTCGG.................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0
............................................................................................................CAGTTAGGGCTAGGCACCC........................................................................................... 19 3 9 0.11 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................TCGCTAACAGGTAATTGATT.. 20 3 15 0.07 1 1 0 0 0 0 0 0 0 0
...TATATGGATGTATATGTA..................................................................................................................................................................................................... 18 1 20 0.05 1 0 1 0 0 0 0 0 0 0
....ATATGGATGTATATGTA..................................................................................................................................................................................................... 17 1 20 0.05 1 0 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSim2 3r:22893154-22893371 - dsi-mir-1001 Known_mirbase CATAC----ATACCTACA----TATACA-TA---------------------------CATATGTTTATGCATTCTTCGAGGGTT-A----------------GCC----------------------CGC----------------GATGA-------TGTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGCA----AGGTCAGCAGTGCCCG--CGAAGG-GCCCAGCTGTTTGTTAACTCC-T-------TTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAA----------------------GT
droSec2 scaffold_22:111492-111731 - dse_30 confident CATAC----ATACCTACA----TATACA-CA---------------------------CATATGTTTATGCATTCTTCGAGGGTT-A----------------GCC----------------------CGC----------------GATGA-------TGTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGATTCTGCTCTCGGGCA----AGGTCAGCAGTGCCCG--CGAAGG-GCCCAGCTGTTTGTTAACTCC-T-------TTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAAGTATTATTATTATTTATATATAGT
dm3 chr3R:23468124-23468345 - dme-mir-1001 Known_mirbase CATAC----ATACCTACATACATATACA-TA---------------------------CATATGTTTATGCATTCTTCGAGGGTT-A----------------GCC----------------------CGC----------------GATGA-------TGTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGCA----AGGTCAGTAGTGCCCG--CGAAGG-GCCCAGCTGTTTGTTAACTCC-T-------TTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAA----------------------GT
droEre2 scaffold_4820:4569035-4569243 + der_81 confident CCT--------------------------------------------------------ATATGTTTATGCATTCTTCAAGGGCT-A----------------GCC----------------------CGCGTAAGGTGTATA----GATGA-------TGTAAACTGGC-CTGTCCCTG-GGCAA--ACTCCC--AATGAT-----------------------GCGGTGT--ACATAGAAT-------------------------CCCGATCCTTGGGCTTCTGCCCACGGGCA----AGGACAGTAGTGCCCG--CGAAGG-GCCCAA-TGTTTGTTAACTCC-T-------TTAGTA---CTTAGCGA-ATGTCCTTTAAC--AAA----------------------GT
droYak3 3R:23018667-23018846 + dya_42 confident CCTAT----A------------------------------------------------------------------------------------------------------------------------CGCAAGGTGTATA----GATGA-------TGTAAACTGGC-CTGTCCCTG-GGTAA--ACTCCC--AATGAT-----------------------CCGGTGT--ACATTGAAT-------------------------TCGGATCCTTGGGTTTGAGCCCAAGGACA----AGGACAGTAGTGCCCG--CGAAGG-GCCCAA-TGTTTGTTAACTCC-T-------TTAGTA---TTTAGAGA-ATATCCTTAAAC--AAA----------------------GT
droEug1 scf7180000409770:952482-952676 - CATAC----AT-------------------A---------------------------TATATGTTTATGCATTCTTCAATGGTT-A----------------GCC----------------------CTTGGAAGGTGTATA----GATAA-------TGTAAACTGAC-CTGTCCCTA-AGAAA--CTCCCT--AATGA-------------------------------------------------------------------------TCTTGGGATTCTGCTTATGGACA----AGGACAGTAGTGCCCTCACAGAGG-GCCCAA-TGTTTGTTAACATCCT-------TTAGCA---TGTAGCAA-ATATCCTTTAAC--AAA----------------------GT
droBia1 scf7180000302075:1453648-1453841 + A-TAC----ATACCT--------------------------------------------ATGTGTTTATGCACTCTTCAATGGCC-A----------------GCC----------------------CTTGAGAGGTGCATA----GATAG-------TGTAAGCTGGC-CTGCCCCAG-ATCAAGGA-TCCC--AATGA-------------------------------------------------------------------------TCTTGGTAAACTGCTCAGGGGCA----AGGTCAGTAGAGCCCG--CAGAGG-G-CCAA-TTTTTGTTAACTCC-C-------CTAGTA---TGTAGCGAAATATCCCTTAAC--AAA----------------------GT
droTak1 scf7180000413872:362722-362859 - A-TAC----AT------------------------------------------------------TA---------------------------------------------------------------------ATGTATA----GATAA-------TA-AAGCTGAC-CTTCCCCTG-AGCAAGTATTCCC--AATGA-------------------------------------------------------------------------CCTTGGGACTGTGCCCAAGGGCA----GGGTCAGC-------------------ACAA-CGTTTGTTAACTCC-T-------TTAGTA---TGTAGCAA-ATATCCTTTAAA--AAA----------------------GT
droEle1 scf7180000491261:1964164-1964371 - -----------------------------------------------------------ATATGTTTATGCATTCTTCAATGGTTTA----------------GTC----------------------CTTGAAAGGTGTATA----GATAC-------TGTAAGCTGAC-CTGCCCCTG-AGCAA--TTCGCC--ACAGAA-----------------------AAGGATG--AAATTTAAT-------------------------C-TGAACCCTAGGACACTGCTCTTGGGCA----AGGACAGTACTGCCCAACCAGAGG-GCCCGA-TGTTTGTTAACTCC-T-------TTAGTA---TGTAGCGA-ATATCCTTTAAC--AAA----------------------GT
droRho1 scf7180000779391:18295-18510 + T------------------------------------------------------------ATGTTTATGCATTCTTCAATGGTT-A----------------GCC----------------------CTTGGAAGGTGTATA----GATGA-------TGTAAGCTGTC-CTGCCCCTG-AGCAA--TTCCGC--AAAAAA-----------------------AAGGATG--AAATTGGATT-AAAAT------CACA--------TCTTAACCCTAGGTTTCTGCTCATGGGCA----AGGACAGTACTGCCCC-CCAGAGG-GCCCAA-TGTTTGTTAACTCC-T-------TTAGTA---TGTAGCGA-ATATCCTTTAAC--AAA----------------------GT
droFic1 scf7180000453826:246831-247038 + TGT--------------------------------------------------------ATGTGTTTATGCAATTTTCAATGGTC-A----------------ACC----------------------CTTGGAAGTTGTATA----GATAA-------TGTAAGCTGAT-CTGCCCAGG-AGCAA--ATCCCTTGAAAGAT-----------------------CAGGTGT--ATATAGG-C-------------------------CCTGA-TCTTGGGTAAATGCTTGTGGGCA----CAGACAGTAGAGCCCC---AGAGG-CCACAA-TGTTTGTTAAATCC-T-------CTAGTT---CGTAGCGA-ATGTCCTTTAAC--AAA----------------------GT
droKik1 scf7180000302697:740309-740499 - CAAA------------------------------------------------------------------------------------------------------------------------------------GTATGTT----GAGGA-------TATGCGCTGTC-CTGCCCCTG-GGCAG--ATCCCC--GGAGAGGAGGGATGCTCTTGCGATCCGGCCAGGTGT--AAATTGAATT-TAACC-------ACAGC------CCCA--GCTCAGGTCACTGTCCAGGGGCA---GAAGGCAGCA----------------GCCCGA-TGTTTGTTAACTCCCCCTAGTCCCTAGTA---TGTAGCGA-ACAC-----------AA----------------------GT
droAna3 scaffold_13340:19221664-19221881 + CCGAC----ATAGTT-------------------------------------------TATATATTTATGCATAGTCCAATAA-----------------------GATACTATTATC----------CTTGGAGTGTGTATA----GATGA-------TGTGAGCTGTC-CTGTCCCTG-GGAGG--ATCACC--TG---------------------------------TAG-TATTAAATT-AAAT----------------------GGAACAAAGGTCTCCCCCTAGGGGCA----AGGACAGCATTGGCCA--CG--AG-GCTCAA-TGTTTGTTAATTCCTT-------TTAGTA---TGTAGCGA-ATATCCCTTAACGAAAA----------------------GT
droBip1 scf7180000396413:3143006-3143210 - TAAACCGACATAG----------------TA---------------------------TATATATTTATGCATAGTCCAATAA-----------------------GATACGATTATC----------CTTGGAGTGTGTATA----GATGA-------TGTGAGCTGTC-CTGTCCTTG-GGAGG--ATCACC--TG---------------------------------TAG-TATTAAATT-CAAT----------------------GAAAGACAGGCCTCCGCCCAGGGGCC-------------------A--TG--AG-GCTCAA-TGTTTGTTAATTCCTT-------TTAGTA---TGTAGCGA-ATATCCCTTAAT--GAA----------------------AA
dp5 2:3822325-3822590 - CCCG-----ATAA----------------------------------------------------CTATACACTATCCATCGGTTGAGGCTATACTATACTATCCC----------------------CATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGTGGCGG--ACACAC--GG-CA-GATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGA-AAACCACCTGC-------ATTCGGGTGCCGCCCCTGGGTCTGAGAGGG---------CTG--AG--AGAG-AGAA-TGTTTGTTAATTCC-T-------TTAGTATTATATAGAGT-ATATCCCTTATCACAAA----------------------GT
droPer2 scaffold_7:528109-528365 + TATAC----AC--------------------------------------------------------------TATCCATCGGTTGAGGCTACACTATACTATCCC----------------------CATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGGGGCGG--ATACAC--GG-CA-GATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGA-AAACCACCTGC-------TTTCGGGTGCCGCCCCTGGGTCTGAGAGGG---------CTG--AG--AGAG-AGAA-TGTTTGTTAATTCC-T-------TTAGTATTATATAGAGT-ATATCCCTTAACACAAA----------------------GT
droWil2 scf2_1100000004902:3707301-3707315 - TATCT----TA-C----A----TATA--------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:2154388-2154562 + AACAA----AA-T-AAA-------AC--A-ACAAGT-TTGTTAATTTCGGCTAGCTGAAATTTGTTTATACCCTTTCCAATGTTAAG----------------CCC----------------------CTTGGAAAATGTATG----AATCT-------CGTAACAT----------------------------------------------------------------------------TCGTAACAAGAGA-TG---------------------------------------------T---T---------------C-GCCAAA-CTTTTGTTAATTCC-T-------TTAGTATTTA--AGTGA-AAGCAACACG---------------------CCAATCGAGT
droMoj3 scaffold_6540:32461017-32461190 + TATAC----CCTATAATACA----GTCTA-TAACACAAAGCAAATTTCGGCTAGCTGAAATTGGTTTATGCTCTTTCCAAAAG--------------------------ATTTTCATT----------TTTGGCAAGCGTATA----ATGAA-------TACCAA----------------AGAAA--ATACC-------------------------------------------------------------------------------------------------------------------TAACACTCG--TAAG-----AGAA-GTTTTGTTAACATA--------------A---CTTAAGAA-ATACC----AAC--AAA--------------------GAGT
