dse_941

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GACGCGATGCGGCTTCCAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGCGTTGGTGTGCGAGCGCGAGAGAGCGCAGTTGCATGTGTGCGTGTGTGTGAGCCGGCAGGAAAATAAGAAAACAAGAAAGGCAAAAAGAGAAGGGAGAAGCATTGTACGAAATAAAATAAACAAAAAACAAGACAATTTCAACAACGATTGCTATGAGCCTGCACTTTCCATTAATTCCATTAATTATTAAAAA ************************************************((((.((((((....(((....)))....)))))).))))...((((((.((((.....((......................................)).....))))))))))...................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	V115 head	M054 female body	V114 embryo
..CGCGATGCGGCTTCCAATCAGTTGAT...............................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	1	0
.............................................................GGTGTGCGAGCGCGAGAGAGCGCAGT....................................................................................................................................................................	26	0	1	1.00	1	1	0	0	0
..............................................................GTGTGCGAGCGCGAGAGAGCG........................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
.......................................ACTCCCAAACGGTGAGTGCGTTGGTGTG........................................................................................................................................................................................	28	0	1	1.00	1	0	1	0	0
...........................................................TTGGTGTGCGAGCGCGAGAGA...........................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0
...GCGATGCGGCTTCCAATCAGTTGATT..............................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1
......ATGCGGCTTCCAATCAGTTGATTGA............................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	0	1
........................................................................................................................ATAAGAAAAGGAGAAAGGCAAAAA...........................................................................................................	24	2	1	1.00	1	1	0	0	0
.............................GACTACAAAAACTCCCAAACGGTTT.....................................................................................................................................................................................................	25	2	1	1.00	1	0	0	1	0
....................................................................................AGTTGCATGTGTGCGTGTG....................................................................................................................................................	19	0	1	1.00	1	0	1	0	0
.....................................................................................................................................AAAGGCAAAAAGAGAAGC....................................................................................................	18	1	4	0.25	1	0	1	0	0
.......................................................................................................................................AGGCTAAGAGAGAAGGGA..................................................................................................	18	2	6	0.17	1	0	1	0	0
.......................................................................................................................................AGGCAGAAGGAGAAGGGAG.................................................................................................	19	2	6	0.17	1	0	1	0	0
...........................................................................................................................................AAAAAGAGAAGGGAAAAG..............................................................................................	18	1	6	0.17	1	0	1	0	0
.........................................................................................................................TAAGAAAACAAGGAAGGAAGAA............................................................................................................	22	3	8	0.13	1	0	1	0	0
........................................................................................................................................GGCAAAAAGAGAAGCAAGA................................................................................................	19	2	9	0.11	1	0	0	1	0

