dse_998

CDS [Dsec\GM14145-cds]; exon [dsec_GLEANR_14941:3]; CDS [Dsec\GM14145-cds]; exon [dsec_GLEANR_14941:2]; intron [Dsec\GM14145-in]

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTGCTGAGGACCAGCAACTAGTCGTTGAAGAGAGCAAAAAGGTTAAAAAAGTAAAGAAACCAACTCGGAAAGTTGAAAAGACTGATGTTGAGGAATTGCCAGCAGAGGAAGTTCCACTAGAGAGAAGTTCCAGAAGACGTGGCTCCAGAAGAAGAGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTTAAAAGACCGAAATAGAAAGAGAAGAAGACCAACCAGAAGAGGAAGTTCCACAAGA ************************************************..........((((((((.............)))).)))).((((((.((......)).)))))).........................(((((........))))).................................................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	M054 female body	V115 head	V114 embryo
.............................................................................AAGACCAATGATGAGGAATTG...............................................................................................................................................................................................................................	21	3	1	24.00	24	20	4	0	0
...........................................................................AAAAGACCAATGATGAGGAAT.................................................................................................................................................................................................................................	21	3	4	9.75	39	34	1	4	0
...........................................................................AAAAGACCAATGATGAGGAATT................................................................................................................................................................................................................................	22	3	1	6.00	6	6	0	0	0
............................................................................AAAGACCAATGATGAGGAATT................................................................................................................................................................................................................................	21	3	3	4.33	13	9	2	2	0
...........................................................................AAAAGACCAATGATGAGGAATTG...............................................................................................................................................................................................................................	23	3	1	3.00	3	1	1	1	0
..........................................................................GAAAAGACCAATGATGAGGAAT.................................................................................................................................................................................................................................	22	3	3	2.33	7	6	1	0	0
..........................................................................GAAAAGACCAATGATGAGGAATTG...............................................................................................................................................................................................................................	24	3	1	2.00	2	2	0	0	0
..........................................................................GAAAAGACCAATGATGAGGAA..................................................................................................................................................................................................................................	21	3	7	1.43	10	7	3	0	0
................ACTAGTCGTTGAAGAGAGC..............................................................................................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	1
..........................................................................GAAAAGACCAATGATGAGGAATT................................................................................................................................................................................................................................	23	3	1	1.00	1	1	0	0	0
................................................................................ACTGATGTTGAGGAATTGCC.............................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0
............................................................................AAAGACTAATGATGAGGAATT................................................................................................................................................................................................................................	21	2	1	1.00	1	0	1	0	0
.................................................................................CTGATGTTGAGGAATTGCCAGCAGAGGA....................................................................................................................................................................................................................	28	0	1	1.00	1	1	0	0	0
.......................GTTGAAGAGAGCAAAAAGGTT.....................................................................................................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	1
...................................................................................GATGTTGAGGAATTGCCAGCAGAGG.....................................................................................................................................................................................................................	25	0	1	1.00	1	1	0	0	0
............................................................................AAAGACCAATGATGAGGAATTG...............................................................................................................................................................................................................................	22	3	1	1.00	1	1	0	0	0
..............................AGAGCAAAAAGGTTAAAAAAGTAAAGAAA......................................................................................................................................................................................................................................................................	29	0	1	1.00	1	1	0	0	0
.............................................................................AAGACTAATGATGAGGAATTG...............................................................................................................................................................................................................................	21	2	1	1.00	1	1	0	0	0
............................................................................AAAGACCAATGATGAGGAAT.................................................................................................................................................................................................................................	20	3	13	0.69	9	8	1	0	0
.............................................................................AAGACCAATGATGAGGAATT................................................................................................................................................................................................................................	20	3	9	0.56	5	2	3	0	0
...........................................................................AAAAGACCAATGATGAGGAA..................................................................................................................................................................................................................................	20	3	20	0.35	7	7	0	0	0
..................................................................................TAATGATGAGGAATTGGCAGC..........................................................................................................................................................................................................................	21	3	4	0.25	1	1	0	0	0
............................................................................AAAGACAAATGATGAGGAATT................................................................................................................................................................................................................................	21	3	6	0.17	1	0	1	0	0
...................................................................................................................................................................................................................................................................................AAGCAGAAAGAGAAGAGGACC.........................	21	3	8	0.13	1	0	0	1	0
......................................AAGGTGAAAAAAGTAAAAAAA......................................................................................................................................................................................................................................................................	21	2	11	0.09	1	0	0	1	0
.........................................................................................................................................CGTGGTTCCTGAAGAAGAC.....................................................................................................................................................................	19	3	19	0.05	1	0	1	0	0
..............................................................................AGACCAATGATGAGGAATTGC..............................................................................................................................................................................................................................	21	3	20	0.05	1	1	0	0	0
...........................................................................................................................................................................................................................................................................AAATACCGACATAGAAAGC...................................	19	3	20	0.05	1	0	1	0	0
.................................................GGAAAAGAAACCAACTGGGA............................................................................................................................................................................................................................................................	20	3	20	0.05	1	0	1	0	0
...............................................................................GACCAATGATGAGGAATTG...............................................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0
..................................................................................................................................................................................................................................................................................CAAATAGAGAGGGAAGAAGA...........................	20	3	20	0.05	1	0	1	0	0

