ID:

dse_913

 Coordinate:

scaffold_17:1018699-1018849 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.5

Flybase annnotation

CDS [Dsec\GM13504-cds]; exon [dsec_GLEANR_14113:1]; intron [Dsec\GM13504-in]

No Repeatable elements found

mature
  1. scaffold_888:828-848 -
  2. scaffold_888:4324-4344 +
  3. scaffold_943:2248-2268 +
  4. scaffold_943:3044-3064 -
  5. scaffold_3192:2509-2529 +
  6. scaffold_6123:1700-1720 +
  7. scaffold_11965:779-799 -
  8. scaffold_17:835282-835302 +
  9. dse_904  scaffold_17:836112-836132 -
  10. scaffold_17:843779-843799 +
  11. dse_913  scaffold_17:1018779-1018799 +
  12. scaffold_17:1019609-1019629 -
  13. scaffold_13815:494-514 -
star
  1. scaffold_888:4289-4309 +
  2. scaffold_943:2213-2233 +
  3. scaffold_3192:2474-2494 +
  4. scaffold_6123:1665-1685 +
  5. scaffold_11965:814-834 -
  6. dse_904  scaffold_17:836147-836167 -
  7. dse_913  scaffold_17:1018744-1018764 +
  8. scaffold_13815:529-549 -

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGAATGACCAAGAGCTGCTTAAGGATACGAATCAGTTCAACTCTGGCGGTGTTTGACAATGACGGCGGTCCGGCTTCTGATGATTTGGATCCTTATTCTGTGGTTGGTTGTGGTACTAATTGCAGTAAGTAAATCTCTAGAAAATGTTCGTGGGCTGCGTACCATACGCAAGTATAACGCCAGCACAGAACACTTTGTGATTCCATATCGGCAATCAGGCGTTCATCACAGTATATTGTCACTATCCAACA
***********************************************************************************************..(((((((((((......)))))))))))..........................**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V113
male body		 V115
head
 M054
female body
..................................................................................................................................AAATCTCTAGAAAATGTTCGT.................................................................................................... 21 0 13 17.00 221 216 2 3
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGC............................... 21 0 13 7.31 95 88 7 0
...................................................................................................................................................................................................................CAATCAGGCGTTCATCACAGT................... 21 0 13 6.23 81 73 6 2
......................................................................................................................................................................................................................TCAGGCGTTCATCACAGTATA................ 21 0 13 5.23 68 65 3 0
.....................................................................................................................................................................................................................ATCAGGCGTTCATCACAGTAT................. 21 0 13 3.92 51 50 0 1
..................................................................................................................................AAATCTCTAGAAAATGTTCG..................................................................................................... 20 0 13 2.92 38 35 2 1
.................................................................................................................................TAAATCTCTAGAAAATGTTCG..................................................................................................... 21 0 13 2.69 35 34 1 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGT.................................................................................................. 23 1 13 2.38 31 31 0 0
...................................................................................................................................AATCTCTAGAAAATGTTCGTG................................................................................................... 21 0 13 2.23 29 24 3 2
.........................................................................................................................................................................................................TCCATATCGGCAATCAGGCGT............................. 21 0 13 2.23 29 27 2 0
..................................................................................................................................................................................................................GCAATCAGGCGTTCATCACAG.................... 21 0 13 1.69 22 21 1 0
.......................................................................................................................................................................................................................CAGGCGTTCATCACAGTATAT............... 21 0 13 1.62 21 21 0 0
........................................................................................................................................................................................................................AGGCGTTCATCACAGTATATT.............. 21 0 13 1.54 20 20 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTT................................................................................................... 22 1 13 1.46 19 19 0 0
...........................................................................................................................................................................................................CATATCGGCAATCAGGCGTTC........................... 21 0 13 1.15 15 15 0 0
...............................................................................................TTCTGTGGTTGGTTGTGGTAC....................................................................................................................................... 21 0 8 1.13 9 8 1 0
...............................................................................................................................AGTAAATCTCTAGAAAATGTT....................................................................................................... 21 0 13 1.08 14 14 0 0
...................................................................................................................................AATCTCTAGAAAATGTTCGTGT.................................................................................................. 22 1 13 1.00 13 13 0 0
........................................................................................................................................................................................................TTCCATATCGGCAATCAGGCGT............................. 22 0 13 1.00 13 11 2 0
.............................................................................................................................................................................................................TATCGGCAATCAGGCGTTCAT......................... 21 0 13 0.92 12 12 0 0
...........................................................................................................................................................................................................................CGTTCATCACAGTATATTGTC........... 21 0 12 0.75 9 9 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGG................................ 20 0 13 0.69 9 9 0 0
................................................................................................TCTGTGGTTGGTTGTGGTACT...................................................................................................................................... 21 0 8 0.63 5 5 0 0
......................................................................................................................................................................................................................TCAGGCGTTCATCACAGTAT................. 20 0 13 0.62 8 8 0 0
....................................................................................................................................................................................................................AATCAGGCGTTCATCACAGTA.................. 21 0 13 0.54 7 5 2 0
...............................................................................................TTCTGTGGTTGGTTGTGGTACT...................................................................................................................................... 22 0 8 0.50 4 4 0 0
.............................................................................................................................................................................................................TATCGGCAATCAGGCGTTCATC........................ 22 0 13 0.46 6 5 1 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTA................................................................................................. 24 2 13 0.38 5 5 0 0
..................................................................................................................................................................................................................GCAATCAGGCGTTCATCACAGT................... 22 0 13 0.38 5 5 0 0
...............................................................................................TTCTGTGGTTGGTTGTGGTA........................................................................................................................................ 20 0 8 0.38 3 3 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTG................................................................................................... 22 0 13 0.31 4 4 0 0
.....................................................................................................................................................................................................................ATCAGGCGTTCATCACAGTATT................ 22 1 13 0.31 4 4 0 0
...................................................................................................................................AATCTCTAGAAAATGTTCGTGTA................................................................................................. 23 2 13 0.31 4 3 1 0
..............................................................................................................................................................................................................ATCGGCAATCAGGCGTTCATC........................ 21 0 13 0.31 4 4 0 0
..........................................................................................................................................................................................................CCATATCGGCAATCAGGCGTT............................ 21 0 13 0.31 4 3 1 0
..............................................................................................ATTCTGTGGTTGGTTGTGGTA........................................................................................................................................ 21 0 8 0.25 2 2 0 0
...............................................................................ATGATTTGGATCCTTATTCTGT...................................................................................................................................................... 22 0 4 0.25 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTTT.................................................................................................. 23 2 13 0.23 3 3 0 0
...........................................................................................................................................................................................................................CGTTCATCACAGTATATTGT............ 20 0 13 0.23 3 3 0 0
......................................................................................................................................CTCTAGAAAATGTTCGTGGGC................................................................................................ 21 0 13 0.23 3 3 0 0
........................................................................................................................................................................................................TTCCATATCGGCAATCAGGCG.............................. 21 0 13 0.23 3 3 0 0
.....................................................................................................................................................................................................................ATCAGGCGTTCATCACAGTA.................. 20 0 13 0.23 3 3 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCGT............................. 23 0 13 0.23 3 3 0 0
.......................................................................................................................................................................................................................CAGGCGTTCATCACAGTATA................ 20 0 13 0.23 3 2 1 0
...............................................................................................................................AGTAAATCTCTAGAAAATGTTT...................................................................................................... 22 1 13 0.23 3 3 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCT.............................. 22 1 13 0.23 3 3 0 0
...............................................................................................TTCTGTGCTTGGTTGTGGTACTA..................................................................................................................................... 23 1 6 0.17 1 1 0 0
..............................................................................................ATTCTGTGCTTGGTTGTGGTATGA..................................................................................................................................... 24 3 6 0.17 1 1 0 0
..............................................................................................ATTCTGTGCTTGGTTGTGGTATAA..................................................................................................................................... 24 3 6 0.17 1 1 0 0
..............................................................................................ATTCTGTGCTTGGTTGTGGTATTA..................................................................................................................................... 24 2 6 0.17 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTC................................................................................................. 24 2 13 0.15 2 2 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGTT.............................. 22 2 13 0.15 2 2 0 0
...................................................................................................................................................................................................................CAATCAGGCGTTCATCACAGTT.................. 22 1 13 0.15 2 2 0 0
........................................................................................................................................................................................................TTCCATATCGGCAATCAGGTA.............................. 21 2 13 0.15 2 2 0 0
......................................................................................................................................................................................................GATTCCATATCGGCAATCAGG................................ 21 0 13 0.15 2 2 0 0
.........................................................................................................................................................................................................TCCATATCGGCAATCAGGCGTTA........................... 23 1 13 0.15 2 2 0 0
.................................................................................................................................TAAATCTCTAGAAAATGTTCGTTT.................................................................................................. 24 2 13 0.15 2 2 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGC.................................................................................................... 21 1 13 0.15 2 2 0 0
.......................................................................................................................................................................................................................CAGGCGTTCATCACAGTATATT.............. 22 0 13 0.15 2 2 0 0
.........................................................................................................................................................................................................TCCATATCGGCAATCAGGCGTA............................ 22 1 13 0.15 2 2 0 0
........................................................................................................................................................................................................................AGGCGTTCATCACAGTATATTG............. 22 0 13 0.15 2 2 0 0
...............................................................................................................................................................TACCATACGCAAGTATAACG........................................................................ 20 0 13 0.15 2 2 0 0
....................................................................................................................................................................................................................AATCAGGCGTTCATCACAGT................... 20 0 13 0.15 2 2 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTA................................................................................................... 22 1 13 0.15 2 2 0 0
.......................................................................................................................TTGCAGTAAGTAAATCTCTAG............................................................................................................... 21 0 13 0.15 2 1 0 1
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAAGC............................... 21 1 13 0.15 2 2 0 0
........................................................................................................................................................................................................TTCCATATCGGCAATCAGGCGTA............................ 23 1 13 0.15 2 2 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTTA.................................................................................................. 23 2 13 0.15 2 2 0 0
...................................................................................................................................................................................................................CAATCAGGCGTTCATCACAG.................... 20 0 13 0.15 2 2 0 0
..................................................................................................................................AAATCTCTAGAAAGTGTTCGT.................................................................................................... 21 1 13 0.15 2 2 0 0
...................................................................................................................................................................................................................CAATCAGGCGTTCATCACAGTA.................. 22 0 13 0.15 2 2 0 0
...........................................................................................CTTATTCTGTGGTTGGTTGTGTA......................................................................................................................................... 23 2 7 0.14 1 1 0 0
........................................................................GCTTCTGCTGATTTGGATCCT.............................................................................................................................................................. 21 1 14 0.14 2 2 0 0
.........................................................CGTGACGGCGTTCCGGCTTC.............................................................................................................................................................................. 20 3 7 0.14 1 0 0 1
.............................................GCGGTGTTTGACAATGACGGC......................................................................................................................................................................................... 21 0 7 0.14 1 1 0 0
.........................................................................................................................................TAGAAAATGTTCGTGGTATG.............................................................................................. 20 2 7 0.14 1 1 0 0
....................................................TTGGCAATGACGGCGGTCTGG.................................................................................................................................................................................. 21 2 8 0.13 1 0 1 0
...............................................................................................TTCTGTGGTTGGTTGTGGTAT....................................................................................................................................... 21 1 8 0.13 1 1 0 0
...............................................................................................TTCTGTGGTTGGTTGTGGTT........................................................................................................................................ 20 1 8 0.13 1 1 0 0
.................................................................................................CTGTGGTTGGTTGTGGTACT...................................................................................................................................... 20 0 8 0.13 1 1 0 0
..............................ATCAGTTCAGCCCTGGCGTTG........................................................................................................................................................................................................ 21 3 9 0.11 1 0 0 1
.............................CATCAGTTCGACTCTGGC............................................................................................................................................................................................................ 18 2 10 0.10 1 0 0 1
..........................................................GTGACGGCGTTCCGGCTTCC............................................................................................................................................................................. 20 3 11 0.09 1 0 0 1
........................................................................................................................................................................................................................AGGCGTTCATCACAGTATATTGTC........... 24 0 12 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTAT.................................................................................................. 23 2 13 0.08 1 1 0 0
.......................................................................................................................................................................................................ATTCCATATGGGCAATCAGGC............................... 21 1 13 0.08 1 1 0 0
