ID:

dse_994

 Coordinate:

scaffold_2:1746188-1746365 -

 Confidence:

confident

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.9 -34.8 -34.4

Flybase annnotation

intron [Dsec\GM14179-in]; CDS [Dsec\GM14179-cds]; CDS [Dsec\GM14179-cds]

No Repeatable elements found

Sense Strand Reads

CACCACGTGTCCGGCGAATGCCAGTGTGCGCCCGGTTTCACGGGTCCCCTGTAAGTGAACGGAGGGGCGTCTTTGGCGGCACAAGCTTCTGGCCGAGGATTGGGATTAAAATGAATCGTAGAATGCAATCAATATTTTTCGTGGCTGTGATCTAAGGCCGTTGCATCCTACGTTTCATTTTGCTCCTGCTCCAACGCAAAACCCATACTAATACTCCGCTCCAACTAGATGCGATATGCGATGTCCGGACGGAAAGCATGGCGCCCAGTGCCAGCAGG

*****************************************************************************************.......(((.(((((.(((((((((.(((((.(((((((.............((((.........))))))))))).))))).))))))))).))))).)))..************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V114

embryo

 M054

female body

 V113

male body		 V115

head
........................................................................................................ATTAAAATGAATCGTAGAATGC........................................................................................................................................................ 22 0 1 21.00 21 9 3 6 3
.........................................................................................................TTAAAATGAATCGTAGAATGCA....................................................................................................................................................... 22 0 1 8.00 8 1 3 4 0
........................................................................................................ATTAAAATGAATCGTAGAATGCA....................................................................................................................................................... 23 0 1 3.00 3 1 2 0 0
.........................................................................................................TTAAAATGAATCGTAGAATGC........................................................................................................................................................ 21 0 1 2.00 2 0 0 0 2
.............................................................................................................................................................CCGTTGCATCCTACGTTTCATT................................................................................................... 22 0 1 2.00 2 0 2 0 0
.......................................................................................................GATTAAAATGAATCGTAGAATG......................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0
.............................................................................................................................................................CCGTTGCATCCTACGTTTCAT.................................................................................................... 21 0 1 1.00 1 0 0 1 0
...............................................................................................................TGAATCGTAGAATGCAATCAAT................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0
.............................................................................................................................................................................................................................................GCGATGTCCGGACGGAAAGCATGGCG............... 26 0 1 1.00 1 0 0 1 0
...CACGTGTCCGGCGAATGC................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0
........................................................................................................ATTAAAATGAATAGTAGAATGC........................................................................................................................................................ 22 1 1 1.00 1 1 0 0 0
.....................................................AGTGAACGTAGGGGGGCCT.............................................................................................................................................................................................................. 19 3 6 0.17 1 0 0 0 1

Anti-sense strand reads

GTGGTGCACAGGCCGCTTACGGTCACACGCGGGCCAAAGTGCCCAGGGGACATTCACTTGCCTCCCCGCAGAAACCGCCGTGTTCGAAGACCGGCTCCTAACCCTAATTTTACTTAGCATCTTACGTTAGTTATAAAAAGCACCGACACTAGATTCCGGCAACGTAGGATGCAAAGTAAAACGAGGACGAGGTTGCGTTTTGGGTATGATTATGAGGCGAGGTTGATCTACGCTATACGCTACAGGCCTGCCTTTCGTACCGCGGGTCACGGTCGTCC

************************************************************************************.......(((.(((((.(((((((((.(((((.(((((((.............((((.........))))))))))).))))).))))))))).))))).)))..***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V115