GACGACTCCTGGTCGTTGATCAGCAACTTCTCTCGTTTTTCCAATTTTTTCATTTCTTTGGTTGAGCCTTTCAACTTTTCTGACTACAACTCCTTAACGGTCGTCTCCTTCAAGGTGATCTCTCTTCAAGGTCTTCTGCACCGAGGTCTTCTTCTCGGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAAATTTTCTGGCTTTATCTTTCTCTTCTTCTGGTTGGTCTTCTCCTTCAAGGTGTTCT ************************************************..........((((((((.............)))).)))).((((((.((......)).)))))).........................(((((........))))).................................................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V113 male body
.............................................................................TTCTGGTTACTACTCCTTAAC...............................................................................................................................................................................................................................	21	3	1	4.00	4	4	0
............................................................................TTTCTGGTTACTACTCCTTAAC...............................................................................................................................................................................................................................	22	3	1	3.00	3	1	2
............................................................................TTTCTGGTTACTACTCCTTAA................................................................................................................................................................................................................................	21	3	3	2.33	7	7	0
...........................................................................TTTTCTGGTTACTACTCCTTA.................................................................................................................................................................................................................................	21	3	4	1.75	7	5	2
.............................................................................TTCTGGTTACTACTCCTTAA................................................................................................................................................................................................................................	20	3	9	0.33	3	2	1
..........................................................................CTTTTCTGGTTACTACTCCTT..................................................................................................................................................................................................................................	21	3	7	0.29	2	2	0
...........................................ATTTATTCATTTCTTTGAT...................................................................................................................................................................................................................................................................	19	2	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_2:2114676-2114996 -	dse_998	C---TGCTGAGGACCAGCAACTAGTCGT---TGAAGAGAGCAAAAAGGTTAAAAAAGTAAAGAAACCAACTCGGAAAGTT---GAAA---------AGACT-------GATGTTGAGGAAT---------TGCCAGCAGAGGAAGTTCCACTAGAGA--------------GAAGTTCCAGAAGACGTGGCTCCAGAAGAAGAGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTTAAAAGACCGAAATAGAAAGAGAAG---------AAGACCAACCAGAAGAGGAAGTTCC-ACAA---G--------A