droGri2 scaffold_15074:2155820-2156045 + CATAC----AAAATAATACA----CTACA-ACAAATATTGTTAATTTCGGCTAGCTGAAATTATTTGATACCCCTTCCAATAA-----------------------AAAATCACCATTTGTGCTGGCTATTGGAAAGTGTATGAATTTGTGAGGAGTTTGGTAAATTCACTCTCA----------------------------------------------------------------AGATG------------------------------------------------------------T---T---------------A-GCCAAA-CTTTTGTTAAATTCGT-------TAACTA---TTTAGGCA-ATGGTTCTTAAAATA-AGCAACAGCAA-ATGCCAATTGAGT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CATAC----ATACCTACA----TATACA-TA---------------------------CATATGTTTATGCATTCTTCGAGGGTT-A----------------GCC----------------------CGC----------------GATGA-------TGTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGCA----AGGTCAGCAGTGCCCG--CGAAGG-GCCCAGCTGTTTGTTAACTCC-T-------TTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAA----------------------GTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------C.............................................................................................................................................................................................2011375.0013751274755100710120000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAG...........................................................................................................................................................................................221308.003081461119912130330002000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGG..........................................................................................................................................................................................231221.0022110303001010114231801002000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------..............................................................................................................................................................................................191162.001621505000700000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CA............................................................................................................................................................................................211155.0015528201319870330000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTC...........................................................................................................................22147.0047410202200000000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTC...........................................................................................................................20143.0043329001100000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGA......................................................................................................................................................................................................................18143.0043100053700000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------..............................................................................................................................................................................................20128.0028262000000000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------C.............................................................................................................................................................................................21121.0021192000000000000000
.......................................................................................................................................................A-------TGTAAGCTGGC-CTGTCCC.............................................................................................................................................................................................................................................19121.0021172200000000000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCG..........................................................................................................................21113.001360030200000101000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAC-----------------------..............................................................................................................................................................................................1918.00880000000000000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCG..........................................................................................................................2318.00831010200000100000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGC...............................................................................................................................1817.00700001600000000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTC.............................................................................................................................2017.00730001300000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGA.........................................................................................................................................................................................2417.00750000010100000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCGG.........................................................................................................................2216.00600030300000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGT.........................................................................................................................................................................................2415.00500020021000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGT..........................................................................................................................................................................................2315.00510030010000000000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAG...........................................................................................................................................................................................2114.00410020100000000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTC.............................................................................................................................1814.00421000100000000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCT............................................................................................................................2113.00321000000000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGA......................................................................................................................................................................................................................1913.00320000100000000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCGG.........................................................................................................................2412.00200011000000000000
......................................................................................................................................................GA-------TGTAAGCTGGC-CTGTCCCT............................................................................................................................................................................................................................................2112.00220000000000000000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAGG..........................................................................................................................................................................................2212.00200020000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CC............................................................................................................................................................................................2112.00220000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAC...........................................................................................................................................................................................2212.00220000000000000000
................................................................................................................................CGC----------------GATGA-------TGTAAGCTGGC-CT..................................................................................................................................................................................................................................................2112.00220000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAG-----------------------..............................................................................................................................................................................................1911.00110000000000000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTT...........................................................................................................................2211.00110000000000000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCG............................................................................................................................2111.00110000000000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CA............................................................................................................................................................................................2211.00100000000010000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAG-----------------------..............................................................................................................................................................................................2011.00110000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGG.........................................................................................................................................................................................2411.00110000000000000000
...............................................................................................................................................................................................................................................................................GATCCTTGGGTTTCTGCTCTCGG.........................................................................................................................2311.00100000010000000000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CA............................................................................................................................................................................................2011.00100010000000000000
...............................................................................................................................................................................................................................................................................GATCCTTGGGTTTCTGCTCTC...........................................................................................................................2111.00100000100000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CT............................................................................................................................................................................................2211.00110000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGA..........................................................................................................................................................................................2311.00100000000100000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCC..........................................................................................................................2311.00110000000000000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTT...........................................................................................................................2011.00110000000000000000