head

 V113

male body		 M054

female body
...........................................................................................................................................................................................CGATATTGCGTTTTGGGTATGAG.................................................................... 23 3 1 1.00 1 1 0 0
..............................................................................................................................................................................................TATTGCGTTTTGGGTATGA..................................................................... 19 2 2 0.50 1 0 1 0
.............................................................................................................................................................................................ATATTGCGTTTTGGGTATGAGT................................................................... 22 3 3 0.33 1 0 1 0
................................................................................................................GTTAGCTTCTTACGTTAGTTC................................................................................................................................................. 21 3 4 0.25 1 0 0 1
.............................................................................................................................................................................................ATATTGCGTTTTGGGTATGAG.................................................................... 21 3 5 0.20 1 0 0 1
................TTACGGTAAGACGCGGGTCA.................................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 0 1
..............................................................................................................TAGTTAGCTTCTTTCGTTAGT................................................................................................................................................... 21 3 9 0.11 1 0 0 1
.................................................................................................................TTAGCTTCTTTCGTTAGTT.................................................................................................................................................. 19 2 15 0.07 1 0 0 1
...................................................................................................................................................................GTAGGAGGCAAAGTTAAA................................................................................................. 18 2 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droSec2 scaffold_2:1746138-1746415 - dse_994 confident CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCGCCCGGTTTCACGGGTCCCCTGTAAGTGAAC-------------GG-------AGG-GGCGTC--TTT-----GGCGGCACAAGCTTCTGGCC--GAGGATTG-GGATT----AAAATGAATCGTAGAATGCAATC-------------AA-------------------------T-ATTTTTCGTGGCTGTGA-------TCTAAGGCCGTTGCATCCTACGTTTCATTTT-GCTCCTGCT-------------------------------CCAACGCAAA-ACCCATACT-A-ATACTCCGCTC---------C-----------AACTAGATGCGATATGCGATGTCCGGACGGAAAGCATGGCGCCCAGTGCCA-----------------------------------------GCAGG
droSim2 3l:1629569-1629846 - dsi_4243 candidate-rescued CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCGCCCGGTTTCACGGGTCCCCTGTAAGTGGAC-------------GG-------GGA-GGCGTC--TTT-----GGCGGCACAAGCTTCTGGCC--GAGGATTA-GGATT----AAAATGAATCGTAGAATGCAATC-------------AA-------------------------T-ATTTTTCGTGGCTGTGA-------TCTAAGGCCGTTGCATCCTACGTTTCATTTT-GCTCCTGCT-------------------------------CCAACGCAAA-ACCCATACT-A-ATACTCCGCTC---------C-----------AACTAGATGCGATATGCGATGTCCGGACGGAAAGCATGGCGCCCAGTGCCA-----------------------------------------GCAGG
dm3 chr3L:1719696-1719972 - dme_418 confident CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCTCCCGGTTTCACGGGTCCCCTGTAAGTGGAC-------------GA-------AGG-GGCCTC--TTT-----GGCGGCACAAACTTCTGGCC--GAGGATCA-GG--C----AAAATGAAAGGCAGAATGCAATC-------------AA-------------------------TTATTTTTCGTGGCTGGGA-------TTTTAGGCCGTTGCATTCTACGTTTCATTTT-GCTCCTGCT-------------------------------CCAACGCAAA-ACCCATACT-A-ATACTCCGCTC---------C-----------AACTAGATGTGATATGCGCTGTCCGGATGGAAAGCATGGCGCCCAGTGCCA-----------------------------------------GCAGG
droEre2 scaffold_4784:1702664-1702939 - der_1510 candidate CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCGCCTGGCTTCACGGGTCCCCTGTAAGTGGAC-------------GA-------AGG-AGCCTC--TTT-----GGCGGCGTTAACTTCTGGCG--GAGGACCG-GG--C----AAAATGAAACGTAGAATGCAATG-------------CA-------------------------T-ATTTTCTGTAGCTGCAA-------TTTGAAGCCGTTGCATCCTGCGACTCATTTT-ACTCCTGCT-------------------------------CCAACGCAAA-ACCCATACT-A-ATCCTCCGCTT---------C-----------AACTAGATGCGATATGCGCTGTCCGGACGGGAAACACGGCGCCCAGTGCCA-----------------------------------------GCAGG
droYak3 3L:1671764-1672002 - dya_668 candidate-rescued CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCGCCTGGTTTCACGGGTCCCCTGTAAGTGGA-------------------------------------------------------------------GGATCA-GG--C----AAAATGAAACGTAGAATGCAACG-------------CA-------------------------T-ACTTATCGTGGCTGTGA-------TTTCAAGCCGTTGCATCCTGCGGTTCATTTT-ACTCCTGCT-------------------------------CCAACGCAAA-ACCCATACT-A-ATCCTCCGCTC---------C-----------AACTAGATGCGATATGCGCTGTCCGGACGGGAAGCATGGCGCCCAGTGCCA-----------------------------------------ACAGG
droEug1 scf7180000407756:39346-39641 - CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGTGAATGCCAGTGTGCGCCTGGTTTCACAGGTCCCTTGTAAGTGGAC-------------GAAATGTGA-GG-AGCCTC--TTG-----GGCGGCATAACCCTATCGCT--GAC-ATCATAC--G----AAAACTAAACGTAGAATGCC-----------TTGGGAG-------------------------T-GTAATA-------ATGATTCTTATTCTTAAACCAATGCATCCTACGATTAGTTTT-TCTCCTGCG------AGTTAGGTTATG-------------CCACCCTCAA-AACAATACT-A-ATCCTCCGCTT---------C-----------AACTAGATGCGATATGCACTGCCCGGACGGGAAACATGGCGCCCAGTGCCA-----------------------------------------GCAGG
droBia1 scf7180000302428:8410899-8411052 - AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGATTTGTAAAAGGGC-----------TAAAAAA-------------------------T-ACTCTC-------GCGA-------TT------CTTGGCATTCTACGGGTAATTTT-GCTCCTC--------------------------C------------CAAGACCCTCTACT-A-ATCCTCCGCTC---------C-----------AACTAGATGCGACATGCGCTGTCCGGACGGGAAACATGGCGCCCAGTGCCA-----------------------------------------GCAGG
droTak1 scf7180000415095:40028-40153 + AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATTACATTCTACGTTTAATTTT-GCCCCCGA-----------------------------GATCCCCTG-ATA-CCCCGTACT-A-ATGCTCCGCTC---------C-----------AACTAGATGCGACATGCGCTGTCCGGACGGGAAGCATGGCGCCCAGTGCCA-----------------------------------------GCAGG
droEle1 scf7180000491249:3840643-3840868 + CACCACATCAGCGGAAAGTGCGAGTGTCCGCCGGGATACTTGGGAGAGCGCTGCTTCGACGAGTGTCCGCTGAACACGTACGGATTCAATTGCAGCATGACCTGCGACTGCGAGAACGATGCCACCTGCGATCGCGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGGATCCTGCATCTGCAATCCC---GGCTGGCGGGGGGCCAAGTGTGAGGAGAGGATTTGCGAGGCGGACAAGTATGGGTTGGACTGCA-----
droRho1 scf7180000776850:217126-217435 + CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCACCTGGTTTCACGGGTCCTCTGTAAGTGGAC-------------GGAATGAGA-GG-AGTGTC--TTT----CGGTGACATCATCGAATGGCA--CAGGATCACGG--C----AAAATTAAACGCAGATTGCATTG-------------AATCAAGCAAG------TTAATTA--AG----------------GTTTTTTATA-CTAAATTACTGCATCCTACGATTGATTTT-GCTGCTTTCCTTGAGCTCTCCGATATGT-------------CACCCCAAA-AACCCTACT-A-ATCCTCCGCTC---------C-----------AACTAGATGCGACATGCGCTGTCCGGATGGCAAACATGGCGCCCAGTGCCA-----------------------------------------GCAGG
droFic1 scf7180000454113:356473-356728 + CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAGTGCCAGTGTGCGCCCGGTTTTACGGGTCCTCTGTAAGTGGAC-------------GGAATGCGA-GGAGGCGCC--TTT----------------------------AGGAGTT-GGGCT----GAAGTTAAGCGTAGGATGCAACCTGAAACTGTTG--AA-------------------------G-----------------G-------TTTTTGGCCACTGCATCCTACGCTTAACTTT-GACCCCA--------------------------C-A-GAACCC---------CTCTAACTTAACTCTAACGCCC---------C-----------AACTAGATGCGACATGCGCTGTCCGGACGGCAAGCACGGCGCCCAGTGCCA-----------------------------------------GCAGG
droKik1 scf7180000302577:200384-200696 - CACCATGT---------------------------------------------------------------------------------------------------------------------------------CTCCGGCGAGTGCCAGTGTGCGCCCGGCTTTACGGGTCCCCTGTAAGTGGG--------------AA-----GA-GG-AGCTGCCTCTTGCCTCGGAGACATATCATT-TCGCCTTGAGGTTTACGA--C----AAAATGAATCGTAGATTTCT-----------TA-----CTATGCATGCCACATTTTATTA--AT-------------------------TTTTTTACCCCTGCAATCTACGATTCACTTT-GTT-TG-CCCCGTGGCGCTTTGCCAAGTCTCCTTCC----CACCCACCGA-ATCCCTACT-A-ATCCTACGCTC---------C-----------AAATAGATGCGACATGCGCTGTCCGGACGGCAAGCACGGCGCCCAGTGCCA-----------------------------------------GCAGG
droAna3 scaffold_13337:1119407-1119716 + CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAGTGCACCTGTGCGCCGGGCTTCACGGGTCCGCTGTAAGTGCGG-------------GA-----GA-GGATGATTC--TTT-----CACGCAAAAGGGTCATGGCATAGAGGCCAG-GGGTCATGGAGAGTTGCCCGTAGATGCCC-----------TT-----CCATT----TTTCATTT--TTACACAC-----------------CTTT--------TAGT-TTGC-GACTACGGTGAACTTTTCTA-TGACCCCGGGGCTGTATGCTTGATTTCCCTCA-A----AGCCCCAA-TCTCCGACT-A-ATCCTTCGCTT---------CA----------AACTAGATGCGACATGCACTGCCCGGACGGGAAGCACGGGGCTCAGTGCCA-----------------------------------------GCAAG
droBip1 scf7180000396371:1451505-1451819 + CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAGTGCACCTGTGCACCGGGCTTCACGGGTCCGCTGTAAGTGCGG-------------GA-----GA-GGATGATTCGTTTT-----GACGCAAAAGGAACATGGCATAGAGTCCAG-GGTTTATAGAGAGTTATCCGTAGATATCC-----------TT-----CCATT----TTTCATTTGATTACAAAA-----------------GTTT--------TAGT-TTAA-AAGTACGGAGACATTTTCTA-TGACCCCGGGGCTGTATGCTTTGTTTACCCCAAA----AGCCCCAA-TCTCCGACT-A-ATCCTCCGCTT---------CA----------AACTAGATGCGACATGCGCTGCCCGGACGGAAAGCACGGGGCGCAGTGCCA-----------------------------------------GCAAG
dp5 XR_group6:13159287-13159590 + GAGCCCTTCAGCGGGGAGTGCGAGTGCGCCAAGGGCTATACGGGCGCCAGGTGCGCCGATGTCTGTCCGGAGGGGCGCTTTGGCGCCAGCTGCTTGGAGGAGTGCCGCTGTGAGAACGGTGGCAAGTGCCATCACGTCTCGGGCGAGTGCTCCTGTGCGCCCGGGTTCACGGGTCCCCTGTAAGTGACCGCCAGATCGTGGCA---------------------------------------------------------------------AGA-GAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CCGAGAG-CCCCATACT-A-ATCTCCCCTTCGCCCCCTCCC-----------AATCAGATGCGATATGCGCTGTCCGGACGGAAAGCACGGGGCACAGTGCCA-----------------------------------------GCAGG
droPer2 scaffold_88:198142-198362 + CGCCA-----------------------------------------------------------------------------------GCTGCTTGGAGGAGTGCCGCTGTGAGAACGGTGGCAAGTGCCATCACGTCTCGGGCGAGTGCTCCTGTGCGCCCGGGTTCACGGGTCCGCTGTAAGTGACCGCCAGATCGTGGCA---------------------------------------------------------------------AGA-GAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CCGAGAG-CCCCATACT-A-ATCTCCCCTTCGCCCCCTCCC-----------AATCAGATGCGATATGCGCTGTCCGGACGGAAAGCACGGGGCACAGTGCCA-----------------------------------------GCAGG
droWil2 scf2_1100000004511:937379-937447 - A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCACTTCAC---------C-----------ATTCAGATGCGATATGAGTTGTCCGGACGGAAAGCATGGGGCTCAGTGTCA-----------------------------------------GCAGG
droVir3 scaffold_13049:2351725-2351952 - CATCATATAACCGGACGCTGCGAATGCCCGCCCGGCTATATGGGCGAGGTGTGCATGGACGAGTGTCCGCTGAATACGTACGGACGCAACTGCACGGAGAAATGCAATTGCCTGAATGATGCCGCCTGCAGTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGGCA-AGTGCGAGT-G-T--------------------------------------------------GCGCCC---GGCTGGCAGGGTGAGCGCTGCGAGCAGCGCATCTGTCCGGCCAATAAATACGGCGCCGACTGCAGCAAG
droMoj3 scaffold_6654:1516695-1516988 + GAGCCGTACTCGGGCCAGTGCGAGTGCGCGAAGGGCTACACGGGCGAGAGGTGCGCGGAGACGTGTCCGCCCCAGCGCTACGGCGAGAAGTGTGCGGAGCTGTGCCGCTGCGAGAACGGCGGCAGCTGCGATCACGTGTCCGGCAAGTGCTCCTGCGCGCCCGGCTTCACGGGTCCCCTGTAAGTGGGC-------------TA-------G--------------------------------------------CCCAG-TGCTAACTGAGACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------A-ATCGAGACT-A-ATGTGACGCTT---------CG---ATC----CATCAGATGCGACATGCGCTGCCCGGACGGCAAGCATGGCGCCCAGTGCGA-----------------------------------------GGAGG
droGri2 scaffold_15110:3382751-3382922 - GATCACAT---------------------------------------------------------------------------------------------------------------------------------CTCCGGCAAGTGCTCCTGTGCACCCGGCTACACGGGTCCTTTGTAAGTGGAC-------------AA-------GTG-A----------------------------------------------------------------------ATATCAAT-------------AA-------------------------C-AATTCTCGAGTCT----------------------AACATCCTCCG---------------------------------------------------------------------------------AAC---------CCACCAACCAAAAATTAGATGTGACATGCGCTGCCCGGATGGCAAGCATGGCGCCCAATGCGA-----------------------------------------GGAGG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCGCCCGGTTTCACGGGTCCCCTGTAAGTGAAC-------------GG-------AGG-GGCGTC--TTT-----GGCGGCACAAGCTTCTGGCC--GAGGATTG-GGATT----AAAATGAATCGTAGAATGCAATC-------------AA-------------------------T-ATTTTTCGTGGCTGTGA-------TCTAAGGCCGTTGCATCCTACGTTTCATTTT-GCTCCTGCT-------------------------------CCAACGCAAA-ACCCATACT-A-ATACTCCGCTC---------C-----------AACTAGATGCGATATGCGATGTCCGGACGGAAAGCATGGCGCCCAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
