dse_901

Name	Class	Family	Strand
(CAA)n	Simple_repeat	Simple_repeat	+
TART_DV	LINE	Jockey	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CAACAACAATAAGCACAGAGGCAACCATACCAACAATTGCACCATCAGGATTAGCAACAACAATAAGCACCAGCACAACAACAATAGCAACAAGTGCAACACAACAACCACCAACAGCAACAACAACAACAACAAGAACAACAACCACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTTAACAGATGATGAGCAGCAACAGGAACCGGAAACGGAAACGGACAACATTGGCAAC ************************************************......................((((.................))))........................................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	M054 female body	V114 embryo	V115 head
....................................................................................................................................................................................................................CAACAGGAACCGGAAACGGAAACGGA.............	26	0	1	1.00	1	1	0	0	0
........................................................................................................................................................................CTAGCCTCACACCTAAAAC................................................................	19	2	2	0.50	1	0	1	0	0
......................................................................................................................................................................................................................ACAGGAACCGGAAACGGAC..................	19	1	3	0.33	1	0	0	1	0
..........................................................................................................................ACAACAACAACAAGAACA...............................................................................................................	18	0	19	0.05	1	0	0	1	0
................................................................................................................AACAGCAACAACAACAAC.........................................................................................................................	18	0	20	0.05	1	0	0	0	1

