dse_97

Name	Class	Family	Strand
BURDOCK_LTR	LTR	Gypsy	+

TTTATTAGTGTAGGTTTATTAATTATAATAGGGCTTGCGCGGTCTGCACTTAATGAGACGAATTGTAAGTACGTGGCGATGACCGACGCTACTCATCTCCCAATATCGACTGACTTAAGTATATCAAAAGCTCTTATCTCTAAAGCTTAACAAGGTACCGCTTCTTA *********************************.((.........((((((..((.(((((((..((...((((((........))))))....))..)))).))).))...)))))).........)).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo	M054 female body	V115 head	V113 male body
..................................................TAATGAGACGAATTGTAAGTACGT.............................................................................................	24	0	3	10.33	31	19	4	5	3
..................................................TAATGAGACGAATTGTAAGTACGTG............................................................................................	25	0	3	1.00	3	0	3	0	0
......................................................................................................................GGATAGCAGAAGCTCTTATC.............................	20	3	5	0.40	2	0	2	0	0
..................................................TAATGAGACGAATTGTAAGTATGTG............................................................................................	25	1	3	0.33	1	1	0	0	0
..................................................TAATGAGACGAATTGTAAGTACGTGGC..........................................................................................	27	0	3	0.33	1	0	1	0	0
.....................................................................................................................AGTATAGCAGAAGCTCGTATC.............................	21	3	3	0.33	1	0	1	0	0
......................................................................................................................GTATAGCAGAAGCTCGTATC.............................	20	3	4	0.25	1	0	1	0	0
........................................................................................................................ATATCAGAAGCTCGTATC.............................	18	2	6	0.17	1	0	1	0	0
...................TAATTATAATAGGGCTTGCGCGG.............................................................................................................................	23	0	9	0.11	1	1	0	0	0
...................................................................................................................................TCTTATCTCTAAAGCTTAACAAGGT...........	25	0	20	0.10	2	0	2	0	0
...................................................................................................................................TCTTATCTCTAAAGCTTAACAAGG............	24	0	20	0.10	2	0	2	0	0
..................................................TAATGAGCCGAATTGTAAGTACGTG............................................................................................	25	1	16	0.06	1	0	1	0	0
TTTATTAGTGTAGGTTTATT...................................................................................................................................................	20	0	19	0.05	1	0	0	0	1
............................................................AATTGTAAGTACGTGGCGATG......................................................................................	21	0	19	0.05	1	0	1	0	0
............................................TTCACTTAATGAGACGAATTGTA....................................................................................................	23	1	19	0.05	1	0	1	0	0
...........................................................GAATTGTAAGTACGTGGCGAT.......................................................................................	21	0	19	0.05	1	0	0	1	0
...................................................................................................................................TCTTATCTCTAAAGCTTAACAAGGGA..........	26	1	20	0.05	1	0	1	0	0
...................................................................................................................................TCTTATCTCTAAAGCTTAACAAGGTA..........	26	0	20	0.05	1	0	1	0	0
................................................................GTAAGTACGTGGCGATGACCG..................................................................................	21	0	20	0.05	1	0	0	1	0
.....................................................................................................................................TTATCTCTAAAGCTTAACAAGGTA..........	24	0	20	0.05	1	0	1	0	0
.......................................................................................................................GATAGCAAAAGCTCGTATC.............................	19	3	20	0.05	1	0	0	1	0

AAATAATCACATCCAAATAATTAATATTATCCCGAACGCGCCAGACGTGAATTACTCTGCTTAACATTCATGCACCGCTACTGGCTGCGATGAGTAGAGGGTTATAGCTGACTGAATTCATATAGTTTTCGAGAATAGAGATTTCGAATTGTTCCATGGCGAAGAAT *********************************.((.........((((((..((.(((((((..((...((((((........))))))....))..)))).))).))...)))))).........)).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V114 embryo	V115 head
.......................................................................GCACCGCTACTGGCTGCGAT............................................................................	20	0	3	0.67	2	0	1	1
...................................ACGCGCCAGACGTGAATTACTCTGC...........................................................................................................	25	0	7	0.57	4	3	1	0
....................................CGCGCCAGACGTGAATTACTCTGC...........................................................................................................	24	0	7	0.43	3	2	1	0
..........................................................................................TGAGTAGAGGGTTATAGCTGACTGA....................................................	25	0	3	0.33	1	1	0	0
.......................................................................................CGATGAGTAGAGGGTTATAGCTGAC.......................................................	25	0	3	0.33	1	1	0	0
....................................CGCGCCAGACGTGAATTACTCTG............................................................................................................	23	0	7	0.14	1	1	0	0
......................................................................................................................................ATAGAGATTTCGAATTGTTCCATGG........	25	0	17	0.12	2	1	1	0
.....................TAATATTATCCCGAACGCGCCAGACGT.......................................................................................................................	27	0	9	0.11	1	1	0	0
....................TGACTATTATCCCCAACGCG...............................................................................................................................	20	3	11	0.09	1	0	0	1
......................................................................................................................................ATGGAGATTTCGAATTGTTCCATGG........	25	1	17	0.06	1	0	1	0
........................................................................................................................................AGAGATTTCGAATTGTTCCATGG........	23	0	17	0.06	1	1	0	0
..ATAATCACATCCAAATAATTAATATTAT.........................................................................................................................................	28	0	19	0.05	1	1	0	0
.......................................................................................................................................TAGAGATTTCGAATTGTTCCAT..........	22	0	20	0.05	1	1	0	0
.........................................................................................................................................GAGATTTCGAATTGTTCCATG.........	21	0	20	0.05	1	0	0	1
....................................................................................................................................GAATAGAGATTTCGAATTGTTCCAT..........	25	0	20	0.05	1	0	1	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_973:682-848 -	dse_97	TTTATTAG-TGTAGGTT-------------------TATTAATTATAATAGGGCTTGCGCGGT-CTGCAC-----------TTAATGAGACG-AATT-------------GTAAG--------------------------TACGTGGCGATGACCGACGCTACTCATCTCCCAATATCGACTGACTTAAGTATAT--------------------------------------------------------------------CAAAAGCTCTTATCTCTAAAGCTTA------------------------------------ACAAGGTACCG----CTTCTTA
droSim2	node_51319:245-411 -		TTTATTAG-TGTAGGTT-------------------AATTAATTATAATAGGGCTTGCGCGGT-CTGCAC-----------TTAATGAGACG-AATA-------------GTAAG--------------------------TACGTGGCGATGACCGACGCTTCTAATCTTCCAAAATCGACTGACTTAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTCTAAAGCTTA------------------------------------ACAAGTTACAG----TTTCTTA
dm3	chr2RHet:419089-419255 +		ACTCATGTATT-----------------------TTTAT---TATCAATACTCTTTG----------CAT----AGGTTATGTAATAAAAAGGTATTGG-------------------------------------------------------------------------------------------------TATTTTTAATTCGTTCAATAAGCGTTATACTTACAATATAATAATAGTGCTTAACAAAAAATT--------T------------TA-AGGTAGAT--GGTCTTAGTAATTAATATTATTTTTTATGTA---------ATC-----------
droEre2	scaffold_4845:3072630-3072768 -		TTTATTTG-TATA-----------------------CAA---TTATAATAGAATTTGTGCGGT-CTGCAC-----------TTAATGAGACG-AATTTG--------TATGTTTG--------------------------TGCGTGGCGATGAACGACGCTTTTGATCTCCAAATATCGACTGCCT--ATTACAG----------------AATAG---------------------------------------------------ATCTCTTATCTTTA-----------------------------------------------------------------
droYak3	v2_chrUn_1163:37060-37212 +		ACTCATGTATT-----------------------TTTAT------CAACACTCTGTT----------CAT----AGGTTATGTAATAAAAAGGTATTGG-------------------------------------------------------------------------------------------------TATTTTTAATTTGTTCAATAAGCGTTATACTTACAATATAATAATAATGCTTAACAAACTATT--------T------------TA-AGGTAAAATTAATA-------------TTATATTTTATGTA---------ATC-----------
droEug1	scf7180000405866:28929-29092 +		ACTCATCTGTT-----------------------TTTGT---CTTCAATACTCTTTG----------CAC----AAATTATATAACGAGGA-ATAAAAG-------------------------------------------------------------------------------------------------AATTTTCGATTCGTTCAATAAGCGTTATACTTACAATTAATTAATAGTGCTTAAGGAAAGGTT----ACATA------------TA-TGATAAATTGGGTCTTATGTATTAAT--------ATA----AAAA-----GTG-----------
droTak1	scf7180000413285:4668-4830 +		AGTCATGTGTT-----------------------TTTGT---CATCAATACTCTTGG----------CAC----AAATTATATAATGAGGA-ATATAAG-------------------------------------------------------------------------------------------------AATTTTCGATTCGTTCAATAAGAGTTATACTCACAATTTATTAATAGTGCTTAAGGAAAGGGTGCATACATA------------TA-TGGTAAATTGGGTCTTACGA--------------------AAAAA--GTGAAA-----------
droRho1	scf7180000763555:4-132 -		TTTCCTTA-TTCAGGTT-------------------TTT---ACTTAAGAC-----GCGCGGTACTGCGC------------GAATGAGAAG-ACTTAG-----------G-TTT--------------------------CGGGAGGCGATGACCGTCACGATTTATTTCCAAAATTCAACTAAAT---------------------------------------------------------------------ACTAAGTACATAAATTCTTAT----------------------------------------------------------------------
droKik1	scf7180000301793:4772-4922 +		ATTCATGTGTT-----------------------TTTGT-------------CTTTG----------CAC----AAATGAATTTTTAAGAA-A--TAGT-------------------------------------------------------------------------------------------------TATTTTCGTTTCGTTCAATATGCGTTATACTTACAATGAATTAACCTAAATTAACGTAGAACT--------A------------TA-AAGTTA-----------TGATTTAATGTATTATTTTATGTAAATT--------------ATGTA
droAna3	scaffold_3844:2456-2643 -		CTGTTTAG-CGTG--------------------------------------------------------------AACGATTTATTAGGTA-A--TATCTATCCACGTGGTTTTGTGGGTTGAGTTTTAAT--ATGAGTCTTGCGTGGTGATGACCGGCGCATTTGATCTACAAAAATCGACTGAACTAGGTACAG---------------------------------------------------------------------AAATGTTCTTATCTCTAATGTTAAATCTACTG-------------A---------CGAAAACATAGTACCGAAATATTCTTA
droBip1	scf7180000392919:10398-10606 -		TTTGTTAA-T--AGGTTTTATTTATTCGGTCCAGCTAGA-----------------CAGCGGTCTAGCGT----GCCCGATTAATTATATA-A--TAATTATCCACGTGGGTTTGTGAGTTGAGATTTTATTGA-------TGACCGGTGACGACCGGCGCATGTGATCTCCAAATATCGACTGACT---GTACAG--------------------------------------------------------------------AAAATGTTCTTATCTGTAATGTTAAATCTATTA-------------A---------CGAAAACAAAGTACCG-----------
dp5	Unknown_group_55:29169-29261 +		TTATTTAT-TTC----------------------ACTAT------CAATCA-ACTTG----------CAAGACTAAATTGTGTTTTAGGTG-GGGTTTT-----------------------------------------------------G-------------------------------------------AG-TTTTTTTTTTTTTAATGAACACTCTACTCACA--------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004961:4811525-4811616 +		ATTCAAAAATT-T--T------------------TCTGT---TGCAAAGACACTTTA----------CAA----ACACTTTTTGTTT---A-AATTTTT-----------------------------------------------------G-------------------------------------------TA-TTTATTTACTTTAAATAAGCACTCTACTCACA--------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_1121:2785-2913 -		GTTGTTAGATG-----------------------TTAGT-----------------GTGCGGTGTTGCAC-----------AAAATGAGTAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGACGACCGACGTTCTTTATTATCAAAAATCAACTAAA----GTACAG-----------------------------------------------------------------TGACATAAATTCTTATATCCAAAGCT------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