droSim2	3l:1987132-1987305 -		C---TGCTGAGGACCAGCAACTAGTCGT---TGAAGAGAGCAAAAAGGTTAAAAAAGTAAAGAAACCAACTCGGAAAGTT---GAAA---------AGACT-------GATGTTGAGGAAT---------TGCCAGCAGAGGAAGTTCCAGCAGAGGAAGTTATAGTTGAGGAAGTTCCAGAAGAGGTGGCTCCAGAAGAA----------------------------------------------------------------------------------------------------------------------------------GAGC----------------------------------------------------CCA
dm3	chr3L:2084023-2084196 -		C---TGCTGAGGACCAGCAACTAGTCGT---TGAAGAGAGCAAAAAGGTTAAAAAAGTAAAGAAACCAACTGGGACAGTT---GAAA---------AGACT-------GATGTTGAGGAAT---------TGCCAGGAGAGGAAGTTCCAGTAGAGGAAGTTCCAGTAGAGGAAGTTCCAGAAGACGTGGCTCCAGAAGAA----------------------------------------------------------------------------------------------------------------------------------GAGC----------------------------------------------------TCA
droEre2	scaffold_4784:2082905-2083059 -		C---TGTTGAGAAGCAGCAATCAGTTGT---TGAAGAAAGCGAAAAGGTTAAAAAAGTAAAGAAACCAACACGAACGGTT---GAAA---------AGCTT-------GATGTCCAGGAAC---------TGCCAGAAGAGGATGTTCCGGAAAAGGAAA---------------TTCCAGT---------------GGAT----------------------------------------------------------------------------------------------------------------------------------GAGCCCA---------TCGAGGAGGAG--------------------------------
droYak3	3L:2042292-2042446 -		C---TGCTGACG---------TTGTTGT---CGAAGAGAGCAAACAGGTTAAAAAGGTAAAGAAACCAACTCGAACAGTT---GAAA---------AGACT-------GATGTTGAGGATC---------TGCCAGTAGAGGAAGTTCCAAA---------------------------------------------AGAT----------------------------------------------------------------------------------------------------------------------------------GAGCCCG---------TCGAGGAGCAGGAGGAGATCGTTGC-CCAA---GAAGA----A
droEug1	scf7180000409091:184379-184517 +		CGATCGTGGAAGATCAAGAAGAGGTTGT---TGAAGAGAAGAAAAAGGTCAAAAAGGCAAAGAAGCCCAAAGCAACCGTT---GAAA---------AGACT-------GATGTTGAAGAAC---------AGCCTGAAGAGGAAATTCCAGA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGCTTA---------TTGAAGA------------------------------------
droBia1	scf7180000302428:8811543-8811709 -		T---TGTTCAGGACCAGGAAGAGGTCGCTGTTGAAGAAAAACGCCGGGTCAGGAAGGTCAAGAAGCCCAAAACAGTGGTT---GAGA---------AGACAG----AAGATGTGGAGGAAC---------AGCCCGAAGATGATATCCCGCA---------------------------------------------GGAA----------------------------------------------------------------------------------------------------------------------------------GAAATCG---------CCGAAACGCAAGAATTGGTCGTGGA-AGAA---AA-------G
droTak1	scf7180000414400:15217-15382 -		CGATCGTGGAAGACCAGGAAGAGGTTGT---TGAAGAGAAGAAGAAGGTCAAGAGGGTAAGGAAGCCCAAACCAACCGTT---GAAA---------AGACT-------GATGTTGAAGAAC---------AGCCTGAGGAAGATATTCCGGA---------------------------------------------GGAG----------------------------------------------------------------------------------------------------------------------------------GAGGCCA---------TTGAAGAGCAAGAAGAGGTTGTAGA-ACAA---GAAG-----A
droEle1	scf7180000491249:3407322-3407484 +		CGGTCGTTCAGGATCAACAAGAGGTTGT---TGAGGAAAAGAAAAAGGTTAAAAAAGTAAAGAAGCCCAAGCAAACCGTT---GAAA---------ATACT-------GCTGTTGAGGAAC---------AGCCTGTAGAGGAAATTCCAGA---------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------------------AGGTCA---------TTGAAGAACCTGAAGAGGTCATCGA-AGAA---CAAG-----A
droRho1	scf7180000779211:14920-15077 -		T---CGTAGAGGA------AGAGGTTGT---TGAAGTGAAGAAGAAGGTCAAAAAAGTAAAGAAACCAAAGCAACCCGTT---GAAA---------AGACT-------GATGTTGAAGAAC---------AGCTTGTAGAGGAAATTCCAGA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGGTCA---------TCGACGAGCTAGAAGAGATCGTAGA-ACAA---GAAGA----A
droFic1	scf7180000453052:971953-972091 +		CACTCGACGAAGTGCAAGAAGAAGTTTT---GGAGGAGACGAAAAAGGTCAAAAAGGTTAAAAAACCCAAATTAACCGTT---GAAA---------AGACT-------GATGTTCAAGAAC---------AGCCACAAGAGGATATTCCAGA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGATCA---------TCGAAGA------------------------------------