.....................................................................................................................................................................................GGTAA--ACTCCC--AAGGAT-----------------------CAG...........................................................................................................................................................................................2011.00100010000000000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCGA.........................................................................................................................2211.00100000000000001000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------C.............................................................................................................................................................................................1911.00100010000000000000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------..............................................................................................................................................................................................1811.00110000000000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAC-----------------------..............................................................................................................................................................................................2011.00110000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGC.........................................................................................................................................................................................2411.00110000000000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CAG...........................................................................................................................................................................................2311.00110000000000000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCGT.........................................................................................................................2211.00110000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CG............................................................................................................................................................................................2111.00110000000000000000
droSec2
CATAC----ATACCTACA----TATACA-CA---------------------------CATATGTTTATGCATTCTTCGAGGGTT-A----------------GCC----------------------CGC----------------GATGA-------TGTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGATTCTGCTCTCGGGCA----AGGTCAGCAGTGCCCG--CGAAGG-GCCCAGCTGTTTGTTAACTCC-T-------TTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAAGTATTATTATTATTTATATATAGTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGG..........................................................................................................................................................................................231913.0091312817367545
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAG...........................................................................................................................................................................................221595.005959013537333
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CA............................................................................................................................................................................................211192.0019251127122
..............................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCGG.........................................................................................................................241168.0016874172255
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGG.........................................................................................................................221141.001419911229
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGT.........................................................................................................................................................................................24190.0090442044
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCG..........................................................................................................................21185.00851532137
..............................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCG..........................................................................................................................23182.00822215540
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------C.............................................................................................................................................................................................20163.0063240138
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTC...........................................................................................................................20151.0051125034
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGT..........................................................................................................................................................................................23127.002741508
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGA.........................................................................................................................................................................................24120.002017111
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAGG..........................................................................................................................................................................................22116.001615100
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTT........................................................................................................................................................................................25116.001601105
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAG...........................................................................................................................................................................................21115.001515000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTC...........................................................................................................................22113.00138113
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGA..........................................................................................................................................................................................23112.00122415
...............................................................................................................................................................................................................................................................................GATCCTTGGGATTCTGCTCTCGG.........................................................................................................................23112.00129012
.................................................................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTCGG.........................................................................................................................21111.00118120
...............................................................................................................................................................................................................................................................................GATCCTTGGGATTCTGCTCTCG..........................................................................................................................2219.0094302
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------C.............................................................................................................................................................................................2117.0074003
..............................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCGGT........................................................................................................................2516.0060105
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGGT........................................................................................................................2316.0066000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCT............................................................................................................................2115.0054001
...............................................................................................................................................................................................................................................................................GATCCTTGGGATTCTGCTCTC...........................................................................................................................2114.0044000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGC.........................................................................................................................................................................................2414.0040103
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CA............................................................................................................................................................................................2213.0031011
.....................................................................................................................................................................................GGTAA--ACTCCC--AAGGAT-----------------------CAG...........................................................................................................................................................................................2013.0032001