.....................................................................................................................................................................................................................ATCAGGCGTTCATCACAGCAT................. 21 1 13 0.08 1 1 0 0
.....................................................................................................................................TCTCTAGAAAATGTTCGTGTG................................................................................................. 21 1 13 0.08 1 1 0 0
......................................................................................................................................................................................................GATTCCATATCGGCAATCAGGT............................... 22 1 13 0.08 1 1 0 0
......................................................................................................................................................................................................................TCAGGCGTTCATCACAGTTTA................ 21 1 13 0.08 1 1 0 0
...............................................................................................................................................................TACCATACGCAAGTATAACGC....................................................................... 21 0 13 0.08 1 1 0 0
......................................................................................................................................................................................................................TCAGGCGTTCATCACAGTCTA................ 21 1 13 0.08 1 1 0 0
...................................................................................................................................AATCTCTAGAAAATGTTCGGGT.................................................................................................. 22 2 13 0.08 1 1 0 0
................................................................................................................................TCAAATCTCTAGAAAATGTTCGT.................................................................................................... 23 2 13 0.08 1 1 0 0
......................................................................................................................................................................................................................TCAGGCGTTCATCACAGTATAA............... 22 1 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATCTTCG..................................................................................................... 20 1 13 0.08 1 1 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGTTT............................. 23 2 13 0.08 1 1 0 0
...................................................................................................................................................................................................................CAATCAGGCGTTCATCACAGTTT................. 23 1 13 0.08 1 1 0 0
..........................................................................................................................................................................................................CCATATCGGCCATCAGGCGTTT........................... 22 2 13 0.08 1 1 0 0
........................................................................................................................................................................................................................ACGCGTTCATCACAGTATATT.............. 21 1 13 0.08 1 1 0 0
........................................................................................................................................................................................................................AGGCGTTCATCACAGGATATTGTA........... 24 2 13 0.08 1 1 0 0
.................................................................................................................................TAAATCTCTAGAAAATGTCCG..................................................................................................... 21 1 13 0.08 1 1 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCGTAA........................... 25 2 13 0.08 1 1 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAAG................................ 20 1 13 0.08 1 1 0 0
.....................................................................................................................................................................................................................ATCAGGCGTTCATCACAGGA.................. 20 1 13 0.08 1 1 0 0
......................................................................................................................................................................................................................TCAGGCGTTCACCACAGTATA................ 21 1 13 0.08 1 1 0 0
.....................................................................................................................................................................................................................ATCAGGCGTTCGTCACAGTAT................. 21 1 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTGTTA.............................................................................................. 27 3 13 0.08 1 1 0 0
............................................................................................................................................................................................................ATATCGGCAATCAGGCGTT............................ 19 0 13 0.08 1 0 0 1
.....................................................................................................................................................................................................................ATCGGGCGTTCATCACAGTAT................. 21 1 13 0.08 1 1 0 0
......................................................................................................................................................................................................................TCAGGCGTTCATCACAGTA.................. 19 0 13 0.08 1 1 0 0
.............................................................................................................................................................................................................TATCGGCAATCAGGCGTTGATTA....................... 23 2 13 0.08 1 1 0 0
...................................................................................................................................AATCTCTAGAAAATGTTCGTGC.................................................................................................. 22 1 13 0.08 1 1 0 0
..................................................................................................................................................................................................TCGTGATTCCATATCGGCA...................................... 19 1 13 0.08 1 0 1 0
...........................................................................................................................................................................................................CATATCAGCAATCAGGCGTTC........................... 21 1 13 0.08 1 1 0 0
.........................................................................................................................................................................................................TCCATATCGCCAATCAGGCGTTT........................... 23 2 13 0.08 1 1 0 0
..................................................................................................................................AGATCTCTAGAAAATGTTCGT.................................................................................................... 21 1 13 0.08 1 1 0 0
...............................................................................................................................AGTAAATCTCTAGAAAATGTTA...................................................................................................... 22 1 13 0.08 1 1 0 0
...........................................................................................................................AGTAAGTAAATCCCTAGAAAAT.......................................................................................................... 22 1 13 0.08 1 1 0 0
...................................................................................................................................................................................................................CAATCAGGCGTTCATCACTG.................... 20 1 13 0.08 1 1 0 0
......................................................................................................................................CTCTAGAAAATGTTCGTGGTA................................................................................................ 21 2 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTC................................................................................................... 22 1 13 0.08 1 1 0 0
............................................................................................................................GTAAGTAAATCTCTAGAAAAT.......................................................................................................... 21 0 13 0.08 1 1 0 0
....................................................................................................................................................................................................................AATCGGGCGTTCATCACAGTA.................. 21 1 13 0.08 1 1 0 0
...................................................................................................................................AATCTCTAGAAAATGTTCGTGA.................................................................................................. 22 1 13 0.08 1 1 0 0
..................................................................................................................................................................................................................GCAATCAGGCGTTCATCACAGTA.................. 23 0 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTT................................................................................................. 24 2 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGGTA................................................................................................ 25 2 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTGT................................................................................................ 25 2 13 0.08 1 1 0 0
.........................................................................................................................................................................................................TCCATATCGGCAATCAGGCGTC............................ 22 1 13 0.08 1 1 0 0
.................................................................................................................................TAAATCTCTAGAAAATGTTC...................................................................................................... 20 0 13 0.08 1 1 0 0
.......................................................................................................................................................................................................................CAAGCGTTCATCACAGTATA................ 20 1 13 0.08 1 1 0 0
.....................................................................................................................................TCTCTAGAAAATGTTCGTG................................................................................................... 19 0 13 0.08 1 1 0 0
.................................................................................................................................TAAATCTCTAGAAAATGTTCGTA................................................................................................... 23 1 13 0.08 1 1 0 0
.........................................................................................................................................................................................................TCCATATCGGCAATCAGGCT.............................. 20 1 13 0.08 1 1 0 0
..................................................................................................................................AAATCTTTAGAAAATGTTCGT.................................................................................................... 21 1 13 0.08 1 1 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGTGT............................. 23 1 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATTTTCGTGTA................................................................................................. 24 3 13 0.08 1 1 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCGTA............................ 24 1 13 0.08 1 1 0 0
.....................................................................................................................................................................................................................ATCAGTCGTTCATCACAGTAT................. 21 1 13 0.08 1 1 0 0
...................................................................................................................................................................................................................CAATCAGGCGTTCACCACAG.................... 20 1 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTAGTGT.................................................................................................. 23 2 13 0.08 1 1 0 0
........................................................................................................................................................................................................................AGGCGTTCATCACAGTATATTAA............ 23 2 13 0.08 1 0 1 0
...................................................................................................................................AATCTCTAGAAAATGTTCGTGTT................................................................................................. 23 2 13 0.08 1 1 0 0
.........................................................................................................................................................................................................TCCATATCGGCAATCAGGCGTT............................ 22 0 13 0.08 1 1 0 0
........................................................................................................................................CTAGAAAATGTTCGTGGGC................................................................................................ 19 0 13 0.08 1 1 0 0
......................................................................................................................................................................................................................TCAGGCGTTCATCACAGTATT................ 21 1 13 0.08 1 1 0 0
.............................................................................................................................................................................................................TATCTGCAATCAGGCGTTCATC........................ 22 1 13 0.08 1 1 0 0
....................................................................................................................................................................................................................AATCAGGCGTTCATCACAGTAT................. 22 0 13 0.08 1 1 0 0
...........................................................................................................................AGTAAGTAAATCTCTAGAAA............................................................................................................ 20 0 13 0.08 1 0 1 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTAAT............................................................................................... 26 3 13 0.08 1 1 0 0
............................................................................................................................................................................................................ATATCGGCAATCAGGCGTTCATTA....................... 24 1 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAAAAAATGTTCGT.................................................................................................... 21 1 13 0.08 1 1 0 0
..........................................................................................................................................................................................................CAATATCGGCAATCAGGCGT............................. 20 1 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTTGT.................................................................................................... 21 1 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTAGT.................................................................................................... 21 1 13 0.08 1 1 0 0
.....................................................................................................................................TCTCTAGAAAATGTTCGTGGA................................................................................................. 21 1 13 0.08 1 1 0 0
.................................................................................................................................TAAATCTCTAGAAAATGTTCGTGG.................................................................................................. 24 0 13 0.08 1 1 0 0
........................................................................................................................................................................................................TTCCATATCGGCAATCAGGCGTCT........................... 24 2 13 0.08 1 1 0 0
..............................................................................................................................AAGTAAATCTCTAGAAAATG......................................................................................................... 20 0 13 0.08 1 1 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGTC.............................. 22 2 13 0.08 1 1 0 0
..........................................................................................................................................................................................................................GCGTTCATCACAGTATATTGT............ 21 0 13 0.08 1 1 0 0
........................................................................................................................................................................................................TTCCATATCGGCAATCAGGT............................... 20 1 13 0.08 1 1 0 0
.......................................................................................................................................................................................................................CAGGCGTTCATCACAGTAAAT............... 21 1 13 0.08 1 1 0 0
..........................................................................................................................................................................................................CCATATCGGCAATCAGGCGTTC........................... 22 0 13 0.08 1 1 0 0
........................................................................................................................................................................................................................AGGCGTTCATCACAGTATAT............... 20 0 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTACT............................................................................................... 26 2 13 0.08 1 1 0 0
.................................................................................................................................TAAATCTCTAGAAAATGTTCGT.................................................................................................... 22 0 13 0.08 1 1 0 0
...........................................................................................................................................................................................................CATATCGGCAATCAGGCGTTCT.......................... 22 1 13 0.08 1 1 0 0
........................................................................................................................................................................................................TTCCATATCGGCAATCAGGCGC............................. 22 1 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTATT................................................................................................. 24 3 13 0.08 1 1 0 0
.....................................................................................................................................................................................................TGATTCCATATCGGCAAT.................................... 18 0 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTAA................................................................................................ 25 3 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTTC.................................................................................................. 23 2 13 0.08 1 1 0 0
...............................................................................................................................AGTAAATCTCTAGAAAATATT....................................................................................................... 21 1 13 0.08 1 1 0 0
....................................................................................................................................ATCTCTAGAAAATGTTCGTGGT................................................................................................. 22 1 13 0.08 1 1 0 0
...............................................................................................................................AGTAAATCTCTAGAAAATGT........................................................................................................ 20 0 13 0.08 1 1 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCG.............................. 22 0 13 0.08 1 1 0 0
.............................................................................................................................................................................................................TATCGGCAATCAGGCGTTCATT........................ 22 1 13 0.08 1 1 0 0
...............................................................................................................................AGTAAATCTCTAGAAAATG......................................................................................................... 19 0 13 0.08 1 0 1 0
...................................................................................................................................................................................................................CAATCAGGCGTTCACCACAGT................... 21 1 13 0.08 1 1 0 0