droKik1	scf7180000302441:1719388-1719567 +		CGATTGTTGAAGAGCAACAAGAAGTTAT---TGAGGAGAAGAAAAAGGTCAAGAAGGTTAAAAAGCCCAAACCAACCGTT---GAAA---------AGACT-------GATGTCGAGGAACT---GGAACAGCCTGAAGAGGAGGTCCCAGAAGAGCAG---------------------------------------GTA----------------------------------------------------------------------------------------------------------------------------------GAGATTA---------CTGAAGAACAAGAAGAAGTCGTTGA-AGAA---AAGC---GCA
droAna3	scaffold_13337:741697-741843 +		C---CACGGAGGATCA------AATTGT---GGACGTAACCAAGAAGCGTGTTAAGAAAAAGAAACCAAAG------------GCAA---------AGACT-------CCTACAGAAGAATCGTTTGAGGAGCCTGTGGAAGATGT------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------GAAGAAT------TTGAAGACA----CGCAGCCTCAGCCAGATGAA------GAG---C
droBip1	scf7180000395155:15004-15130 -		C---CTTGGAA------ACAGAAGTTGT---GGAAGAGAAGCGCAAAACAAAGAAGGTCAAGAAACCTAAGAAGAAGGTG---GTAA---------CGGAA-------GAGGAACAGGAAG---------AACAACTGGAAGAACAACCAGA---------------------------------------------AGA-------------------------------------------------------------------------------------------------------------------------------------GGTGG---------AAGAGC------------------------------------C
dp5	XR_group6:11993039-11993215 -		T---CGTAGAAGAACGAGCAGAGATCGT---GGAAGAAAAGAAAAAGGTGAAAAAGGTCAGGAAACCCAAGAGTAAGGTA---ACCG---------TAGAA-CAAGAAGCCGAAGAAGAAC---------AACCCGCAGAAGAGGTTGAAGA---------------------------------------------ACCA----------------------------------------------------------------------------------------------------------------------------------GAAGTGGAAGAACCCATCGCTGAAGA----ACCTCTTCCCGTAGAA------GAACCCA
droPer2	scaffold_33:11021-11152 -		C---TG--GAAGAGCAGGAGGATATCGT---AGAAGAAAAGAAAAAGGTCAAAAAGATCAAGAAACCAAAGAAAATTGTT---GAAA---------AGACT-------GAA---------------------------GAGGAGGTTCCTGAAGAGGAG---------------GTTCCCGA---------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGACTG---------TCGCAGA-----------------------------------A
droWil2	scf2_1100000004729:1310300-1310456 +		T---GATTGAGGATCAAGAAGAGATAGT---TGAAGAAAAACGCAAAATCAAGAAAGTTAAGAAACCAAAACAACCTAAG---GAGT---------TGACT----------GAAGAGGAAC---------AGCCCGAAGAGGAAATTCCAGA---------------------------------------------AGAG----------------------------------------------------------------------------------------------------------------------------------GAAGTCG---------TTGAGCA---AGAAGAAGTGGTCGA-AGAACAAG--------A
droVir3	scaffold_13049:12024708-12024843 +		A---TGTGGAAGAACAGGAAGAGATTGT---TGAAGAAAAACGTAAGATCAAGAAGGTTAAGAAACCCAAAATACCAGCTCTCGCTC---------AGAAA-------CAAATT---GAGC---------AATCTGAAGAGGAGGCTCCACA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAAACCC---------CTGAGGA------------------------------------
droMoj3	scaffold_6680:8795943-8796091 -		T---TGAAGAAGAAGAGGAAGTAATAGT---GGAAGAAAAGCGTAAAATAAAGAAGGCAAAGAAACCAAAGAAAACTGTT---GAAGTAACTGAGGAGCCAG-------AAGAGCCGGAAG---------AGCCAACGGAAGACATTCCAGA---------------------------------------------AGAG----------------------------------------------------------------------------------------------------------------------------------GAAGTTG---------TCCAGGAGCAG--------------------------------
droGri2	scaffold_15110:11465005-11465156 +		T---TGTTGAAGAGCAAGAAGATATTGT---TGAAGAAAAGCGTAAGGTAAAGAAAACAAAGAAACCCAAGAAGCCCGTA---GAA----------------------------CTGGAAC---------AGGCTACAGAAGACATTCCACA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGCTCA---------TTGAAGAGCAGGAAGAAATTGTCGA-GGAG---AAGCG----C