CTGCGCTACGCCGAAGGTTAGTCAACTAACTGATGTTTTTGAGGGTTTGCCACTCACGCAACCACACGCTCGCGCTCTCTCGCGTCAACGTACACACGCACACACACTCGGCCGTCCTTTTATTCTTTTGTTCTTTCCGTTTTTCTCTTCCCTCTTCGTAACATGCTTTATTTTATTTGTTTTTTGTTCTGTTAAAGTTGTTGCTAACGATACTCGGACGTGAAAGGTAATTAAGGTAATTAATAATTTTT ************************************************((((.((((((....(((....)))....)))))).))))...((((((.((((.....((......................................)).....))))))))))...................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V115 head
.........................................................GCAACCACACGCTCGTAGTC..............................................................................................................................................................................	20	3	4	0.25	1	1
............................................................................................................................................................................................................TGGCGATGCTCGGACGTG.............................	18	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droSec2	scaffold_19:780064-780314 +	dse_941	GACGCGATGCGGCTTCCAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGC------GTTGGTGT-G--C--------GAGCGCGAG-AG----------AG---------------------------------C------GCAGTTGC------ATG--TGTGCG------------TGTGTGTGAGCCGGCAGGAAAATAAGAAAACAAG--------------------------AAA------GGCAAA------------------------------------AAGAGAAGGG-A--G---AAGCATTGTACGAAATAAAATAAACAAAAAACAA-----------GACA-ATTTCAACA---ACGATTGC--------TAT---GAGCCTGCACTTTCCATTAATTCCATTAATTATT---AA-AAA
droSim2	3l:18435011-18435262 +	dsi_9739	GACGCGATGCGGCTTCCAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGC------GTTGGTGT-G--C--------GAGCGCGAG-AG----------AG---------------------------------C------GCAGCTGC------ATGTGTGTGTG------------CGTGTGTGTGCCGGCAGGAAAATAAGAAAACAAG--------------------------AAA------GGCAAA------------------------------------AAGAGAAGGG-A--G---AAGCATTGTACGAAATAAAATAAACAA-AAACAA-----------GACA-ATTTCAGCA---ACGATTGC--------TAT---GAGCCTGCACTTTCCATTAATTCCATTAATTATA---AA-AAA
dm3	chr3L:18815893-18816151 +		GACGCGATGCGGCTTCCAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGT------GTTGGTGT-G--C--------GAGCGCGAG-AG----------AG---------------------------------C------GCAACTGC------ATG--TGTGTG------------CGTGTGTGTGCCGGCAGGAAAATAAGAAAACAAG--------------------------AAA------GGCA--A-------------------AAAAGACAA------AAAGAGAAGGG-A--G---AAGCATTGTACGAAATGAAATAAACAAAAAACAA-----------GACA-ATTTCAGTA---ACGATTGC--------TAT---GAGCCTGTACTTTCCATTAATTCCATTAATTATT---AA--AA
droEre2	scaffold_4784:15116295-15116551 -	der_822	GACGCGATGCGGCTTCAAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGT------GTTGGAGT-G--C--------GAGCGCGCG-AG----------AG---------------------------------C--GAGG---GCTGCGTGTGTATG--TGTGCA------------TGTGTGTGTGCCGGCAGGAAAGTAAAAAA------------------------------CA--AAAACA------AAAAAACGAACAAAAGAGG-----------------AAGAGAAGGGAA--A---AAACATTGTTCGAA------CAAAACAAAAACAA-----------GGCA-ATTTCAGCA---ACGATTGC--------TAT---GAGCCTGTACTTTTCAT---------TAATCATT---AA-AAA
droYak3	3L:15255170-15255455 -		GACGCGATGCGGCTTCAAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGT------GCTGGTGT-G--TGTGTGTGTGAGCGCGCG-AG----------AG---------------------------------C--GGTT---GCTGCGTGCGTGTGTGTGTGTG------------CGTGTGAGTGCCGGCAGGAAAATAAGAAAACAAGAAAACCGAAAAATAA--------------------GACA--A-------------------AAAAGGAAAAAAGAGAAAGAGAAGGG-A--G---AAGCATTGTTCGAAATAAAATAAACAAAAAACAA-----------GACA-ATTGCTGCA---ACGATTGC--------TAT---GAGCCTGTACTTTCCAT---------TAATTATT---AA-TAA
droEug1	scf7180000409471:675314-675552 -		CACGCGATGCGGCATCAAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGT------GTTGGTGT-A--C--------GGTCGCGAG-AGAGTGAGAGG------------------------------------------T---GGTGCGTGCGTG----TGTGTG------------TCTGTGTGTACCGGCAGGGAAGAA----A------------------------------------------ATAA------------------------------------AAGAGAAGGG-A--GACGAAACATTGTTCAAAATAAAATAAACAAAAAACAA-----------GACA-ATTACAGCA---ACGAATGC--------TAT---GAGTCTGTACTTTTCAT---------TAACAATT---AA-AAA
droBia1	scf7180000302529:688988-689200 -		AGCGCGATGCGGCTTCCAATCAGCTAATCGACTACAAGAACTCGCAGACGGTGAGTG--------TTGGTGT-G--C--------GGCAGCGG------------------------------------------------------------------------G--CGCGCG------------TGTGTGCGTGCCGGCAGGAAAAAG--A--------------------------------------------CGCA------------------------------------AAGAGAAGGG-A--G---AAACGTTGTTCAAAGTAAAATAAACAAAAAACAA-----AAACAAGGCA-AATTGAGCA---ACGGCTGC--------T-----GAGCCTGTACTTTC-AG---------AAACAATT---AA-GAG
droTak1	scf7180000415184:240329-240548 -		AACGCGATGCGGCTTCGAATCAGTTAATTGACTACAAAAACTCGCAGACGGTGAGTGT------GTTGGTGT-G--C--------GAGAGCGAG-CG----------AG---------------------------------C----------------------------GTA------------TGTGTGTGTGCCGGCAGGAAAATAAGAAA-------------------------------A--AACACA------------------------------------------AAGAGAAGGG-A--G---AAACATTGTTCAAAATAAAATAAACAAAAAACAA-----------GACA-ATCAAGGCA---ACGATTGC--------TAT---GAGCCTGTACTTTTCGT---------TAATAATT---AA--AA