GTTGTTGTTATTCGTGTCTCCGTTGGTATGGTTGTTAACGTGGTAGTCCTAATCGTTGTTGTTATTCGTGGTCGTGTTGTTGTTATCGTTGTTCACGTTGTGTTGTTGGTGGTTGTCGTTGTTGTTGTTGTTGTTCTTGTTGTTGGTGATCGTCTTGTCTATCGTTAGGGTCGGGGTGTGGATTTTGTAAAGTAAATTGTCTACTACTCGTCGTTGTCCTTGGCCTTTGCCTTTGCCTGTTGTAACCGTTG ************************************************......................((((.................))))........................................................................................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V115 head	M054 female body	V113 male body	V114 embryo
.........................................................................................................TTGGTGGTTGTCGTTGTTGTC.............................................................................................................................	21	1	7	0.29	2	2	0	0	0
........................................................................................................................................................................GATCGGAGTGTGGATTTT.................................................................	18	2	6	0.17	1	0	1	0	0
.........................................................................................................TTGGTGGTTGTCGTTGTTGTCG............................................................................................................................	22	1	6	0.17	1	1	0	0	0
.........................................................................................................TTGGTGGTTGTTGTTGTTGTTG............................................................................................................................	22	1	11	0.09	1	0	0	1	0
................................................................................................................................................................GTCGTTAGGGTTGGGGTG.........................................................................	18	2	15	0.07	1	0	1	0	0
........................GGTATGGTTTTTAAAATGGT...............................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	1
............................................................................................................................................................................................AAAGTAAATTGTCGACAA.............................................	18	2	20	0.05	1	1	0	0	0
............CCCGTCTCCGTTTGTATGG............................................................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_17:545998-546248 +	dse_901	CAACAACAAT------AAGCACAGAG------------GCAA---------CCA---TACCAACAAT------------------------------------------------------------------------------------------------------TGCACCATCAGGATTAGCAACAACAATAAGCAC---CAGCACAACAACA---AT------AGCAAC------AA---------------------------------------------------------------------------------------------------------------------------GTGCAACAC--AACAACCACCAACAGCAACAACAACAACAACA------A-------------------------------------------------------------------------------------------GAACAACAACCACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTTAACAGATGA-------------------------------------TGAGCAGCAACA---------GGAACCGGA-----AACGGA------AACGGACA----ACATTGGCAAC--
droSim2	x:15819410-15819669 +		CAACAACAAT------AAGCACAGAG------------GCAA---------CCA---TACCAACAAT------------------------------------------------------------------------------------------------------TGCACCATCAGGATTAGCAACAACAATAAGCAC---CAGCACAACAACA---AT------AGCAAC------AA---------------------------------------T---A---GCAACA---------------------------------------------------------------------AGTGCAACAC--AACAACCACCAACAGCAACAACAACAACAACA------A-------------------------------------------------------------------------------------------GAACAACAACCACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTTAACAGATGA-------------------------------------TGAGCAGCAACG---------GGAACCGGA-----AACGGA------AACGGACA----ACATTGGCAAC--
dm3	chrX:16717683-16717939 +		CAACAACAAT------AAGCACAGAG------------GCAA---------CCA---TAACAACAAT------------------------------------------------------------------------------------------------------TGCACCATCAGGATTAGCAACAACAATAAGCAC---CAGCACAACAACA---AT------AGCAAC------AA---------------------------------------------------------------------------------------------------------------------------GTGCAACAC--AACAACCACCAACAGCAACAACAACAACAACAGCAACCA-------------------------------------------------------------------------------------------GAACAACAACCACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTTAACAGATGA-------------------------------------TGAGCAGCAACA---------GGAACCGGA-----AACGGA------AACGGACA----ACATTGGCAAT--
droEre2	scaffold_4690:7074557-7074813 +	der_392	CAACAACCAA------AAGCACAGAG------------GCAA---------CCA---TAACAACAAT------------------------------------------------------------------------------------------------------TGCACCACCAGGATTAGCAACAACAATAAGCAC---CAGCACAACAACA---ATAA---G---AAC------AA---------------------------------------CAACA---GCAACA---------------------------------------------------------------------AGCGAAACAA--AACAACCACCAACAGCAATAACA------ACA------A-------------------------------------------------------------------------------------------GAACAACAAACACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTCAACAGATGA-------------------------------------TGAGCAGCAACA---------GGAACCGGA-----AACGGA------AACGACCA----ACATTGGCAAC--