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

C---TGCTGAGGACCAGCAACTAGTCGT---TGAAGAGAGCAAAAAGGTTAAAAAAGTAAAGAAACCAACTCGGAAAGTT---GAAA---------AGACT-------GATGTTGAGGAAT---------TGCCAGCAGAGGAAGTTCCACTAGAGA--------------GAAGTTCCAGAAGACGTGGCTCCAGAAGAAGAGCCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTATTTAAAAGACCGAAATAGAAAGAGAAG---------AAGACCAACCAGAAGAGGAAGTTCC-ACAA---G--------A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................ACTAGTCGT---TGAAGAGAGC.............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..................................................................................................ACT-------GATGTTGAGGAAT---------TGCC................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0
...................................................................................................CT-------GATGTTGAGGAAT---------TGCCAGCAGAGGA.......................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0
..........................GT---TGAAGAGAGCAAAAAGGTT....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
............................................................................................................GATGTTGAGGAAT---------TGCCAGCAGAGG........................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
....................................AGAGCAAAAAGGTTAAAAAAGTAAAGAAA.....................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0

droSim2

C---TGCTGAGGACCAGCAACTAGTCGT---TGAAGAGAGCAAAAAGGTTAAAAAAGTAAAGAAACCAACTCGGAAAGTT---GAAA---------AGACT-------GATGTTGAGGAAT---------TGCCAGCAGAGGAAGTTCCAGCAGAGGAAGTTATAGTTGAGGAAGTTCCAGAAGAGGTGGCTCCAGAAGAA----------------------------------------------------------------------------------------------------------------------------------GAGC----------------------------------------------------CCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........................................................................GGAAAGTT---GAAA---------AGA...................................................................................................................................................................................................................................................................................................	15	2	73.00	146	0	0	0	0	0	0	11	52	58	24	1	0	0	0	0	0	0
........................................................................GGAAAGTT---GAAA---------AGAA..................................................................................................................................................................................................................................................................................................	16	16	2.94	47	0	0	0	0	0	0	2	7	27	10	1	0	0	0	0	0	0
............................................................................AGTT---GAAA---------AGACT-------GATGTTGAGG................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................AACTAGTCGT---TGAAGAGA...............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................T---GAAA---------AGACT-------GATGTTGAGGAAT---------TGCC................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

dm3

C---TGCTGAGGACCAGCAACTAGTCGT---TGAAGAGAGCAAAAAGGTTAAAAAAGTAAAGAAACCAACTGGGACAGTT---GAAA---------AGACT-------GATGTTGAGGAAT---------TGCCAGGAGAGGAAGTTCCAGTAGAGGAAGTTCCAGTAGAGGAAGTTCCAGAAGACGTGGCTCCAGAAGAA----------------------------------------------------------------------------------------------------------------------------------GAGC----------------------------------------------------TCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................GAAGAGAGCAAAAAGGTTAAAA................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................CCAGAAGACGTGGCTCCAGAAGAA----------------------------------------------------------------------------------------------------------------------------------GA.........................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCCAGTAGAGGAAGTTCCA..................................................................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................ACTAGTCGT---TGAAGAGAGCAAAAAGG......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................TCGT---TGAAGAGAGCAAAAA........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................GAAA---------AGACT-------GATGTTGAGGAAT---------TGCC................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AGACGTGGCTCCAGAAGAA----------------------------------------------------------------------------------------------------------------------------------TC.........................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....GCTGAGGACCAGCAACTAGTCGT---TGAAG..................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCCAGTAGAGGAAGTTCCA.................................................................................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................T-------GATGTTGAGGAAT---------TGCC................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AGAGGAAGTTCCAGTAGAGG..........................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AGAGGAAGTTCCAGTAGAGG.........................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AGAGGAAGTTCCAGTAGAGGAAG......................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................AGAGGAAGTTCCAGTAGAGGAAG.......................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................AAAGAAACCAACTGGGAG..........................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

C---TGTTGAGAAGCAGCAATCAGTTGT---TGAAGAAAGCGAAAAGGTTAAAAAAGTAAAGAAACCAACACGAACGGTT---GAAA---------AGCTT-------GATGTCCAGGAAC---------TGCCAGAAGAGGATGTTCCGGAAAAGGAAA---------------TTCCAGT---------------GGAT----------------------------------------------------------------------------------------------------------------------------------GAGCCCA---------TCGAGGAGGAG--------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................ATCAGTTGT---TGAAGAAAGC.............................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2	0
..........................GT---TGAAGAAAGCGAAAAGGT.....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..................AATCAGTTGT---TGAAGAAAGCGAA..........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
................................................TTAAAAAAGTAAAGAAACCAACACG.............................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................GCCAGAAGAGGATGTTCCGGAAA............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................AC---------TGCCAGAAGAGGATGTTCCGGAAA............................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
................................................................................................AGCTT-------GATGTCCAGGAAC---------TGCCAGAA............................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................AC---------TGCCAGAAGAGGATGTTCC.................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................TGCCAGAAGAGGATGTTCCG................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................GAAAAGGAAA---------------TTCCAGT---------------GGAT----------------------------------------------------------------------------------------------------------------------------------GAGCCC.....................................................	27	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................GAAGAGGATGTTCCGGAAAAGGA........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0