TTTATTAG-TGTAGGTT-------------------TATTAATTATAATAGGGCTTGCGCGGT-CTGCAC-----------TTAATGAGACG-AATT-------------GTAAG--------------------------TACGTGGCGATGACCGACGCTACTCATCTCCCAATATCGACTGACTTAAGTATAT--------------------------------------------------------------------CAAAAGCTCTTATCTCTAAAGCTTA------------------------------------ACAAGGTACCG----CTTCTTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................TAATGAGACG-AATT-------------GTAAG--------------------------TACGT.........................................................................................................................................................................................................	24	3	10.33	31	4	3	19	5
..................................................................................TAATGAGACG-AATT-------------GTAAG--------------------------TACGTG........................................................................................................................................................................................................	25	3	1.00	3	3	0	0	0
..................................................................................TAATGAGACG-AATT-------------GTAAG--------------------------TACGTGGC......................................................................................................................................................................................................	27	3	0.33	1	1	0	0	0
.......................................TAATTATAATAGGGCTTGCGCGG.............................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	0	1	0
...............................................................................................................................................................................................................................................................................TCTTATCTCTAAAGCTTA------------------------------------ACAAGGT...............	25	20	0.10	2	2	0	0	0
...............................................................................................................................................................................................................................................................................TCTTATCTCTAAAGCTTA------------------------------------ACAAGG................	24	20	0.10	2	2	0	0	0
TTTATTAG-TGTAGGTT-------------------TATT...................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	1	0	0
.............................................................................................AATT-------------GTAAG--------------------------TACGTGGCGATG..................................................................................................................................................................................................	21	19	0.05	1	1	0	0	0
...........................................................................................G-AATT-------------GTAAG--------------------------TACGTGGCGAT...................................................................................................................................................................................................	21	19	0.05	1	0	0	0	1
...............................................................................................................................................................................................................................................................................TCTTATCTCTAAAGCTTA------------------------------------ACAAGGTA..............	26	20	0.05	1	1	0	0	0
..............................................................................................................GTAAG--------------------------TACGTGGCGATGACCG..............................................................................................................................................................................................	21	20	0.05	1	0	0	0	1
.................................................................................................................................................................................................................................................................................TTATCTCTAAAGCTTA------------------------------------ACAAGGTA..............	24	20	0.05	1	1	0	0	0