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGT.........................................................................................................................2213.0031101
..............................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTC.............................................................................................................................2013.0032001
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------C.............................................................................................................................................................................................1913.0033000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGC..........................................................................................................................................................................................2313.0030003
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------..............................................................................................................................................................................................1912.0022000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------..............................................................................................................................................................................................2012.0020002
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAGGT.........................................................................................................................................................................................2312.0022000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CA............................................................................................................................................................................................2012.0022000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGG.........................................................................................................................................................................................2412.0021001
.................................................................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTCG..........................................................................................................................2012.0022000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CAG...........................................................................................................................................................................................2312.0022000
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGCTT.......................................................................................................................2411.0010001
..............................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCT..............................................................................................................................1911.0011000
............................................................................................................................................................................................................................................................................CCCGATCCTTGGGATTCTGCTCTCGG.........................................................................................................................2611.0010001
.....................................................................................................................................................................................GGTAA--ACTCCC--AAGGAT-----------------------CA............................................................................................................................................................................................1911.0011000
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGGC........................................................................................................................2311.0011000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGG..........................................................................................................................................................................................2411.0010001
.......................................................................................................................................................A-------TGTAAGCTGGC-CTGTCCC.............................................................................................................................................................................................................................................1911.0010001
.................................................................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTCGGTA.......................................................................................................................2311.0010100
.................................................................................................................................................................................................................................................................................................................................................TGTTAACTCC-T-------TTAGTA---CCTA..............................................2111.0011000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CT............................................................................................................................................................................................2011.0011000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAGGA.........................................................................................................................................................................................2311.0011000
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTA...........................................................................................................................2011.0011000
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGGTT.......................................................................................................................2411.0010001
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTTT--.....................................................................................................................................................................................2611.0010100
.................................................................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTAAA.........................................................................................................................2111.0010100
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCT..........................................................................................................................2111.0011000
.....................................................................................................................................................................................GGTAA--ACTCCC--AAGGAT-----------------------CAGG..........................................................................................................................................................................................2111.0011000
...............................................................................................................................................................................................................................................................................GATCCTTGGGATTCTGCTC.............................................................................................................................1911.0011000
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGGG........................................................................................................................2311.0011000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCGA.........................................................................................................................2411.0010001
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAT...........................................................................................................................................................................................2211.0010001
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTT...........................................................................................................................2011.0010001
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCT............................................................................................................................1911.0010001
..............................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCTCGGTT.......................................................................................................................2611.0010001
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGA......................................................................................................................................................................................................................1911.0011000
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTCTCGC.........................................................................................................................2211.0011000
...................................................................................................................................................................................................................................................................................CTTGGGATTCTGCTCTCGG.........................................................................................................................1911.0011000
.................................................................................................................................................................................................................................................................................TCCTTGGGATTCTGCTCTCGGA........................................................................................................................2211.0010001