droYak3

C---TGCTGACG---------TTGTTGT---CGAAGAGAGCAAACAGGTTAAAAAGGTAAAGAAACCAACTCGAACAGTT---GAAA---------AGACT-------GATGTTGAGGATC---------TGCCAGTAGAGGAAGTTCCAAA---------------------------------------------AGAT----------------------------------------------------------------------------------------------------------------------------------GAGCCCG---------TCGAGGAGCAGGAGGAGATCGTTGC-CCAA---GAAGA----A	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................AA---------------------------------------------AGAT----------------------------------------------------------------------------------------------------------------------------------GAGCCCG---------TCGAGGAGCAG................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................GTAGAGGAAGTTCCAAA---------------------------------------------AGAT----------------------------------------------------------------------------------------------------------------------------------GAGCC......................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................TGAGGATC---------TGCCAGTAGAGGAA......................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................GTT---GAAA---------AGACT-------GATGTTGAGGATC---------TGCC................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................GAT----------------------------------------------------------------------------------------------------------------------------------GAGCCCG---------TCGAGGAGCA.................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................GATGTTGAGGATC---------TGCCAGTAGAGGAA......................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................GATGTTGAGGATC---------TGCCAGT.............................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................ATGTTGAGGATC---------TGCCAGTAGAG.........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................AGTT---GAAA---------AGACT-------GATGTTGAG.................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CGATCGTGGAAGATCAAGAAGAGGTTGT---TGAAGAGAAGAAAAAGGTCAAAAAGGCAAAGAAGCCCAAAGCAACCGTT---GAAA---------AGACT-------GATGTTGAAGAAC---------AGCCTGAAGAGGAAATTCCAGA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGCTTA---------TTGAAGA------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T---TGTTCAGGACCAGGAAGAGGTCGCTGTTGAAGAAAAACGCCGGGTCAGGAAGGTCAAGAAGCCCAAAACAGTGGTT---GAGA---------AGACAG----AAGATGTGGAGGAAC---------AGCCCGAAGATGATATCCCGCA---------------------------------------------GGAA----------------------------------------------------------------------------------------------------------------------------------GAAATCG---------CCGAAACGCAAGAATTGGTCGTGGA-AGAA---AA-------G	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGATCGTGGAAGACCAGGAAGAGGTTGT---TGAAGAGAAGAAGAAGGTCAAGAGGGTAAGGAAGCCCAAACCAACCGTT---GAAA---------AGACT-------GATGTTGAAGAAC---------AGCCTGAGGAAGATATTCCGGA---------------------------------------------GGAG----------------------------------------------------------------------------------------------------------------------------------GAGGCCA---------TTGAAGAGCAAGAAGAGGTTGTAGA-ACAA---GAAG-----A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CGGTCGTTCAGGATCAACAAGAGGTTGT---TGAGGAAAAGAAAAAGGTTAAAAAAGTAAAGAAGCCCAAGCAAACCGTT---GAAA---------ATACT-------GCTGTTGAGGAAC---------AGCCTGTAGAGGAAATTCCAGA---------------------------------------------AG-------------------------------------------------------------------------------------------------------------------------------------AGGTCA---------TTGAAGAACCTGAAGAGGTCATCGA-AGAA---CAAG-----A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T---CGTAGAGGA------AGAGGTTGT---TGAAGTGAAGAAGAAGGTCAAAAAAGTAAAGAAACCAAAGCAACCCGTT---GAAA---------AGACT-------GATGTTGAAGAAC---------AGCTTGTAGAGGAAATTCCAGA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGGTCA---------TCGACGAGCTAGAAGAGATCGTAGA-ACAA---GAAGA----A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CACTCGACGAAGTGCAAGAAGAAGTTTT---GGAGGAGACGAAAAAGGTCAAAAAGGTTAAAAAACCCAAATTAACCGTT---GAAA---------AGACT-------GATGTTCAAGAAC---------AGCCACAAGAGGATATTCCAGA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGATCA---------TCGAAGA------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGATTGTTGAAGAGCAACAAGAAGTTAT---TGAGGAGAAGAAAAAGGTCAAGAAGGTTAAAAAGCCCAAACCAACCGTT---GAAA---------AGACT-------GATGTCGAGGAACT---GGAACAGCCTGAAGAGGAGGTCCCAGAAGAGCAG---------------------------------------GTA----------------------------------------------------------------------------------------------------------------------------------GAGATTA---------CTGAAGAACAAGAAGAAGTCGTTGA-AGAA---AAGC---GCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