........................................................................................................................................................................................................................................................................ATT----AAAATGAATCGTAGAATGC......................................................................................................................................................................................................................................................................................................22121.00213693
.........................................................................................................................................................................................................................................................................TT----AAAATGAATCGTAGAATGCA.....................................................................................................................................................................................................................................................................................................2218.0083410
........................................................................................................................................................................................................................................................................ATT----AAAATGAATCGTAGAATGCA.....................................................................................................................................................................................................................................................................................................2313.0032010
.........................................................................................................................................................................................................................................................................TT----AAAATGAATCGTAGAATGC......................................................................................................................................................................................................................................................................................................2112.0020002
...............................................................................................................................................................................................................................................................................................................................................................................CCGTTGCATCCTACGTTTCATT...................................................................................................................................................................................................2212.0022000
.......................................................................................................................................................................................................................................................................GATT----AAAATGAATCGTAGAATG.......................................................................................................................................................................................................................................................................................................2211.0011000
...............................................................................................................................................................................................................................................................................................................................................................................CCGTTGCATCCTACGTTTCAT....................................................................................................................................................................................................2111.0010100
...................................................................................................................................................................................................................................................................................TGAATCGTAGAATGCAATC-------------AA-------------------------T-........................................................................................................................................................................................................................................................2211.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATGTCCGGACGGAAAGCATGGCG........................................................2611.0010100
...CACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
droSim2
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCGCCCGGTTTCACGGGTCCCCTGTAAGTGGAC-------------GG-------GGA-GGCGTC--TTT-----GGCGGCACAAGCTTCTGGCC--GAGGATTA-GGATT----AAAATGAATCGTAGAATGCAATC-------------AA-------------------------T-ATTTTTCGTGGCTGTGA-------TCTAAGGCCGTTGCATCCTACGTTTCATTTT-GCTCCTGCT-------------------------------CCAACGCAAA-ACCCATACT-A-ATACTCCGCTC---------C-----------AACTAGATGCGATATGCGATGTCCGGACGGAAAGCATGGCGCCCAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
........................................................................................................................................................................................................................................................................ATT----AAAATGAATCGTAGAATGC......................................................................................................................................................................................................................................................................................................22169.00695310001726057023000
...............................................................................................................................................................................................................................................................................AAAATGAATCGTAGAATGCAAT...................................................................................................................................................................................................................................................................................................22110.001010000009000000000
........................................................................................................................................................................................................................................................................ATT----AAAATGAATCGTAGAATG.......................................................................................................................................................................................................................................................................................................2117.00710000004110000000
.........................................................................................................................................................................................................................................................................TT----AAAATGAATCGTAGAATGCA.....................................................................................................................................................................................................................................................................................................2217.00720000003000002000
...................................................................................................................................................................................................................................................................................TGAATCGTAGAATGCAATC-------------AA-------------------------T-........................................................................................................................................................................................................................................................2216.00630101000000001000
........................................................................................................................................................................................................................................................................ATT----AAAATGAATCGTAGAATGCA.....................................................................................................................................................................................................................................................................................................2316.00610000003001001000
.........................................................................................................................................................................................................................................................................TT----AAAATGAATCGTAGAATGC......................................................................................................................................................................................................................................................................................................2115.00500000003000002000
...................................................................................................................................................................................................................................................................................TGAATCGTAGAATGCAATC-------------AA-------------------------..........................................................................................................................................................................................................................................................2114.00410001000000002000
...............................................................................................................................................................................................................................................................................AAAATGAATCGTAGAATGCAA....................................................................................................................................................................................................................................................................................................2113.00310000001000001000
........................................................................................................................................................................................................................................................................ATT----AAAATGAATCGTAGAA.........................................................................................................................................................................................................................................................................................................1913.00330000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGATGTCCGGACGGAAAGCATG...........................................................2613.00300000000000003000
........................................................................................................................................................................................................................................................................ATT----AAAATGAATCGTAGAAT........................................................................................................................................................................................................................................................................................................2012.00200000000000002000