...........................................................................................................................................................................................................................CGTTCATCACAGTATATTG............. 19 0 13 0.08 1 0 1 0
...................................................................................................................................AATCTCTAGAAAATGTTCCTGT.................................................................................................. 22 2 13 0.08 1 1 0 0
.......................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCGA............................. 23 1 13 0.08 1 1 0 0
................................................................................................................................GTAAATCTCTAGAAAATGTTC...................................................................................................... 21 0 13 0.08 1 1 0 0
.........................................................................................................................................................................................................................GGCGTTCATCACAGTATATTG............. 21 0 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTAT................................................................................................ 25 3 13 0.08 1 1 0 0
..........................................................................................................................................................................................................CCATATCGGCAATCAGGCGTTT........................... 22 1 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTTC................................................................................................ 25 2 13 0.08 1 1 0 0
.....................................................................................................................................................................................................................ATCAGGCGTTCATCACAATA.................. 20 1 13 0.08 1 1 0 0
..................................................................................................................................................................................................................GCAATCAGGCGTTCATCACA..................... 20 0 13 0.08 1 1 0 0
.....................................................................................................................................TCTCTAGAAAATGTTCGTGGTA................................................................................................ 22 2 13 0.08 1 1 0 0
.......................................................................................................................................TCTAGAAAATGTTCGTGGGC................................................................................................ 20 0 13 0.08 1 1 0 0
.....................................................................................................................................................................................................TGATTCCATATCGGCAATCAGT................................ 22 1 13 0.08 1 1 0 0
.....................................................................................................................................................................................................................ATCAGGCGTTCATCACAGTATC................ 22 1 13 0.08 1 1 0 0
....................................................................................................................................ATCTCTAGAAAATGTTCGTG................................................................................................... 20 0 13 0.08 1 1 0 0
...............................................................................................................................................................................................................TCGGCAATCAGGCGTTCATCA....................... 21 0 13 0.08 1 0 0 1
.........................................................................................................................................................................................................TCCATATCGGCAATCCGGCGT............................. 21 1 13 0.08 1 1 0 0
...................................................................................................................................AATCTCTAGAAAATGTTCGT.................................................................................................... 20 0 13 0.08 1 0 0 1
..................................................................................................................................AAATCTCTAGAAAATGTTCGTTTT................................................................................................. 24 3 13 0.08 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCGTGTTT................................................................................................ 25 3 14 0.07 1 1 0 0
..........................................................................TTCTGCTGATTTGGATCCTTA............................................................................................................................................................ 21 1 14 0.07 1 1 0 0
..................................................................................................................................AAATCTCTAGAAAATGTTCATT................................................................................................... 22 2 14 0.07 1 1 0 0
...................................................................................................................................................................................................CTTGATTCCATATCGGCA...................................... 18 2 15 0.07 1 1 0 0
.....................................................................................................................................................GTGGGCTGCGCAGCAAACG................................................................................... 19 3 20 0.05 1 0 0 1
..............................ATCAGTTCGACTCTGGTAG.......................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1
.................................................................................................................................TAAAGCTCTAGAAAATGA........................................................................................................ 18 2 20 0.05 1 0 1 0

Anti-sense strand reads

GCTTACTGGTTCTCGACGAATTCCTATGCTTAGTCAAGTTGAGACCGCCACAAACTGTTACTGCCGCCAGGCCGAAGACTACTAAACCTAGGAATAAGACACCAACCAACACCATGATTAACGTCATTCATTTAGAGATCTTTTACAAGCACCCGACGCATGGTATGCGTTCATATTGCGGTCGTGTCTTGTGAAACACTAAGGTATAGCCGTTAGTCCGCAAGTAGTGTCATATAACAGTGATAGGTTGT
****************************************************************************************************..(((((((((((......)))))))))))..........................*********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V113
male body		 V115
head
 M054
female body
 V114
embryo
..........................................................................................................................................................................TCATATTGCGGTCGTGTCTTG............................................................ 21 0 6 171.67 1030 998 28 4 0
...........................................................................................................................................................................CATATTGCGGTCGTGTCTTG............................................................ 20 0 6 77.00 462 448 14 0 0
...........................................................................................................................................................................CATATTGCGGTCGTGTCTTGT........................................................... 21 0 6 52.33 314 301 12 1 0
...........................................................................................................................................................................................CTTGTGAAACACTAAGGTATA........................................... 21 0 7 51.43 360 343 17 0 0
............................................................................................................................................................................ATATTGCGGTCGTGTCTTG............................................................ 19 0 6 39.50 237 221 13 3 0
............................................................................................................................................................................................TTGTGAAACACTAAGGTATA........................................... 20 0 7 32.00 224 214 10 0 0
...........................................................................................................................................................................................CTTGTGAAACACTAAGGTAT............................................ 20 0 7 22.43 157 148 9 0 0
..........................................................................................................................................................................TCATATTGCGGTCGTGTCTTGT........................................................... 22 0 6 14.00 84 78 6 0 0
............................................................................................................................................................................ATATTGCGGTCGTGTCTTGT........................................................... 20 0 6 10.67 64 60 3 0 1
............................................................................................................................................................................................TTGTGAAACACTAAGGTATAG.......................................... 21 0 7 9.71 68 66 2 0 0
...............................................................................................................................TCATTTAGAGATCTTTTACAA....................................................................................................... 21 0 13 9.00 117 105 12 0 0
................................................................TGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 22 1 4 8.75 35 34 1 0 0
....................................................................................................................................................................................................................TTAGTCCGCAAGTAGTGTCAT.................. 21 0 13 8.54 111 99 10 2 0
.........................................................................................................................................................................TTCATATTGCGGTCGTGTCTT............................................................. 21 0 6 7.67 46 44 2 0 0
...............................................................................................................................................................................................................TGCCGTTAGTCCGCAAGTAGTG...................... 22 1 13 7.62 99 96 3 0 0
...............................................................ATGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 23 2 4 6.75 27 27 0 0 0
.................................................................GCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 21 0 4 6.50 26 26 0 0 0
..........................................................................................................................................................................TCATATTGCGGTCGTGTCTT............................................................. 20 0 6 5.83 35 33 1 1 0
.................................................................................................................................................................................GCGGTCGTGTCTTGTGAAACA..................................................... 21 0 6 5.00 30 30 0 0 0
..................................................................................................................................................................................................................CGTTAGTCCGCAAGTAGTGTC.................... 21 0 13 4.77 62 56 6 0 0
.................................................................................................................................................................GGTATGCGTTCATATTGCGGT..................................................................... 21 0 7 4.57 32 32 0 0 0
......................................................................................................................................................................................................................AGTCCGCAAGTAGTGTCATAT................ 21 0 13 4.54 59 54 5 0 0
...............................................................................................................................................................................................................AGCCGTTAGTCCGCAAGTAGT....................... 21 0 13 4.46 58 54 4 0 0
................................................................................................................................CATTTAGAGATCTTTTACAAG...................................................................................................... 21 0 13 4.00 52 50 2 0 0
...........................................................................................................................................................................................TTTGTGAAACACTAAGGTATA........................................... 21 1 7 4.00 28 28 0 0 0
.........................................................................................................................................................................TTCATATTGCGGTCGTGTCTTG............................................................ 22 0 6 4.00 24 24 0 0 0
.....................................................................................................................................................................................................................TAGTCCGCAAGTAGTGTCATA................. 21 0 13 3.69 48 42 6 0 0
..........................................................................................................................................................................................................................CGCAAGTAGTGTCATATAACA............ 21 0 13 3.54 46 40 6 0 0
...............................................................TTGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 23 2 4 3.50 14 14 0 0 0
..............................................................................................................................................................................ATTGCGGTCGTGTCTTGTGAA........................................................ 21 0 6 3.33 20 19 1 0 0
.......................................................................................................................................................................................................................GTCCGCAAGTAGTGTCATATA............... 21 0 13 3.23 42 40 1 1 0
........................................................................................................................................................................GTTCATATTGCGGTCGTGTCT.............................................................. 21 0 6 2.83 17 17 0 0 0
................................................................................................................................................................................TGCGGTCGTGTCTTGTGAAACA..................................................... 22 0 6 2.83 17 17 0 0 0
.....................................................................................................................................................................................................................TAGTCCGCAAGTAGTGTCAT.................. 20 0 13 2.62 34 29 4 1 0
..........................................................................................................................................................................ACATATTGCGGTCGTGTCTTGT........................................................... 22 1 6 2.50 15 15 0 0 0
.......................................................................................................................................................................CGTTCATATTGCGGTCGTGTC............................................................... 21 0 6 2.50 15 14 1 0 0
................................................................................................................................................................................TGCGGTCGTGTCTTGTGAAAC...................................................... 21 0 6 2.33 14 12 0 2 0
.....................................................................................................................................................................TGCGTTCATATTGCGGTCGTG................................................................. 21 0 6 2.33 14 13 1 0 0
..................................................................................................................................................................................CGGTCGTGTCTTGTGAAACACT................................................... 22 0 6 2.17 13 13 0 0 0
...................................................................................................................................TTAGAGATCTTTTACAAGCAC................................................................................................... 21 0 13 2.15 28 26 2 0 0
..............................................................................................................................................................................ATTGCGGTCGTGTCTTGTGAAA....................................................... 22 0 6 2.00 12 11 1 0 0
........................................................................................................................................................................TTTCATATTGCGGTCGTGTCTT............................................................. 22 1 6 2.00 12 12 0 0 0
............................................................................................................................................................................ATATTGCGGTCGTGTCTTGTG.......................................................... 21 0 6 2.00 12 12 0 0 0
................................................................................................................................................................TGGTATGCGTTCATATTGCGGT..................................................................... 22 0 7 1.86 13 13 0 0 0
...............................................................................................................................................................................................TGAAACACTAAGGTATAGCCGTTA.................................... 24 0 7 1.86 13 13 0 0 0
.............................................................................................................................................................................................TGTGAAACACTAAGGTATAGC......................................... 21 0 7 1.86 13 12 1 0 0
..............................................................................................................................................................................................................TAGCCGTTAGTCCGCAAGTAG........................ 21 0 13 1.85 24 22 2 0 0
........................................................................................................................................................................GTTCATATTGCGGTCGTGTC............................................................... 20 0 6 1.83 11 11 0 0 0
..........................................................................................................................................................................TCCTATTGCGGTCGTGTCTTG............................................................ 21 1 6 1.83 11 11 0 0 0
................................................................AGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 22 1 4 1.75 7 7 0 0 0
................................................................CGCCAGGCCGAAGACTACTAA...................................................................................................................................................................... 21 0 4 1.75 7 7 0 0 0
...................................................AAACTGTTACTGCCGCCAGGC................................................................................................................................................................................... 21 0 7 1.71 12 12 0 0 0
...............................................................................................................................................................................................................TGCCGTTAGTCCGCAAGTAGT....................... 21 1 13 1.54 20 19 1 0 0
.........................................................................................................................................................................ATCATATTGCGGTCGTGTCTTG............................................................ 22 1 6 1.50 9 9 0 0 0
...................................................................................................................................................................................GGTCGTGTCTTGTGAAACACT................................................... 21 0 6 1.50 9 9 0 0 0
...........................................................................................................................................................................AATATTGCGGTCGTGTCTTGT........................................................... 21 1 6 1.50 9 9 0 0 0
......................................................................................................................................................................................................................TGTCCGCAAGTAGTGTCATATA............... 22 1 13 1.46 19 18 0 1 0
.........................................................................................................................................................................................................................CCGCAAGTAGTGTCATATAAC............. 21 0 13 1.46 19 18 1 0 0
....................................................................................................................................................................................................................TTAGTCCGCAAGTAGTGTCTT.................. 21 1 13 1.38 18 14 4 0 0
............................................................................................................................................................................TTATTGCGGTCGTGTCTTGT........................................................... 20 1 6 1.33 8 8 0 0 0