droEle1	scf7180000490993:1727249-1727477 +		AACGCGATGCGGCATCGAATCAGTTGATTGACTACAAAAACTGCCAAACGGTGAGTGC------GTTGGTGT-G--C--------GAGAGCGAG-A--------------------------------------------------------GGTGCGCGTATA----TGTGTG------------TTTGTGTCTGCCGGCAGGAAAATAAGA------------------------------------------GGAAAA------------------------------------AAGAGAAGGG-A--G---AAACATTGTTGAAAATAAAACAAACAAAAAACAA-----------GGCA-ATTAAAGCA---ACGAATGC--------TAT---GAGTCTGTACTTTTCAT---------TAATAATT---AA-AAA
droRho1	scf7180000779212:31489-31701 -		AACGCGATGCTGCATCGAATCAGTTGATTGACTACAAAAATTCTCAAACGGTGAGTGT------GTTGGTGT-G--C--------GAGAGCGAG-A--------------------------------------------------------GCTGC------------GCGTA------------TGTGCGTGTGCCGGCAGGAAAATAAGA------------------------------------------GGCA-A------------------------------------AAGAGAAAGG--------AAACATTGTCGAAAATAAAACAAACAA-AAACAA-----------GGCG-ATTAAAGCA---ACGATTGC--------TAT---GAGTCTGTACTTTTCAT---------AAATAATT---A-----
droFic1	scf7180000453824:172055-172279 +		AACGCGATGCGGCTTCAAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGCATAGGTATTGGTGT-G--C---------AGCGCGAG-AG----------TG---------------------------------C------GA------------A----TGTGCG------------TGTGTGTGTGCCGGCAGGAAAACAG----------------------------------------------AAAA------------------------------------AAGAGAAGGG-A--G---AAACATTGTTGAAAATAAAATAAACAAAAAACAA-----------GACA-ATTAAAGCG---GCGATTGC--------TAT---GAGTTTGTACTTTTTAT---------TAATGTTT---AA-AAA
droKik1	scf7180000302248:157265-157521 -		ACCGCGATGCCGCATCGAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGT------GTTGGTGT-G--T--------CTGTGTGCG-A---------------------------------------------GCAA-------G---A------ATCTGTGTGTG------------TGTGTGAGTGCCGGCCCGAAATTAGGGAA---------------------------------------------AA--AGAGAAAGGAA----GAAGAG---------GAGG----GCAGC-AGAAACAAAGCGTTGTTAAAAATAAAATAAACAAAAAACAA-----------GACA-ATAAAGGCGGGGGCGATTGC--------TAT---AATGCTGTACTTTTC-T--ATATCGTTAATAATT---AAAAAA
droAna3	scaffold_13337:18619895-18620125 -	dan_2715	CACGCGACGCCGCATCGAACCAGTTGATTGACTACAAAAACTCCCAAACGGTAAGTGG------GT--GTGT-G--C--------GAGAGAG---------------AG---------------------------------G------CCAGACAC------AGGTGTATGTG------------TGTGTGTGAGCCGGCCTCTGAATGAGAAG--------------------------------------------------------AGAAAGGTGGT------------------GGGGGGG-A--G---AATCATTGTTCAAAATGAAATAAACAAAAAACAA-----------GACA-CTTAACACA---ACGAATGC--------TGA---GAGTCAGTACGTTAT-T---------TGATCATT---AA-AAA
droBip1	scf7180000396741:1807496-1807730 -		CACGCGACGCCGCATCGAACCAGTTGATTGACTACAAAAACTCCCAAACGGTAAGTGG------GT----GT-G------------GGTGAGAG-CC----------AG---------------------------------C------ACAGGTAT------ATG------TG------------TGTTTGTTCGCCGGTAGGTGAATGAGAGG-----------------------------AGA--AAGTCT------G--AGGGGGTGG--------T----------------GCTGGCGGC-A--G---AATCATTGTTCAAAATGAAATAAACAAAAAACAA-----------GACA-ATTAACACG---ACGAATGC--------TGA---GAGTCAGTAGATT--AT---------TAATCATT---AA-AAA
dp5	XR_group6:4142945-4143263 -	dps_3031	CACGCGATGCTGCTTCGAATCAATTGATCGACTACAAGAACACCCAAACGGTGAGTGG------GA----GT-T--C--------GATTGGGAGGGGAGTGAGAGGGAGCCGTATGATTGCATTTTTT--TTTGTGTGTGTGCAA-------GTTGT------TTGTGTGTGCG------------TGTGCAAGTGCCGGGCCC---------------------CGAAAAATGGAAGGAAAGGAGA--AAAACA------A--AGAGAAAGGAAAGGCAAAGCG---------GAGT--------GCAAAAAT-AATTATTATTCAAAGC---TCAAACAAAAAACAACACAAAAACAAGACA-ATTAAATCA---ATGAATGCGC------TACGTGGAGCCTGTACTTTTT-C---------AAA-TGTTACCA--AAT
droPer2	scaffold_9:2433134-2433443 -		CACGCGATGCTGCTTCGAATCAATTGATCGACTACAAGAACACCCAAACGGTGAGTGG------GA----GT-T--C--------GATTGGGAGGGGAGTGAGAGGGAGCCGTATGATTGCATTTTTTTTTTTTTGTGTGTGCAA-------GTTGT------TTGTGTGTGTG------------TGTGCAAGTGCCGGGCCC---------------------CGAAAAATGGAAGGAAAGGAGA--AAAACA------A--AGAGAAAGGAAAGGCAAAGCG---------GAGT--------GCAAAAAT-AATTATTATTCAAAGC---TCAAACAAAAAACAA-----------CACA-ATTAAATCA---ATGAATGCGC------TACGTGGAGCCTGTACTTTTT-C---------AAA-TGTTACCA--AAT
droWil2	scf2_1100000004762:1680321-1680557 +		CACGAGATGCCGCATCCAATCAATTAATTGACTACAAAAATTCCCAAACGGTAAGTGT------GC----GTAATGG--------TTGCGTAGG-G---------------------------------------------ACGAGGTT---GTTGTGGGAGGGGTCATGGGCAAAAGCAAGGGGCAAAGAGCATGCCGGGCCC---------------------CGAAAAAAAGCAAAACAACAAC--AAGTAA------C--AAAAAAGAGAAAGGCAAAAAG---------GAAAAAAAAAGAG-A--G-------------------------------AAACAA-----------ATTATATTTCAGAT---ACAGA-----GTTTGCTTT---G------------------------------------------
droVir3	scaffold_13049:18119987-18120044 -		CACGCGATGCCGCTTCGAATCAACTGCTTGATTACAAGAACTCGCAAAAGGTGAGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6680:23693088-23693141 -		CACGCGATGCTGCTTCAAATCAATTGATTGATTATAAGAACTGCCAAAAGGTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15110:24173964-24174019 -		CGCGCGATGCCGCTTCAAACCAATTGCTTGATTATAAAAACTCTCAAAAGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

GACGCGATGCGGCTTCCAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGC------GTTGGTGT-G--C--------GAGCGCGAG-AG----------AG---------------------------------C------GCAGTTGC------ATG--TGTGCG------------TGTGTGTGAGCCGGCAGGAAAATAAGAAAACAAG--------------------------AAA------GGCAAA------------------------------------AAGAGAAGGG-A--G---AAGCATTGTACGAAATAAAATAAACAAAAAACAA-----------GACA-ATTTCAACA---ACGATTGC--------TAT---GAGCCTGCACTTTCCATTAATTCCATTAATTATT---AA-AAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..CGCGATGCGGCTTCCAATCAGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0
...................................................................GGTGT-G--C--------GAGCGCGAG-AG----------AG---------------------------------C------GCAGT................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0
....................................................................GTGT-G--C--------GAGCGCGAG-AG----------AG---------------------------------C------G....................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.......................................ACTCCCAAACGGTGAGTGC------GTTGGTGT-G--..............................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1
.................................................................TTGGTGT-G--C--------GAGCGCGAG-AG----------A..............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
...GCGATGCGGCTTCCAATCAGTTGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
......ATGCGGCTTCCAATCAGTTGATTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.............................GACTACAAAAACTCCCAAACGGTTT....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
.......................................................................................................................................................AGTTGC------ATG--TGTGCG------------TGTG............................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................................................AAA------GGCAAA------------------------------------AAGAGAAGC........................................................................................................................................	18	4	0.25	1	0	0	0	1