C---CACGGAGGATCA------AATTGT---GGACGTAACCAAGAAGCGTGTTAAGAAAAAGAAACCAAAG------------GCAA---------AGACT-------CCTACAGAAGAATCGTTTGAGGAGCCTGTGGAAGATGT------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------GAAGAAT------TTGAAGACA----CGCAGCCTCAGCCAGATGAA------GAG---C	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................................TTGAAGACA----CGCAGCCTCAGCC....................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................AGCCTGTGGAAGATGT------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------GAAGAAT------..............................................	24	1	1.00	1	0	1	0	0	0	0
..................................................GTTAAGAAAAAGAAACCAAAG------------GC.................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................CGTTTGAGGAGCCTGTGGA..........................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................CGTTTGAGGAGCCTGTGGAAG........................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................................................................................GAAGAATCGTTTGAGGAGCCTGT.............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
........................................................AAAAAGAAACCAAAG------------GCAA---------AGACT-------C.........................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................AGCCTGTGGAAGATGT------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------GAAGAAT------T.............................................	25	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TGAAGACA----CGCAGCCTCAGCCA...................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................CTACAGAAGAATCGTTTGAGG....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droBip1

C---CTTGGAA------ACAGAAGTTGT---GGAAGAGAAGCGCAAAACAAAGAAGGTCAAGAAACCTAAGAAGAAGGTG---GTAA---------CGGAA-------GAGGAACAGGAAG---------AACAACTGGAAGAACAACCAGA---------------------------------------------AGA-------------------------------------------------------------------------------------------------------------------------------------GGTGG---------AAGAGC------------------------------------C	Size	Hit Count	Total Norm	Total
No Reads

dp5

T---CGTAGAAGAACGAGCAGAGATCGT---GGAAGAAAAGAAAAAGGTGAAAAAGGTCAGGAAACCCAAGAGTAAGGTA---ACCG---------TAGAA-CAAGAAGCCGAAGAAGAAC---------AACCCGCAGAAGAGGTTGAAGA---------------------------------------------ACCA----------------------------------------------------------------------------------------------------------------------------------GAAGTGGAAGAACCCATCGCTGAAGA----ACCTCTTCCCGTAGAA------GAACCCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................CGAAGAAGAAC---------AACCCGCAGAAGAGGA....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................TCGCTGAAGA----ACCTCTTCCC...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................CG---------TAGAA-CAAGAAGCCGAAG...................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................GTTGAAGA---------------------------------------------ACCA----------------------------------------------------------------------------------------------------------------------------------GAAGTGGAAGAAC..............................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................CGAAGAAGAAC---------AACCCGCAGAAGAG......................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................GTTGAAGA---------------------------------------------ACCA----------------------------------------------------------------------------------------------------------------------------------GAAGTGGAAGAACCC............................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........GAACGAGCAGAGATCGT---GGAAGAAAAG.............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AAGAACCCATCGCTGAAGA----AC...........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................AGAA-CAAGAAGCCGAAGAAGAAC---------A...................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................AAGGTCAGGAAACCCAAGA..............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....GTAGAAGAACGAGCAGAGATC............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................GTTGAAGA---------------------------------------------ACCA----------------------------------------------------------------------------------------------------------------------------------GAAGTGGAA..................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................A-CAAGAAGCCGAAGAAGAA..............................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	1	0

droPer2

C---TG--GAAGAGCAGGAGGATATCGT---AGAAGAAAAGAAAAAGGTCAAAAAGATCAAGAAACCAAAGAAAATTGTT---GAAA---------AGACT-------GAA---------------------------GAGGAGGTTCCTGAAGAGGAG---------------GTTCCCGA---------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGACTG---------TCGCAGA-----------------------------------A	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................CCCGA---------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGACTG---------TC.........................................	18	2	1.50	3	3	0	0	0	0	0
...........GAGCAGGAGGATATCGT---AGAA...................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1