...............................................................................................................................................................................TTGCGGTCGTGTCTTGTGAAA....................................................... 21 0 6 1.33 8 8 0 0 0
...........................................................................................................................................................................................TTTGTGAAACACTAAGGTATAG.......................................... 22 1 7 1.29 9 9 0 0 0
............................................................CTGCCGCCAGGCCGAAGACTA.......................................................................................................................................................................... 21 0 4 1.25 5 5 0 0 0
...........................................................TCTGCCGCCAGGCCGAAGACTA.......................................................................................................................................................................... 22 1 4 1.25 5 5 0 0 0
.........................................................................................................................................................................ATCATATTGCGGTCGTGTCTTGT........................................................... 23 1 6 1.17 7 6 1 0 0
..................................................................................................................................................................................TGGTCGTGTCTTGTGAAACACT................................................... 22 1 6 1.17 7 7 0 0 0
..................................................................................................................................................................................CGGTCGTGTCTTGTGAAACA..................................................... 20 0 6 1.17 7 7 0 0 0
...............................................................................................................................................................................................TGAAACACTAAGGTATAGCCGTT..................................... 23 0 7 1.14 8 8 0 0 0
........................................................................................................................................................................................................AAGGTATAGCCGTTAGTCCGC.............................. 21 0 13 1.08 14 10 4 0 0
..............................................................................................TAAGACACCAACCAACACCAT........................................................................................................................................ 21 0 8 1.00 8 6 1 1 0
............................................................................................................................................................................................TTGTGAAACACTAAGGTATAGC......................................... 22 0 7 1.00 7 7 0 0 0
..............................................................................................................................................................................ATTGCGGTCGTGTCTTGTG.......................................................... 19 0 6 1.00 6 6 0 0 0
..........................................................TACTGCCGCCAGGCCGAAGACT........................................................................................................................................................................... 22 0 4 1.00 4 4 0 0 0
....................................................................TTGCCGAAGACTACTAAACCTA................................................................................................................................................................. 22 2 4 1.00 4 4 0 0 0
............................................................TTGCCGCCAGGCCGAAGACTAC......................................................................................................................................................................... 22 1 4 1.00 4 4 0 0 0
..............................................................................................................................................................................................................TAGCCGTTAGTCCGCAAGTAGT....................... 22 0 13 1.00 13 10 3 0 0
...................................................................................................................................................................................................................TTTAGTCCGCAAGTAGTGTCAT.................. 22 1 13 0.92 12 12 0 0 0
.......................................TGAGACCGCCACAAACTGTTA............................................................................................................................................................................................... 21 0 7 0.86 6 6 0 0 0
......................................................................................................................TAACGTCATTCATTTAGAGAT................................................................................................................ 21 0 13 0.85 11 10 1 0 0
.....................................................................................................................................................................................TCGTGTCTTGTGAAACACTAA................................................. 21 0 6 0.83 5 5 0 0 0
...........................................................................................................................................................................CACATTGCGGTCGTGTCTTGT........................................................... 21 1 6 0.83 5 5 0 0 0
...............................................................................................................................................................................TTGCGGTCGTGTCTTGTGAAAC...................................................... 22 0 6 0.83 5 5 0 0 0
...........................................................................................................................................................................CCTATTGCGGTCGTGTCTTG............................................................ 20 1 6 0.83 5 5 0 0 0
..............................................................................................................................................................................TTTGCGGTCGTGTCTTGTGAAA....................................................... 22 1 6 0.83 5 5 0 0 0
................................................................................................................................CATTTAGAGATCTTTTACAAGC..................................................................................................... 22 0 13 0.77 10 10 0 0 0
..........................................................................................................................................................................................................................CGCAAGTAGTGTCATATAAC............. 20 0 13 0.77 10 8 2 0 0
...............................................................TCGCCAGGCCGAAGACTACTAA...................................................................................................................................................................... 22 1 4 0.75 3 3 0 0 0
....................................................................ATGCCGAAGACTACTAAACCTA................................................................................................................................................................. 22 1 4 0.75 3 3 0 0 0
........................................................................CGAAGACTACTAAACCTAGGA.............................................................................................................................................................. 21 0 4 0.75 3 3 0 0 0
..............................................................TATGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 24 3 4 0.75 3 3 0 0 0
................................................................CGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 22 0 4 0.75 3 2 1 0 0
...........................................................................AGACTACTAAACCTAGGAATA........................................................................................................................................................... 21 0 4 0.75 3 3 0 0 0
..............................................................TTTGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 24 3 4 0.75 3 3 0 0 0
..........................................................................................................................................................................................TCTTGTGAAACACTAAGGTAT............................................ 21 0 7 0.71 5 5 0 0 0
..................................................CAAACTGTTACTGCCGCCAGGC................................................................................................................................................................................... 22 0 7 0.71 5 5 0 0 0
...................................................................................AAACCTAGGAATAAGACACCA................................................................................................................................................... 21 0 7 0.71 5 5 0 0 0
..................................................................................................................................................................GTATGCGTTCATATTGCGGTC.................................................................... 21 0 7 0.71 5 5 0 0 0
.......................................................................................................................................................................................................................GTCCGCAAGTAGTGTCTTATA............... 21 1 13 0.69 9 9 0 0 0
................................................................................................................................................................................................................GCCGTTAGTCCGCAAGTAGTG...................... 21 0 13 0.69 9 7 2 0 0
...........................................................................................................................................................................AATATTGCGGTCGTGTCTTG............................................................ 20 1 6 0.67 4 4 0 0 0
..........................................................................................................................................................................ATATATTGCGGTCGTGTCTTGT........................................................... 22 2 6 0.67 4 4 0 0 0
.............................................................................................................................................................................TATTGCGGTCGTGTCTTGTGA......................................................... 21 0 6 0.67 4 4 0 0 0
............................................................................................................................................................................TTATTGCGGTCGTGTCTTG............................................................ 19 1 6 0.67 4 4 0 0 0
..........................................................................................................................................................................TCATATTGCGGCCGTGTCTTG............................................................ 21 1 6 0.67 4 4 0 0 0
.............................................................................................................................................................................TATTGCGGTCGTGTCTTGT........................................................... 19 0 6 0.67 4 3 1 0 0
...............................................................................................................................................................................TTGCGGTCGTGTCTTGTGAAACA..................................................... 23 0 6 0.67 4 4 0 0 0
...........................................................................................................................TCATTCATTTAGAGATCTTTT........................................................................................................... 21 0 13 0.62 8 6 2 0 0
...............................................................................................................................TCATTTAGAGATCTTTTACAAG...................................................................................................... 22 0 13 0.62 8 4 3 1 0
......................................................................................................................................................................................................................AGTCCGCAAGTAGTGTCTTAT................ 21 1 13 0.62 8 8 0 0 0
...................................................................................................................................................................................................ACACTAAGGTATAGCCGTTA.................................... 20 0 7 0.57 4 4 0 0 0
...........................................................................................................................................................................................TTTGTGAAACACTAAGGTATAGC......................................... 23 1 7 0.57 4 4 0 0 0
...........................................................................................................................................................................................CCTGTGAAACACTAAGGTAT............................................ 20 1 7 0.57 4 4 0 0 0
....................................................................................................................................................................................................................TTAGTCCGCAAGTAGTGTCATA................. 22 0 13 0.54 7 6 1 0 0
.....................................................................................................................................................................................................................TAGTCCGCAAGTAGTGTCTTA................. 21 1 13 0.54 7 6 0 1 0
...................................................................................................................................................................................................................GTTAGTCCGCAAGTAGTGTCT................... 21 1 13 0.54 7 6 0 1 0
.......................................................................TCGAAGACTACTAAACCTAGGA.............................................................................................................................................................. 22 1 4 0.50 2 2 0 0 0
.....................................................................TGCCGAAGACTACTAAACCTAG................................................................................................................................................................ 22 1 4 0.50 2 2 0 0 0
.......................................................................CCGAAGACTACTAAACCTAGGA.............................................................................................................................................................. 22 0 4 0.50 2 2 0 0 0
..................................................................................................................................................................................CGGTCGTGTCTTGTGAAACAC.................................................... 21 0 6 0.50 3 3 0 0 0
........................................................................................................................................................................TTTCATATTGCGGTCGTGTCTTG............................................................ 23 1 6 0.50 3 3 0 0 0
....................................................................................................................................................................ATGCGTTCATATTGCGGTCGT.................................................................. 21 0 6 0.50 3 3 0 0 0
..............................................................................................................................................................................TTTGCGGTCGTGTCTTGTGAAAC...................................................... 23 1 6 0.50 3 3 0 0 0
.............................................................TGCCGCCAGGCCGAAGACTAC......................................................................................................................................................................... 21 0 4 0.50 2 2 0 0 0
...............................................................CTGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 23 1 4 0.50 2 2 0 0 0
...........................................................................................................................................................................TATATTGCGGTCGTGTCTTG............................................................ 20 1 6 0.50 3 3 0 0 0
..........................................................................................................................................................................TCTTATTGCGGTCGTGTCTTG............................................................ 21 1 6 0.50 3 3 0 0 0
..........................................................................................................................................................................TCGTATTGCGGTCGTGTCTTG............................................................ 21 1 6 0.50 3 3 0 0 0
..........................................................................................................................................................................TCATATTGCGGTCGTGCCTTG............................................................ 21 1 6 0.50 3 3 0 0 0
.........................................................TTACTGCCGCCAGGCCGAAGACT........................................................................................................................................................................... 23 0 4 0.50 2 2 0 0 0
..................................................................CCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 20 0 4 0.50 2 2 0 0 0
...............................................................................................................................................................................TTGCGGTCGTGTCTTGTGAA........................................................ 20 0 6 0.50 3 1 2 0 0
.................................................................................................................................................................ATTATGCGTTCATATTGCGGTCG................................................................... 23 2 6 0.50 3 3 0 0 0
.........................................................................GAAGACTACTAAACCTAGGAA............................................................................................................................................................. 21 0 4 0.50 2 2 0 0 0
...........................................................................AGACTACTAAACCTAGGAAT............................................................................................................................................................ 20 0 4 0.50 2 2 0 0 0
............................................................TTGCCGCCAGGCCGAAGACTACT........................................................................................................................................................................ 23 1 4 0.50 2 2 0 0 0
..........................................................................................................................................................................TCATATTGCGGTCGTGTCTTT............................................................ 21 1 6 0.50 3 3 0 0 0
............................................................................GACTACTAAACCTAGGAATA........................................................................................................................................................... 20 0 4 0.50 2 2 0 0 0
............................................................TTGCCGCCAGGCCGAAGACTA.......................................................................................................................................................................... 21 1 4 0.50 2 2 0 0 0
.....................................................................................................................................................................TGCGTTCATATTGCGGTCGTGT................................................................ 22 0 6 0.50 3 3 0 0 0
.................................................................................................................................ATTTAGAGATCTTTTACAAGC..................................................................................................... 21 0 13 0.46 6 6 0 0 0
..................................................................................................................................................................................................................TGTTAGTCCGCAAGTAGTGTCA................... 22 1 13 0.46 6 6 0 0 0
...................................................................................................................................................................................................................GTTAGTCCGCAAGTAGTGTCA................... 21 0 13 0.46 6 6 0 0 0
...................................................................................................................................................................................................................ATTAGTCCGCAAGTAGTGTCAT.................. 22 1 13 0.46 6 6 0 0 0
.............................................................................................................................................................GCATGGTATGCGTTCATATTG......................................................................... 21 0 13 0.46 6 5 1 0 0
.................................................................................................................................................................................................................CCGTTAGTCCGCAAGTAGTGT..................... 21 0 13 0.46 6 4 2 0 0
...........................................................................................................................................................................................CTCGTGAAACACTAAGGTATA........................................... 21 1 7 0.43 3 3 0 0 0