...................................................................................................................................................................................................................................................................................TGAATCGTAGAATGCAATC-------------.....................................................................................................................................................................................................................................................................................1912.00211000000000000000
..............................................................................................................................................................................................................................................................AGGATTA-GGATT----AAAATGAAT................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
...............................................................................................................................................................................................................................................................................AAAATGAATCGTAGAATGCA.....................................................................................................................................................................................................................................................................................................2012.00200000020000000000
..............................................................................................................................................................................................................................................................AGGATTA-GGATT----AAAATGAATCG..............................................................................................................................................................................................................................................................................................................2311.00100000100000000000
...............................................................................................................................................................................................................................................................................AAAATGAATCGTAGAATG.......................................................................................................................................................................................................................................................................................................1811.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................TGCATCCTACGTTTCATTTT-GC..............................................................................................................................................................................................2211.00100000100000000000
..................................................................................................................................................................................................................................................................................................AATC-------------AA-------------------------T-ATTTTTCGTGGCTGG.........................................................................................................................................................................................................................................2211.00100100000000000000
..........................................................................................................................................................................................................................................................................T----AAAATGAATCGTAGAATGC......................................................................................................................................................................................................................................................................................................2011.00100000001000000000
...................................................................................................................................................................................................................................................................................TGAATCGTAGAATGCAAT...................................................................................................................................................................................................................................................................................................1811.00100000100000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CATCCTACGTTTCATTTT-................................................................................................................................................................................................1811.00100000100000000000
...............................................................................................................................................................................................................................................................................AAAATGAATCGTAGAATGC......................................................................................................................................................................................................................................................................................................1911.00100000001000000000
.........................................................................................................................................................................................................................................................................TT----AAAATGAATCGTAGAATG.......................................................................................................................................................................................................................................................................................................2011.00100000001000000000
.......................................................................................................................................................................................................................................................................GATT----AAAATGAATCGTAGAATG.......................................................................................................................................................................................................................................................................................................2211.00100000000000001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGGACGGAAAGCATGGCGCCCAG...................................................2711.00100100000000000000
...................................................................................................................................................................................................................................................................................TGAATCGTAGAATGCAATC-------------AA-------------------------A-........................................................................................................................................................................................................................................................2211.00100000000010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGTCCGGACGGAAAGCATGGC.........................................................2411.00100010000000000000
dm3
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCTCCCGGTTTCACGGGTCCCCTGTAAGTGGAC-------------GA-------AGG-GGCCTC--TTT-----GGCGGCACAAACTTCTGGCC--GAGGATCA-GG--C----AAAATGAAAGGCAGAATGCAATC-------------AA-------------------------TTATTTTTCGTGGCTGGGA-------TTTTAGGCCGTTGCATTCTACGTTTCATTTT-GCTCCTGCT-------------------------------CCAACGCAAA-ACCCATACT-A-ATACTCCGCTC---------C-----------AACTAGATGTGATATGCGCTGTCCGGATGGAAAGCATGGCGCCCAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...............................................................................................................................................................................................................................................................................AAAATGAAAGGCAGAATGCA.....................................................................................................................................................................................................................................................................................................20127.0027000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000600000000000000000000000100001000000000000000000000001010000000000000000000000000000000000000000000000000100010000140000001000000000000000000001101100000002000000200000
...............................................................................................................................................................................................................................................................................AAAATGAAAGGCAGAATGC......................................................................................................................................................................................................................................................................................................19118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000000000000000100010000000000000000000001002000000000000000022600
...............................................................................................................................................................................................................................................................................AAAATGAAAGGCAGAATGCAAT...................................................................................................................................................................................................................................................................................................22116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000001000000000100000000000000000000001200030000000000000000000000000000003000010101100000000000
...............................................................................................................................................................................................................................................................................................................................................................................CCGTTGCATTCTACGTTTCATT...................................................................................................................................................................................................22110.0010000000000000000000000000000010000000000000000000000000000000000000000000000000000000000010100000100000000100010000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGCTGTCCGGATGGAAAGCATG...........................................................2617.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TGAAAGGCAGAATGCAATC-------------AA-------------------------T.........................................................................................................................................................................................................................................................2215.005000000000000000000000100000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTTTCATTTT-GCT.............................................................................................................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000001000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTCTACGTTTCATTTT-GCTCCT..........................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................A-GG--C----AAAATGAAAGGCAGAATG.......................................................................................................................................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000100000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGGATGGAAAGCATGGC.........................................................2013.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000