droSim2

TTTATTAG-TGTAGGTT-------------------AATTAATTATAATAGGGCTTGCGCGGT-CTGCAC-----------TTAATGAGACG-AATA-------------GTAAG--------------------------TACGTGGCGATGACCGACGCTTCTAATCTTCCAAAATCGACTGACTTAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTCTAAAGCTTA------------------------------------ACAAGTTACAG----TTTCTTA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGACGC..........................................................................................................................................................................................	24	14	74.00	1036	0	0	0	41	0	0	153	219	126	98	391	7	1	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGACGCT.........................................................................................................................................................................................	25	14	45.57	638	0	0	7	3	0	0	63	119	38	72	334	0	2	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGACG...........................................................................................................................................................................................	23	14	22.64	317	0	0	1	6	0	0	49	65	56	43	89	3	5	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGACTT...............................................................................................................................................................	24	7	18.00	126	1	0	119	2	0	0	0	0	0	1	0	0	3	0	0	0	0
.............................................TAATAGGGCTTGCGCGGT-CTGCAC-----------T.........................................................................................................................................................................................................................................................................	25	8	14.50	116	0	0	2	0	0	0	9	68	15	15	7	0	0	0	0	0	0
...........................................TATAATAGGGCTTGCGCGGT-CTGCAC-----------T.........................................................................................................................................................................................................................................................................	27	8	14.13	113	0	0	4	0	0	0	26	45	14	23	1	0	0	0	0	0	0
.......................................................TGCGCGGT-CTGCAC-----------TTAATGAGACG-AA............................................................................................................................................................................................................................................................	27	8	10.50	84	0	0	0	1	0	0	1	0	0	2	2	0	76	2	0	0	0
..........................................TTATAATAGGGCTTGCGCGGT-CTGCAC-----------T.........................................................................................................................................................................................................................................................................	28	8	7.63	61	0	0	0	1	0	0	13	28	2	17	0	0	0	0	0	0	0
.......................................TAATTATAATAGGGCTTGCGCGGT-C..........................................................................................................................................................................................................................................................................................	25	9	5.67	51	0	0	0	0	0	0	13	19	6	7	3	0	3	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GTAAG--------------------------TA............................................................................................................................................................................................................	27	8	5.63	45	0	0	0	0	0	0	2	1	10	29	2	0	1	0	0	0	0
..................................................................................TAATGAGACG-AATA-------------GTAAG--------------------------TACGTGGC......................................................................................................................................................................................................	27	8	5.13	41	0	0	0	1	0	0	3	7	7	21	1	0	1	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGA.............................................................................................................................................................................................	21	16	5.00	80	0	0	0	0	0	0	10	10	10	11	18	0	21	0	0	0	0
...........................................................................................................................................................................................TAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTC...................................................................	25	12	4.83	58	0	0	0	3	0	0	8	11	7	11	6	0	12	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAGT............................................................................	17	13	4.62	60	0	0	0	0	0	0	0	1	0	0	59	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGAC............................................................................................................................................................................................	22	14	4.57	64	0	0	0	2	0	26	0	2	4	3	15	0	11	1	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGACT................................................................................................................................................................	23	7	4.43	31	0	0	8	0	0	0	6	1	3	5	2	0	6	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGACT................................................................................................................................................................	26	7	4.29	30	0	0	16	1	0	0	4	0	3	3	0	0	3	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGACTT...............................................................................................................................................................	27	7	4.14	29	0	0	25	0	0	0	0	0	0	0	0	0	4	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGAC.................................................................................................................................................................	22	7	4.00	28	0	0	2	2	0	0	0	1	1	0	15	0	7	0	0	0	0
...........................................................................................................................................................................................TAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTCTAA................................................................	28	12	3.58	43	0	0	0	0	0	0	4	15	4	19	0	0	1	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGA..................................................................................................................................................................	24	7	3.57	25	0	0	9	2	0	0	8	1	4	1	0	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGACGCTT........................................................................................................................................................................................	26	12	3.42	41	0	0	0	2	0	0	0	0	0	2	35	0	2	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------G............................................................................................................................................................................................................................................	21	8	3.25	26	0	0	0	0	0	0	3	1	3	6	6	0	7	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGAC.................................................................................................................................................................	25	7	3.00	21	0	0	3	4	8	0	1	1	1	1	1	0	1	0	0	0	0
................T-------------------AATTAATTATAATAGGGCTTGCGCGGT-C..........................................................................................................................................................................................................................................................................................	29	1	3.00	3	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0
......................................TTAATTATAATAGGGCTTGCGCGGT-C..........................................................................................................................................................................................................................................................................................	26	9	2.89	26	0	0	0	1	0	0	5	11	4	4	0	0	1	0	0	0	0
.......................................................TGCGCGGT-CTGCAC-----------TTAATGAGACG-A.............................................................................................................................................................................................................................................................	26	8	2.88	23	0	0	0	1	0	0	1	0	0	2	11	0	8	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTC...................................................................	26	12	2.75	33	0	0	0	8	0	0	0	1	0	0	23	1	0	0	0	0	0
..................................................................................TAATGAGACG-AATA-------------GTAAG--------------------------TAC...........................................................................................................................................................................................................	22	8	2.75	22	0	0	0	0	0	20	0	0	0	0	0	0	2	0	0	0	0
...............................................................................................TA-------------GTAAG--------------------------TACGTGGCGATGACCGAC............................................................................................................................................................................................	25	8	2.63	21	0	0	0	0	0	20	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................TA-------------GTAAG--------------------------TACGTGGCGATGACC...............................................................................................................................................................................................	22	8	2.63	21	0	0	0	0	20	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................TGCGCGGT-CTGCAC-----------TTAATGAGACG-..............................................................................................................................................................................................................................................................	25	8	2.50	20	0	0	4	1	0	0	1	6	1	3	3	0	1	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAGTTC..........................................................................	19	13	2.46	32	0	0	0	0	30	0	0	0	0	0	2	0	0	0	0	0	0
......................................................TTGCGCGGT-CTGCAC-----------TTAATGAGAC................................................................................................................................................................................................................................................................	25	8	2.38	19	0	0	6	0	0	0	0	1	0	0	11	0	1	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGACTTAAG............................................................................................................................................................	27	3	2.33	7	0	0	2	1	0	0	0	1	0	1	0	0	2	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATC.....................................................................	24	12	2.33	28	0	0	0	5	0	0	0	2	0	0	21	0	0	0	0	0	0
..............................................................T-CTGCAC-----------TTAATGAGACG-AATA-------------G............................................................................................................................................................................................................................................	23	8	2.13	17	0	0	0	0	0	0	0	0	3	2	0	0	12	0	0	0	0
....................................................................................................................................................................................................................................................................................TCTCTAAAGCTTA------------------------------------ACAAG.................	18	12	2.08	25	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TATCTCTAAAGCTTA------------------------------------ACAAGTTAC.............	24	12	2.08	25	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................ACGTGGCGATGACCGACGC..........................................................................................................................................................................................	19	16	2.06	33	0	0	0	0	0	0	0	0	0	0	33	0	0	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCT....................................................................	25	12	2.00	24	0	0	0	0	0	0	0	0	0	0	24	0	0	0	0	0	0
................T-------------------AATTAATTATAATAGGGCTTGCGCGG.............................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................TCTTATCTCTAAAGCTTA------------------------------------AC....................	20	13	1.92	25	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TA------------------------------------ACAAGTTACAG----TTTCTTA	20	12	1.92	23	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0
...................................................GGCTTGCGCGGT-CTGCAC-----------TTA.......................................................................................................................................................................................................................................................................	21	11	1.91	21	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................TGAGACG-AATA-------------GTAAG--------------------------TACGTGGCGA....................................................................................................................................................................................................	26	8	1.88	15	0	0	0	0	0	0	1	1	0	11	1	0	1	0	0	0	0
......................................................TTGCGCGGT-CTGCAC-----------TTAATGAGACG-A.............................................................................................................................................................................................................................................................	27	8	1.88	15	0	0	0	0	0	0	0	0	1	0	11	0	3	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GA...........................................................................................................................................................................................................................................	22	8	1.75	14	0	0	0	0	0	0	2	3	5	3	0	0	1	0	0	0	0
..............................................................T-CTGCAC-----------TTAATGAGACG-AATA-------------GT...........................................................................................................................................................................................................................................	24	8	1.75	14	0	0	1	0	0	0	2	2	3	6	0	0	0	0	0	0	0
................................................................................................................................................GTGGCGATGACCGACGCT.........................................................................................................................................................................................	18	19	1.74	33	0	0	0	0	0	0	0	0	0	0	33	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCT....................................................................	24	12	1.58	19	0	0	0	0	0	0	1	2	1	2	2	0	11	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACT....................................................................................................................................................................	22	12	1.50	18	0	0	1	1	0	0	1	11	2	2	0	0	0	0	0	0	0
.................................................................................................................................................TGGCGATGACCGACGCT.........................................................................................................................................................................................	17	19	1.37	26	0	0	0	0	0	0	0	0	0	0	26	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGACTTAAGT...........................................................................................................................................................	28	3	1.33	4	0	0	1	0	0	0	1	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................TCTAATCTTCCAAAATCG.......................................................................................................................................................................	18	12	1.33	16	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCTTCCAAAATCGACTGACTTAAGT...........................................................................................................................................................	25	3	1.33	4	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0
.......................................TAATTATAATAGGGCTTGCGCGGT-...........................................................................................................................................................................................................................................................................................	24	9	1.33	12	0	0	0	0	0	0	2	4	0	1	0	0	3	2	0	0	0
.......................................................................................................................................................................TCTTCCAAAATCGACTGACT................................................................................................................................................................	20	7	1.29	9	0	0	0	0	0	0	1	3	1	4	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATC.....................................................................	23	12	1.25	15	0	0	0	0	0	0	2	5	2	1	0	0	3	2	0	0	0
.......................................TAATTATAATAGGGCTTGCGCGG.............................................................................................................................................................................................................................................................................................	23	9	1.22	11	0	0	0	0	0	0	0	3	1	1	0	0	6	0	0	0	0
..................................................................................................................................................................TCTAATCTTCCAAAATCGACTGACTT...............................................................................................................................................................	26	7	1.14	8	0	0	6	1	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................TCTTCCAAAATCGACTGACTT...............................................................................................................................................................	21	7	1.14	8	6	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCG..............................................................................................................................................................................................	20	16	1.13	18	0	0	0	1	0	0	0	4	2	0	5	0	6	0	0	0	0
......................................................TTGCGCGGT-CTGCAC-----------TTAATGAGACG-..............................................................................................................................................................................................................................................................	26	8	1.13	9	0	0	6	0	0	0	0	0	1	0	2	0	0	0	0	0	0
..............................................................T-CTGCAC-----------TTAATGAGACG-AATA-------------.............................................................................................................................................................................................................................................	22	8	1.13	9	0	0	0	0	0	0	0	0	1	0	1	0	7	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTA.......................................................................	22	13	1.08	14	0	0	0	0	0	0	0	3	0	1	10	0	0	0	0	0	0
.......G-TGTAGGTT-------------------AATTAATTATAATAGGGCT....................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......G-TGTAGGTT-------------------AATTAATTATAATAGGG......................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................CGCGGT-CTGCAC-----------TTAATGAGACG-AA............................................................................................................................................................................................................................................................	25	8	1.00	8	0	0	0	0	0	0	0	0	0	1	0	0	7	0	0	0	0
.......................................................TGCGCGGT-CTGCAC-----------TTAATGAGACG-AAT...........................................................................................................................................................................................................................................................	28	8	1.00	8	0	0	0	0	0	0	0	0	0	0	1	0	7	0	0	0	0
.......................................................................................................................................................................TCTTCCAAAATCGACTGACTTAAGTAT.........................................................................................................................................................	27	3	1.00	3	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0
..........GTAGGTT-------------------AATTAATTATAATAGGGCT....................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................TTGCGCGGT-CTGCAC-----------TTAATGAGACG-AA............................................................................................................................................................................................................................................................	28	8	1.00	8	0	0	0	0	0	0	0	0	0	0	1	0	7	0	0	0	0
...............................................................................................TA-------------GTAAG--------------------------TACGTGGCGATGACCGA.............................................................................................................................................................................................	24	8	1.00	8	0	0	0	1	0	0	1	0	4	0	2	0	0	0	0	0	0
...............TT-------------------AATTAATTATAATAGGGCT....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGACTTA..............................................................................................................................................................	25	7	1.00	7	0	0	1	0	0	0	0	0	0	0	0	0	6	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGA..................................................................................................................................................................	21	7	1.00	7	1	0	0	0	0	0	2	0	0	1	3	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGACGT..........................................................................................................................................................................................	24	14	0.93	13	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0
..................................................................................TAATGAGACG-AATA-------------GTAAG--------------------------TACGT.........................................................................................................................................................................................................	24	8	0.88	7	0	0	0	0	0	0	0	0	0	0	2	0	5	0	0	0	0
...............................................................................................TA-------------GTAAG--------------------------TACGTGGCGATGACCGACGC..........................................................................................................................................................................................	27	8	0.88	7	0	0	0	0	0	0	1	0	3	1	2	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACC...............................................................................................................................................................................................	19	16	0.88	14	0	0	1	0	0	0	0	2	2	1	5	0	3	0	0	0	0
..................................................................................................................G--------------------------TACGTGGCGATGACCGACGC..........................................................................................................................................................................................	21	16	0.88	14	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGACA................................................................................................................................................................	23	7	0.86	6	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	0	0
..................................................................................................................................................................TCTAATCTTCCAAAATCGACTGACT................................................................................................................................................................	25	7	0.86	6	0	0	2	1	0	0	1	0	0	1	1	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGACTA...............................................................................................................................................................	24	7	0.86	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
...............................................................................................................................................CGTGGCGATGACCGACGC..........................................................................................................................................................................................	18	20	0.85	17	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0
.................................................................................................................................................................................................TAG--------------------------------------------------------------------CAAGAGTTCTTATCTCTAAAGCT............................................................	26	15	0.80	12	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0
......................................TTAATTATAATAGGGCTTGCGCGGT-...........................................................................................................................................................................................................................................................................................	25	9	0.78	7	0	0	0	0	0	0	3	2	1	0	0	0	1	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GTAAG--------------------------..............................................................................................................................................................................................................	25	8	0.75	6	0	0	0	0	0	0	0	0	1	4	1	0	0	0	0	0	0
.............................................TAATAGGGCTTGCGCGGT-CTGCAC-----------..........................................................................................................................................................................................................................................................................	24	8	0.75	6	0	0	0	1	0	0	0	1	1	0	3	0	0	0	0	0	0
.......................................................TGCGCGGT-CTGCAC-----------TTAATGAGACG-AATA-------------.............................................................................................................................................................................................................................................	29	8	0.75	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
.......................................................TGCGCGGT-CTGCAC-----------TTAATGAGACG-AT............................................................................................................................................................................................................................................................	27	8	0.75	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
..................................................................................TAATGAGACG-AATA-------------GTAAG--------------------------TACGTGG.......................................................................................................................................................................................................	26	8	0.75	6	0	0	0	0	0	0	0	0	0	3	0	0	2	1	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GATT.........................................................................................................................................................................................................................................	24	8	0.75	6	0	0	0	0	0	0	1	1	1	1	0	0	2	0	0	0	0
.......................................................................................................................................................................TCTTCCAAAATCGACTGAC.................................................................................................................................................................	19	7	0.71	5	0	0	0	1	0	0	1	1	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGTT.................................................................................................................................................................	25	7	0.71	5	0	0	1	0	0	0	1	0	0	3	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AAGAGTTCTTATCTC...................................................................	15	17	0.71	12	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0
.......................................................................................................................................................................TCTTCCAAAATCGACTGACTTAAGTATAG--------------------------------------------------------------------C..................................................................................	30	3	0.67	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TAG--------------------------------------------------------------------CAAGAGTTCTTATCTCTAAAGC.............................................................	25	15	0.67	10	0	0	4	0	0	0	0	0	0	0	6	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGACGCTTC.......................................................................................................................................................................................	27	12	0.67	8	0	0	0	1	0	0	1	1	0	0	5	0	0	0	0	0	0
.............................................TAATAGGGCTTGCGCGGT-CTGCA......................................................................................................................................................................................................................................................................................	23	8	0.63	5	0	0	0	0	0	0	0	1	1	2	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TAAAGCTTA------------------------------------ACAAGTTACAG----TTTCTTA	27	12	0.58	7	0	0	0	0	0	0	2	1	0	4	0	0	0	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTG...................................................................................................................................................................	23	7	0.57	4	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0
.........................................ATTATAATAGGGCTTGCGCGGT-CTGCAC-----------T.........................................................................................................................................................................................................................................................................	29	7	0.57	4	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................GCTTCTAATCTTCCAAAATCGACTGACT................................................................................................................................................................	28	7	0.57	4	0	0	0	0	0	0	2	0	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGATA................................................................................................................................................................	26	7	0.57	4	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0
.....................................ATTAATTATAATAGGGCTTGCGCGGT-C..........................................................................................................................................................................................................................................................................................	27	9	0.56	5	0	0	0	0	0	0	3	0	0	0	0	0	2	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTCT..................................................................	27	12	0.50	6	0	0	0	5	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................TGAGACG-AATA-------------GTAAG--------------------------TACGTGGCGAT...................................................................................................................................................................................................	27	8	0.50	4	0	0	0	0	0	0	0	0	0	1	0	0	2	1	0	0	0
..................................................................................TAATGAGACG-AATA-------------GTAAG--------------------------TACGTGGCG.....................................................................................................................................................................................................	28	8	0.50	4	0	0	0	0	0	0	0	0	2	1	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................TAAAGCTTA------------------------------------ACAAGTTACAG----TTTC...	24	12	0.50	6	0	0	0	0	0	0	0	1	2	1	2	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACT....................................................................................................................................................................	19	12	0.50	6	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GTATT--------------------------..............................................................................................................................................................................................................	25	8	0.50	4	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0
......AG-TGTAGGTT-------------------AATTAATTATAATAGG.......................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCGATGACCGACGC..........................................................................................................................................................................................	16	20	0.50	10	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTCTA.................................................................	27	12	0.50	6	0	0	0	0	0	0	1	2	0	2	1	0	0	0	0	0	0
..............................................................T-CTGCAC-----------TTAATGAGACG-AATA-------------GTA..........................................................................................................................................................................................................................................	25	8	0.50	4	0	0	0	0	0	0	1	0	0	1	0	0	2	0	0	0	0
.......G-TGTAGGTT-------------------AATTAATTATAATAGG.......................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------A............................................................................................................................................................................................................................................	21	8	0.50	4	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GTA..........................................................................................................................................................................................................................................	23	8	0.50	4	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0
......................................................TTGCGCGGT-CTGCAC-----------TTAATGAGA.................................................................................................................................................................................................................................................................	24	8	0.50	4	0	0	0	1	0	0	0	0	0	0	2	1	0	0	0	0	0