...........................................................................................................................................................................................CTTGTGAAACACTAAGGTATAG.......................................... 22 0 7 0.43 3 3 0 0 0
.................................................................................................................................................................TGTATGCGTTCATATTGCGGTC.................................................................... 22 1 7 0.43 3 3 0 0 0
........................................GAGACCGCCACAAACTGTTACT............................................................................................................................................................................................. 22 0 7 0.43 3 2 0 1 0
.......................................TGAGACCGCCACAAACTGTTAC.............................................................................................................................................................................................. 22 0 7 0.43 3 3 0 0 0
.............................................................................................................................................................................................TGTGAAACACTAAGGTATAG.......................................... 20 0 7 0.43 3 3 0 0 0
...............................................CCACAAACTGTTACTGCCGCC....................................................................................................................................................................................... 21 0 7 0.43 3 3 0 0 0
................................................................................................................................................................................................GAAACACTAAGGTATAGCCGTTA.................................... 23 0 7 0.43 3 3 0 0 0
...................................................................................................................................................AGCACCCGACGCATGGTATGC................................................................................... 21 0 7 0.43 3 3 0 0 0
....................................................................................................................................................GCACCCGACGCATGGTATGC................................................................................... 20 0 7 0.43 3 2 1 0 0
...................................................................................................................................................TGCACCCGACGCATGGTATGC................................................................................... 21 1 7 0.43 3 2 1 0 0
..........................................................................................................................................................................................TTTTGTGAAACACTAAGGTATAG.......................................... 23 1 7 0.43 3 3 0 0 0
......................................................................................................................................................................................................................AGTCCGCAAGTAGTGTCAT.................. 19 0 13 0.38 5 5 0 0 0
.......................................................................................................................................................................................................TAAGGTATAGCCGTTAGTCC................................ 20 0 13 0.38 5 4 1 0 0
..............................................................................................................................................................................................................TAGCCGTTAGTCCGCAAGTA......................... 20 0 13 0.38 5 5 0 0 0
......................................................................................................................................................................................................................AGTCCGCAAGTAGTGTCATA................. 20 0 13 0.38 5 5 0 0 0
.............................................................................................................................................................................................................ATAGCCGTTAGTCCGCAAGTA......................... 21 0 13 0.38 5 5 0 0 0
.....................................................................................................................................................................................................................TAGTCCGCAAGTAGTGTCTT.................. 20 1 13 0.38 5 4 1 0 0
.......................................................................................................................................................................................................................GTCCGCAAGTAGTGTCATAT................ 20 0 13 0.38 5 5 0 0 0
..........................................................................................................................................................................GTATATTGCGGTCGTGTCTTGT........................................................... 22 2 6 0.33 2 2 0 0 0
...........................................................................................................................................................................CATATTGCGGTCGTGTCTTT............................................................ 20 1 6 0.33 2 1 1 0 0
..............................................................................................................................................................................TTTGCGGTCGTGTCTTGTGAAACA..................................................... 24 1 6 0.33 2 2 0 0 0
...........................................................................................................................................................................CAAATTGCGGTCGTGTCTTGT........................................................... 21 1 6 0.33 2 2 0 0 0
.........................................................................................................................................................................TTCATATTGCGGTCGTGTCTTGT........................................................... 23 0 6 0.33 2 2 0 0 0
..................................................................................................................................................................................AGGTCGTGTCTTGTGAAACACT................................................... 22 1 6 0.33 2 1 1 0 0
.........................................................................................................................................................................TTAATATTGCGGTCGTGTCTT............................................................. 21 1 6 0.33 2 2 0 0 0
..........................................................................................................................................................................TCATCTTGCGGTCGTGTCTTG............................................................ 21 1 6 0.33 2 2 0 0 0
..........................................................................................................................................................................TCATATTGCGGTCGTGTCTTA............................................................ 21 1 6 0.33 2 2 0 0 0
...................................................................................................................................................................................GGTCGTGTCTTGTGAAACACTA.................................................. 22 0 6 0.33 2 2 0 0 0
.....................................................................................................................................................................................................................................TCATATAACAGTGATAGGTT.. 20 0 3 0.33 1 1 0 0 0
...........................................................................................................................................................................CATATTGCTGTCGTGTCTTG............................................................ 20 1 6 0.33 2 1 1 0 0
..........................................................................................................................................................................TCATATTGCGGTCGTGTCT.............................................................. 19 0 6 0.33 2 2 0 0 0
..........................................................................................................................................................................TCACATTGCGGTCGTGTCTTGT........................................................... 22 1 6 0.33 2 2 0 0 0
...........................................................................................................................................................................CATATTGCGGTCGTGTCTCG............................................................ 20 1 6 0.33 2 2 0 0 0
................................................................................................................................................................................AGCGGTCGTGTCTTGTGAAACA..................................................... 22 1 6 0.33 2 2 0 0 0
...........................................................................................................................................................................TATATTGCGGTCGTGTCTTGT........................................................... 21 1 6 0.33 2 2 0 0 0
......................................................................................................................................................................................................................................CATATAACAGTGATAGGTTGT 21 0 3 0.33 1 1 0 0 0
.............................................................................................................................................................................TATTGCGGTCGTGTCTTGTG.......................................................... 20 0 6 0.33 2 2 0 0 0
......................................................................................................................................................................GCGTTCATATTGCGGTCGTGT................................................................ 21 0 6 0.33 2 2 0 0 0
..........................................................................................................................................................................................................................TGCAAGTAGTGTCATATAACAG........... 22 1 12 0.33 4 4 0 0 0
...........................................................................................................................................................................CATATTGCGGTCGTGTCTTGTG.......................................................... 22 0 6 0.33 2 2 0 0 0
............................................................................................................................................................................ATATTGCGGCCGTGTCTTG............................................................ 19 1 6 0.33 2 2 0 0 0
............................................................................................................................................................................ATATTGCGGTCGTGTCTTT............................................................ 19 1 6 0.33 2 2 0 0 0
...................................................................................................................................................................................................................................TGTCATATAACAGTGATAGGTT.. 22 0 3 0.33 1 1 0 0 0
........................................................................................................................................................................ATTCATATTGCGGTCGTGTCTT............................................................. 22 1 6 0.33 2 2 0 0 0
..................................................................................................................................................................................................................................CTGTCATATAACAGTGATAGGTT.. 23 1 3 0.33 1 0 1 0 0
.........................................................................................................................................................................................................................CCGCAAGTAGTGTCATATGACAGTGA........ 26 1 3 0.33 1 1 0 0 0
.............................................................................................................................................................................TATTGCGGTCGTGTCTTGTGAAA....................................................... 23 0 6 0.33 2 2 0 0 0
.........................................................................................................................................................................................................................ATGCAAGTAGTGTCATATAACAGT.......... 24 2 3 0.33 1 1 0 0 0
............................................................................................................................................................................TTATTGCGGTCGTGTCTTGTGAAA....................................................... 24 1 6 0.33 2 2 0 0 0
..........................................................................................................................................................................TCACATTGCGGTCGTGTCTTG............................................................ 21 1 6 0.33 2 2 0 0 0
.........................................................................................................................................................................CTCATATTGCGGTCGTGTCTTG............................................................ 22 1 6 0.33 2 2 0 0 0
..............................................................................................................................................................................................................ATGCCGTTAGTCCGCAAGTAGT....................... 22 2 13 0.31 4 3 1 0 0
..............................................................................................................................................................CATGGTATGCGTTCATATTGC........................................................................ 21 0 13 0.31 4 4 0 0 0
...............................................................................................................................TCATTTAGAGATCTTTTACA........................................................................................................ 20 0 13 0.31 4 4 0 0 0
.........................................................................................................................................................................................................AGGTATAGCCGTTAGTCCGC.............................. 20 0 13 0.31 4 4 0 0 0
......................................................................................................................................................................................................................TGTCCGCAAGTAGTGTCTTATA............... 22 2 13 0.31 4 4 0 0 0
........................................................................................................................ACGTCATTCATTTAGAGATCT.............................................................................................................. 21 0 13 0.31 4 3 1 0 0
..............................................................................................................................TTCATTTAGAGATCTTTTACA........................................................................................................ 21 0 13 0.31 4 4 0 0 0
.............................................................................................................................................................GCATGGTATGCGTTCATATT.......................................................................... 20 0 13 0.31 4 3 1 0 0
............................................................................................................................................................................................TTGTGAAACACTAAGATATA........................................... 20 1 7 0.29 2 2 0 0 0
.........................................TGACCGCCACAAACTGTTACTG............................................................................................................................................................................................ 22 1 7 0.29 2 2 0 0 0
.......................................TGAGACCGCCACAAACTGTTACT............................................................................................................................................................................................. 23 0 7 0.29 2 2 0 0 0
................................................................................................................................................................AGGTATGCGTTCATATTGCGGT..................................................................... 22 1 7 0.29 2 2 0 0 0
.............................................................................................................................................................................................TGAGAAACACTAAGGTATAGC......................................... 21 1 7 0.29 2 2 0 0 0
..............................................................................................................................................................................................TTGAAACACTAAGGTATAGCCGTT..................................... 24 1 7 0.29 2 1 1 0 0
...........................................................................................................................................................................................ATTGTGAAACACTAAGGTATA........................................... 21 1 7 0.29 2 2 0 0 0
...........................................................................................................................................................................................CTTGTGAAACACTAAGGTACA........................................... 21 1 7 0.29 2 2 0 0 0
....................................................................................AACCTAGGAATAAGACACCA................................................................................................................................................... 20 0 7 0.29 2 2 0 0 0
...........................................................................................................................................................................................CTTGTGCAACACTAAGGTATA........................................... 21 1 7 0.29 2 2 0 0 0
...............................................................................................................................................................ATGGTATGCGTTCATATTGCGGT..................................................................... 23 0 7 0.29 2 1 1 0 0
............................................................................................................................................................................ATATTGCGGTCCTGTCTTG............................................................ 19 1 7 0.29 2 2 0 0 0
...........................................................................................................................................................................................CTTGCGAAACACTAAGGTAT............................................ 20 1 7 0.29 2 2 0 0 0
...........................................................................................................................................................................................ATTGTGAAACACTAAGGTATAG.......................................... 22 1 7 0.29 2 2 0 0 0
.............................................................................................................................................................................................TGTGAAACACTAAGGTATA........................................... 19 0 7 0.29 2 0 2 0 0
.................................................................................................................................................................GGTATGCTTTCATATTGCGGT..................................................................... 21 1 7 0.29 2 2 0 0 0
...............................................................................................................................................................................................TGAAACACTAAGGTATAGCCG....................................... 21 0 7 0.29 2 1 1 0 0
......................................TTGAGAGCGCACCAAACTG.................................................................................................................................................................................................. 19 3 15 0.27 4 2 1 1 0
........................................................TTTACTGCCGCCAGGCCGAAGACT........................................................................................................................................................................... 24 1 4 0.25 1 1 0 0 0
...............................................................ATGCCAGGGCGAAGACTACTAAA..................................................................................................................................................................... 23 3 4 0.25 1 1 0 0 0
................................................................GGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0
.................................................................................CTAAACCTAGGAATAAGACACC.................................................................................................................................................... 22 0 4 0.25 1 1 0 0 0
................................................................TGTCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 22 2 4 0.25 1 1 0 0 0
................................................................CACCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0
.........................................................................TAAGACTACTAAACCTAGGAATA........................................................................................................................................................... 23 1 4 0.25 1 1 0 0 0
......................................................................GCCGAAGACTACTAAACCTAGG............................................................................................................................................................... 22 0 4 0.25 1 1 0 0 0
.............................................................TTTTGCCAGGCCGAAGACTACT........................................................................................................................................................................ 22 3 4 0.25 1 1 0 0 0