...............................................................................................................................................................................................................................................................................AAAATGAAAGGCAGAATGCAA....................................................................................................................................................................................................................................................................................................2113.003000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATGGAAAGCATGGCG........................................................1812.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGGATGGAAAGCATGGC.........................................................2112.002000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGGATGGAAAGCATGGCGCC......................................................2412.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATATGCGCTGTCCGGATG....................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................................................................................................C----AAAATGAAAGGCAGAATGC......................................................................................................................................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCTGTCCGGATGGAAAGC..............................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATGCGCTGTCCGGAT.....................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGGATGGAAAGCATGGCGCCCA....................................................2612.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGCTGTCCGGATGGAAAGC..............................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGGATGGAAAGCATGGC.........................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGATATGCGCTGTCCGGATGGAA.................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCTGTCCGGATGGAAAGCATGGCG........................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTCTACGTTTCATTTT-GCTCCTGC........................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCTGTCCGGATGGAAAGCATGG..........................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TGAAAGGCAGAATGCAATC-------------AA-------------------------A.........................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TTCTACGTTTCATTTT-GCTCCTG.........................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................AAATGAAAGGCAGAATGCAAT...................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGAAAGCATGGCGCC......................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTTTCATTTT-GCTC............................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGGATGGAAAGCATGGCGC.......................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TGAAAGGCAGAATGCAATC-------------A....................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCTGTCCGGATGGAAAGCAT............................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGCGCTGTCCGGATGGAAAGC..............................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................G--C----AAAATGAAAGGCAGAATGC......................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATATGCGCTGTCCGGATGGAAAGC..............................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGAAAGCATGGCGCCCAGTGCC...............................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
......................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTTTCATTTT-GC..............................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTGTCCGGATGGAAAGCATGGCGC.......................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGCGCTGTCCGGATGGAAAG...............................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCTGTCCGGATGGAAAGCATGGC.........................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CCGTTGCATTCTACGTTTCAT....................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TGCATTCTACGTTTCATTTT-GC..............................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................TTCTGGCC--GAGGATC....................................................................................................................................................................................................................................................................................................................................1511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......T---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCTCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGATATGCGCTGTCCGGATGGAAA................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCTGTCCGGATGGAAA................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCTGTCCGGATGGAAAG...............................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................C----AAAATGAAAGGCAGAATGCAA....................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATATGCGCTGTCCGGATGGAAAGC..............................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGCTGTCCGGATGGAA.................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCGCTGTCCGGATGGAAAGCA.............................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TGGCC--GAGGATCA-GG--C----AAAA.....................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................CGGTTTCACGGGTCCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGGATGGAAAGCATGGCGCC......................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..........................................................................................................................................................................................................................................................................C----AAAATGAAAGGCAGAATGCA.....................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGGATGGAAAGCATGG..........................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCATACT-A-ATACTCCGCTC---------C-----------AACTAG...........................................................................................2811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGATATGCGCTGTCCG........................................................................2011.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGATGTGATATGCGCTGT...........................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGATATGCGCTGTCCGGATGGAAA................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATGGAAAGCATGGCGC.......................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATTCTACGTTTCATTTT-GCTCC...........................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGCTGTCCGGATGGAAAGC..............................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................CCGTTGCATTCTACGTTTC......................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...CACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCTGTCCGGATGGAAAGCA.............................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................TTTTCGTGGCTGGGA-------TTTTAGGCCGT.....................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGAAAGCATGGCGC.......................................................1811.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGGAAAGCATGGCGCCCAGT..................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
......................................................................................................................................................................TCACGGGTCCCCTGTAAGTGGAC-------------GA-------A....................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCGCCTGGCTTCACGGGTCCCCTGTAAGTGGAC-------------GA-------AGG-AGCCTC--TTT-----GGCGGCGTTAACTTCTGGCG--GAGGACCG-GG--C----AAAATGAAACGTAGAATGCAATG-------------CA-------------------------T-ATTTTCTGTAGCTGCAA-------TTTGAAGCCGTTGCATCCTGCGACTCATTTT-ACTCCTGCT-------------------------------CCAACGCAAA-ACCCATACT-A-ATCCTCCGCTT---------C-----------AACTAGATGCGATATGCGCTGTCCGGACGGGAAACACGGCGCCCAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...CACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................2517.0070000007
..................................................................................................................................................................................................................................................................................................................................................................................TTGCATCCTGCGACTCATTTT-................................................................................................................................................................................................2111.0011000000
..........................................................................................................................................................................................................................................................................C----AAAATGAAACGTAGAATGC......................................................................................................................................................................................................................................................................................................2011.0010000010
...............................................................................................................................................................................................................................................................................AAAATGAAACGTAGAATGCA.....................................................................................................................................................................................................................................................................................................2011.0010001000
..........................................................................................................................................................................................................................................................................C----AAAATGAAACGTAGAATGCA.....................................................................................................................................................................................................................................................................................................2111.0010000010
....................................................................................................................................................................................................................................................................................................................A-------------------------T-ATTTTCTGTAGCTGCAA-------TTTGA...........................................................................................................................................................................................................................2411.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCGGACGGGAAACACGGC.........................................................2011.0010000010
droYak3
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCGCCTGGTTTCACGGGTCCCCTGTAAGTGGA-------------------------------------------------------------------GGATCA-GG--C----AAAATGAAACGTAGAATGCAACG-------------CA-------------------------T-ACTTATCGTGGCTGTGA-------TTTCAAGCCGTTGCATCCTGCGGTTCATTTT-ACTCCTGCT-------------------------------CCAACGCAAA-ACCCATACT-A-ATCCTCCGCTC---------C-----------AACTAGATGCGATATGCGCTGTCCGGACGGGAAGCATGGCGCCCAGTGCCA-----------------------------------------ACAGGSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...............................................................................................................................................................................................................................................................................AAAATGAAACGTAGAATGCA.....................................................................................................................................................................................................................................................................................................2014.00411100100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGCTGTCCGGACGGGA.................................................................1912.00201000010000