................................................................................................................................................................................................ATAG--------------------------------------------------------------------CAAGAGTTCTTATCTC...................................................................	20	15	0.47	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGTATAG--------------------------------------------------------------------CAAGAGT............................................................................	16	13	0.46	6	0	0	0	0	0	0	0	0	1	3	2	0	0	0	0	0	0
.......................................................................................................................................................TGACCGACGCTTCTAATCTTCCAAAATC........................................................................................................................................................................	28	11	0.45	5	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0
......................................................TTGCGCGGT-CTGCAC-----------TTAATGAG..................................................................................................................................................................................................................................................................	23	11	0.45	5	0	0	0	0	0	0	0	1	1	1	2	0	0	0	0	0	0
..............................................................................................................................................ACGTGGCGATGACCGACGCT.........................................................................................................................................................................................	20	16	0.44	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
..................................................................................................................................................................TCTAATCTTCCAAAATCGACTGA..................................................................................................................................................................	23	7	0.43	3	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGACTTAA.............................................................................................................................................................	26	7	0.43	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
........................................................................................................................................................................CTTCCAAAATCGACTGACTT...............................................................................................................................................................	20	7	0.43	3	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................CTAATCTTCCAAAATCGACTGACTT...............................................................................................................................................................	25	7	0.43	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGACA...........................................................................................................................................................................................	23	14	0.43	6	0	0	0	0	0	0	0	0	0	1	0	0	5	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGACTA...............................................................................................................................................................	27	7	0.43	3	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0
..................................................................................................................................................................TCTAATCTTCCAAAATCGACTGAC.................................................................................................................................................................	24	7	0.43	3	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGACTGT..............................................................................................................................................................	25	7	0.43	3	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGG..................................................................................................................................................................	24	7	0.43	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCGATGACCGACGCTTCTAATCTT................................................................................................................................................................................	26	7	0.43	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGA......................................................................................................................................................................	20	12	0.42	5	0	0	0	1	0	0	2	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................CGTGGCGATGACCGACGCTT........................................................................................................................................................................................	20	17	0.41	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TAAAGCTTA------------------------------------ACAAGTT...............	16	13	0.38	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAG.............................................................................	16	13	0.38	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTAT......................................................................	22	13	0.38	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
.......................................................TGCGCGGT-CTGCAC-----------TTAATGAGAC................................................................................................................................................................................................................................................................	24	8	0.38	3	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGAAA...........................................................................................................................................................................................	23	16	0.38	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
.................................................................................TTAATGAGACG-AATA-------------GTAAG--------------------------TACGTGGC......................................................................................................................................................................................................	28	8	0.38	3	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0
..................................................................................TAATGAGACG-AATA-------------GTAAG--------------------------TACGTGGCGA....................................................................................................................................................................................................	29	8	0.38	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
..............................................................................................ATA-------------GTAAG--------------------------TACGTGGCGATGACCGA.............................................................................................................................................................................................	25	8	0.38	3	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	0
...........................................TATAATAGGGCTTGCGCGGT-CTGCA......................................................................................................................................................................................................................................................................................	25	8	0.38	3	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0
..............................................................T-CTGCAC-----------TTAATGAGACG-AATA-------------GTTT.........................................................................................................................................................................................................................................	26	8	0.38	3	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGAA............................................................................................................................................................................................	22	16	0.38	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GAT..........................................................................................................................................................................................................................................	23	8	0.38	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AA............................................................................................................................................................................................................................................................	18	8	0.38	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------.............................................................................................................................................................................................................................................	20	8	0.38	3	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	0	0
.......................................................TGCGCGGT-CTGCAC-----------TTAATGAGACG-AAA...........................................................................................................................................................................................................................................................	28	8	0.38	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGACGCC.........................................................................................................................................................................................	25	14	0.36	5	0	0	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................................................................................................................GCGATGACCGACGCTT........................................................................................................................................................................................	16	17	0.35	6	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0
........................................................................................................................................................................CTTCCAAAATCGACTGACTTAAGTATA........................................................................................................................................................	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCTTCCAAAATCGACTGACTTAAGTA..........................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTCTA.................................................................	28	12	0.33	4	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0
......................................................................................................................................................................ATCTTCCAAAATCGACTGACTTAAGT...........................................................................................................................................................	26	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTA...................................................................	25	12	0.33	4	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0
.........................................................................................................................................................................TTCCAAAATCGACTGACTTAAGTAT.........................................................................................................................................................	25	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................TCCAAAATCGACTGACTTAAGTATAG--------------------------------------------------------------------CA.................................................................................	28	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGAC.....................................................................................................................................................................	21	12	0.33	4	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0
........................................................................................................................................................................CTTCCAAAATCGACTGACTTAAGTAT.........................................................................................................................................................	26	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................ACGTGGCGATGACCGACG...........................................................................................................................................................................................	18	16	0.31	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATG..................................................................................................................................................................................................	16	16	0.31	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGACGA..........................................................................................................................................................................................	24	16	0.31	5	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0
..................................................................................................................G--------------------------TACGTGGCGATGACCGACGCT.........................................................................................................................................................................................	22	16	0.31	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TAAAGCTTA------------------------------------ACAAGTTACAG----T......	21	13	0.31	4	0	0	0	1	0	0	0	0	1	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAGTT...........................................................................	18	13	0.31	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGACA................................................................................................................................................................	26	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGAA.................................................................................................................................................................	25	7	0.29	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGA..............................................................................	15	14	0.29	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGACC................................................................................................................................................................	26	7	0.29	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGG..................................................................................................................................................................	21	7	0.29	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ATAGGGCTTGCGCGGT-C..........................................................................................................................................................................................................................................................................................	17	14	0.29	4	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACTGACTTA..............................................................................................................................................................	28	7	0.29	2	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0
.......................................TAATTATAATAGGGCTTGCGCGGT-CTGCAC-----------T.........................................................................................................................................................................................................................................................................	31	7	0.29	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGACC................................................................................................................................................................	23	7	0.29	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTG...................................................................................................................................................................	20	7	0.29	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................AAG--------------------------TACGTGGCGATGACCGACGC..........................................................................................................................................................................................	23	14	0.29	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TCTAAAGCTTA------------------------------------ACAAGTTACAG----TTTC...	26	11	0.27	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
................................................TAGGGCTTGCGCGGT-CTGCAC-----------TTAA......................................................................................................................................................................................................................................................................	25	11	0.27	3	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0
.......................................................................................................................................................TGACCGACGCTTCTAATCTTC...............................................................................................................................................................................	21	11	0.27	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.......................................................................................................................................................TGACCGACGCTTCTAATCTTCCAAAA..........................................................................................................................................................................	26	11	0.27	3	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0
................................................................................................................................................GTGGCGATGACCGACGC..........................................................................................................................................................................................	17	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
..................................................................................................................................................................TCTAATCTTCCAAAATCGACT....................................................................................................................................................................	21	12	0.25	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGAT...................................................................................................................................................................................................	15	16	0.25	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.............................................TAATAGGGCTTGCGCGGT-CTGCAA-----------..........................................................................................................................................................................................................................................................................	24	8	0.25	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................................TTAATGAGACG-AATA-------------GTAAG--------------------------TACGTGG.......................................................................................................................................................................................................	27	8	0.25	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.............................................TAATAGGGCTTGCGCGGT-CTGCAC-----------G.........................................................................................................................................................................................................................................................................	25	8	0.25	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
.....................................................................................TGAGACG-AATA-------------GTAAG--------------------------TACGTGGC......................................................................................................................................................................................................	24	8	0.25	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
....................................................GCTTGCGCGGT-CTGCAC-----------T.........................................................................................................................................................................................................................................................................	18	12	0.25	3	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................TCGACTGACTTAAGTATAG--------------------------------------------------------------------CAAGAGT............................................................................	26	8	0.25	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
..............................................................T-CTGCAC-----------TTAATGAGACG-AATA-------------GTAAG--------------------------TA............................................................................................................................................................................................................	29	8	0.25	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GTAT.........................................................................................................................................................................................................................................	24	8	0.25	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..................................................................................TAATGAGACG-AATA-------------GTAAG--------------------------TACGTG........................................................................................................................................................................................................	25	8	0.25	2	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
.....................................................................................TGAGACG-AATA-------------GTAAG--------------------------TACGTGGCG.....................................................................................................................................................................................................	25	8	0.25	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGA.................................................................................................................................................................................................	17	16	0.25	4	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GTAAG--------------------------T.............................................................................................................................................................................................................	26	8	0.25	2	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
..............................................................T-CTGCAC-----------TTAATGAGACG-AATA-------------GTAT.........................................................................................................................................................................................................................................	26	8	0.25	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..........................................TTATAATAGGGCTTGCGCGGT-CTGCAC-----------..........................................................................................................................................................................................................................................................................	27	8	0.25	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GTT..........................................................................................................................................................................................................................................	23	8	0.25	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.................................................................................TTAATGAGACG-AATA-------------GTAAG--------------------------TACGT.........................................................................................................................................................................................................	25	8	0.25	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0
..............................................................T-CTGCAC-----------TTAATGAGACG-TT............................................................................................................................................................................................................................................................	20	8	0.25	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATA-------------GTATA--------------------------..............................................................................................................................................................................................................	25	8	0.25	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
....................................................................................................................................................................TAATCTTCCAAAATCGACTGTT.................................................................................................................................................................	22	8	0.25	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................TGGCGATGACCGACGCTT........................................................................................................................................................................................	18	17	0.24	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
................................................................................................................................................GTGGCGATGACCGACGCTT........................................................................................................................................................................................	19	17	0.24	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
................................................TAGGGCTTGCGCGGT-CT.........................................................................................................................................................................................................................................................................................	17	13	0.23	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TAAAGCTTA------------------------------------ACAAGT................	15	13	0.23	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..........................................................................................................................................................................................TTAAGTATAG--------------------------------------------------------------------CAAGAGTTCTT........................................................................	21	13	0.23	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
......................................TTAATTATAATAGGGCTTGCGCGG.............................................................................................................................................................................................................................................................................................	24	9	0.22	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
................................................................................................................AAG--------------------------TACGTGGCGATGACCGACGCT.........................................................................................................................................................................................	24	14	0.21	3	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0
..................................................................................................................................................GGCGATGACCGACGCT.........................................................................................................................................................................................	16	19	0.21	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
................................................................................................................................................................................................ATAG--------------------------------------------------------------------CAAGAGTTCTTATCT....................................................................	19	15	0.20	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...................................................................................................................................................................................................G--------------------------------------------------------------------CAAGAGTTCTTATCT....................................................................	16	15	0.20	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.............................................................................................................................................TACGTGGCGATGACCGACGC..........................................................................................................................................................................................	20	16	0.19	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACCGT.............................................................................................................................................................................................	21	16	0.19	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
.......................................................TGCGCGGT-CTGCAC-----------TTAATGAG..................................................................................................................................................................................................................................................................	22	11	0.18	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................GATGACCGACGCTTCTAATCTTCCAAAA..........................................................................................................................................................................	28	11	0.18	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................TGACCGACGCTTCTAATCTTCCAAAAT.........................................................................................................................................................................	27	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.......................................................................................................................................................TGACCGACGCTTCTAATCTTCCAAA...........................................................................................................................................................................	25	11	0.18	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................AAGAGTTCTTATCTCT..................................................................	16	17	0.18	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................................................................................TAAG--------------------------TACGTGGCGATGACAA..............................................................................................................................................................................................	20	17	0.18	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
..............................................AATAGGGCTTGCGCGGT-CTGCAC-----------T.........................................................................................................................................................................................................................................................................	24	12	0.17	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TAAAGCTTA------------------------------------ACAAGTTACAG----TTTCT..	25	12	0.17	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................................................................................................................TTCTAATCTTCCAAAATCGACA....................................................................................................................................................................	22	12	0.17	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTCTAA................................................................	27	12	0.17	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
................................................TAGGGCTTGCGCGGT-CTGC.......................................................................................................................................................................................................................................................................................	19	12	0.17	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTATCTCT..................................................................	26	12	0.17	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................TCTAAAGCTTA------------------------------------ACAAGTTACAG----TT.....	24	12	0.17	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................TAAGTATAG--------------------------------------------------------------------CAAGAGTTCTTA.......................................................................	21	13	0.15	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................TAAAGCTTA------------------------------------ACAAGTTACAG----.......	20	13	0.15	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TAAAGCTTA------------------------------------ACAAGTTACG............	19	13	0.15	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TAAAGCTTA------------------------------------ACAAGTTACAG----TT.....	22	13	0.15	2	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................TGCGCGGT-CTGCAC-----------TT........................................................................................................................................................................................................................................................................	16	13	0.15	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...............................................................................................................................................CGTGGCGATGACCGACG...........................................................................................................................................................................................	17	20	0.15	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..................................................................................................................................................................TCTAATCTTCCAAAATCGACTGACTTAA.............................................................................................................................................................	28	7	0.14	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