droYak3	X:15323305-15323579 +	dya_1435	CAAGAACAAC------AAGCACAGAG------------GCAA---------CCA---TAACAACAAT------------------------------------------------------------------------------------------------------TGCACCATCAGGATTAGCAACCACAATAAGCAC---CAGCACAACAACA---ATAG---C---AGC------AG---------------------------------------CAACA---ACAATA---------------------------------------------------------------------AGTGCAACAC--AACAACCACCACCAACAACAACAACAACAACAAGAACAA------------------------------------CA-------------------------------------------------------ACAACAACCACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTCAACAGATGA-------------------------------------TGAGCAGCAACA---------GGAACCGGA-----AACGGAACCGAAAACGAACA----ACATTGGCAAC--
droEug1	scf7180000409631:95031-95262 +		AAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAA---CAACAACAAC---AAC------------------------------------------------------------------------------------------------AACAACAACAACAACAACAACAACAACAACAAC---AACAACAACAACA---ACAACAACAACAACAACAACAA----------------------CAA--------------C---AA---CAA-----------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAACAACAACAACAACAACAA------------------------CAACAACAAC------------------------------------------------------------------------AACAACAACAACAACAACAACAACAACAACAACAACAA-----------------------------------------------------CA----ACAACAACAAC--
droBia1	scf7180000298389:212874-213118 -		CAGCAACAGC------AGCAACAACA------------ACAG---------CAG---CAGCAACAGC------------------------------------------------------------------------------------------------------AGCAGCAGCAACAACAGCAACAGCAGCAGCA---------GCAACAACA---A------C---A------------------CACCCAACGGTGCGCAG-----------CAGC---AGCAGCAAC---------ATCACCAGCAGCAACATCATCAGCAGCAGC------AGCAG------CA------GCATCA--------------------------------------------------C------CA------------------------ACAGCAACG------------------GGTTGTTGCCAGCAGCAACCAGCAACAGC------------------------------------------------------------------------AGCAGCTGCAGCAGCAACAGCAGCAGCAGCAGCAACAG-----------------------------------------------------CA----GCAGCAGCAGC--
droTak1	scf7180000415872:1087987-1088309 +		CAACAACAAC------AACCACAGAG------------GCAA---------CCA---TTAAAACAACAGC---AGCAACAGCAACTGAAATTGCACTCGCCGTTGCAACAGCAACAGATATTGCAAGTAGCTCAGCACCACCTTTACCACCGGCAACAGCAACAACAATAGCACCATCTGCAACTTCAACAACAATTAGCACCACCAGCACAACAACA---AC------AGCAAC---------------------------------------------------------AACA---------------------------------------------------------------------AGTACAACAC--AACAACCACCAACAGCAACAACA-------------------------------------------------------------------------------------------------------------------------AGCAGTACAGATAGCAATCCCAGCCCCACACTTAAAACATTTCATTTAACAGA----------------------------------------TGAGCAGCAACA---------GGACGAGGA-----------------AACGGAGA----GCATTGGCAAC--
droEle1	scf7180000491047:337833-338076 -		CAGCAGCAGC------AAGAGCAACA------------GCAA---------CAA---CAGCAGCAAG------------------------------------------------------------------------------------------------------AGCAACAGCAACAACAGCAGCAACAGCAGCAGC---A---GCAGCAACAACAG------C---AGC------AA----------------------CAA--------------C---AA---CAGCAGACACAACAG---CAG---------------CAACAAC------AACAGCAGCAGCA------GCAACAA---CAGCAG-----------------------------------CAGCCG------CA------G------------CAACAACAACCACAGCCCGTG---CAG------------------------CAAA---------------------------------------------------------------TCCATCAACCGCAACA---------ACAGCAA----------------------------CAGCA---------GCAACATGC-----GCTGCA------AATG--CA----ACAGCCACAAC--
droRho1	scf7180000777200:116152-116386 -		CTACTACTAC------AACAACTACT------------ACTA---------CAA---CAACTACTAC------------------------------------------------------------------------------------------------------TACAACAACCACTACTACAACAACAACAACCAC---TACTACAACAACA---A------C---AAC------CA----------------------CTA--------------C---TACAACAAC---------AA---CCACT---------ACTACAACAAC------AACAA------CC------ACTACA------ACAACA-----------------------A---------CAACCA---------------------------CTACTACTACAACAACAACCACTACTA------------------------CAACAACAAC------------------------------------------------------------------------AACCACCACTACTACAACAACAACAACCACTACAACAA-----------------------------------------------------CA----ACCACTACAAC--
droFic1	scf7180000453829:1093073-1093313 +		CAGCAACAGC------AACAGCAGCA------------A------------CTACAACAACAACAGC------------------------------------------------------------------------------------------------------AGCAACAGCAGCAGCAACAACAGCAACAGCAGC---AACTACAACAACA---A------C---AGC------AG----------------------CAG--------------C---AG---CAGCAACTACAACAA---CAA---------------CAGCACCAAATACAACAA------CA------------------GCAGCA-----------------------A---------CAGACACTGCAGCA---------------------------ACAGCAACAACAGCAGCAT------------------------CAGCAACTACAGC-----------------------------AAT-------------------------------------TTCAGCAGAAGCAACAACAGCAATTGCAGCAGGAGCAA-----------------------------------------------------CA----GCAGCAGCAAC--
droKik1	scf7180000301542:244516-244823 -		CAACAACAG---------------AG------------GCAACCTCAGTAGCAG---CAGTAATTGC---AACAACATCAG---------CAACAGTCGCCGCAGCAGCAGCAAC---TATTGAAACT------------------------------TCAACAACAATTGCACC------------AACAACAATTAGCAC---CAGCACAACAACA---ACAA---TAGCAAC------AA------------------------------------------CA---ACA------------------------------------------------ACT---------------------A---CACCAC--CACCACCA---CCA------------------------------------------------------CCACCACCAATAGCAACAA-------------------------------------------CAACAACAACAACAAGCAGAACAAATAGCAATCCCAGTTCCACACTTAAAACATTTACTTCAACAGA----------------------------------------TGAGCAGCAACA---------GGAGCAGGATCATGATCAGG------AACGAGGAGGAAATATTGGTAAC--