..........................................................................................................................................................................................................................................................................C----AAAATGAAACGTAGAATGCAA....................................................................................................................................................................................................................................................................................................2211.00100100000000
..................................................................................................................................................................................................................................................................................ATGAAACGTAGAATGCAACG-------------CA-------------------------..........................................................................................................................................................................................................................................................2211.00100000010000
................................................................................................................................................................................................................................................................................AAATGAAACGTAGAATGCAACG-------------.....................................................................................................................................................................................................................................................................................2211.00100000100000
..........................................................................................................................................................................................................................................................................C----AAAATGAAACGTAGAATGCA.....................................................................................................................................................................................................................................................................................................2111.00100000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCTGTCCGGACGGGAAGCATGGC.........................................................2511.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCCGGACGGGAAGCATGGCGCCC.....................................................2711.00110000000000
.................................................................................................................................................................................................................................................................................AATGAAACGTAGAATGCAACG-------------C....................................................................................................................................................................................................................................................................................2211.00100100000000
...............................................................................................................................................................................................................................................................................AAAATGAAACGTAGAATG.......................................................................................................................................................................................................................................................................................................1811.00100000100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCGGACGGGAAGCATGGC.........................................................2211.00100000010000
......................................................................................................................................................CAGTGTGCGCCTGGTTTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.................................................................................................................................................................................................................................................................................AATGAAACGTAGAATGCAACG-------------.....................................................................................................................................................................................................................................................................................2111.00100100000000
................................................................................................................................................................................................................................................................................AAATGAAACGTAGAATGCA.....................................................................................................................................................................................................................................................................................................1911.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................TTGCATCCTGCGGTTCATTTT-AC..............................................................................................................................................................................................2311.00110000000000
................................................................................................................................................................................................................................................................................AAATGAAACGTAGAATGCAACA-------------.....................................................................................................................................................................................................................................................................................2211.00110000000000
...............................................................................................................................................................................................................................................................................AAAATGAAACGTAGAATGC......................................................................................................................................................................................................................................................................................................1911.00100001000000
droEug1
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGTGAATGCCAGTGTGCGCCTGGTTTCACAGGTCCCTTGTAAGTGGAC-------------GAAATGTGA-GG-AGCCTC--TTG-----GGCGGCATAACCCTATCGCT--GAC-ATCATAC--G----AAAACTAAACGTAGAATGCC-----------TTGGGAG-------------------------T-GTAATA-------ATGATTCTTATTCTTAAACCAATGCATCCTACGATTAGTTTT-TCTCCTGCG------AGTTAGGTTATG-------------CCACCCTCAA-AACAATACT-A-ATCCTCCGCTT---------C-----------AACTAGATGCGATATGCACTGCCCGGACGGGAAACATGGCGCCCAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotal
No Reads
droBia1
AA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGATTTGTAAAAGGGC-----------TAAAAAA-------------------------T-ACTCTC-------GCGA-------TT------CTTGGCATTCTACGGGTAATTTT-GCTCCTC--------------------------C------------CAAGACCCTCTACT-A-ATCCTCCGCTC---------C-----------AACTAGATGCGACATGCGCTGTCCGGACGGGAAACATGGCGCCCAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotal
No Reads
droTak1
AAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCATTACATTCTACGTTTAATTTT-GCCCCCGA-----------------------------GATCCCCTG-ATA-CCCCGTACT-A-ATGCTCCGCTC---------C-----------AACTAGATGCGACATGCGCTGTCCGGACGGGAAGCATGGCGCCCAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotal
No Reads
droEle1
CACCACATCAGCGGAAAGTGCGAGTGTCCGCCGGGATACTTGGGAGAGCGCTGCTTCGACGAGTGTCCGCTGAACACGTACGGATTCAATTGCAGCATGACCTGCGACTGCGAGAACGATGCCACCTGCGATCGCGCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGGATCCTGCATCTGCAATCCC---GGCTGGCGGGGGGCCAAGTGTGAGGAGAGGATTTGCGAGGCGGACAAGTATGGGTTGGACTGCA-----SizeHit CountTotal NormTotal
No Reads
droRho1
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAATGCCAGTGTGCACCTGGTTTCACGGGTCCTCTGTAAGTGGAC-------------GGAATGAGA-GG-AGTGTC--TTT----CGGTGACATCATCGAATGGCA--CAGGATCACGG--C----AAAATTAAACGCAGATTGCATTG-------------AATCAAGCAAG------TTAATTA--AG----------------GTTTTTTATA-CTAAATTACTGCATCCTACGATTGATTTT-GCTGCTTTCCTTGAGCTCTCCGATATGT-------------CACCCCAAA-AACCCTACT-A-ATCCTCCGCTC---------C-----------AACTAGATGCGACATGCGCTGTCCGGATGGCAAACATGGCGCCCAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotal
No Reads
droFic1
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAGTGCCAGTGTGCGCCCGGTTTTACGGGTCCTCTGTAAGTGGAC-------------GGAATGCGA-GGAGGCGCC--TTT----------------------------AGGAGTT-GGGCT----GAAGTTAAGCGTAGGATGCAACCTGAAACTGTTG--AA-------------------------G-----------------G-------TTTTTGGCCACTGCATCCTACGCTTAACTTT-GACCCCA--------------------------C-A-GAACCC---------CTCTAACTTAACTCTAACGCCC---------C-----------AACTAGATGCGACATGCGCTGTCCGGACGGCAAGCACGGCGCCCAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotal
No Reads
droKik1
CACCATGT---------------------------------------------------------------------------------------------------------------------------------CTCCGGCGAGTGCCAGTGTGCGCCCGGCTTTACGGGTCCCCTGTAAGTGGG--------------AA-----GA-GG-AGCTGCCTCTTGCCTCGGAGACATATCATT-TCGCCTTGAGGTTTACGA--C----AAAATGAATCGTAGATTTCT-----------TA-----CTATGCATGCCACATTTTATTA--AT-------------------------TTTTTTACCCCTGCAATCTACGATTCACTTT-GTT-TG-CCCCGTGGCGCTTTGCCAAGTCTCCTTCC----CACCCACCGA-ATCCCTACT-A-ATCCTACGCTC---------C-----------AAATAGATGCGACATGCGCTGTCCGGACGGCAAGCACGGCGCCCAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotal
No Reads
droAna3
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAGTGCACCTGTGCGCCGGGCTTCACGGGTCCGCTGTAAGTGCGG-------------GA-----GA-GGATGATTC--TTT-----CACGCAAAAGGGTCATGGCATAGAGGCCAG-GGGTCATGGAGAGTTGCCCGTAGATGCCC-----------TT-----CCATT----TTTCATTT--TTACACAC-----------------CTTT--------TAGT-TTGC-GACTACGGTGAACTTTTCTA-TGACCCCGGGGCTGTATGCTTGATTTCCCTCA-A----AGCCCCAA-TCTCCGACT-A-ATCCTTCGCTT---------CA----------AACTAGATGCGACATGCACTGCCCGGACGGGAAGCACGGGGCTCAGTGCCA-----------------------------------------GCAAGSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...............................................................................................................................................................................................................................................................................................................................................................................................TGAACTTTTCTA-TGACCCCGG...................................................................................................................................................................................2111.001100000
....................................................................................................................................................GCACCTGTGCGCCGGGCTTCACGGGTCC........................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATGCACTGCCCGGACGGGAAGCA.............................................................2611.001000001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGACGGGAAGCACGGGGC.......................................................2011.001100000
................................................................................................................................................GAGTGCACCTGTGCGCCGGGCTTC................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