ACTCATGTATT-----------------------TTTAT---TATCAATACTCTTTG----------CAT----AGGTTATGTAATAAAAAGGTATTGG-------------------------------------------------------------------------------------------------TATTTTTAATTCGTTCAATAAGCGTTATACTTACAATATAATAATAGTGCTTAACAAAAAATT--------T------------TA-AGGTAGAT--GGTCTTAGTAATTAATATTATTTTTTATGTA---------ATC-----------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................T------------TA-AGGTAGAT--GGTCTTAGTAATTAA.......................................	26	20	73.60	1472	0	0	0	0	0	0	3	2	0	1	0	0	0	0	0	0	0	0	0	0	0	4	9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	1	0	1	0	5	0	0	0	4	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	5	0	2	0	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	7	5	18	49	14	43	0	30	3	2	0	56	25	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	10	0	0	0	0	9	0	0	0	0	0	8	101	1	2	0	14	0	0	0	0	0	12	0	0	12	239	0	178	8	107	21	102	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	11	22	0	17	0	0	0	0	0	0	44	21	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	18	59	22	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................T------------TA-AGGTAGAT--GGTCTTAGTAAT..........................................	23	20	27.15	543	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	1	0	2	0	0	0	0	0	12	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	7	1	6	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	4	4	5	6	36	3	19	15	16	0	1	6	16	19	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	6	0	0	0	0	3	0	0	0	1	0	2	59	0	0	0	0	0	0	0	0	0	21	0	0	36	34	0	25	2	25	13	19	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	4	2	0	0	0	0	0	0	16	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	6	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................T------------TA-AGGTAGAT--GGTCTTAGTAATT.........................................	24	20	16.15	323	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	1	0	0	0	3	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	5	1	4	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	0	1	22	9	0	4	10	0	0	1	0	4	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	28	0	0	0	1	0	0	0	0	0	3	0	0	20	48	0	30	1	12	17	30	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	5	1	3	0	0	0	0	0	0	7	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0
......................................T---TATCAATACTCTTTG----------CAT----AGGTTA...........................................................................................................................................................................................................................................................................	25	20	10.50	210	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	0	86	0	14	10	23	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................T------------TA-AGGTAGAT--GGTCTTAGTAATTA........................................	25	20	9.35	187	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	1	3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	7	1	0	1	0	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	20	2	12	1	7	1	0	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	24	0	0	0	0	0	0	0	0	0	1	0	0	2	16	0	16	0	9	3	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................T------------TA-AGGTAGAT--GGTCTTAGTAATTAATA.....................................	28	20	9.05	181	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	8	2	3	0	2	0	0	1	2	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	55	0	16	7	25	2	21	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	7	3	0	0	0	0	0	0
....................................TAT---TATCAATACTCTTTG----------CAT----AGGT.............................................................................................................................................................................................................................................................................	25	20	6.55	131	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	109	0	0	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TT--------T------------TA-AGGTAGAT--GGTCTTAGTAAT..........................................	25	20	5.85	117	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	8	0	2	1	0	3	1	0	5	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	7	0	0	1	0	2	0	0	0	0	0	1	13	0	5	5	2	0	0	0	0	0	1	0	0	1	8	0	6	0	4	4	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................TAATTCGTTCAATAAGCGTTATACT........................................................................................................................	25	20	5.60	112	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	0	0	2	1	1	1	0	0	3	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	74	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
......................................T---TATCAATACTCTTTG----------CAT----AGGT.............................................................................................................................................................................................................................................................................	23	20	4.50	90	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	4	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	1	1	0	0	0	0	1	0	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	21	5	0	6	9	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TA-AGGTAGAT--GGTCTTAGTAATTAA.......................................	25	20	3.85	77	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	1	0	0	0	0	0	1	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	2	3	0	1	0	2	0	0	0	0	0	3	0	0	0	2	0	6	0	6	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................T--------T------------TA-AGGTAGAT--GGTCTTAGTAATTAA.......................................	27	20	2.85	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	3	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	4	0	0	0	0	0	0	0	0	1	9	0	4	0	5	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................T--------T------------TA-AGGTAGAT--GGTCTTAGTAAT..........................................	24	20	2.85	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	2	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	2	0	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	7	1	2	0	0	0	0	0	0	0	0	3	2	0	3	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................TA-AGGTAGAT--GGTCTTAGTAATTAATA.....................................	27	20	1.25	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0
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................................................................................................................................................................................................................................................................ATT--------T------------TA-AGGTAGAT--GGTCTTA...............................................	21	20	1.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0
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...........................................................................................................................................................................................................................................................................T------------TA-AGGTAGAT--GGTCTTAGTAATTAC.......................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................ATTCGTTCAATAAGCGTTATA..........................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
.........TT-----------------------TTTAT---TATCAATACTCTTTG----------CAT----A................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................AATT--------T------------TA-AGGTAGAT--GGTCTTAGT.............................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................T---TATCAATACTCTTTG----------CAT----AGGTATC..........................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TTTATTTG-TATA-----------------------CAA---TTATAATAGAATTTGTGCGGT-CTGCAC-----------TTAATGAGACG-AATTTG--------TATGTTTG--------------------------TGCGTGGCGATGAACGACGCTTTTGATCTCCAAATATCGACTGCCT--ATTACAG----------------AATAG---------------------------------------------------ATCTCTTATCTTTA-----------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................TATCGACTGCCT--ATTACAG----------------AATAG---------------------------------------------------ATC............................................................................	27	18	0.11	2	0	0	0	0	0	0	2
..................................................................................................................................................................TTTGATCTCCAAATATCGACTGCC.................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0	0
.............................................TAATAGAATTTGTGCGGT-CTGCAC-----------T.........................................................................................................................................................................................................................................................................	25	14	0.07	1	0	1	0	0	0	0	0
........................................................................................GACG-AATTTG--------TATGTTTG--------------------------TGT...........................................................................................................................................................................................................	21	18	0.06	1	0	0	0	1	0	0	0
.................................................................TGCAC-----------TTAATGAGACG-AATTTG--------TA..............................................................................................................................................................................................................................................	24	19	0.05	1	1	0	0	0	0	0	0
.........................................................................................................................................................................TCCAAATATCGACTGCCT--ATTACAG----------------AA.....................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0	0
..................................................................................................................................................................TTTGATCTCCAAATATCGACTGCCT--A.............................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0