..............................................................................................................................................................................................................................................................................CGATCCTTGGGATTCTGCTCGG...........................................................................................................................2211.0010001
................................................................................................................................................................................................................................................................................ATCCTTGGGATTCTGCTTA............................................................................................................................1960.1710001
dm3
CATAC----ATACCTACATACATATACA-TA---------------------------CATATGTTTATGCATTCTTCGAGGGTT-A----------------GCC----------------------CGC----------------GATGA-------TGTAAGCTGGC-CTGTCCCTG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTGG--AGATTGAAT-------------------------CCCGATCCTTGGGTTTCTGCTCTCGGGCA----AGGTCAGTAGTGCCCG--CGAAGG-GCCCAGCTGTTTGTTAACTCC-T-------TTAGTA---CCTAGCGA-ATGTCCTTTAAC--AAA----------------------GTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CA............................................................................................................................................................................................2115753.005753000016100011100100000000000016522823000000000000000010010000042266000000000000000000000944000000345118013289265223121354011007041162321373232701461643812441991823316800000000000000000000100000000000000039446402832159251524061971210400000873010000101000000000000000000300408124135000140002005201000251101000001300000000000200000010000000006674857601127120000001703100000001000000001610203000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGG..........................................................................................................................................................................................2315608.00560800002000000100300600001100104399740100100000100100000000001020000000000000000000001100000001213114487161140179100020023120177367264199743375579683300000000000000000000500000000000000012214907900123913108564217031000002486071000308000000000000000002213373923014500001000912018792000726002100003990000000000050001316262200000423464327349263102560504231050837400016001301008000152385517372214001000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAG...........................................................................................................................................................................................2214962.004962000080000000004002000001000034134131100100120000000000000000312060000000000000000000001800000001314005484243089178300100302110421424103007556181368911476000000000000000000004000000000000000211204014100121148414331452237600000277504300010140000000000000000013156210900100000000046083210004123012000015400000100000401002111503000012342321922550261065806020473056550025400200001300015882619332119000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------C.............................................................................................................................................................................................2012945.0029450000300000000020003000000001141661160000000000000000000000001000000000000000000000001200000000001102310600311150000003001005316054412066174129610124109000100007000000000001000000000000000138227010721881264182118702431500000247000000010000000000000000000000000360000000000000001130000811010000000000000000010000000000000000262230470001010000001100100000000000001601000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGATC--.....................................................................................................................................................................................261570.005700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000396174000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------..............................................................................................................................................................................................191327.00327000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010060100004700000000000000111000202019023140000000000000000000000000000000000003455010002811103402500000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000012020000000000000000000000000000000100000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGT.........................................................................................................................................................................................241314.00314000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000020041300009000000010000003000011502011000000000000000000004000000000000000740200031101080000009000000000100000000000000000010010010100000000000000200004301000008000000000000000000000020000021172310001230300005014100002100300000000845166447000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGA......................................................................................................................................................................................................................181275.002750000000000000040000000000002216405100000000000000000000000000000000000000000000001000000000000000000005000000000000004060000001160240201000001000000000000000000000000000203120064223020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCGG.........................................................................................................................221184.00184000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010122320300105210000000001000600000000002100000000001000000000000000000000000012110100910207171910000015100000000000000000000000000000000000000000000000300000001100000000000000000000010000001000000000000000000000000000000000000000000100000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CATC..........................................................................................................................................................................................231165.00165000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011649000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTCG..........................................................................................................................211159.00159000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000010020000024000000000000001000001100000000000000000000000000000000000000000711030040100336000000940000000000000000000000000000100000000000000000100020000030000000000000000010100000000100000006271101320200012034000000000000000042093122000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCG..........................................................................................................................231112.0011200000000010000000000000000000000000100000000000000000000000000000000000000000000000000000000003010000200000000000000021000010001200000000000000000000000000000000000002501001101010100000081000000000000000000000000000020000000000000000023002000002000000100000000000000000000000000000401400100100001032000000000000000041453020000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTCGG.........................................................................................................................24178.007800000000000000002000000000000000000000000000000000000000000000000000000000000000000000000010002000010600000000000000100000000000200000000000000000000000000000000000068040140110751100000013000000000000000000000000000000000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CC............................................................................................................................................................................................21176.0076000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010030000000000000000000011480000000921217000000000000000000000000000000000000130110000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGA.........................................................................................................................................................................................24169.0069000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000001020102021000000000000000000000000000000000000130200110102010000002000000000000000000000000000001110000000000044000001000001000000001000000000000000000000000000012370033000000102000000000000000002131000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGT..........................................................................................................................................................................................23166.0066000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101013400041000000000000000000000000000000000000020100010201010000005000000000000000000000000000000000010100000000000100100002200000000000000000000000000000000000065310111000001300100000000000000000501000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------C.............................................................................................................................................................................................21159.0059000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000020000007000000000000003000000101012000000000000000000000000010000000000620500221204070000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCT............................................................................................................................21150.00500000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000001000030000000000000020000110000000000000000000000000000000000000000002300002301020200000012000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000002120001000000100000000000000000001300000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGA..........................................................................................................................................................................................23149.0049000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030010000100000000000000004001010300020000000000000000000000000000000000000220000010201020000002000000000000000000000000000000000000000000002000000000001100000000000000000000000000000000000031230022000000100100000001000000000100000000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCTC...........................................................................................................................20139.0039000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120131001102210000003000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000013550000000000001000000000000000000210001000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTCTC...........................................................................................................................22133.0033000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010011000000000000000000000100011300010000000000000000000000000000000000000330101011000110000001000000010000000000000000000000000000000000000000000200001000000000000000000000001000000000000010120000000000000000000000000000000000000000000