droSim2

GACGCGATGCGGCTTCCAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGC------GTTGGTGT-G--C--------GAGCGCGAG-AG----------AG---------------------------------C------GCAGCTGC------ATGTGTGTGTG------------CGTGTGTGTGCCGGCAGGAAAATAAGAAAACAAG--------------------------AAA------GGCAAA------------------------------------AAGAGAAGGG-A--G---AAGCATTGTACGAAATAAAATAAACAA-AAACAA-----------GACA-ATTTCAGCA---ACGATTGC--------TAT---GAGCCTGCACTTTCCATTAATTCCATTAATTATA---AA-AAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................A---ACGATTGC--------TAT---GAGCCTGCACTTTCC............................	27	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGATTGACTACAAAAACTCCC.............................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..CGCGATGCGGCTTCCAATCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................ACGGTGAGTGC------GTTGGTGT-G--C--------.....................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................A-ATTTCAGCA---ACGATTGC--------T................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................TTGACTACAAAAACTCCCAAACGGT......................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....CGATGCGGCTTCCAATCAGTTGATTG............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................TGACTACAAAAACTCCCAAACGGTT.....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......ATGCGGCTTCCAATCAGTTGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TGTGTGTG------------CGTGTGTGTG......................................................................................................................................................................................................................................................	18	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
...................................AAAAACTCCCAAACGGTTT....................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

dm3

GACGCGATGCGGCTTCCAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGT------GTTGGTGT-G--C--------GAGCGCGAG-AG----------AG---------------------------------C------GCAACTGC------ATG--TGTGTG------------CGTGTGTGTGCCGGCAGGAAAATAAGAAAACAAG--------------------------AAA------GGCA--A-------------------AAAAGACAA------AAAGAGAAGGG-A--G---AAGCATTGTACGAAATGAAATAAACAAAAAACAA-----------GACA-ATTTCAGTA---ACGATTGC--------TAT---GAGCCTGTACTTTCCATTAATTCCATTAATTATT---AA--AA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................TCCCAAACGGTGAGTGT------G.........................................................................................................................................................................................................................................................................................................................................................................................	18	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................ACAAAAACTCCCAAACGGTGAGTGT------GT........................................................................................................................................................................................................................................................................................................................................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................ACTCCCAAACGGTGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................GCATTGTACGAAATGAAATAAAC......................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................AGTGT------GTTGGTGT-G--C--------GAG..................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................GACAA------AAAGAGAAGGG-A--G---...............................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................CTGC------ATG--TGTGTG------------CGTGTGT.........................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TG--TGTGTG------------CGTGTGTGTGC.....................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGC------ATG--TGTGTG------------CGTGTGTGTG......................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TG--TGTGTG------------CGTGTGTGTG......................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGC------ATG--TGTGTG------------CGTGTGTGT.......................................................................................................................................................................................................................................................	21	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................C------ATG--TGTGTG------------CGTGTGTG........................................................................................................................................................................................................................................................	18	18	0.11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GC------ATG--TGTGTG------------CGTGTG..........................................................................................................................................................................................................................................................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GC------ATG--TGTGTG------------CGTGTGTGTG......................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0

droEre2

GACGCGATGCGGCTTCAAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGT------GTTGGAGT-G--C--------GAGCGCGCG-AG----------AG---------------------------------C--GAGG---GCTGCGTGTGTATG--TGTGCA------------TGTGTGTGTGCCGGCAGGAAAGTAAAAAA------------------------------CA--AAAACA------AAAAAACGAACAAAAGAGG-----------------AAGAGAAGGGAA--A---AAACATTGTTCGAA------CAAAACAAAAACAA-----------GGCA-ATTTCAGCA---ACGATTGC--------TAT---GAGCCTGTACTTTTCAT---------TAATCATT---AA-AAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................................................................CAAAAGAGG-----------------AAGAGAAGGGA......................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...GCGATGCGGCTTCAAATCAGTTGATT.............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0
......................................................GTGT------GTTGGAGT-G--C--------GAGCGC...............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................GAGAAGGGAA--A---AAACATT........................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0