droAna3	scaffold_13117:3549904-3550142 -		CAGCAGCAGT------AACAGTAGCA------------A------------CAGCAACAACAACAGC------------------------------------------------------------------------------------------------------AACAACAGCAGCAGCAACAACAACAACAGTAGC---AGCAGCAACAACA---A------TAGTAGC------AATAACAACACACCAAACGGTGC--------------------------------------ACAA---CAA---------------CAACAGC------AGCAA------CA------ACAACAA---CATCAG-----------------------------------CAACAT------CA------A------------CAACAACAACAACAACAAATACATCATCAAAGGATTGCAA----------------------------------------------------------------------------------------------------GCAGCAGCAA--CCAGCAGCAGCTGCAGCAA-----------------------------------------------------CA----ACAGCAGCAGC--
droBip1	scf7180000396362:640486-640747 +		CAACAACAAA------AAATGGAACA------------ACAA---------CAA---GAACAACAAG------------------------------------------------------------------------------------------------------AACAACAACAAAAATTACAACAACAACAAGAA------GAACAACAACA---AC------AACAAC------AA----------------------GAACAACAAAATTACAAC---AA---CAACAAGAAC---AACAAGAACA---------------ACAA-----------------------------------------------------------------------------CAAAAATTACAACAACAACAAGAAGAACAACAACAACAACA-----------------------------------------------------------------------------------------ACAACAAAATTACAACAAAATTACAACAACAAGAAGAAGAACAACAACAACAACAACAACAACAACAACAAGAA-----------------------------------------------------CA----ACAACAACAAC--
dp5	XR_group6:8816307-8816555 -		CAACAACAAC------AAACGCAACA------------CCAA---------AAA---CAACAACAGC------------------------------------------------------------------------------------------------------ACCTAAAACAACAACAACATCAACAACAACAAC---AAATCA---AACAATAA------C---ACC------AA----------------------AAA--------------C---AA---CACAAACAGCAACAC---CAA---------------CAACACC------AACAATATCACCA------ACAACTA---AACCAA-----------------------------------CATCCA------CA------A------------CAATGCCACAAACAGAAATAACACCAA------------------------CAACAACAATAAT---------------------------------------------------------------------ACCAACAACAATAACAGCACCAACAACAACACCAACAA-----------------------------------------------------CA----ACAACATCAACAA
droPer2	scaffold_0:8271562-8271792 -		CAACAGCAGC------AGCAAATGCA------------A------------CAGCAGCAGCAA---A------------------------------------------------------------------------------------------------------TGCAGCAACAGCAGCAACAGCAACAACAGCAGC---AAATGCAGCAGCA---ACAGCAACAGCAG---------------------------------------------------------CAAATGCAGCAACAG---CAG---------------CAGCAGC------AGCAA------CAGCAGCAACAACA------GCAACA-----------ACA---------------------GCAA---------------------------CAACAGCAGCAACAACAGCCGCAACAA------------------------CAGCAACAAC----------------------------------------------------------------------------------------------------------------AGCAGCAACAGCGCTCACAGCATCAGCA-----AACGCA------GACGA-------------ACAGC--
droWil2	scf2_1100000004515:1901203-1901452 -		CAACAACAAC------AACAATAACA------------ACAA---------CAA---TAACAACAAT------------------------------------------------------------------------------------------------------TACAACAACAACAACAACAACAATAACAACAAC---A---ATAACAACAATAA------C---AAC------AA----------------------CAA--------------C---AA---CAACAACAACAACAA---CAA---------------CAACAAC------AACAACAACAACA------ACAACAA---CAACAACA-----------------------------------ACAA------CA------A------------CAACAACAACAACAACAACTACGACAA------------------------CTACAACAACAAC---------------------------------------------------------AAT---------TACAACAACAACAACAACAACCACAACAACAACAACAA-----------------------------------------------------CA----ACAACAACAAC--
droVir3	scaffold_12928:1184199-1184427 +		TAACAGCAGC------AGCAGCAGCA------------ACAT---------TAA---CAGCAACAAT------------------------------------------------------------------------------------------------------AACAGCAACAGCAACAACAACAACAGCAGCAGC---AGCAATAGCGGCA---A------C---AG------------------------------------------------C---AGCAACAACAATAGCAATAA---CAA------CAACACCAACAGCAAC------AGCAA------CA------GCAACA--------------------------------------------------A---------------------------TAATAATAATAGCAATAACAACAACAC------------------------CAATAACAAT------------------------------------------------------------------------AATAATAATAATAGCAATAACAACAACAACAACAACAA-----------------------------------------------------CA----ACAACAGCAAC--
droMoj3	scaffold_6473:12294243-12294489 -		CAACAACAAC------AAGAACTGCA------------ACAA---------CAA---CAACAACAAC------------------------------------------------------------------------------------------------------AACAGCCACAACAGCAACAACAACAATAGCAAC---CACAGCAACAACA---AC------AACAAC------AA------------------------------------------------CAACAACAGCAATAG---CAA------CAACAGCAACAACAGC------AACAA------CA------ACAACA------ACAACA-----------------------------------ACAA------CG------G------------TAACAACAACAATAGCAACCACAGCAA------------------------CAGCAACAACACA----------------------------------------------------------GTT--------TACAACGACAAGAACAGCATCAACAACAACAACAACAA-----------------------------------------------------CA----GCAATAGCTAC--
droGri2	scaffold_15203:1310259-1310493 -		CAACAACAAC------AGCAACAACA------------ACAG---------CAA---CAACAACAGC------------------------------------------------------------------------------------------------------AACAACACCAACAATATCAACATCAACAACAAC---AGCACAAACAACA---G------C---AAC------AA----------------------CAA--------------C---TGCAACAAC---------AA---GAGCA---------GCAGCAAGAGC------AACAA------CA------ACATCA------ACAACA-----------ACA------------------------G------CA------A------------CAACAACAGCAACAACAACTGCAACAA------------------------CAAGAGCAAC------------------------------------------------------------------------AGCAAGAGCAACAACAAGAGCAACAGCAAGAGCAACAA-----------------------------------------------------CA----ACAGCGACAAC--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