...............................................................ATGCCAGGCCGAAGACTACTAA...................................................................................................................................................................... 22 2 4 0.25 1 1 0 0 0
...........................................................................TGACTACTAAACCTAGGAATA........................................................................................................................................................... 21 1 4 0.25 1 0 1 0 0
..............................................................TGTGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 24 3 4 0.25 1 1 0 0 0
..........................................................TACTGCCGCCAGGCCGAAGGCT........................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0
........................................................................CGAAGACTACTAAACCTAGGAA............................................................................................................................................................. 22 0 4 0.25 1 1 0 0 0
...........................................................ACTGCAGCCAGGCCGAAGACTA.......................................................................................................................................................................... 22 1 4 0.25 1 0 1 0 0
.............................................................TATTGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 25 3 4 0.25 1 1 0 0 0
...............................................................................TACTAAAACTAGGAATAAGACA...................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0
................................................................CGCCAGGCCGACGACTACTAAA..................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0
................................................................AGCCACGCCGAAGACTACTAAA..................................................................................................................................................................... 22 2 4 0.25 1 1 0 0 0
............................................................................GTCTACTAAACCTAGGAATA........................................................................................................................................................... 20 1 4 0.25 1 1 0 0 0
...............................................................TTGCTAGGCCGAAGACTACTAAA..................................................................................................................................................................... 23 3 4 0.25 1 1 0 0 0
.........................................................TATCTGCCGCCAGGCCGAAGACTA.......................................................................................................................................................................... 24 2 4 0.25 1 1 0 0 0
.......................................................................CCGAAGACTACTAAACCTAGGAA............................................................................................................................................................. 23 0 4 0.25 1 1 0 0 0
..........................................................TTGTGCCGCCAGGCCGAAGACTACT........................................................................................................................................................................ 25 2 4 0.25 1 1 0 0 0
...............................................................AAGCCAGGCCGAAGACTACT........................................................................................................................................................................ 20 2 4 0.25 1 1 0 0 0
.................................................................CCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 21 1 4 0.25 1 1 0 0 0
.................................................................TCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 21 1 4 0.25 1 1 0 0 0
...............................................................ATGCCAGGCCGAAGACCACTAAA..................................................................................................................................................................... 23 3 4 0.25 1 1 0 0 0
...........................................................AATGCCGCCAGGCCGAAGACTACT........................................................................................................................................................................ 24 1 4 0.25 1 1 0 0 0
..............................................................AGTGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 24 3 4 0.25 1 1 0 0 0
................................................................TGCCAGGCCGAAGACTACTAA...................................................................................................................................................................... 21 1 4 0.25 1 1 0 0 0
.................................................................GCCAGGCCGAAGACTACTAA...................................................................................................................................................................... 20 0 4 0.25 1 1 0 0 0
...........................................................................................................................................................................................................................GCAAGTAGTGTCATATAACAG........... 21 0 12 0.25 3 3 0 0 0
..............................................................GCCGCCAGGCCGAAGACTACT........................................................................................................................................................................ 21 0 4 0.25 1 1 0 0 0
........................................................................TGAAGACTACTAAACCTAGGA.............................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0
.................................................................GCCAGTCCGAAGACTACTAAA..................................................................................................................................................................... 21 1 4 0.25 1 1 0 0 0
...........................................................TCTTCCGACAGGCCGAAGACTA.......................................................................................................................................................................... 22 3 4 0.25 1 1 0 0 0
..........................................................TATTGCCGCCAGGCCGAAGACTACT........................................................................................................................................................................ 25 1 4 0.25 1 1 0 0 0
...............................................................................TACTAAACCTAGGAATAAGA........................................................................................................................................................ 20 0 4 0.25 1 1 0 0 0
............................................................TTGCCGCCAGGCCGAAGGCTACT........................................................................................................................................................................ 23 2 4 0.25 1 1 0 0 0
.....................................................................TGCCGAAGACTACTAAACCTA................................................................................................................................................................. 21 1 4 0.25 1 1 0 0 0
...........................................................TATGCCGCCAGGCCGAAGACTACT........................................................................................................................................................................ 24 2 4 0.25 1 1 0 0 0
...............................................................ACGCCAGGCCGAAGACTACTAA...................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0
...............................................................ATGCCAGGCCGAAGACTACTAAAC.................................................................................................................................................................... 24 2 4 0.25 1 1 0 0 0
......................................................................ACTGAAGACTACTAAACCTAGGAA............................................................................................................................................................. 24 2 4 0.25 1 1 0 0 0
.........................................................................GTAGACTACTAAACCTAGGA.............................................................................................................................................................. 20 1 4 0.25 1 1 0 0 0
.............................................................TGCCGCCAGGCCGAAGACTACT........................................................................................................................................................................ 22 0 4 0.25 1 1 0 0 0
...............................................................TAGCCAGGCCGAAGACTACTAAA..................................................................................................................................................................... 23 2 4 0.25 1 1 0 0 0
......................................................................................................................................................................................................................AGTCCGCAAGTAGTGTCATATA............... 22 0 13 0.23 3 3 0 0 0
..................................................................................................................................................................................................................TTTTAGTCCGCAAGTAGTGTCAT.................. 23 2 13 0.23 3 3 0 0 0
..........................................................................................................................GTCATTCATTTAGAGATCTTT............................................................................................................ 21 0 13 0.23 3 3 0 0 0
.........................................................................................................................................................................................................AGGTATAGCCGTTAGTCCGCA............................. 21 0 13 0.23 3 2 1 0 0
.................................................................................................................................................................................................................TATTTAGTCCGCAAGTAGTGTCAT.................. 24 3 13 0.23 3 3 0 0 0
.................................................................................................................................................................................................................CCGTTAGTCCGCAAGTAGTGTC.................... 22 0 13 0.23 3 2 1 0 0
................................................................................................................................CATTTAGAGATCTTTTACAA....................................................................................................... 20 0 13 0.23 3 2 1 0 0
.....................................................................................................................................................................................................................TAGTCCGCAAGTAGTGTCATAT................ 22 0 13 0.23 3 3 0 0 0
............................................................................................................................................................CGCATGGTATGCGTTCATATT.......................................................................... 21 0 13 0.23 3 2 0 1 0
.......................................................................................................................................................................................................TAAGGTATAGCCGTTAGTCCGC.............................. 22 0 13 0.23 3 3 0 0 0
..........................................................................................................................................................................ATATATTGCGGTCGTGTCTTG............................................................ 21 2 6 0.17 1 1 0 0 0
...............................................................................................................................................................................ATGCGGTCGTGTCTTGTGAAACA..................................................... 23 1 6 0.17 1 1 0 0 0
..........................................................................................................................................................................ACATATTGCGGTCGTGTCTT............................................................. 20 1 6 0.17 1 1 0 0 0
..........................................................................................................................................................................TCATATTGCGGTCGTGTCCTGT........................................................... 22 1 6 0.17 1 1 0 0 0
........................................................................................................................................................................................................................ATTGCAAGTAGTGTCATATAACAG........... 24 3 12 0.17 2 2 0 0 0
............................................................................................................................................................................ATATTGCGGTCGTGTCTTGC........................................................... 20 1 6 0.17 1 1 0 0 0
.......................................................................................................................................................................TTTTCATATTGCGGTCGTGTCTTG............................................................ 24 2 6 0.17 1 1 0 0 0
............................................................................................................................................................................ATATTGCGGTCGCGTCTTG............................................................ 19 1 6 0.17 1 1 0 0 0
.................................................................................................................................................................................GCGGTCGTGTCTTGTGAAAC...................................................... 20 0 6 0.17 1 1 0 0 0
.................................................................................................................................................................TTTATGCGTTCATATTGCGGTCG................................................................... 23 2 6 0.17 1 0 1 0 0
..........................................................................................................................................................................TCATATTGCGGTCGTGTTTTG............................................................ 21 1 6 0.17 1 1 0 0 0
.............................................................................................................................................................................TATTGCGGTCGTGTCTTGTGAA........................................................ 22 0 6 0.17 1 1 0 0 0
...........................................................................................................................................................................CATATTGCGGTCGTGTCTTGTC.......................................................... 22 1 6 0.17 1 0 1 0 0
...........................................................................................................................................................................GATATTGCGGTCGTGTCTTG............................................................ 20 1 6 0.17 1 1 0 0 0
.......................................................................................................................................................................ATATCATATTGCGGTCGTGTCTTG............................................................ 24 3 6 0.17 1 1 0 0 0
..................................................................................................................................................................AGATGCGTTCATATTGCGGTCGTGT................................................................ 25 2 6 0.17 1 1 0 0 0
............................................................................................................................................................................ATACTGCGGTCGTGTCTTG............................................................ 19 1 6 0.17 1 1 0 0 0
...................................................................................................................................................................AATGCGTTCATATTGCGGTCGTGT................................................................ 24 1 6 0.17 1 1 0 0 0
...............................................................................................................................................................................TCGCGGTCGTGTCTTGTGAA........................................................ 20 1 6 0.17 1 1 0 0 0
........................................................................................................................................................................GTTCATATTGCGGTCGTGTCTTG............................................................ 23 0 6 0.17 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_17:1018649-1018899 + dse_913 CGAA-TGACCAA-GAGCTGCTTAAGGATACGAATCAGTTCAACTCTGGCGGTGTTTGACAATGACGGCGGTCCGGCTTCTGATGATTTGGATCCTTATTCTGTGGTTGGTTGTGGTACTAATTGCAGTAAGTAAATCTCTAGAAAATGTTCGTGGGC-TGCGTACCATACGCAAGTATAACGCC--------------------AGCACAGAACACTTTGTGATTCCATATCGGCAATCAGGCGTTCATCACAGTATATTGTCACTATCCAACA
droSim2 x:16120571-16120816 - CGAA-TGACCAA-GAGCTGCTTAAGGATACGAATCAGTTCAACTCTGGCGGTGTTTGACAATGACGGCGGTCCGGCTTCTGATGATTTGGATCCATATTCTGTGGTTGGTTGTGGTACTTATTGCAGTAAGTAAATCCCTCGAAAATGTTCGCGGGCTTGCGTACCATACGCAAGTATAAAGCTAAAGTATAAAGGCAAGTATAAG--------------------------GGCAATCAGGCGTTCATCACAGTATATTGTCGCTATCCAACA
dm3 chr2R:16207466-16207509 + CGAA-TGACCAA-GAGCTGCTTAAGGATTCGAATCAATTCAACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:10358862-10358903 + CGAA-TCCCCAA-GAACTGCTTCAGCATACGCAGGAGTTCAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:12995215-12995261 - CGAG-TCCCCAA-GAACTGCTCCAAGATACAGAGGAGTTCAACTTTAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409474:1768202-1768248 - CGAA-CCCTCAA-GAGTTGCTAGAAGCAACGGATGAGTTCATCTTTAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302291:3105893-3105941 - CGAA-CCCCCAA-GACATGCTCAAGGATACGCAAGAGTTCAACTTCAACGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415159:234876-234938 - CGAA-TCCCCAG-GAATTGCTCCAGGACACCGAAGAGTTCAACTTTAACAGTT-AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAATCAGG--------------------------------
droEle1 scf7180000491201:445739-445782 + TGAA-CCCCCAA-CAAATGCTCCAGGATACTCAGGAGTTTAACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000777843:45514-45557 - TGAG-CCTCCAG-CAAATGCTCCAGGATACACATGAGTTCAACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000454039:1498237-1498281 + AACAGCCCACAG-CAGATGCTCCAGGACACGCAGGAGTTCAACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302471:659681-659720 + CGAC-AGCCGAG-GATTTGTTGTTGGCAACGAATGAGTTCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:3075285-3075348 - ATGT-CCGTGGTGGACATGCTCAAGGACACCGATGAGTTCAACTTTGCG-AAATCCGGAAACGACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004822:1360725-1360779 + AATC-TGCCCAG-GAAATGCTTACCGATACGAATGCATTCACCTTTCAAACTGTCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:28840704-28840728 - CGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAATTGTCACTCACCAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CGAA-TGACCAA-GAGCTGCTTAAGGATACGAATCAGTTCAACTCTGGCGGTGTTTGACAATGACGGCGGTCCGGCTTCTGATGATTTGGATCCTTATTCTGTGGTTGGTTGTGGTACTAATTGCAGTAAGTAAATCTCTAGAAAATGTTCGTGGGC-TGCGTACCATACGCAAGTATAACGCC--------------------AGCACAGAACACTTTGTGATTCCATATCGGCAATCAGGCGTTCATCACAGTATATTGTCACTATCCAACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................AAATCTCTAGAAAATGTTCGT.........................................................................................................................211317.00221321602
..............................................................................................................................................................................................................................ATTCCATATCGGCAATCAGGC...............................21137.319508807
..........................................................................................................................................................................................................................................CAATCAGGCGTTCATCACAGT...................21136.238127306
.............................................................................................................................................................................................................................................TCAGGCGTTCATCACAGTATA................21135.236806503
............................................................................................................................................................................................................................................ATCAGGCGTTCATCACAGTAT.................21133.925115000
....................................................................................................................................AAATCTCTAGAAAATGTTCG..........................................................................................................................20132.923813502
...................................................................................................................................TAAATCTCTAGAAAATGTTCG..........................................................................................................................21132.693503401
....................................................................................................................................AAATCTCTAGAAAATGTTCGTGT.......................................................................................................................23132.383103100
.....................................................................................................................................AATCTCTAGAAAATGTTCGTG........................................................................................................................21132.232922403