droYak3

GACGCGATGCGGCTTCAAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGT------GCTGGTGT-G--TGTGTGTGTGAGCGCGCG-AG----------AG---------------------------------C--GGTT---GCTGCGTGCGTGTGTGTGTGTG------------CGTGTGAGTGCCGGCAGGAAAATAAGAAAACAAGAAAACCGAAAAATAA--------------------GACA--A-------------------AAAAGGAAAAAAGAGAAAGAGAAGGG-A--G---AAGCATTGTTCGAAATAAAATAAACAAAAAACAA-----------GACA-ATTGCTGCA---ACGATTGC--------TAT---GAGCCTGTACTTTCCAT---------TAATTATT---AA-TAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................CCCAAACGGTGAGTGT------GCTGGT....................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....GATGCGGCTTCAAATCAGTTGAT..............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................GACTACAAAAACTCCCAAACGGT......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................CAGTTGATTGACTACAAAAACTCCC.............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................GGTGT-G--TGTGTGTGTGAGCGCGC.............................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................GTG------------CGTGTGAGTGCCGGCAGGA.............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CACGCGATGCGGCATCAAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGT------GTTGGTGT-A--C--------GGTCGCGAG-AGAGTGAGAGG------------------------------------------T---GGTGCGTGCGTG----TGTGTG------------TCTGTGTGTACCGGCAGGGAAGAA----A------------------------------------------ATAA------------------------------------AAGAGAAGGG-A--GACGAAACATTGTTCAAAATAAAATAAACAAAAAACAA-----------GACA-ATTACAGCA---ACGAATGC--------TAT---GAGTCTGTACTTTTCAT---------TAACAATT---AA-AAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCGCGATGCGGCTTCCAATCAGCTAATCGACTACAAGAACTCGCAGACGGTGAGTG--------TTGGTGT-G--C--------GGCAGCGG------------------------------------------------------------------------G--CGCGCG------------TGTGTGCGTGCCGGCAGGAAAAAG--A--------------------------------------------CGCA------------------------------------AAGAGAAGGG-A--G---AAACGTTGTTCAAAGTAAAATAAACAAAAAACAA-----AAACAAGGCA-AATTGAGCA---ACGGCTGC--------T-----GAGCCTGTACTTTC-AG---------AAACAATT---AA-GAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AACGCGATGCGGCTTCGAATCAGTTAATTGACTACAAAAACTCGCAGACGGTGAGTGT------GTTGGTGT-G--C--------GAGAGCGAG-CG----------AG---------------------------------C----------------------------GTA------------TGTGTGTGTGCCGGCAGGAAAATAAGAAA-------------------------------A--AACACA------------------------------------------AAGAGAAGGG-A--G---AAACATTGTTCAAAATAAAATAAACAAAAAACAA-----------GACA-ATCAAGGCA---ACGATTGC--------TAT---GAGCCTGTACTTTTCGT---------TAATAATT---AA--AA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AACGCGATGCGGCATCGAATCAGTTGATTGACTACAAAAACTGCCAAACGGTGAGTGC------GTTGGTGT-G--C--------GAGAGCGAG-A--------------------------------------------------------GGTGCGCGTATA----TGTGTG------------TTTGTGTCTGCCGGCAGGAAAATAAGA------------------------------------------GGAAAA------------------------------------AAGAGAAGGG-A--G---AAACATTGTTGAAAATAAAACAAACAAAAAACAA-----------GGCA-ATTAAAGCA---ACGAATGC--------TAT---GAGTCTGTACTTTTCAT---------TAATAATT---AA-AAA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AACGCGATGCTGCATCGAATCAGTTGATTGACTACAAAAATTCTCAAACGGTGAGTGT------GTTGGTGT-G--C--------GAGAGCGAG-A--------------------------------------------------------GCTGC------------GCGTA------------TGTGCGTGTGCCGGCAGGAAAATAAGA------------------------------------------GGCA-A------------------------------------AAGAGAAAGG--------AAACATTGTCGAAAATAAAACAAACAA-AAACAA-----------GGCG-ATTAAAGCA---ACGATTGC--------TAT---GAGTCTGTACTTTTCAT---------AAATAATT---A-----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AACGCGATGCGGCTTCAAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGCATAGGTATTGGTGT-G--C---------AGCGCGAG-AG----------TG---------------------------------C------GA------------A----TGTGCG------------TGTGTGTGTGCCGGCAGGAAAACAG----------------------------------------------AAAA------------------------------------AAGAGAAGGG-A--G---AAACATTGTTGAAAATAAAATAAACAAAAAACAA-----------GACA-ATTAAAGCG---GCGATTGC--------TAT---GAGTTTGTACTTTTTAT---------TAATGTTT---AA-AAA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACCGCGATGCCGCATCGAATCAGTTGATTGACTACAAAAACTCCCAAACGGTGAGTGT------GTTGGTGT-G--T--------CTGTGTGCG-A---------------------------------------------GCAA-------G---A------ATCTGTGTGTG------------TGTGTGAGTGCCGGCCCGAAATTAGGGAA---------------------------------------------AA--AGAGAAAGGAA----GAAGAG---------GAGG----GCAGC-AGAAACAAAGCGTTGTTAAAAATAAAATAAACAAAAAACAA-----------GACA-ATAAAGGCGGGGGCGATTGC--------TAT---AATGCTGTACTTTTC-T--ATATCGTTAATAATT---AAAAAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CACGCGACGCCGCATCGAACCAGTTGATTGACTACAAAAACTCCCAAACGGTAAGTGG------GT--GTGT-G--C--------GAGAGAG---------------AG---------------------------------G------CCAGACAC------AGGTGTATGTG------------TGTGTGTGAGCCGGCCTCTGAATGAGAAG--------------------------------------------------------AGAAAGGTGGT------------------GGGGGGG-A--G---AATCATTGTTCAAAATGAAATAAACAAAAAACAA-----------GACA-CTTAACACA---ACGAATGC--------TGA---GAGTCAGTACGTTAT-T---------TGATCATT---AA-AAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................TTGACTACAAAAACTCCCAAAC.........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.............................GACTACAAAAACTCCCAAACGGT......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...GCGACGCCGCATCGAACCAGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
CACGCGACGCCGCATCGAACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................C------AGGTGTATGTG------------TGTGTGTGAGCCG...................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................GACA-CTTAACACA---ACGAATGC--------TGA---GAGT.......................................	28	1	1.00	1	0	0	0	0	1	0
.....................AGTTGATTGACTACAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.........................GATTGACTACAAAAACTCCC.............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........GCCGCATCGAACCAGTTGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	1	0