........................................................................................................................................................................................................................................................................................................................................TTACACAC-----------------CTTT--------TAGT-TTGC-.................................................................................................................................................................................................................2011.001010000
droBip1
CACCACGT---------------------------------------------------------------------------------------------------------------------------------GTCCGGCGAGTGCACCTGTGCACCGGGCTTCACGGGTCCGCTGTAAGTGCGG-------------GA-----GA-GGATGATTCGTTTT-----GACGCAAAAGGAACATGGCATAGAGTCCAG-GGTTTATAGAGAGTTATCCGTAGATATCC-----------TT-----CCATT----TTTCATTTGATTACAAAA-----------------GTTT--------TAGT-TTAA-AAGTACGGAGACATTTTCTA-TGACCCCGGGGCTGTATGCTTTGTTTACCCCAAA----AGCCCCAA-TCTCCGACT-A-ATCCTCCGCTT---------CA----------AACTAGATGCGACATGCGCTGCCCGGACGGAAAGCACGGGGCGCAGTGCCA-----------------------------------------GCAAGSizeHit CountTotal NormTotal
No Reads
dp5
GAGCCCTTCAGCGGGGAGTGCGAGTGCGCCAAGGGCTATACGGGCGCCAGGTGCGCCGATGTCTGTCCGGAGGGGCGCTTTGGCGCCAGCTGCTTGGAGGAGTGCCGCTGTGAGAACGGTGGCAAGTGCCATCACGTCTCGGGCGAGTGCTCCTGTGCGCCCGGGTTCACGGGTCCCCTGTAAGTGACCGCCAGATCGTGGCA---------------------------------------------------------------------AGA-GAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CCGAGAG-CCCCATACT-A-ATCTCCCCTTCGCCCCCTCCC-----------AATCAGATGCGATATGCGCTGTCCGGACGGAAAGCACGGGGCACAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...............GAGTGCGAGTGCGCCAAGGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.0040400000000
................................................................................................GAGGAGTGCCGCTGTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
............................................................................................................TGTGAGAACGGTGGCAAGTGCCATC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020200000000
................AGTGCGAGTGCGCCAAGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
.....................................................................................................................................ACGTCTCGGGCGAGTGCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020200000000
...........................................................TGTCTGTCCGGAGGGGCGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020200000000
...........................................................................................................................................................TGCGCCCGGGTTCACGGGTCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................................ATCACGTCTCGGGCGAGTGCTC................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................................ATCACGTCTCGGGCGAGTGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGCTGTCCGGAC.....................................................................1811.0010100000000
...........................................GCGCCAGGTGCGCCGATGTCTGTCCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...........................................................................................GCTTGGAGGAGTGCCGCTGTGAGAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000001000
...................GCGAGTGCGCCAAGGGCTATACGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...............GAGTGCGAGTGCGCCAAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAGCACGGGGCACAGT..................................................1811.0010100000000
..........................................................................................................................CAAGTGCCATCACGTCTCGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCGCTGTCCGGACGGAAAGCACG...........................................................2711.0010000001000
...................................................................................CGCCAGCTGCTTGGAGGAGTGCCGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................................................................................................................................CGGGCGAGTGCTCCTGTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.................GTGCGAGTGCGCCAAGGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
................................................................................................................................................GAGTGCTCCTGTGCGCCCGGGTTCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..................................................................................................................................................GTGCTCCTGTGCGCCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACGGAAAGCACGGGGC.......................................................1911.0010000000001
..........................................................................................................GCTGTGAGAACGGTGGCAAGTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTCCGGACGGAAAGCACGG..........................................................2211.0010100000000
.......................GTGCGCCAAGGGCTATACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................................................................GTGCCATCACGTCTCGGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................CTATACGGGCGCCAGGTGCGCCGATGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..........................................................................................................GCTGTGAGAACGGTGGCAAGTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.....................GAGTGCGCCAAGGGCTATACGGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
....CCTTCAGCGGGGAGTGCGAGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
........................................................................................................................GGCAAGTGCCATCACGTCTCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................CGGGCGAGTGCTCCTGTGCGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...................................................................................................GAGTGCCGCTGTGAGAACGGTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..................................................................................................................................ATCACGTCTCGGGCGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.............................................GCCAGGTGCGCCGATGTCTGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGCTGTCCGGACGGAAAGC..............................................................2511.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATATGCGCTGTCCGGA......................................................................1811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCGCTGTCCGGACGG...................................................................1911.0010100000000
........................................................CGATGTCTGTCCGGAGGGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
......................................................GCCGATGTCTGTCCGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
....................................................................................................AGTGCCGCTGTGAGAACGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................GCCCGGGTTCACGGGTCCCCTGTAAGT...............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..GCCCTTCAGCGGGGAGTGCGAGTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
....................................................................................GCCAGCTGCTTGGAGGAGTGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
......................AGTGCGCCAAGGGCTAGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.2510100000000
droPer2
CGCCA-----------------------------------------------------------------------------------GCTGCTTGGAGGAGTGCCGCTGTGAGAACGGTGGCAAGTGCCATCACGTCTCGGGCGAGTGCTCCTGTGCGCCCGGGTTCACGGGTCCGCTGTAAGTGACCGCCAGATCGTGGCA---------------------------------------------------------------------AGA-GAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------CCGAGAG-CCCCATACT-A-ATCTCCCCTTCGCCCCCTCCC-----------AATCAGATGCGATATGCGCTGTCCGGACGGAAAGCACGGGGCACAGTGCCA-----------------------------------------GCAGGSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.......................................................................................................................................GTCTCGGGCGAGTGCTCCTGTGCGCCCGG....................................................................................................................................................................................................................................................................................................................................................................................................................................2913.003300000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCGGACGGAAAGCACGGGGCA......................................................2411.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATGCGCTGTCCGGACGGAAA................................................................2311.001010000
...................................................................................................................................................................................GTAAGTGACCGCCAGATCGTGG...............................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
............................................................................................CTTGGAGGAGTGCCGCTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.502000002
....A-----------------------------------------------------------------------------------GCTGCTTGGAGGAGTGCCGCTGTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2740.251000001
....................................................................................................AGTGCCGCTGTGAGAACGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.201000001
droWil2
A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCACTTCAC---------C-----------ATTCAGATGCGATATGAGTTGTCCGGACGGAAAGCATGGGGCTCAGTGTCA-----------------------------------------GCAGGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGGAAAGCATGGGGCTCA....................................................2111.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGTCCGGACGGAAAGC..............................................................1911.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCCGGACGGAAAGCATGGG.........................................................2311.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGGGCTCAGTGTCA-----------------------------------------GCAGG2111.00100001
droVir3
CATCATATAACCGGACGCTGCGAATGCCCGCCCGGCTATATGGGCGAGGTGTGCATGGACGAGTGTCCGCTGAATACGTACGGACGCAACTGCACGGAGAAATGCAATTGCCTGAATGATGCCGCCTGCAGTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGGCA-AGTGCGAGT-G-T--------------------------------------------------GCGCCC---GGCTGGCAGGGTGAGCGCTGCGAGCAGCGCATCTGTCCGGCCAATAAATACGGCGCCGACTGCAGCAAGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAGCAGCGCATCTGTCCGGC............................2316.0060001000000000000000000000000000000000000000000000000000000000000000000030200000
..............................................................................................................................TGCAGTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGGCA-AGTGC........................................................................................................................................2113.0030000000000000000000030000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGAGCAGCGCATCTGTCCGGCCAAC........................2913.0030000000000000000000000000000000000000000000000000000000000000030000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGAGCAGCGCATCTGTCCGGC............................2513.0030001000000000000000000000000000000000000000000000000000000000010000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCGCTGCGAGCAGCGCATCTGTCCGGC............................2913.0030000000000000000000000000000000000000000000000000000000000000030000000000000000
.....................................ATATGGGCGAGGTGTGCATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000001000000000000000000000000000100000000000000000