droWil2

T---GATTGAGGATCAAGAAGAGATAGT---TGAAGAAAAACGCAAAATCAAGAAAGTTAAGAAACCAAAACAACCTAAG---GAGT---------TGACT----------GAAGAGGAAC---------AGCCCGAAGAGGAAATTCCAGA---------------------------------------------AGAG----------------------------------------------------------------------------------------------------------------------------------GAAGTCG---------TTGAGCA---AGAAGAAGTGGTCGA-AGAACAAG--------A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................AG---GAGT---------TGACT----------GAAGAGGAAC---------AGCC................................................................................................................................................................................................................................................................	25	1	3.00	3	3	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................AGAAGTGGTCGA-AGAACAAG--------A	21	1	2.00	2	2	0	0	0	0
..........................................................TAAGAAACCAAAACAACCTAAG---GAGT---------......................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	2	0
................................................................................................TGACT----------GAAGAGGAAC---------AGCC................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................TGAGCA---AGAAGAAGTGGTC....................	19	1	1.00	1	0	0	0	0	1
...............................................................AACCAAAACAACCTAAG---GAGT---------T.....................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
.....................................................................................................................GAAC---------AGCCCGAAGAGGAA......................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................AGAAGTGGTCGA-AGAACAAG--------.	20	1	1.00	1	1	0	0	0	0
..........................................................................CCTAAG---GAGT---------TGACT----------GAAGAGG................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
..................AAGAGATAGT---TGAAGAAAAACGCA.........................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.........................................................................ACCTAAG---GAGT---------TGACT----------GAAGAG.................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
................................................................................................TGACT----------GAAGAGGAAC---------AGC.................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
....................................................................................................................................................CAGA---------------------------------------------AGAG----------------------------------------------------------------------------------------------------------------------------------GAAGTCG---------TTGAGC.....................................	21	1	1.00	1	0	0	0	1	0
....................................................................................AGT---------TGACT----------GAAGAGGAAC---------A...................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
............................................................................TAAG---GAGT---------TGACT----------GAAGAGGAAC---------AGCC................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
....................................................................................................T----------GAAGAGGAAC---------AGCCCGAAG...........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
................................................................................................................................................ATTCCAGA---------------------------------------------AGAG----------------------------------------------------------------------------------------------------------------------------------GAAGTCG---------TTGAG......................................	24	1	1.00	1	0	1	0	0	0

droVir3

A---TGTGGAAGAACAGGAAGAGATTGT---TGAAGAAAAACGTAAGATCAAGAAGGTTAAGAAACCCAAAATACCAGCTCTCGCTC---------AGAAA-------CAAATT---GAGC---------AATCTGAAGAGGAGGCTCCACA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAAACCC---------CTGAGGA------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................GAGC---------AATCTGAAGAGGAGG.....................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................GAGC---------AATCTGAAGAGGAGGCT...................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................AACCCAAAATACCAGCTCTCG..................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
A---TGTGGAAGAACAGGAAGA................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................CGTAAGATCAAGAAGGTTAAGA.......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................GATCAAGAAGGTTAAGAAACC...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................AAATT---GAGC---------AATCTGAAGAG.........................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................GTAAGATCAAGAAGGTTAAGAA......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................AATCTGAAGAGGAGGCTC..................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................AAGAGGAGGCTCCACA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAAACC.....................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................AGAGGAGGCTCCACA---------------------------------------------AGA..............................................................................................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................TGAAGAGGAGGCTCCACA---------------------------------------------A................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T---TGAAGAAGAAGAGGAAGTAATAGT---GGAAGAAAAGCGTAAAATAAAGAAGGCAAAGAAACCAAAGAAAACTGTT---GAAGTAACTGAGGAGCCAG-------AAGAGCCGGAAG---------AGCCAACGGAAGACATTCCAGA---------------------------------------------AGAG----------------------------------------------------------------------------------------------------------------------------------GAAGTTG---------TCCAGGAGCAG--------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................GCCGGAAG---------AGCCAACGGAA.........................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........................................................................AACTGTT---GAAGTAACTGAGGAGCC..................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1

droGri2

T---TGTTGAAGAGCAAGAAGATATTGT---TGAAGAAAAGCGTAAGGTAAAGAAAACAAAGAAACCCAAGAAGCCCGTA---GAA----------------------------CTGGAAC---------AGGCTACAGAAGACATTCCACA---------------------------------------------AGAA----------------------------------------------------------------------------------------------------------------------------------GAGCTCA---------TTGAAGAGCAGGAAGAAATTGTCGA-GGAG---AAGCG----C	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dse_998

scaffold_2:2114726-2114946 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-20.3	-20.2	-20.2