droBip1

CACGCGACGCCGCATCGAACCAGTTGATTGACTACAAAAACTCCCAAACGGTAAGTGG------GT----GT-G------------GGTGAGAG-CC----------AG---------------------------------C------ACAGGTAT------ATG------TG------------TGTTTGTTCGCCGGTAGGTGAATGAGAGG-----------------------------AGA--AAGTCT------G--AGGGGGTGG--------T----------------GCTGGCGGC-A--G---AATCATTGTTCAAAATGAAATAAACAAAAAACAA-----------GACA-ATTAACACG---ACGAATGC--------TGA---GAGTCAGTAGATT--AT---------TAATCATT---AA-AAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

CACGCGATGCTGCTTCGAATCAATTGATCGACTACAAGAACACCCAAACGGTGAGTGG------GA----GT-T--C--------GATTGGGAGGGGAGTGAGAGGGAGCCGTATGATTGCATTTTTT--TTTGTGTGTGTGCAA-------GTTGT------TTGTGTGTGCG------------TGTGCAAGTGCCGGGCCC---------------------CGAAAAATGGAAGGAAAGGAGA--AAAACA------A--AGAGAAAGGAAAGGCAAAGCG---------GAGT--------GCAAAAAT-AATTATTATTCAAAGC---TCAAACAAAAAACAACACAAAAACAAGACA-ATTAAATCA---ATGAATGCGC------TACGTGGAGCCTGTACTTTTT-C---------AAA-TGTTACCA--AAT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................GACTACAAGAACACCCAAACGGT......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................CGACTACAAGAACACCCAAACGGTGT....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................GTGAGTGG------GA----GT-T--C--------GATTG................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................GAGTGG------GA----GT-T--C--------GATTGGGAGGG..........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................GAGAAAGGAAAGGCAAAGCG---------GAGT--------GC......................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................ATCAATTGATCGACTACAAGAACAC...............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................GAAGGAAAGGAGA--AAAACA------A--..................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................TTGGGAGGGGAGTGAGAGGG...............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...................TCAATTGATCGACTACAAGAA..................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................GATCGACTACAAGAACACCC.............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
........................TGATCGACTACAAGAACACCCAAACGG.......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0
...............................CTACAAGAACACCCAAACGGTGT....................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................CTACAAGAACACCCAAACGGT......................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................CAATTGATCGACTACAAG....................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................TGT------TTGTGTGTGCG------------TGTGC...........................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	1	0	0	0