droYak3

ACTCATGTATT-----------------------TTTAT------CAACACTCTGTT----------CAT----AGGTTATGTAATAAAAAGGTATTGG-------------------------------------------------------------------------------------------------TATTTTTAATTTGTTCAATAAGCGTTATACTTACAATATAATAATAATGCTTAACAAACTATT--------T------------TA-AGGTAAAATTAATA-------------TTATATTTTATGTA---------ATC-----------

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

ACTCATCTGTT-----------------------TTTGT---CTTCAATACTCTTTG----------CAC----AAATTATATAACGAGGA-ATAAAAG-------------------------------------------------------------------------------------------------AATTTTCGATTCGTTCAATAAGCGTTATACTTACAATTAATTAATAGTGCTTAAGGAAAGGTT----ACATA------------TA-TGATAAATTGGGTCTTATGTATTAAT--------ATA----AAAA-----GTG-----------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGTCATGTGTT-----------------------TTTGT---CATCAATACTCTTGG----------CAC----AAATTATATAATGAGGA-ATATAAG-------------------------------------------------------------------------------------------------AATTTTCGATTCGTTCAATAAGAGTTATACTCACAATTTATTAATAGTGCTTAAGGAAAGGGTGCATACATA------------TA-TGGTAAATTGGGTCTTACGA--------------------AAAAA--GTGAAA-----------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTTCCTTA-TTCAGGTT-------------------TTT---ACTTAAGAC-----GCGCGGTACTGCGC------------GAATGAGAAG-ACTTAG-----------G-TTT--------------------------CGGGAGGCGATGACCGTCACGATTTATTTCCAAAATTCAACTAAAT---------------------------------------------------------------------ACTAAGTACATAAATTCTTAT----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ATTCATGTGTT-----------------------TTTGT-------------CTTTG----------CAC----AAATGAATTTTTAAGAA-A--TAGT-------------------------------------------------------------------------------------------------TATTTTCGTTTCGTTCAATATGCGTTATACTTACAATGAATTAACCTAAATTAACGTAGAACT--------A------------TA-AAGTTA-----------TGATTTAATGTATTATTTTATGTAAATT--------------ATGTA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTGTTTAG-CGTG--------------------------------------------------------------AACGATTTATTAGGTA-A--TATCTATCCACGTGGTTTTGTGGGTTGAGTTTTAAT--ATGAGTCTTGCGTGGTGATGACCGGCGCATTTGATCTACAAAAATCGACTGAACTAGGTACAG---------------------------------------------------------------------AAATGTTCTTATCTCTAATGTTAAATCTACTG-------------A---------CGAAAACATAGTACCGAAATATTCTTA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGATGA.................................................................................................................................................................................................	25	20	1.85	37	35	0	2	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGATG..................................................................................................................................................................................................	24	20	1.65	33	28	5	0	0	0	0
.....................................................................................TAGGTA-A--TATCTATCCACGTGGTTTTG........................................................................................................................................................................................................................................	27	17	1.24	21	16	5	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGATGACC...............................................................................................................................................................................................	27	20	0.95	19	14	5	0	0	0	0
..................................................................................................................................T--ATGAGTCTTGCGTGGTGATGACCGG.............................................................................................................................................................................................	26	20	0.55	11	11	0	0	0	0	0
..................................................................................................................................T--ATGAGTCTTGCGTGGTGATGACC...............................................................................................................................................................................................	24	20	0.50	10	1	9	0	0	0	0
........................................................................................................................TGAGTTTTAAT--ATGAGTCTTGCGTGG.......................................................................................................................................................................................................	26	20	0.40	8	6	2	0	0	0	0
............................................................................................................................TTTTAAT--ATGAGTCTTGCGTGGTGA....................................................................................................................................................................................................	25	20	0.30	6	4	2	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGATGAC................................................................................................................................................................................................	26	20	0.30	6	5	1	0	0	0	0
.....................................................................................TAGGTA-A--TATCTATCCACGTGGTTT..........................................................................................................................................................................................................................................	25	17	0.29	5	4	1	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGATGACCG..............................................................................................................................................................................................	28	20	0.25	5	5	0	0	0	0	0
........................................................................................................................TGAGTTTTAAT--ATGAGTCTTGCGTG........................................................................................................................................................................................................	25	20	0.25	5	5	0	0	0	0	0
..................................................................................TATTAGGTA-A--TATCTATCCACGTGG.............................................................................................................................................................................................................................................	25	20	0.25	5	1	4	0	0	0	0
..............................................................................................................................................................................................................................................................................................TAAATCTACTG-------------A---------CGAAAACATAGTACC............	27	20	0.25	5	0	5	0	0	0	0
...................................................................................................................TGGGTTGAGTTTTAAT--ATGAGTCTTG............................................................................................................................................................................................................	26	20	0.20	4	4	0	0	0	0	0
.....TAG-CGTG--------------------------------------------------------------AACGATTTATTAGGTA-A--TATC........................................................................................................................................................................................................................................................	28	20	0.20	4	3	1	0	0	0	0
............................................................................................................................TTTTAAT--ATGAGTCTTGCGTGGTG.....................................................................................................................................................................................................	24	20	0.20	4	1	3	0	0	0	0
..................................................................................................................................T--ATGAGTCTTGCGTGGTGATGACCGGC............................................................................................................................................................................................	27	20	0.20	4	2	1	1	0	0	0
.............................................................................................................................TTTAAT--ATGAGTCTTGCGTGGTGA....................................................................................................................................................................................................	24	20	0.15	3	3	0	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGAT...................................................................................................................................................................................................	23	20	0.15	3	2	1	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGA....................................................................................................................................................................................................	22	20	0.15	3	0	2	0	0	1	0
.........................................................................................................................GAGTTTTAAT--ATGAGTCTTGCGTGGT......................................................................................................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
.............................................................................................................................TTTAAT--ATGAGTCTTGCGTGGTGAT...................................................................................................................................................................................................	25	20	0.15	3	3	0	0	0	0	0
..............................................................................................................................TTAAT--ATGAGTCTTGCGTGGTGATG..................................................................................................................................................................................................	25	20	0.15	3	2	1	0	0	0	0
..................................................................................................................................T--ATGAGTCTTGCGTGGTGATGAC................................................................................................................................................................................................	23	20	0.15	3	1	2	0	0	0	0
................................................................................................................................AAT--ATGAGTCTTGCGTGGTGATGACC...............................................................................................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
.........................................................................................................................GAGTTTTAAT--ATGAGTCTTGCG..........................................................................................................................................................................................................	22	20	0.15	3	2	1	0	0	0	0
.............................................................................................................................TTTAAT--ATGAGTCTTGCGTGGTGATGA.................................................................................................................................................................................................	27	20	0.15	3	3	0	0	0	0	0
.....................................................................................TAGGTA-A--TATCTATCCACGTGGTTTT.........................................................................................................................................................................................................................................	26	17	0.12	2	2	0	0	0	0	0
.....................................................................................TAGGTA-A--TATCTATCCACGTGGTTTTGT.......................................................................................................................................................................................................................................	28	17	0.12	2	0	2	0	0	0	0
..................................................................................TATTAGGTA-A--TATCTATCCACGTGGT............................................................................................................................................................................................................................................	26	17	0.12	2	1	1	0	0	0	0
.....................................................................................TAGGTA-A--TATCTATCCACGTGGT............................................................................................................................................................................................................................................	23	17	0.12	2	0	2	0	0	0	0
....................................................................................TTAGGTA-A--TATCTATCCACGTGGTTT..........................................................................................................................................................................................................................................	26	17	0.12	2	1	1	0	0	0	0
.....................................................................................................................................................................GATCTACAAAAATCGACTGAACTAG.............................................................................................................................................................	25	9	0.11	1	0	0	0	0	1	0
......................................................................................................................................................................ATCTACAAAAATCGACTGAACTAGGT...........................................................................................................................................................	26	9	0.11	1	0	0	1	0	0	0
.........................................................................................TA-A--TATCTATCCACGTGGTTTTGTGG.....................................................................................................................................................................................................................................	26	18	0.11	2	2	0	0	0	0	0
..........................................................................................................................................................................ACAAAAATCGACTGAACTAGGTACAG---------------------------------------------------------------------A.................................................................................	27	9	0.11	1	1	0	0	0	0	0
.........................................................................................TA-A--TATCTATCCACGTGGTTTTGTG......................................................................................................................................................................................................................................	25	18	0.11	2	2	0	0	0	0	0
.......................................................................................................................................................................TCTACAAAAATCGACTGAACTAGGTACA........................................................................................................................................................	28	9	0.11	1	1	0	0	0	0	0
....................................................................................................................................................................TGATCTACAAAAATCGACTGAACTAGG............................................................................................................................................................	27	9	0.11	1	1	0	0	0	0	0
........................................................................................GTA-A--TATCTATCCACGTGGTTTTGTG......................................................................................................................................................................................................................................	26	18	0.11	2	1	1	0	0	0	0
.........................................................................................................................................................................TACAAAAATCGACTGAACTAGGTACA........................................................................................................................................................	26	9	0.11	1	1	0	0	0	0	0
....................................................................................................................................................................................ACTGAACTAGGTACAG---------------------------------------------------------------------AAATGTT...........................................................................	23	9	0.11	1	0	0	1	0	0	0
................................................................................................................................................................................ATCGACTGAACTAGGTACAG---------------------------------------------------------------------AAATGTTC..........................................................................	28	9	0.11	1	0	1	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGATGACCGG.............................................................................................................................................................................................	29	20	0.10	2	1	1	0	0	0	0
.............................................................................................................................TTTAAT--ATGAGTCTTGCGTGGTGATG..................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................TTGAGTTTTAAT--ATGAGTCTTGCGTGG.......................................................................................................................................................................................................	27	20	0.10	2	2	0	0	0	0	0
............................................................................................................................................................GGCGCATTTGATCTACAAAAATCGACT....................................................................................................................................................................	27	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................GAGTTTTAAT--ATGAGTCTTGCGTGG.......................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
.TGTTTAG-CGTG--------------------------------------------------------------AACGATTTATTAGG..................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	2	0	0	0
...............................................................................................................................................................................................TACAG---------------------------------------------------------------------AAATGTTCTTATCTCTAATGT.............................................................	26	20	0.10	2	2	0	0	0	0	0
.................................................................................................................................AT--ATGAGTCTTGCGTGGTGATGAC................................................................................................................................................................................................	24	20	0.10	2	1	0	1	0	0	0
.........................................................................................................................GAGTTTTAAT--ATGAGTCTTGCGTGGTA.....................................................................................................................................................................................................	27	20	0.10	2	2	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................CTACTG-------------A---------CGAAAACATAGTACCGAAATA......	28	20	0.10	2	0	2	0	0	0	0
.........................................................................................................................GAGTTTTAAT--ATGAGTCTTGCGTGGTG.....................................................................................................................................................................................................	27	20	0.10	2	2	0	0	0	0	0
..................................................................................................................................T--ATGAGTCTTGCGTGGTGATGACCGGCG...........................................................................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
..............................................................................................................................TTAAT--ATGAGTCTTGCGTGGTGATGAC................................................................................................................................................................................................	27	20	0.10	2	2	0	0	0	0	0
...................................................................................................................TGGGTTGAGTTTTAAT--ATGAGTCTTGCG..........................................................................................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
................................................................................................................................AAT--ATGAGTCTTGCGTGGTGATGAC................................................................................................................................................................................................	25	20	0.10	2	1	1	0	0	0	0
..............................................................................................................................TTAAT--ATGAGTCTTGCGTGGTGA....................................................................................................................................................................................................	23	20	0.10	2	1	1	0	0	0	0
..................................................................................TATTAGGTA-A--TATCTATCCACGTGGTT...........................................................................................................................................................................................................................................	27	17	0.06	1	1	0	0	0	0	0
.................................................................................TTATTAGGTA-A--TATCTATCCACGTGGTT...........................................................................................................................................................................................................................................	28	17	0.06	1	0	1	0	0	0	0
................................................................................TTTATTAGGTA-A--TATCTATCCACGTGGT............................................................................................................................................................................................................................................	28	17	0.06	1	0	1	0	0	0	0
......................................................................................AGGTA-A--TATCTATCCACGTGGTTTTG........................................................................................................................................................................................................................................	26	17	0.06	1	1	0	0	0	0	0
.................................................................................TTATTAGGTA-A--TATCTATCCACGTGGT............................................................................................................................................................................................................................................	27	17	0.06	1	1	0	0	0	0	0
.....................................................................................TAGGTA-A--TATCTATCCACGTGGTTC..........................................................................................................................................................................................................................................	25	17	0.06	1	0	1	0	0	0	0
.........................................................................................................CGTGGTTTTGTGGGTTGAGTT.............................................................................................................................................................................................................................	21	18	0.06	1	0	1	0	0	0	0
.........................................................................................TA-A--TATCTATCCACGTGGTTTTGT.......................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0
.........................................................................................TA-A--TATCTATCCACGTGGTTTTG........................................................................................................................................................................................................................................	23	18	0.06	1	1	0	0	0	0	0
........................................................................................GTA-A--TATCTATCCACGTGGTT...........................................................................................................................................................................................................................................	21	18	0.06	1	0	1	0	0	0	0
..........................................................................................................GTGGTTTTGTGGGTTGAG...............................................................................................................................................................................................................................	18	18	0.06	1	1	0	0	0	0	0
........................................................................................GTA-A--TATCTATCCACGTGGTTT..........................................................................................................................................................................................................................................	22	18	0.06	1	0	1	0	0	0	0
.........................................................................................TA-A--TATCTATCCACGTGGTTTTGTGGGT...................................................................................................................................................................................................................................	28	18	0.06	1	1	0	0	0	0	0
.........................................................................................TA-A--TATCTATCCACGTGGTTTTGTGGG....................................................................................................................................................................................................................................	27	18	0.06	1	1	0	0	0	0	0
...............................................................................................TATCTATCCACGTGGTTTTGTGGGT...................................................................................................................................................................................................................................	25	18	0.06	1	1	0	0	0	0	0
....................................................................................................................................................................TGATCTACAAAAATCGACTGAACT...............................................................................................................................................................	24	19	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................ATTTGATCTACAAAAATCGACTGAAC................................................................................................................................................................	26	19	0.05	1	0	1	0	0	0	0
....................................................................................................................GGGTTGAGTTTTAAT--ATGAGTCTT.............................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
........................................................................................................................TGAGTTTTAAT--ATGAGTCTTGCGTGGTG.....................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.................................................................................TTATTAGGTA-A--TATCTATCCACGTG..............................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................GATGACCGGCGCATTTGATCTACAAA............................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.....TAG-CGTG--------------------------------------------------------------AACGATTTATTAGGA.................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................ATGACCGGCGCATTTGATCTACAAA............................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................TGACCGGCGCATTTGATCTACAAA............................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................TTTAAT--ATGAGTCTTGCGTGGTGATGACC...............................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................GATGACCGGCGCATTTGATCTACA..............................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTG.....................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGC......................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................TCTACTG-------------A---------CGAAAACATAGTACCGAAA........	27	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................ATCTACTG-------------A---------CGAAAACATAGTACCGA..........	26	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGAA...................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................AGTCTTGCGTGGTGATGACCGG.............................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................GCGCATTTGATCTACAAAAATCG.......................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................TGAGTCTTGCGTGGTGATGACCGGCG...........................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................TGAGTCTTGCGTGGTGATGACCG..............................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................TGAGTCTTGCGTGGTGATGACCGGCGCA.........................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................TTATCTCTAATGTTAAATCTACTG-------------A---------CG.........................	27	20	0.05	1	1	0	0	0	0	0
....................................................................................................................GGGTTGAGTTTTAAT--ATGAGTCTTGCG..........................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
................................................................................................................................AAT--ATGAGTCTTGCGTGGTGA....................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................ATGAGTCTTGCGTGGTGATGACC...............................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................TACAG---------------------------------------------------------------------AAATGTTCTTATCTCTAATGC.............................................................	26	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................GGTTGAGTTTTAAT--ATGAGTCTTGCGTG........................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................CTTATCTCTAATGTTAAATCTACT...................................................	24	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................GAGTCTTGCGTGGTGATGACCG..............................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................CTTATCTCTAATGTTAAATCTACTG-------------A---------C..........................	27	20	0.05	1	0	1	0	0	0	0
.......G-CGTG--------------------------------------------------------------AACGATTTATTAGGTA-A--TATC........................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
..........................................................................................................................................TCTTGCGTGGTGATGACCGGCGC..........................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
................................................................................................................................AAT--ATGAGTCTTGCGTGGTGATG..................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................GAGTCTTGCGTGGTGATGACCGGC............................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.....TAG-CGTG--------------------------------------------------------------AACGATTTATTAGGT.................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................TGACCGGCGCATTTGATCTACAAAAA..........................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................TGATGACCGGCGCATTTGATC..................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................TTGAGTTTTAAT--ATGAGTCTTGCGTG........................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................T--ATGAGTCTTGCGTGGTGATGACCGGCGC..........................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................TTGAGTTTTAAT--ATGAGTCTTGCGTGGT......................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
............................................................................................................................TTTTAAT--ATGAGTCTTGCGTGGTGAT...................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................TACTG-------------A---------CGAAAACATAGTACCGAAAT.......	26	20	0.05	1	0	1	0	0	0	0
...TTTAG-CGTG--------------------------------------------------------------AACGATTTATTAGGTA-A--............................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................GGTGATGACCGGCGCATTTGATC..................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................TGAGTCTTGCGTGGTGATGAC................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................AGTCTTGCGTGGTGATGACCGGCG...........................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.............................................................................................................................TTTAAT--ATGAGTCTTGCGTGGTGG....................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................ACTG-------------A---------CGAAAACATAGTACCGAAATA......	26	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................AATCTACTG-------------A---------CGAAAACATAGTACCGAAA........	29	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................TTTAAT--ATGAGTCTTGCGTGGTG.....................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...................................................................................................................TGGGTTGAGTTTTAAT--ATGAGTCTTGC...........................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................TTTAAT--ATGAGTCTTGCGTGG.......................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
............................................................................................................................TTTTAAT--ATGAGTCTTGCGTGG.......................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................AGTTTTAAT--ATGAGTCTTGCGTG........................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................GTGATGACCGGCGCATTTGATCTACA..............................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
................................................................................................................TTGTGGGTTGAGTTTTAAT--ATGAG.................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
...................................................................................................................TGGGTTGAGTTTTAAT--ATGAGTCT..............................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................CTG-------------A---------CGAAAACATAGTACCGAAA........	23	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................TCTTATCTCTAATGTTAAATCTACTG-------------A---------C..........................	28	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................GTGGTGATGACCGGCGCA.........................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
...........................................................................AACGATTTATTAGGTA-A--TATCTATCCACG................................................................................................................................................................................................................................................	29	20	0.05	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................CTG-------------A---------CGAAAACATAGTACCGAAATA......	25	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................GTTTTAAT--ATGAGTCTTGCGTGGTG.....................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................TGGTGATGACCGGCGCATTTGATCTA................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................TGATGACCGGCGCATTTGATCTACAAAAA..........................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................ATGAGTCTTGCGTGGTGATGACCGGCG...........................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................TGAGTCTTGCGTGGTGATGACCGGCGC..........................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................GGTTGAGTTTTAAT--ATGAGTCTTGC...........................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................T--ATGAGTCTTGCGTGGTGATGACCG..............................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................TACTG-------------A---------CGAAAACATAGTACC............	21	20	0.05	1	0	1	0	0	0	0
............G--------------------------------------------------------------AACGATTTATTAGGTA-A--TATCT.......................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
............................................................................................................................TTTTAAT--ATGAGTCTTGCGTGGT......................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................AATCTACTG-------------A---------CGAAAACATAGTACC............	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................TGGTGATGACCGGCGCATTTGATCT.................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................TGATGACCGGCGCATTTGATCTACAAA............................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0
.................................................................................................................TGTGGGTTGAGTTTTAAT--ATGAGTCT..............................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................GAGTCTTGCGTGGTGATGACCGG.............................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................GAGTCTTGCGTGGTGATGACCGGCG...........................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.TGTTTAG-CGTG--------------------------------------------------------------AACGATTTATTAGGT.................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................TGACCGGCGCATTTGATC..................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
...............................................................................................................TTTGTGGGTTGAGTTTTAAT--ATGAGT................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................................................GCATTTGATCTACAAAAATCGACTT...................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGATGT.................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
.................................................................................................................TGTGGGTTGAGTTTTAAT--ATGAGTCC..............................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.....TAG-CGTG--------------------------------------------------------------AACGATTTATTAGGTA-A--TA..........................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
...............................................................................................................................TAAT--ATGAGTCTTGCGTGGTGATGACT...............................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
...................................................................................................................TGGGTTGAGTTTTAAT--ATGAGTCTT.............................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
..................................................................................................................GTGGGTTGAGTTTTAAT--ATGAGTCT..............................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...............................................................................................................TTTGTGGGTTGAGTTTTAAT--ATGAGC................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.................................................................................................................TGTGGGTTGAGTTTTAAT--ATGAGTCTT.............................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................GAGTTTTAAT--ATGAGTCTTGCGTGGTGA....................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0