................................................................................................................................................................................................................................TCCATATCGGCAATCAGGCGT.............................21132.232902702
.........................................................................................................................................................................................................................................GCAATCAGGCGTTCATCACAG....................21131.692202101
..............................................................................................................................................................................................................................................CAGGCGTTCATCACAGTATAT...............21131.622102100
...............................................................................................................................................................................................................................................AGGCGTTCATCACAGTATATT..............21131.542002000
....................................................................................................................................AAATCTCTAGAAAATGTTCGTT........................................................................................................................22131.461901900
..................................................................................................................................................................................................................................CATATCGGCAATCAGGCGTTC...........................21131.151501500
.................................................................................................TTCTGTGGTTGGTTGTGGTAC............................................................................................................................................................2181.1390801
.................................................................................................................................AGTAAATCTCTAGAAAATGTT............................................................................................................................21131.081401400
.....................................................................................................................................AATCTCTAGAAAATGTTCGTGT.......................................................................................................................22131.001301300
...............................................................................................................................................................................................................................TTCCATATCGGCAATCAGGCGT.............................22131.001301102
....................................................................................................................................................................................................................................TATCGGCAATCAGGCGTTCAT.........................21130.921201200
..................................................................................................................................................................................................................................................CGTTCATCACAGTATATTGTC...........21120.7590900
..............................................................................................................................................................................................................................ATTCCATATCGGCAATCAGG................................20130.6990900
..................................................................................................TCTGTGGTTGGTTGTGGTACT...........................................................................................................................................................2180.6350500
.............................................................................................................................................................................................................................................TCAGGCGTTCATCACAGTAT.................20130.6280800
...........................................................................................................................................................................................................................................AATCAGGCGTTCATCACAGTA..................21130.5470502
.................................................................................................TTCTGTGGTTGGTTGTGGTACT...........................................................................................................................................................2280.5040400
....................................................................................................................................................................................................................................TATCGGCAATCAGGCGTTCATC........................22130.4660501
....................................................................................................................................AAATCTCTAGAAAATGTTCGTGTA......................................................................................................................24130.3850500
.........................................................................................................................................................................................................................................GCAATCAGGCGTTCATCACAGT...................22130.3850500
.................................................................................................TTCTGTGGTTGGTTGTGGTA.............................................................................................................................................................2080.3830300
....................................................................................................................................AAATCTCTAGAAAATGTTCGTG........................................................................................................................22130.3140400
............................................................................................................................................................................................................................................ATCAGGCGTTCATCACAGTATT................22130.3140400
.....................................................................................................................................AATCTCTAGAAAATGTTCGTGTA......................................................................................................................23130.3140301
.....................................................................................................................................................................................................................................ATCGGCAATCAGGCGTTCATC........................21130.3140400
.................................................................................................................................................................................................................................CCATATCGGCAATCAGGCGTT............................21130.3140301
................................................................................................ATTCTGTGGTTGGTTGTGGTA.............................................................................................................................................................2180.2520200
.................................................................................ATGATTTGGATCCTTATTCTGT...........................................................................................................................................................................2240.2510100
....................................................................................................................................AAATCTCTAGAAAATGTTCGTTT.......................................................................................................................23130.2330300
..................................................................................................................................................................................................................................................CGTTCATCACAGTATATTGT............20130.2330300
........................................................................................................................................CTCTAGAAAATGTTCGTGGGC-....................................................................................................................21130.2330300
...............................................................................................................................................................................................................................TTCCATATCGGCAATCAGGCG..............................21130.2330300
............................................................................................................................................................................................................................................ATCAGGCGTTCATCACAGTA..................20130.2330300
..............................................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCGT.............................23130.2330300
..............................................................................................................................................................................................................................................CAGGCGTTCATCACAGTATA................20130.2330201
.................................................................................................................................AGTAAATCTCTAGAAAATGTTT...........................................................................................................................22130.2330300
..............................................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCT..............................22130.2330300
....................................................................................................................................AAATCTCTAGAAAATGTTCGTGTC......................................................................................................................24130.1520200
..............................................................................................................................................................................................................................ATTCCATATCGGCAATCAGGTT..............................22130.1520200
..........................................................................................................................................................................................................................................CAATCAGGCGTTCATCACAGTT..................22130.1520200
...............................................................................................................................................................................................................................TTCCATATCGGCAATCAGGTA..............................21130.1520200
.............................................................................................................................................................................................................................GATTCCATATCGGCAATCAGG................................21130.1520200
................................................................................................................................................................................................................................TCCATATCGGCAATCAGGCGTTA...........................23130.1520200
...................................................................................................................................TAAATCTCTAGAAAATGTTCGTTT.......................................................................................................................24130.1520200
....................................................................................................................................AAATCTCTAGAAAATGTTCGC.........................................................................................................................21130.1520200
..............................................................................................................................................................................................................................................CAGGCGTTCATCACAGTATATT..............22130.1520200
................................................................................................................................................................................................................................TCCATATCGGCAATCAGGCGTA............................22130.1520200
...............................................................................................................................................................................................................................................AGGCGTTCATCACAGTATATTG.............22130.1520200
..................................................................................................................................................................TACCATACGCAAGTATAACG............................................................................................20130.1520200
...........................................................................................................................................................................................................................................AATCAGGCGTTCATCACAGT...................20130.1520200
....................................................................................................................................AAATCTCTAGAAAATGTTCGTA........................................................................................................................22130.1520200
.........................................................................................................................TTGCAGTAAGTAAATCTCTAG....................................................................................................................................21130.1521100
...............................................................................................................................................................................................................................TTCCATATCGGCAATCAGGCGTA............................23130.1520200
....................................................................................................................................AAATCTCTAGAAAATGTTCGTTA.......................................................................................................................23130.1520200
..........................................................................................................................................................................................................................................CAATCAGGCGTTCATCACAG....................20130.1520200
..........................................................................................................................................................................................................................................CAATCAGGCGTTCATCACAGTA..................22130.1520200
.............................................................................................CTTATTCTGTGGTTGGTTGTGTA..............................................................................................................................................................2370.1410100
...............................................GCGGTGTTTGACAATGACGGC..............................................................................................................................................................................................................2170.1410100
.................................................................................................TTCTGTGGTTGGTTGTGGTAT............................................................................................................................................................2180.1310100
.................................................................................................TTCTGTGGTTGGTTGTGGTT.............................................................................................................................................................2080.1310100
...................................................................................................CTGTGGTTGGTTGTGGTACT...........................................................................................................................................................2080.1310100
...............................................................................................................................................................................................................................................AGGCGTTCATCACAGTATATTGTC...........24120.0810100
....................................................................................................................................AAATCTCTAGAAAATGTTCGTAT.......................................................................................................................23130.0810100
.............................................................................................................................................................................................................................GATTCCATATCGGCAATCAGGT...............................22130.0810100
..................................................................................................................................................................TACCATACGCAAGTATAACGC...........................................................................................21130.0810100
.............................................................................................................................................................................................................................................TCAGGCGTTCATCACAGTATAA...............22130.0810100
..............................................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCGTAA...........................25130.0810100
...................................................................................................................................................................................................................................ATATCGGCAATCAGGCGTT............................19130.0811000
.............................................................................................................................................................................................................................................TCAGGCGTTCATCACAGTA..................19130.0810100
.....................................................................................................................................AATCTCTAGAAAATGTTCGTGC.......................................................................................................................22130.0810100
.................................................................................................................................AGTAAATCTCTAGAAAATGTTA...........................................................................................................................22130.0810100
........................................................................................................................................CTCTAGAAAATGTTCGTGGTA-....................................................................................................................21130.0810100
....................................................................................................................................AAATCTCTAGAAAATGTTCGTC........................................................................................................................22130.0810100
..............................................................................................................................GTAAGTAAATCTCTAGAAAAT...............................................................................................................................21130.0810100
.....................................................................................................................................AATCTCTAGAAAATGTTCGTGA.......................................................................................................................22130.0810100
.........................................................................................................................................................................................................................................GCAATCAGGCGTTCATCACAGTA..................23130.0810100
....................................................................................................................................AAATCTCTAGAAAATGTTCGTGTT......................................................................................................................24130.0810100
....................................................................................................................................AAATCTCTAGAAAATGTTCGTGGTA-....................................................................................................................25130.0810100
................................................................................................................................................................................................................................TCCATATCGGCAATCAGGCGTC............................22130.0810100
...................................................................................................................................TAAATCTCTAGAAAATGTTC...........................................................................................................................20130.0810100
.......................................................................................................................................TCTCTAGAAAATGTTCGTG........................................................................................................................19130.0810100