.......................................................................................................................................................A-------TGTAAGCTGGC-CTGTCCC.............................................................................................................................................................................................................................................19133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000160120000000000000300000000000000000322000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAA...........................................................................................................................................................................................22132.0032000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000010000000000041000004000000000000000000000000000000000000200100220101020000001000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000013000000010000100000000000000000000000000000000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------C.............................................................................................................................................................................................19131.0031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000020002123000000000000000000000000000000000000130100020006070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CA............................................................................................................................................................................................22129.0029000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030020000000000000000000001100000000000000000000000000000000000000000000000180400110301000000002000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGTT........................................................................................................................................................................................25122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000100000000000000000000002100000000000000000000000000000000000021200000000000200000000000000000001202011000000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CA............................................................................................................................................................................................20122.0022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100010001010000000000000000000000000000000000000430400010001010000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAT...........................................................................................................................................................................................22121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101032000000000000000000000000000000000000310000000100000000002000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000001000000100000000000000000000100100000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CT............................................................................................................................................................................................21119.0019000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000010000000000000000000000100100000001011000000000000000000000000000000000000370100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAC...........................................................................................................................................................................................22117.0017000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000040000000000000000000000001000010000000000000000000000000000000000000000000000100000000000000002000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000220000000000100000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CG............................................................................................................................................................................................21117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001100000000000101000000000111000100000000000000000000000000000000210100010100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------A.............................................................................................................................................................................................20116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001020104001000000000000000000000000000000000000010200000100030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGC..........................................................................................................................................................................................23115.0015000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000100000010001010000000000000000000000000000000000000000000000000000000000100000000000001000000000000000000000000000021010001000000100100000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGC.........................................................................................................................................................................................24113.0013000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000101000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010220010000000100000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------G.............................................................................................................................................................................................20113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000100010004040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------T.............................................................................................................................................................................................20112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100042000000000000000000000000000000000000000100200100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGC......................................................................................................................................................................................................................18111.0011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000712000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TCCTTGGGTTTCTGCTCTCGG.........................................................................................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000008000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGTTTCTGCTC.............................................................................................................................20110.0010000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000010000000000000000000000001000000000000000000000000000000000000000000000000101000101001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ATCCTTGGGTTTCTGCTCT............................................................................................................................19110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100100000000200000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000010000000000000000000000000000000000210000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGG.........................................................................................................................................................................................2418.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000210001000000000000000000000000000200100000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAGGAT........................................................................................................................................................................................2518.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000061000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------..............................................................................................................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000010000000101020000001000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAGG..........................................................................................................................................................................................2218.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000100110000000000002000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................TCCTTGGGTTTCTGCTCTCGGT........................................................................................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000200001000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AAGGAT-----------------------CATC..........................................................................................................................................................................................2417.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000052000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AAGGAT-----------------------CAATC.........................................................................................................................................................................................2417.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AAGGAT-----------------------CAG...........................................................................................................................................................................................2117.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000101020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