..............................................................GTGTCCGCTGAATACGTACGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000200000000000000
.ATCATATAACCGGACGCTGCGAATGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000002000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAGCAGCGCATCTGTCC...............................2012.0020020000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................GAGGTGTGCATGGACGAGTGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000100000100000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGCA-AGTGCGAGT-G-T--------------------------------------------------G.............................................................................1912.0020000000000000000000000000000000001000000000000000000000000000100000000000000000
.....................................ATATGGGCGAGGTGTGCAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000001100000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCC---GGCTGGCAGGGTGAGCGCTGCGAG.............................................2812.0020000000000000000000000000000000000000000000000000000000000000020000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCA-AGTGCGAGT-G-T--------------------------------------------------GCGCC.........................................................................2212.0020000000200000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-T--------------------------------------------------GCGCCC---GGCTGGCAGGGTG........................................................2111.0010000010000000000000000000000000000000000000000000000000000000000000000000000000
................................CGGCTATATGGGCGAGGTGTGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
...........................................................CGAGTGTCCGCTGAATACGTACGGACGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
......ATAACCGGACGCTGCGAATGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
......ATAACCGGACGCTGCGAATGCCCGCCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
...CATATAACCGGACGCTGCGAATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
........................................................................AATACGTACGGACGCAACTGCACG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCC---GGCTGGCAGGGTGAGC.....................................................2011.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTGAGCGCTGCGAG.............................................1711.0010000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTGAGCGCTGCGAGCAG..........................................2011.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
.................................................TGTGCATGGACGAGTGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGGCA-AGTGCGAGT-G-T--------------------------------------------------GCGCCC---.....................................................................2711.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATACGGCGCCGACTGCAGCA..2111.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGCATCTGTCCGGC............................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................GTGTCCGCTGAATACGTACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000100000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGCTGCGAGCAGCGCATCTGTCCGGCCAAC........................3211.0010000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................ACGGACGCAACTGCACGGAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000010000000000000
...............................................GGTGTGCATGGACGAGTGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
.......TAACCGGACGCTGCGAATGCCCGCCCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
...............CGCTGCGAATGCCCGCCCGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000100000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGGCA-AGTGCGAGT-G-T--------------------------------------------------..............................................................................1911.0010000000000000000000010000000000000000000000000000000000000000000000000000000000
..............................................................................................CGGAGAAATGCAATTGCCTGAATGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
.....TATAACCGGACGCTGCGAATGCCC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000100000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACGGCGCCGACTGCAGCA..2211.0010000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGAGCAGCGCATCTGTCC...............................2211.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GTACGGACGCAACTGCACGGAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................AATGCAATTGCCTGAATGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
............................................CGAGGTGTGCATGGACGAGTGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATGGGCGAGGTGTGCATGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATACGGCGCCGACTGCAG....2011.0010000000000010000000000000000000000000000000000000000000000000000000000000000000
...............CGCTGCGAATGCCCGCCCGGCTATATGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.............GACGCTGCGAATGCCCGCCCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
.....................................ATATGGGCGAGGTGTGCATGGACGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000100000000000000000000000000000000000000000000000000000000000
...............CGCTGCGAATGCCCGCCCGGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAATACGGCGCCGACTGC......2111.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
..........CCGGACGCTGCGAATGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................TCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGGCA-AGTGCGAGT-G-T--------------------------------------------------GC............................................................................2411.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGCATCTGTCCGGC............................1811.0010000000000000000000000000000000000000000000000000000000000000000000010000000000
.................................................................................................................................AGTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGGCA-AGTGCGAGT-G-T--------------------------------------------------..............................................................................2411.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CCTGAATGATGCCGCCTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.ATCATATAACCGGACGCTGCGAATGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTGAGCGCTGCGAGCA...........................................1911.0010000000000000000100000000000000000000000000000000000000000000000000000000000000
........................................................................................................CAATTGCCTGAATGATGCCGCCTGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................GCAGTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGGCA-AGTGCGAGT-G-T--------------------------------------------------G.............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AGTGCGAGT-G-T--------------------------------------------------GCGCCC---GGCTGGCA.............................................................2611.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
.................................................................................................................................AGTCC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGGCA-AGTGCGAG.....................................................................................................................................2111.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
...................................................................CGCTGAATACGTACGGAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
................................................GTGTGCATGGACGAGTGTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...........................................................CGAGTGTCCGCTGAATACGTACGGACG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
.................................................................................GGACGCAACTGCACGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000100000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................ACGTACGGACGCAACTGCACGGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
..............................................................................................CGGAGAAATGCAATTGCCTGAATGATGCCGCCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................3311.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGGGTGAGCGCTGCGAGCAGC.........................................2511.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
.......TAACCGGACGCTGCGAATGCCCGCCCGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000010000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAGCGCATCTGTCCGGCC...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000100000000
..........................................................................................TGCACGGAGAAATGCAATTGCCTGAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000100
.............................................GAGGTGTGCATGGACGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
CATCATATAACCGGACGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
............................................CGAGGTGTGCATGGACGAGTGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000100000000000000000
droMoj3
GAGCCGTACTCGGGCCAGTGCGAGTGCGCGAAGGGCTACACGGGCGAGAGGTGCGCGGAGACGTGTCCGCCCCAGCGCTACGGCGAGAAGTGTGCGGAGCTGTGCCGCTGCGAGAACGGCGGCAGCTGCGATCACGTGTCCGGCAAGTGCTCCTGCGCGCCCGGCTTCACGGGTCCCCTGTAAGTGGGC-------------TA-------G--------------------------------------------CCCAG-TGCTAACTGAGACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------A-ATCGAGACT-A-ATGTGACGCTT---------CG---ATC----CATCAGATGCGACATGCGCTGCCCGGACGGCAAGCATGGCGCCCAGTGCGA-----------------------------------------GGAGGSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGCTT---------CG---ATC----CATCA............................................................................................1911.001100000
.............................................GAGAGGTGCGCGGAGACGTGTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
....................................................................................GAGAAGTGTGCGGAGCTGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.....................................................................................................GTGCCGCTGCGAGAACGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
............................................................................GCTACGGCGAGAAGTGTGCGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGCGCTGCCCGGACGG...................................................................1911.001100000
......................AGTGCGCGAAGGGCTACACGGGCGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
.................................................................................................................................GATCACGTGTCCGGCAAGTGCTCCTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.....................GAGTGCGCGAAGGGCTACACGGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
............................................................................GCTACGGCGAGAAGTGTGCGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
............................................................................................................................GCTGCGATCACGTGTCCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droGri2
GATCACAT---------------------------------------------------------------------------------------------------------------------------------CTCCGGCAAGTGCTCCTGTGCACCCGGCTACACGGGTCCTTTGTAAGTGGAC-------------AA-------GTG-A----------------------------------------------------------------------ATATCAAT-------------AA-------------------------C-AATTCTCGAGTCT----------------------AACATCCTCCG---------------------------------------------------------------------------------AAC---------CCACCAACCAAAAATTAGATGTGACATGCGCTGCCCGGATGGCAAGCATGGCGCCCAATGCGA-----------------------------------------GGAGGSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..................................................................................................................................................GTGCTCCTGTGCACCCGGCTA.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 10/20/2015 at 06:51 PM