CAACAACAAT------AAGCACAGAG------------GCAA---------CCA---TACCAACAAT------------------------------------------------------------------------------------------------------TGCACCATCAGGATTAGCAACAACAATAAGCAC---CAGCACAACAACA---AT------AGCAAC------AA---------------------------------------------------------------------------------------------------------------------------GTGCAACAC--AACAACCACCAACAGCAACAACAACAACAACA------A-------------------------------------------------------------------------------------------GAACAACAACCACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTTAACAGATGA-------------------------------------TGAGCAGCAACA---------GGAACCGGA-----AACGGA------AACGGACA----ACATTGGCAAC--	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA---------GGAACCGGA-----AACGGA------AACGGA...................	26	1	1.00	1	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------GGAACCGGA-----AACGGA------C........................	19	3	0.33	1	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACA------A-------------------------------------------------------------------------------------------GAACA..............................................................................................................................................................................	18	19	0.05	1	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACAAC.........................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1

droSim2

CAACAACAAT------AAGCACAGAG------------GCAA---------CCA---TACCAACAAT------------------------------------------------------------------------------------------------------TGCACCATCAGGATTAGCAACAACAATAAGCAC---CAGCACAACAACA---AT------AGCAAC------AA---------------------------------------T---A---GCAACA---------------------------------------------------------------------AGTGCAACAC--AACAACCACCAACAGCAACAACAACAACAACA------A-------------------------------------------------------------------------------------------GAACAACAACCACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTTAACAGATGA-------------------------------------TGAGCAGCAACG---------GGAACCGGA-----AACGGA------AACGGACA----ACATTGGCAAC--

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

dm3

CAACAACAAT------AAGCACAGAG------------GCAA---------CCA---TAACAACAAT------------------------------------------------------------------------------------------------------TGCACCATCAGGATTAGCAACAACAATAAGCAC---CAGCACAACAACA---AT------AGCAAC------AA---------------------------------------------------------------------------------------------------------------------------GTGCAACAC--AACAACCACCAACAGCAACAACAACAACAACAGCAACCA-------------------------------------------------------------------------------------------GAACAACAACCACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTTAACAGATGA-------------------------------------TGAGCAGCAACA---------GGAACCGGA-----AACGGA------AACGGACA----ACATTGGCAAT--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACA----ACATTGGCA....	15	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16
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droEre2

CAACAACCAA------AAGCACAGAG------------GCAA---------CCA---TAACAACAAT------------------------------------------------------------------------------------------------------TGCACCACCAGGATTAGCAACAACAATAAGCAC---CAGCACAACAACA---ATAA---G---AAC------AA---------------------------------------CAACA---GCAACA---------------------------------------------------------------------AGCGAAACAA--AACAACCACCAACAGCAATAACA------ACA------A-------------------------------------------------------------------------------------------GAACAACAAACACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTCAACAGATGA-------------------------------------TGAGCAGCAACA---------GGAACCGGA-----AACGGA------AACGACCA----ACATTGGCAAC--	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.AACAACCAA------AAGCACAGAG------------GCAA---------CC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGATGA-------------------------------------TGAGCAGCAAC.............................................................	20	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACA---------GGAACCGGA-----AA...................................	21	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---------GGAACCGGA-----AACGGA------AACG.....................	23	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGATGA-------------------------------------TGAGCAGC................................................................	18	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................AC------AA---------------------------------------CAACA---GCAACA---------------------------------------------------------------------AGCGAAAC.........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GGAACCGGA-----AACGGA------AAC......................	19	2	0.50	1	0	0	0	0	0	1	0