droEre2
CCT--------------------------------------------------------ATATGTTTATGCATTCTTCAAGGGCT-A----------------GCC----------------------CGCGTAAGGTGTATA----GATGA-------TGTAAACTGGC-CTGTCCCTG-GGCAA--ACTCCC--AATGAT-----------------------GCGGTGT--ACATAGAAT-------------------------CCCGATCCTTGGGCTTCTGCCCACGGGCA----AGGACAGTAGTGCCCG--CGAAGG-GCCCAA-TGTTTGTTAACTCC-T-------TTAGTA---CTTAGCGA-ATGTCCTTTAAC--AAA----------------------GTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..................................................................................................................................................................................TG-GGCAA--ACTCCC--AATGAT-----------------------GCGG..........................................................................................................................................................................................23152.0052160012330
..................................................................................................................................................................................TG-GGCAA--ACTCCC--AATGAT-----------------------GCG...........................................................................................................................................................................................2217.0072000050
...............................................................................................................................................................................................................................................................................GATCCTTGGGCTTCTGCCCACG..........................................................................................................................2215.0051002020
.................................................................................................................................................................................CTG-GGCAA--ACTCCC--AATGAT-----------------------GCG...........................................................................................................................................................................................2312.0020000020
...................................................................................................................................................................................G-GGCAA--ACTCCC--AATGAT-----------------------GCGG..........................................................................................................................................................................................2212.0022000000
.................................................................................GGCT-A----------------GCC----------------------CGCGTAAGGT.....................................................................................................................................................................................................................................................................................1811.0010000010
..................................................................................................................................................................................TG-GGCAA--ACTCCC--AATGAT-----------------------GCGT..........................................................................................................................................................................................2311.0010000010
...................................................................................................................................................................................G-GGCAA--ACTCCC--AATGAT-----------------------GCGGT.........................................................................................................................................................................................2311.0010000010
...............................................................................................................................................................................................................................................................................GATCCTTGGGCTTCTGCCCACGT.........................................................................................................................2311.0010000100
..................................................................................................................................................................................TG-GGCAA--ACTCCC--AATGAT-----------------------GC............................................................................................................................................................................................2111.0011000000
..............................................................................................................................................................................................................................................................................CGATCCTTGGGCTTCTGT...............................................................................................................................1811.0011000000
.................................................................................................................................................................................CTG-GGCAA--ACTCCC--AATGAT-----------------------G.............................................................................................................................................................................................2111.0011000000
droYak3
CCTAT----A------------------------------------------------------------------------------------------------------------------------CGCAAGGTGTATA----GATGA-------TGTAAACTGGC-CTGTCCCTG-GGTAA--ACTCCC--AATGAT-----------------------CCGGTGT--ACATTGAAT-------------------------TCGGATCCTTGGGTTTGAGCCCAAGGACA----AGGACAGTAGTGCCCG--CGAAGG-GCCCAA-TGTTTGTTAACTCC-T-------TTAGTA---TTTAGAGA-ATATCCTTAAAC--AAA----------------------GTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------CCG...........................................................................................................................................................................................221888.008881933349590190670000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AATGAT-----------------------CCG...........................................................................................................................................................................................21144.0044044000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------CCGT..........................................................................................................................................................................................23133.0033170015190000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------CC............................................................................................................................................................................................21117.0017113200100000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AATGAT-----------------------CC............................................................................................................................................................................................2015.00505000000000
...............................................................................................................................................................................................................................................................................GATCCTTGGGTTTGAGCCCAA...........................................................................................................................2115.00504000100000
.....................................................................................................................................................................................GGTAA--ACTCCC--AATGAT-----------------------CCG...........................................................................................................................................................................................2014.00404000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------C.............................................................................................................................................................................................2014.00400400000000
......................................................................................................................................................................................GTAA--ACTCCC--AATGAT-----------------------CCG...........................................................................................................................................................................................1912.00202000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------CCT...........................................................................................................................................................................................2212.00201000100000
.....................................................................................................................................................................................GGTAA--ACTCCC--AATGAT-----------------------C.............................................................................................................................................................................................1811.00101000000000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AATGAT-----------------------CCGT..........................................................................................................................................................................................2211.00101000000000