...................................................................................................................................TAAATCTCTAGAAAATGTTCGTA........................................................................................................................23130.0810100
................................................................................................................................................................................................................................TCCATATCGGCAATCAGGCT..............................20130.0810100
..............................................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCGTA............................24130.0810100
...............................................................................................................................................................................................................................................AGGCGTTCATCACAGTATATTAA............23130.0810001
.....................................................................................................................................AATCTCTAGAAAATGTTCGTGTT......................................................................................................................23130.0810100
................................................................................................................................................................................................................................TCCATATCGGCAATCAGGCGTT............................22130.0810100
..........................................................................................................................................CTAGAAAATGTTCGTGGGC-....................................................................................................................19130.0810100
.............................................................................................................................................................................................................................................TCAGGCGTTCATCACAGTATT................21130.0810100
...........................................................................................................................................................................................................................................AATCAGGCGTTCATCACAGTAT.................22130.0810100
.............................................................................................................................AGTAAGTAAATCTCTAGAAA.................................................................................................................................20130.0810001
.......................................................................................................................................TCTCTAGAAAATGTTCGTGGA......................................................................................................................21130.0810100
...................................................................................................................................TAAATCTCTAGAAAATGTTCGTGG.......................................................................................................................24130.0810100
...............................................................................................................................................................................................................................TTCCATATCGGCAATCAGGCGTCT...........................24130.0810100
................................................................................................................................AAGTAAATCTCTAGAAAATG..............................................................................................................................20130.0810100
..............................................................................................................................................................................................................................ATTCCATATCGGCAATCAGGTC..............................22130.0810100
.................................................................................................................................................................................................................................................GCGTTCATCACAGTATATTGT............21130.0810100
...............................................................................................................................................................................................................................TTCCATATCGGCAATCAGGT...............................20130.0810100
.................................................................................................................................................................................................................................CCATATCGGCAATCAGGCGTTC...........................22130.0810100
...............................................................................................................................................................................................................................................AGGCGTTCATCACAGTATAT...............20130.0810100
...................................................................................................................................TAAATCTCTAGAAAATGTTCGT.........................................................................................................................22130.0810100
..................................................................................................................................................................................................................................CATATCGGCAATCAGGCGTTCT..........................22130.0810100
...............................................................................................................................................................................................................................TTCCATATCGGCAATCAGGCGC.............................22130.0810100
....................................................................................................................................AAATCTCTAGAAAATGTTCGTATT......................................................................................................................24130.0810100
............................................................................................................................................................................................................................TGATTCCATATCGGCAAT....................................18130.0810100
....................................................................................................................................AAATCTCTAGAAAATGTTCGTGTAA-....................................................................................................................25130.0810100
....................................................................................................................................AAATCTCTAGAAAATGTTCGTTC.......................................................................................................................23130.0810100
......................................................................................................................................ATCTCTAGAAAATGTTCGTGGT......................................................................................................................22130.0810100
.................................................................................................................................AGTAAATCTCTAGAAAATGT.............................................................................................................................20130.0810100
..............................................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCG..............................22130.0810100
....................................................................................................................................................................................................................................TATCGGCAATCAGGCGTTCATT........................22130.0810100
.................................................................................................................................AGTAAATCTCTAGAAAATG..............................................................................................................................19130.0810001
..................................................................................................................................................................................................................................................CGTTCATCACAGTATATTG.............19130.0810001
..............................................................................................................................................................................................................................ATTCCATATCGGCAATCAGGCGA.............................23130.0810100
..................................................................................................................................GTAAATCTCTAGAAAATGTTC...........................................................................................................................21130.0810100
................................................................................................................................................................................................................................................GGCGTTCATCACAGTATATTG.............21130.0810100
....................................................................................................................................AAATCTCTAGAAAATGTTCGTGTAT-....................................................................................................................25130.0810100
.................................................................................................................................................................................................................................CCATATCGGCAATCAGGCGTTT...........................22130.0810100
.........................................................................................................................................................................................................................................GCAATCAGGCGTTCATCACA.....................20130.0810100
.......................................................................................................................................TCTCTAGAAAATGTTCGTGGTA-....................................................................................................................22130.0810100
.........................................................................................................................................TCTAGAAAATGTTCGTGGGC-....................................................................................................................20130.0810100
............................................................................................................................................................................................................................TGATTCCATATCGGCAATCAGT................................22130.0810100
............................................................................................................................................................................................................................................ATCAGGCGTTCATCACAGTATC................22130.0810100
......................................................................................................................................ATCTCTAGAAAATGTTCGTG........................................................................................................................20130.0810100
......................................................................................................................................................................................................................................TCGGCAATCAGGCGTTCATCA.......................21130.0811000
.....................................................................................................................................AATCTCTAGAAAATGTTCGT.........................................................................................................................20130.0811000
....................................................................................................................................AAATCTCTAGAAAATGTTCGTTTT......................................................................................................................24130.0810100
....................................................................................................................................AAATCTCTAGAAAATGTTCGTGTTT-....................................................................................................................25140.0710100
droSim2
CGAA-TGACCAA-GAGCTGCTTAAGGATACGAATCAGTTCAACTCTGGCGGTGTTTGACAATGACGGCGGTCCGGCTTCTGATGATTTGGATCCATATTCTGTGGTTGGTTGTGGTACTTATTGCAGTAAGTAAATCCCTCGAAAATGTTCGCGGGCTTGCGTACCATACGCAAGTATAAAGCTAAAGTATAAAGGCAAGTATAAG--------------------------GGCAATCAGGCGTTCATCACAGTATATTGTCGCTATCCAACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................TGATTTGGATCCATATTCTGT...........................................................................................................................................................................21220.5041090022400000006000
..................................................................................TGATTTGGATCCATATTCTGTG..........................................................................................................................................................................22212.0024030080000000013000
..................................................................................TGATTTGGATCCATATTCTG............................................................................................................................................................................20211.5023040014200000003000
..................................................................................TGATTTGGATCCATATTCT.............................................................................................................................................................................1925.0010000010000000000000
..................................................................................TGATTTGGATCCATATTC..............................................................................................................................................................................1823.50700006000000001000
.....................................................................GTCCGGCTTCTGATGATTTGG........................................................................................................................................................................................2112.00200000002000000000
....................................................................................ATTTGGATCCATATTCTGTG..........................................................................................................................................................................2021.50300000000000003000
..................................................................................TGATTTGGATCCATATTCTGTGT.........................................................................................................................................................................2321.50301000000000002000
.....................................................................................................................................................................................................................................................TCATCACAGTATATTGTCGCTA.......2211.00100000010000000000
.............................................TGGCGGTGTTTGACAATGACGGCA.............................................................................................................................................................................................................2411.00100000000000001000
..................................................................................TGATTTGGATCCATATTCTGC...........................................................................................................................................................................2121.00202000000000000000
.............................................................................................................................................................................................................................................................GTATATTGTCGCTATCCAACA2111.00100000001000000000
.....................TAAGGATACGAATCAGTTCAACTCT....................................................................................................................................................................................................................................2511.00100000001000000000
..................................................................................TGATTTGGATCCATATTCTGTT..........................................................................................................................................................................2221.00200000000000002000
..................................................................................TGATTTGGATCCATATTCTGG...........................................................................................................................................................................2121.00202000000000000000
.................................TCAGTTCAACTCTGGCGGTGTT...........................................................................................................................................................................................................................2211.00100000010000000000
..................................................................GCGGTCCGGCTTCTGATGATT...........................................................................................................................................................................................2111.00110000000000000000
.....................................................TTTGACAATGACGGCGGTCCGGCT.....................................................................................................................................................................................................2411.00100000001000000000
................................................................................................................TGGTACTTATTGCAGTAAG...............................................................................................................................................1920.50100001000000000000
...................................................................................GATTTGGATCCATATTCTGTG..........................................................................................................................................................................2120.50100000000000001000
..................................................................................TGATTTGGATCCATATTCTGTGC.........................................................................................................................................................................2320.50101000000000000000
...................................................................................GATTTGGATCCATATTCTG............................................................................................................................................................................1920.50101000000000000000
..................................................................................TGATTTGGATCCATATTCTGTGA.........................................................................................................................................................................2320.50100000000000001000
dm3
CGAA-TGACCAA-GAGCTGCTTAAGGATTCGAATCAATTCAACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........CAA-GAGCTGCTTAAGGATTCGAATC...............................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGACCAA-GAGCTGCTTAAGGATT.....................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCTTAAGGATTCGAATCAATTCAAC.......................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCTTAAGGATTCGAATCAATTCAACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GATTCGAATCAATTCAACTT.....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGACCAA-GAGCTGCTTAAGGATTCGAA.................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACCAA-GAGCTGCTTAAGGATT.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........AA-GAGCTGCTTAAGGATTCGA..................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................GCTTAAGGATTCGAATCAATTC..........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGAA-TCCCCAA-GAACTGCTTCAGCATACGCAGGAGTTCAACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
CGAG-TCCCCAA-GAACTGCTCCAAGATACAGAGGAGTTCAACTTTAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
CGAA-CCCTCAA-GAGTTGCTAGAAGCAACGGATGAGTTCATCTTTAAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
CGAA-CCCCCAA-GACATGCTCAAGGATACGCAAGAGTTCAACTTCAACGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
CGAA-TCCCCAG-GAATTGCTCCAGGACACCGAAGAGTTCAACTTTAACAGTT-AC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAATCAGG--------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TGAA-CCCCCAA-CAAATGCTCCAGGATACTCAGGAGTTTAACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGAG-CCTCCAG-CAAATGCTCCAGGATACACATGAGTTCAACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AACAGCCCACAG-CAGATGCTCCAGGACACGCAGGAGTTCAACTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
CGAC-AGCCGAG-GATTTGTTGTTGGCAACGAATGAGTTCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ATGT-CCGTGGTGGACATGCTCAAGGACACCGATGAGTTCAACTTTGCG-AAATCCGGAAACGACG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droWil2
AATC-TGCCCAG-GAAATGCTTACCGATACGAATGCATTCACCTTTCAAACTGTCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.....TGCCCAG-GAAATGCTTACCGATACGAAA................................................................................................................................................................................................................................................2811.00101000
droMoj3
CGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAAATTGTCACTCACCAACASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/17/2015 at 10:59 PM