droYak3

CAAGAACAAC------AAGCACAGAG------------GCAA---------CCA---TAACAACAAT------------------------------------------------------------------------------------------------------TGCACCATCAGGATTAGCAACCACAATAAGCAC---CAGCACAACAACA---ATAG---C---AGC------AG---------------------------------------CAACA---ACAATA---------------------------------------------------------------------AGTGCAACAC--AACAACCACCACCAACAACAACAACAACAACAAGAACAA------------------------------------CA-------------------------------------------------------ACAACAACCACTAGCAGAACAGATAGCAATCCCAGCCCCACACCTAAAACATTTCATTCAACAGATGA-------------------------------------TGAGCAGCAACA---------GGAACCGGA-----AACGGAACCGAAAACGAACA----ACATTGGCAAC--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---------GGAACCGGA-----AACGGA...............................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA---------GGAACCGGA-----AACGGAA..............................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAACAGATAGCAATCCC................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACAGATGA-------------------------------------TGAGCAGC................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAACAAGAACAA------------------------------------C.........................................................................................................................................................................................................................................	26	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGAACAA------------------------------------CA-------------------------------------------------------ACAACAAC.........................................................................................................................................................................	21	15	0.07	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAAGA..................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAA---CAACAACAAC---AAC------------------------------------------------------------------------------------------------AACAACAACAACAACAACAACAACAACAACAAC---AACAACAACAACA---ACAACAACAACAACAACAACAA----------------------CAA--------------C---AA---CAA-----------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAACAACAACAACAACAACAA------------------------CAACAACAAC------------------------------------------------------------------------AACAACAACAACAACAACAACAACAACAACAACAACAA-----------------------------------------------------CA----ACAACAACAAC--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGCAACAGC------AGCAACAACA------------ACAG---------CAG---CAGCAACAGC------------------------------------------------------------------------------------------------------AGCAGCAGCAACAACAGCAACAGCAGCAGCA---------GCAACAACA---A------C---A------------------CACCCAACGGTGCGCAG-----------CAGC---AGCAGCAAC---------ATCACCAGCAGCAACATCATCAGCAGCAGC------AGCAG------CA------GCATCA--------------------------------------------------C------CA------------------------ACAGCAACG------------------GGTTGTTGCCAGCAGCAACCAGCAACAGC------------------------------------------------------------------------AGCAGCTGCAGCAGCAACAGCAGCAGCAGCAGCAACAG-----------------------------------------------------CA----GCAGCAGCAGC--	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAACAACAAC------AACCACAGAG------------GCAA---------CCA---TTAAAACAACAGC---AGCAACAGCAACTGAAATTGCACTCGCCGTTGCAACAGCAACAGATATTGCAAGTAGCTCAGCACCACCTTTACCACCGGCAACAGCAACAACAATAGCACCATCTGCAACTTCAACAACAATTAGCACCACCAGCACAACAACA---AC------AGCAAC---------------------------------------------------------AACA---------------------------------------------------------------------AGTACAACAC--AACAACCACCAACAGCAACAACA-------------------------------------------------------------------------------------------------------------------------AGCAGTACAGATAGCAATCCCAGCCCCACACTTAAAACATTTCATTTAACAGA----------------------------------------TGAGCAGCAACA---------GGACGAGGA-----------------AACGGAGA----GCATTGGCAAC--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGCAGCAGC------AAGAGCAACA------------GCAA---------CAA---CAGCAGCAAG------------------------------------------------------------------------------------------------------AGCAACAGCAACAACAGCAGCAACAGCAGCAGC---A---GCAGCAACAACAG------C---AGC------AA----------------------CAA--------------C---AA---CAGCAGACACAACAG---CAG---------------CAACAAC------AACAGCAGCAGCA------GCAACAA---CAGCAG-----------------------------------CAGCCG------CA------G------------CAACAACAACCACAGCCCGTG---CAG------------------------CAAA---------------------------------------------------------------TCCATCAACCGCAACA---------ACAGCAA----------------------------CAGCA---------GCAACATGC-----GCTGCA------AATG--CA----ACAGCCACAAC--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTACTACTAC------AACAACTACT------------ACTA---------CAA---CAACTACTAC------------------------------------------------------------------------------------------------------TACAACAACCACTACTACAACAACAACAACCAC---TACTACAACAACA---A------C---AAC------CA----------------------CTA--------------C---TACAACAAC---------AA---CCACT---------ACTACAACAAC------AACAA------CC------ACTACA------ACAACA-----------------------A---------CAACCA---------------------------CTACTACTACAACAACAACCACTACTA------------------------CAACAACAAC------------------------------------------------------------------------AACCACCACTACTACAACAACAACAACCACTACAACAA-----------------------------------------------------CA----ACCACTACAAC--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAGCAACAGC------AACAGCAGCA------------A------------CTACAACAACAACAGC------------------------------------------------------------------------------------------------------AGCAACAGCAGCAGCAACAACAGCAACAGCAGC---AACTACAACAACA---A------C---AGC------AG----------------------CAG--------------C---AG---CAGCAACTACAACAA---CAA---------------CAGCACCAAATACAACAA------CA------------------GCAGCA-----------------------A---------CAGACACTGCAGCA---------------------------ACAGCAACAACAGCAGCAT------------------------CAGCAACTACAGC-----------------------------AAT-------------------------------------TTCAGCAGAAGCAACAACAGCAATTGCAGCAGGAGCAA-----------------------------------------------------CA----GCAGCAGCAAC--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAACAACAG---------------AG------------GCAACCTCAGTAGCAG---CAGTAATTGC---AACAACATCAG---------CAACAGTCGCCGCAGCAGCAGCAAC---TATTGAAACT------------------------------TCAACAACAATTGCACC------------AACAACAATTAGCAC---CAGCACAACAACA---ACAA---TAGCAAC------AA------------------------------------------CA---ACA------------------------------------------------ACT---------------------A---CACCAC--CACCACCA---CCA------------------------------------------------------CCACCACCAATAGCAACAA-------------------------------------------CAACAACAACAACAAGCAGAACAAATAGCAATCCCAGTTCCACACTTAAAACATTTACTTCAACAGA----------------------------------------TGAGCAGCAACA---------GGAGCAGGATCATGATCAGG------AACGAGGAGGAAATATTGGTAAC--	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAGCAGCAGT------AACAGTAGCA------------A------------CAGCAACAACAACAGC------------------------------------------------------------------------------------------------------AACAACAGCAGCAGCAACAACAACAACAGTAGC---AGCAGCAACAACA---A------TAGTAGC------AATAACAACACACCAAACGGTGC--------------------------------------ACAA---CAA---------------CAACAGC------AGCAA------CA------ACAACAA---CATCAG-----------------------------------CAACAT------CA------A------------CAACAACAACAACAACAAATACATCATCAAAGGATTGCAA----------------------------------------------------------------------------------------------------GCAGCAGCAA--CCAGCAGCAGCTGCAGCAA-----------------------------------------------------CA----ACAGCAGCAGC--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..GCAGCAGT------AACAGTAGCA------------A------------CAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CA------A------------CAACAACAACAACAACAAATACAT...........................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................TAGC------AATAACAACACACCAAACGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
................AACAGTAGCA------------A------------CAGCAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCAAAGGATTGCAA----------------------------------------------------------------------------------------------------GC.....................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGGATTGCAA----------------------------------------------------------------------------------------------------GCAGCAGCAA--CC.........................................................................................	26	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................CAGCAGCAACAACAACAACAGTAGC---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATTGCAA----------------------------------------------------------------------------------------------------GCAGCAGCAA--CC.........................................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCAA----------------------------------------------------------------------------------------------------GCAGCAGCAA--CCAGCAGCAGCT...............................................................................	28	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................ATCAG-----------------------------------CAACAT------CA------A------------CAACAAC............................................................................................................................................................................................................................................	21	2	1.00	2	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCAGCAA-----------------------------------------------------CA----ACAGC........	18	2	0.50	1	0	1	0	0	0	0
........................................................................................................................................................................................AACAACAACAACAGTAGC---AGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
.................................................................GC------------------------------------------------------------------------------------------------------AACAACAGCAGCAGCAACAACAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
............................................................................................................................................................................................ACAACAACAGTAGC---AGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0
..........................................................AACAACAGC------------------------------------------------------------------------------------------------------AACAACAGCAGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	8	0.13	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ACAA---CAA---------------CAACAGC------AGCAA------CA------A......................................................................................................................................................................................................................................................................................................................................	22	10	0.10	1	0	1	0	0	0	0
...................................................CAGCAACAACAACAGC------------------------------------------------------------------------------------------------------AACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	1	0	0
.............................................................AACAGC------------------------------------------------------------------------------------------------------AACAACAGCAGCAGCAACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	12	0.08	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................AA---------------CAACAGC------AGCAA------CA------ACAACAA---C............................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	0	1	0	0	0
........................................................................................................................................................................................AACAACAACAACAGTAGC---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................A---------------CAACAGC------AGCAA------CA------ACAACAA---C............................................................................................................................................................................................................................................................................................................................	23	15	0.07	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AA---CAA---------------CAACAGC------AGCAA------CA------AC.....................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	1	0	0	0	0	0
.............................................................AACAGC------------------------------------------------------------------------------------------------------AACAACAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................ACAA---CAA---------------CAACAGC------AGCAA------CA------.......................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droBip1