...................................................................................................................................................................................G-GGTAA--ACTCCC--AATGAT-----------------------CCGC..........................................................................................................................................................................................2211.00101000000000
...................................................................................................................................................GATGA-------TGTAAACTGGC-CTGTC...............................................................................................................................................................................................................................................2111.00101000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------CCC...........................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................................................................................................................................GATCCTTGGGTTTGAGCCCAC...........................................................................................................................2111.00100000100000
...........................................................................................................................................................................................................................................................................................................................CG--CGAAGG-GCCCAA-TGTTTGTT..........................................................................2211.00100000010000
.................................................................................................................................................................................CTG-GGTAA--ACTCCC--AATGAT-----------------------CCG...........................................................................................................................................................................................2311.00101000000000
..................................................................................................................................................................................TG-GGTAA--ACTCCC--AATGAT-----------------------CCGG..........................................................................................................................................................................................2311.00110000000000
droEug1
CATAC----AT-------------------A---------------------------TATATGTTTATGCATTCTTCAATGGTT-A----------------GCC----------------------CTTGGAAGGTGTATA----GATAA-------TGTAAACTGAC-CTGTCCCTA-AGAAA--CTCCCT--AATGA-------------------------------------------------------------------------TCTTGGGATTCTGCTTATGGACA----AGGACAGTAGTGCCCTCACAGAGG-GCCCAA-TGTTTGTTAACATCCT-------TTAGCA---TGTAGCAA-ATATCCTTTAAC--AAA----------------------GTSizeHit CountTotal NormTotal
No Reads
droBia1
A-TAC----ATACCT--------------------------------------------ATGTGTTTATGCACTCTTCAATGGCC-A----------------GCC----------------------CTTGAGAGGTGCATA----GATAG-------TGTAAGCTGGC-CTGCCCCAG-ATCAAGGA-TCCC--AATGA-------------------------------------------------------------------------TCTTGGTAAACTGCTCAGGGGCA----AGGTCAGTAGAGCCCG--CAGAGG-G-CCAA-TTTTTGTTAACTCC-C-------CTAGTA---TGTAGCGAAATATCCCTTAAC--AAA----------------------GTSizeHit CountTotal NormTotal
No Reads
droTak1
A-TAC----AT------------------------------------------------------TA---------------------------------------------------------------------ATGTATA----GATAA-------TA-AAGCTGAC-CTTCCCCTG-AGCAAGTATTCCC--AATGA-------------------------------------------------------------------------CCTTGGGACTGTGCCCAAGGGCA----GGGTCAGC-------------------ACAA-CGTTTGTTAACTCC-T-------TTAGTA---TGTAGCAA-ATATCCTTTAAA--AAA----------------------GTSizeHit CountTotal NormTotal
No Reads
droEle1
-----------------------------------------------------------ATATGTTTATGCATTCTTCAATGGTTTA----------------GTC----------------------CTTGAAAGGTGTATA----GATAC-------TGTAAGCTGAC-CTGCCCCTG-AGCAA--TTCGCC--ACAGAA-----------------------AAGGATG--AAATTTAAT-------------------------C-TGAACCCTAGGACACTGCTCTTGGGCA----AGGACAGTACTGCCCAACCAGAGG-GCCCGA-TGTTTGTTAACTCC-T-------TTAGTA---TGTAGCGA-ATATCCTTTAAC--AAA----------------------GTSizeHit CountTotal NormTotal
No Reads
droRho1
T------------------------------------------------------------ATGTTTATGCATTCTTCAATGGTT-A----------------GCC----------------------CTTGGAAGGTGTATA----GATGA-------TGTAAGCTGTC-CTGCCCCTG-AGCAA--TTCCGC--AAAAAA-----------------------AAGGATG--AAATTGGATT-AAAAT------CACA--------TCTTAACCCTAGGTTTCTGCTCATGGGCA----AGGACAGTACTGCCCC-CCAGAGG-GCCCAA-TGTTTGTTAACTCC-T-------TTAGTA---TGTAGCGA-ATATCCTTTAAC--AAA----------------------GTSizeHit CountTotal NormTotal
No Reads
droFic1
TGT--------------------------------------------------------ATGTGTTTATGCAATTTTCAATGGTC-A----------------ACC----------------------CTTGGAAGTTGTATA----GATAA-------TGTAAGCTGAT-CTGCCCAGG-AGCAA--ATCCCTTGAAAGAT-----------------------CAGGTGT--ATATAGG-C-------------------------CCTGA-TCTTGGGTAAATGCTTGTGGGCA----CAGACAGTAGAGCCCC---AGAGG-CCACAA-TGTTTGTTAAATCC-T-------CTAGTT---CGTAGCGA-ATGTCCTTTAAC--AAA----------------------GTSizeHit CountTotal NormTotal
No Reads
droKik1
CAAA------------------------------------------------------------------------------------------------------------------------------------GTATGTT----GAGGA-------TATGCGCTGTC-CTGCCCCTG-GGCAG--ATCCCC--GGAGAGGAGGGATGCTCTTGCGATCCGGCCAGGTGT--AAATTGAATT-TAACC-------ACAGC------CCCA--GCTCAGGTCACTGTCCAGGGGCA---GAAGGCAGCA----------------GCCCGA-TGTTTGTTAACTCCCCCTAGTCCCTAGTA---TGTAGCGA-ACAC-----------AA----------------------GTSizeHit CountTotal NormTotal
No Reads
droAna3
CCGAC----ATAGTT-------------------------------------------TATATATTTATGCATAGTCCAATAA-----------------------GATACTATTATC----------CTTGGAGTGTGTATA----GATGA-------TGTGAGCTGTC-CTGTCCCTG-GGAGG--ATCACC--TG---------------------------------TAG-TATTAAATT-AAAT----------------------GGAACAAAGGTCTCCCCCTAGGGGCA----AGGACAGCATTGGCCA--CG--AG-GCTCAA-TGTTTGTTAATTCCTT-------TTAGTA---TGTAGCGA-ATATCCCTTAACGAAAA----------------------GTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
.....................................................................................................................................................TGA-------TGTGAGCTGTC-CTGTCCC.............................................................................................................................................................................................................................................2111.001100000
droBip1
TAAACCGACATAG----------------TA---------------------------TATATATTTATGCATAGTCCAATAA-----------------------GATACGATTATC----------CTTGGAGTGTGTATA----GATGA-------TGTGAGCTGTC-CTGTCCTTG-GGAGG--ATCACC--TG---------------------------------TAG-TATTAAATT-CAAT----------------------GAAAGACAGGCCTCCGCCCAGGGGCC-------------------A--TG--AG-GCTCAA-TGTTTGTTAATTCCTT-------TTAGTA---TGTAGCGA-ATATCCCTTAAT--GAA----------------------AASizeHit CountTotal NormTotal
No Reads
dp5
CCCG-----ATAA----------------------------------------------------CTATACACTATCCATCGGTTGAGGCTATACTATACTATCCC----------------------CATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGTGGCGG--ACACAC--GG-CA-GATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGA-AAACCACCTGC-------ATTCGGGTGCCGCCCCTGGGTCTGAGAGGG---------CTG--AG--AGAG-AGAA-TGTTTGTTAATTCC-T-------TTAGTATTATATAGAGT-ATATCCCTTATCACAAA----------------------GTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..........................................................................................................................................................................................................................................................................................TGCCGCCCCTGGGTCTGAGA.................................................................................................................2011.0010100000000
droPer2
TATAC----AC--------------------------------------------------------------TATCCATCGGTTGAGGCTACACTATACTATCCC----------------------CATGGAACGTGTATACTTAGATGATGATACATATAAGCTGATTCTCTCCCAGGGGCGG--ATACAC--GG-CA-GATGGTGGCTTTACCGATCCGAT----------AATTGAATTTTAACCAAAAGA-AAACCACCTGC-------TTTCGGGTGCCGCCCCTGGGTCTGAGAGGG---------CTG--AG--AGAG-AGAA-TGTTTGTTAATTCC-T-------TTAGTATTATATAGAGT-ATATCCCTTAACACAAA----------------------GTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
No Reads
droWil2
TATCT----TA-C----A----TATA--------------------------------------------CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
No Reads
droVir3
AACAA----AA-T-AAA-------AC--A-ACAAGT-TTGTTAATTTCGGCTAGCTGAAATTTGTTTATACCCTTTCCAATGTTAAG----------------CCC----------------------CTTGGAAAATGTATG----AATCT-------CGTAACAT----------------------------------------------------------------------------TCGTAACAAGAGA-TG---------------------------------------------T---T---------------C-GCCAAA-CTTTTGTTAATTCC-T-------TTAGTATTTA--AGTGA-AAGCAACACG---------------------CCAATCGAGTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................................................................ATCT-------CGTAACAT----------------------------------------------------------------------------TCGTAACAAGAGA-..............................................................................................................................................................2511.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................AGTATTTA--AGTGA-AAGCAACA.................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TATTTA--AGTGA-AAGCAACAC................................2011.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
droMoj3
TATAC----CCTATAATACA----GTCTA-TAACACAAAGCAAATTTCGGCTAGCTGAAATTGGTTTATGCTCTTTCCAAAAG--------------------------ATTTTCATT----------TTTGGCAAGCGTATA----ATGAA-------TACCAA----------------AGAAA--ATACC-------------------------------------------------------------------------------------------------------------------TAACACTCG--TAAG-----AGAA-GTTTTGTTAACATA--------------A---CTTAAGAA-ATACC----AAC--AAA--------------------GAGTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
CATAC----AAAATAATACA----CTACA-ACAAATATTGTTAATTTCGGCTAGCTGAAATTATTTGATACCCCTTCCAATAA-----------------------AAAATCACCATTTGTGCTGGCTATTGGAAAGTGTATGAATTTGTGAGGAGTTTGGTAAATTCACTCTCA----------------------------------------------------------------AGATG------------------------------------------------------------T---T---------------A-GCCAAA-CTTTTGTTAAATTCGT-------TAACTA---TTTAGGCA-ATGGTTCTTAAAATA-AGCAACAGCAA-ATGCCAATTGAGTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 06:59 PM