droBip1

TTTGTTAA-T--AGGTTTTATTTATTCGGTCCAGCTAGA-----------------CAGCGGTCTAGCGT----GCCCGATTAATTATATA-A--TAATTATCCACGTGGGTTTGTGAGTTGAGATTTTATTGA-------TGACCGGTGACGACCGGCGCATGTGATCTCCAAATATCGACTGACT---GTACAG--------------------------------------------------------------------AAAATGTTCTTATCTGTAATGTTAAATCTATTA-------------A---------CGAAAACAAAGTACCG-----------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TTATTTAT-TTC----------------------ACTAT------CAATCA-ACTTG----------CAAGACTAAATTGTGTTTTAGGTG-GGGTTTT-----------------------------------------------------G-------------------------------------------AG-TTTTTTTTTTTTTAATGAACACTCTACTCACA--------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
TTATTTAT-TTC----------------------ACTAT------CAATCA-ACT....................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	4	0	0	0	0	0	0	0	0
..........TC----------------------ACTAT------CAATCA-ACTTG----------CAAGAC..................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.....TAT-TTC----------------------ACTAT------CAATCA-ACTTG----------CA......................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.........TTC----------------------ACTAT------CAATCA-ACTTG----------CAAGACT.................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......T-TTC----------------------ACTAT------CAATCA-ACTTG----------CAAGAC..................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..ATTTAT-TTC----------------------ACTAT------CAATCA-ACT....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TTC----------------------ACTAT------CAATCA-ACTTG----------CAAGAC..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.....TAT-TTC----------------------ACTAT------CAATCA-ACT....................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TC----------------------ACTAT------CAATCA-ACTTG----------CAAGACTA................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.TATTTAT-TTC----------------------ACTAT------CAATCA-ACT....................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TTC----------------------ACTAT------CAATCA-ACTTG----------CAAGACTA................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........TTC----------------------ACTAT------CAATCA-ACTTG----------CAAGA...................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......AT-TTC----------------------ACTAT------CAATCA-ACTTG----------CA......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........TC----------------------ACTAT------CAATCA-ACTTG----------CAAGA...................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....TAT-TTC----------------------ACTAT------CAATCA-ACTTG----------CAAGA...................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................TTTTTTTTTTTAATGAACACTCTAC.........................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droWil2

ATTCAAAAATT-T--T------------------TCTGT---TGCAAAGACACTTTA----------CAA----ACACTTTTTGTTT---A-AATTTTT-----------------------------------------------------G-------------------------------------------TA-TTTATTTACTTTAAATAAGCACTCTACTCACA--------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droMoj3