CAACAACAAA------AAATGGAACA------------ACAA---------CAA---GAACAACAAG------------------------------------------------------------------------------------------------------AACAACAACAAAAATTACAACAACAACAAGAA------GAACAACAACA---AC------AACAAC------AA----------------------GAACAACAAAATTACAAC---AA---CAACAAGAAC---AACAAGAACA---------------ACAA-----------------------------------------------------------------------------CAAAAATTACAACAACAACAAGAAGAACAACAACAACAACA-----------------------------------------------------------------------------------------ACAACAAAATTACAACAAAATTACAACAACAAGAAGAAGAACAACAACAACAACAACAACAACAACAACAAGAA-----------------------------------------------------CA----ACAACAACAAC--	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAACAACAAC------AAACGCAACA------------CCAA---------AAA---CAACAACAGC------------------------------------------------------------------------------------------------------ACCTAAAACAACAACAACATCAACAACAACAAC---AAATCA---AACAATAA------C---ACC------AA----------------------AAA--------------C---AA---CACAAACAGCAACAC---CAA---------------CAACACC------AACAATATCACCA------ACAACTA---AACCAA-----------------------------------CATCCA------CA------A------------CAATGCCACAAACAGAAATAACACCAA------------------------CAACAACAATAAT---------------------------------------------------------------------ACCAACAACAATAACAGCACCAACAACAACACCAACAA-----------------------------------------------------CA----ACAACATCAACAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACACCAACAA-----------------------------------------------------CA----ACAACA.......	24	10	0.10	1	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACACCAACAA-----------------------------------------------------CA----A............	20	17	0.06	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................ACATCAACAACAACAAC---A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAACAGCAGC------AGCAAATGCA------------A------------CAGCAGCAGCAA---A------------------------------------------------------------------------------------------------------TGCAGCAACAGCAGCAACAGCAACAACAGCAGC---AAATGCAGCAGCA---ACAGCAACAGCAG---------------------------------------------------------CAAATGCAGCAACAG---CAG---------------CAGCAGC------AGCAA------CAGCAGCAACAACA------GCAACA-----------ACA---------------------GCAA---------------------------CAACAGCAGCAACAACAGCCGCAACAA------------------------CAGCAACAAC----------------------------------------------------------------------------------------------------------------AGCAGCAACAGCGCTCACAGCATCAGCA-----AACGCA------GACGA-------------ACAGC--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAA------------------------CAGCAACAAC----------------------------------------------------------------------------------------------------------------AGCAGCAACAG...........................................................	26	5	0.20	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------CAGCAACAAC----------------------------------------------------------------------------------------------------------------AGCAGCAACAG...........................................................	23	9	0.11	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACA------GCAACA-----------ACA---------------------GC................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................TGCAGCAGCA---ACAGCAACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................AACAG---CAG---------------CAGCAGC------AGCA......................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA------------------------CAGCAACAAC----------------------------------------------------------------------------------------------------------------AGCAGCAAC.............................................................	21	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................A-----------ACA---------------------GCAA---------------------------CAACAGCAGCAAC......................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droWil2