droPer2

CACGCGATGCTGCTTCGAATCAATTGATCGACTACAAGAACACCCAAACGGTGAGTGG------GA----GT-T--C--------GATTGGGAGGGGAGTGAGAGGGAGCCGTATGATTGCATTTTTTTTTTTTTGTGTGTGCAA-------GTTGT------TTGTGTGTGTG------------TGTGCAAGTGCCGGGCCC---------------------CGAAAAATGGAAGGAAAGGAGA--AAAACA------A--AGAGAAAGGAAAGGCAAAGCG---------GAGT--------GCAAAAAT-AATTATTATTCAAAGC---TCAAACAAAAAACAA-----------CACA-ATTAAATCA---ATGAATGCGC------TACGTGGAGCCTGTACTTTTT-C---------AAA-TGTTACCA--AAT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................ATCAATTGATCGACTACAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................TAAATCA---ATGAATGCGC------TACGTGGAG........................................	26	1	2.00	2	0	0	0	0	0	2
.ACGCGATGCTGCTTCGAATCA....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
.....GATGCTGCTTCGAATCAATTGATCGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	2	0	0	0	0	0
.............................GACTACAAGAACACCCAAACGGT......................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.....................AATTGATCGACTACAAGAACACCC.............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................A---ATGAATGCGC------TACGTGGAGCCTGTACC................................	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................TTGGGAGGGGAGTGAGAGGGA..............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................TTGATCGACTACAAGAACACCCA............................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............CTTCGAATCAATTGATCG............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................................................................GA----GT-T--C--------GATTGGGAGGGGAGT......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................A---ATGAATGCGC------TACGTGGAG........................................	20	1	1.00	1	0	0	0	0	0	1
.........................GATCGACTACAAGAACACC..............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droWil2

CACGAGATGCCGCATCCAATCAATTAATTGACTACAAAAATTCCCAAACGGTAAGTGT------GC----GTAATGG--------TTGCGTAGG-G---------------------------------------------ACGAGGTT---GTTGTGGGAGGGGTCATGGGCAAAAGCAAGGGGCAAAGAGCATGCCGGGCCC---------------------CGAAAAAAAGCAAAACAACAAC--AAGTAA------C--AAAAAAGAGAAAGGCAAAAAG---------GAAAAAAAAAGAG-A--G-------------------------------AAACAA-----------ATTATATTTCAGAT---ACAGA-----GTTTGCTTT---G------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................G---------------------------------------------ACGAGGTT---GTTGTGGGAGGGGTC...................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
........................TAATTGACTACAAAAATTC...............................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0
.....................AATTAATTGACTACAAAAATTCCC.............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
CACGAGATGCCGCATCCAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................AAAGCAAAACAACAAC--AAGTA............................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................AGGGGCAAAGAGCATGCCGGGCCC---------------------.........................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................GAAAAAAAAAGAG-A--G-------------------------------AAACAA-----------..................................................................................	21	2	0.50	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................AAAG---------GAAAAAAAAAGAG-A--...................................................................................................................................	18	2	0.50	1	0	1	0	0	0

droVir3

CACGCGATGCCGCTTCGAATCAACTGCTTGATTACAAGAACTCGCAAAAGGTGAGTAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................ATCAACTGCTTGATTACAAGAACTCGC.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAACTGCTTGATTACAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ACGCGATGCCGCTTCGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGCTTCGAATCAACTGCTTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................ATCAACTGCTTGATTACAAGAACT................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAACTGCTTGATTACAAGAACTCGC.............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...GCGATGCCGCTTCGAATCAACTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ATTACAAGAACTCGCAAAAGGAAT....................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ATTACAAGAACTCGCAAAAGGA......................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CTTCGAATCAACTGCTTGATTA........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................AACTGCTTGATTACAAGAAC.................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........GCCGCTTCGAATCAACTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................CAACTGCTTGATTACAAGAACT................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CGAATCAACTGCTTGATTACAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GCTTCGAATCAACTGCTTGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GATTACAAGAACTCGCAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......TGCCGCTTCGAATCAACTGCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CACGCGATGCCGCTTCGAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TACAAGAACTCGCAAAAGG.......................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................ATCAACTGCTTGATTACAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................GATTACAAGAACTCGCAAAAGGAAT....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TTACAAGAACTCGCAAA..........................................................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................TTGATTACAAGAACTCGCAAAA.........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CACGCGATGCTGCTTCAAATCAATTGATTGATTATAAGAACTGCCAAAAGGTAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........GCTTCAAATCAATTGATTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................GATTGATTATAAGAACTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................ATCAATTGATTGATTATAAGAACTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..................ATCAATTGATTGATTATAAGAACTGC..............................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............TCAAATCAATTGATTGATTATAAGAACTG...............................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0
....................CAATTGATTGATTATAAGAACTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
.....................AATTGATTGATTATAAGAACTGCC.............................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droGri2

CGCGCGATGCCGCTTCAAACCAATTGCTTGATTATAAAAACTCTCAAAAGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................AAACCAATTGCTTGATTATA......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0

dse_941

scaffold_19:780114-780264 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-22.45	-22.45	-22.15