GTTGTTAGATG-----------------------TTAGT-----------------GTGCGGTGTTGCAC-----------AAAATGAGTAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGACGACCGACGTTCTTTATTATCAAAAATCAACTAAA----GTACAG-----------------------------------------------------------------TGACATAAATTCTTATATCCAAAGCT------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....................................................................................TGAGTAG-ACTTCA-----------ATAAT--------------------------CCCGTGG.......................................................................................................................................................................................................	25	20	13.85	277	277	0	0	0	0	0
......................................................................................GAGTAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCG.....................................................................................................................................................................................................	26	20	3.40	68	68	0	0	0	0	0
.........................................................................................TAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGACGAC................................................................................................................................................................................................	28	20	2.45	49	47	0	0	0	1	1
.........................................................................................TAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGA....................................................................................................................................................................................................	24	20	1.40	28	28	0	0	0	0	0
................................................................TTGCAC-----------AAAATGAGTAG-ACTTCA-----------ATAA.........................................................................................................................................................................................................................................	27	20	1.25	25	25	0	0	0	0	0
.....................................................................................TGAGTAG-ACTTCA-----------ATAAT--------------------------CCCGTG........................................................................................................................................................................................................	24	20	1.10	22	22	0	0	0	0	0
......................................................................................................................................................................................TAAA----GTACAG-----------------------------------------------------------------TGACATAAATTCTTAT......................................................................	26	20	0.65	13	13	0	0	0	0	0
.........................................................................................TAG-ACTTCA-----------ATAAT--------------------------CCCGTGG.......................................................................................................................................................................................................	21	20	0.45	9	9	0	0	0	0	0
......................................................................................GAGTAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGAC...................................................................................................................................................................................................	28	20	0.45	9	9	0	0	0	0	0
.........................................................TGCGGTGTTGCAC-----------AAAATGAGTAG-AC............................................................................................................................................................................................................................................................	26	20	0.40	8	8	0	0	0	0	0
...................................................................................................................................................................TTTATTATCAAAAATCAACTAAA----GTA..........................................................................................................................................................	26	20	0.35	7	7	0	0	0	0	0
.................................................................TGCAC-----------AAAATGAGTAG-ACTTCA-----------ATA..........................................................................................................................................................................................................................................	25	20	0.30	6	6	0	0	0	0	0
.....................................................................................TGAGTAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCG.....................................................................................................................................................................................................	27	20	0.25	5	0	0	0	0	5	0
..........................................................................................................................................................................TCAAAAATCAACTAAA----GTACAG-----------------------------------------------------------------TGACA.................................................................................	27	20	0.25	5	5	0	0	0	0	0
....TTAGATG-----------------------TTAGT-----------------GTGCGGTGT..........................................................................................................................................................................................................................................................................................	21	20	0.20	4	2	0	2	0	0	0
...................................................................................AATGAGTAG-ACTTCA-----------ATAAT--------------------------CCCG..........................................................................................................................................................................................................	24	20	0.20	4	4	0	0	0	0	0
.........................................................................................TAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGACGACC...............................................................................................................................................................................................	29	20	0.15	3	3	0	0	0	0	0
..............................................................................................................ATAAT--------------------------CCCGTGGCGACGACCG..............................................................................................................................................................................................	21	20	0.15	3	0	0	3	0	0	0
..................................................................................................................T--------------------------CCCGTGGCGACGACCGACGTTCT.......................................................................................................................................................................................	24	20	0.15	3	3	0	0	0	0	0
.............................................................................................................................................CCCGTGGCGACGACCGACGTTCTTTA....................................................................................................................................................................................	26	20	0.15	3	3	0	0	0	0	0
...............................................................................................................................................................................AATCAACTAAA----GTACAG-----------------------------------------------------------------TGACATA...............................................................................	24	20	0.15	3	3	0	0	0	0	0
................................................................TTGCAC-----------AAAATGAGTAG-ACTTCA-----------A............................................................................................................................................................................................................................................	24	20	0.15	3	2	0	0	0	0	1
...............................................................................................................................................CGTGGCGACGACCGACGTTCT.......................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
.............................................................................................................................................CCCGTGGCGACGACCGACGTTC........................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
..............................................................TGTTGCAC-----------AAAATGAGTAG-ACTTCA-----------ATA..........................................................................................................................................................................................................................................	28	20	0.10	2	2	0	0	0	0	0
...............................................................................................TTCA-----------ATAAT--------------------------CCCGTGGCGACGACC...............................................................................................................................................................................................	24	20	0.10	2	2	0	0	0	0	0
.......................................................................................................................................................................................AAA----GTACAG-----------------------------------------------------------------TGACATAAATTCTTAT......................................................................	25	20	0.10	2	2	0	0	0	0	0
................................................................................................TCA-----------ATAAT--------------------------CCCGTGGCGACGA.................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2
................................................................TTGCAC-----------AAAATGAGTAG-ACTTC.........................................................................................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
................................................................TTGCAC-----------AAAATGAGTAG-ACTT..........................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
..................................................................................................................................................................................................AG-----------------------------------------------------------------TGACATAAATTCTTATATCCAAAGCT------------------------------------------------------------	28	20	0.10	2	2	0	0	0	0	0
..TGTTAGATG-----------------------TTAGT-----------------GTGCGGT............................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
GTTGTTAGATG-----------------------TTAGT-----------------GTGCG..............................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................................TGACATAAATTCTTATATCCAAAGC.............................................................	25	20	0.10	2	2	0	0	0	0	0
......................................T-----------------GTGCGGTGTTGCAC-----------AAAATGAGTAG-ACT...........................................................................................................................................................................................................................................................	29	20	0.10	2	2	0	0	0	0	0
.............................................................................................ACTTCA-----------ATAAT--------------------------CCCGTGGCGA....................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.......................................................................................................................................................................TTATCAAAAATCAACTAAA----GTACAG-----------------------------------------------------------------C.....................................................................................	26	20	0.05	1	0	0	0	0	1	0
.........................................................................................TAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGACGA.................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1
........................................................GTGCGGTGTTGCAC-----------AAAATGAGTAG-ACT...........................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.........................................................................................TAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGACC..................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
.................................................................................................CA-----------ATAAT--------------------------CCCGTGGCGACGACC...............................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.TTGTTAGATG-----------------------TTAGT-----------------GTGCGGTGTTGAT......................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
........ATG-----------------------TTAGT-----------------GTGCGGTGTTGCA......................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................TTTATTATCAAAAATCAACT....................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..................................................................................................................T--------------------------CCCGTGGCGACGACCGACGTTCTTT.....................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.......................................................................................AGTAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGACG..................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
...GTTAGATG-----------------------TTAGT-----------------GTGCGGTGT..........................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
GTTGTTAGATG-----------------------TTAGT-----------------GTGCGGTGTT.........................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...........................................................CGGTGTTGCAC-----------AAAATGAGTAG-ACT...........................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
................................................................TTGCAC-----------AAAATGAGTAG-ACTTCA-----------.............................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0
.................................................................................................................................................................................TCAACTAAA----GTACAG-----------------------------------------------------------------TGACATAAATT...........................................................................	26	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................ACCGACGTTCTTTATTATCAA.............................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................GTGGCGACGACCGACGTTCTTTATTATC...............................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	1
....TTAGATG-----------------------TTAGT-----------------GTGCGGTGTTGCAA-----------..........................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	1
..................................................................................................................T--------------------------CCCGTGGCGACGACCGACGTT.........................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.....................................................................................TGAGTAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCA.....................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.........................................................TGCGGTGTTGCAC-----------AAAATGAGTAG-A.............................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................CCGTGGCGACGACCGACGTTCT.......................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.........................................................................................TAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGACGTT................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
...GTTAGATG-----------------------TTAGT-----------------GTGCGGTT...........................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
........................................................................................GTAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGA....................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
...................................................................................................................................................................TTTATTATCAAAAATCAACTAAA----G............................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................CAAAAATCAACTAAA----GTACAG-----------------------------------------------------------------TGACATA...............................................................................	28	20	0.05	1	1	0	0	0	0	0
.................................................................TGCAC-----------AAAATGAGTAG-ACTTC.........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
....TTAGATG-----------------------TTAGT-----------------GTGCGGTGTC.........................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0
.............................................................................................ACTTCA-----------ATAAT--------------------------CCCGTGGCGACGAC................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
....................................................................................................................................................................TTATTATCAAAAATCAACTAAA----GTACAG-----------------------------------------------------------------......................................................................................	28	20	0.05	1	1	0	0	0	0	0
.TTGTTAGATG-----------------------TTAGT-----------------GTGCGG.............................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.....................................................................................TGAGTAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGA....................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................AG-----------------------------------------------------------------TGACATAAATTCTTATATCCAAAGC.............................................................	27	20	0.05	1	1	0	0	0	0	0
.........TG-----------------------TTAGT-----------------GTGCGGTGTTGCA......................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0
.TTGTTAGATG-----------------------TTAGT-----------------GTGCGGT............................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................CCGTGGCGACGACCGACG...........................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................CAACTAAA----GTACAG-----------------------------------------------------------------TGACA.................................................................................	19	20	0.05	1	1	0	0	0	0	0
................................................................TTGCAC-----------AAAATGAGTAG-ACTTCA-----------ATAAG--------------------------..............................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
GTTGTTAGATG-----------------------TTAGT-----------------GTGCGGTT...........................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................AAATCAACTAAA----GTACAG-----------------------------------------------------------------TGACATAAATC...........................................................................	29	20	0.05	1	1	0	0	0	0	0
..................................................................GCAC-----------AAAATGAGTAG-ACTTCA-----------AT...........................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................AAATCAACTAAA----GTACAG-----------------------------------------------------------------TGACATAAAC............................................................................	28	20	0.05	1	0	0	0	0	1	0
..........................................................................................................................................................................TCAAAAATCAACTAAA----GTACAG-----------------------------------------------------------------TGACAA................................................................................	28	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................TCAACTAAA----GTACAG-----------------------------------------------------------------TGACATAAATTCT.........................................................................	28	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................AAATCAACTAAA----GTACAG-----------------------------------------------------------------TGACA.................................................................................	23	20	0.05	1	0	0	0	0	1	0
.................................................................................................CA-----------ATAAT--------------------------CCCGTGGCGACGAC................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..............................................................................................CTTCA-----------ATAAT--------------------------CCCGTGGCGACG..................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................TAAA----GTACAG-----------------------------------------------------------------TGACATAAATTCT.........................................................................	23	20	0.05	1	1	0	0	0	0	0
..................................................................................................................T--------------------------CCCGTGGCGACGACCGACGT..........................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
.....................................................................................TGAGTAG-ACTTCA-----------ATAAT--------------------------CCCGTGGCGT....................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................................AATCAACTAAA----GTACAG-----------------------------------------------------------------TGACATAAATTC..........................................................................	29	20	0.05	1	1	0	0	0	0	0

dse_97

scaffold_973:732-798 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-17.5	-17.3	-17.2