CAACAACAAC------AACAATAACA------------ACAA---------CAA---TAACAACAAT------------------------------------------------------------------------------------------------------TACAACAACAACAACAACAACAATAACAACAAC---A---ATAACAACAATAA------C---AAC------AA----------------------CAA--------------C---AA---CAACAACAACAACAA---CAA---------------CAACAAC------AACAACAACAACA------ACAACAA---CAACAACA-----------------------------------ACAA------CA------A------------CAACAACAACAACAACAACTACGACAA------------------------CTACAACAACAAC---------------------------------------------------------AAT---------TACAACAACAACAACAACAACCACAACAACAACAACAA-----------------------------------------------------CA----ACAACAACAAC--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................CAATAA------C---AAC------AA----------------------CAA--------------C---AA---CAA........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAACTAC.............................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------------------------------------------AAT---------TACAACAACAACAACAACAAC.........................................................................................	27	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................CA-----------------------------------ACAA------CA------A------------CAACAACAACAACAACAA.................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0

droVir3

TAACAGCAGC------AGCAGCAGCA------------ACAT---------TAA---CAGCAACAAT------------------------------------------------------------------------------------------------------AACAGCAACAGCAACAACAACAACAGCAGCAGC---AGCAATAGCGGCA---A------C---AG------------------------------------------------C---AGCAACAACAATAGCAATAA---CAA------CAACACCAACAGCAAC------AGCAA------CA------GCAACA--------------------------------------------------A---------------------------TAATAATAATAGCAATAACAACAACAC------------------------CAATAACAAT------------------------------------------------------------------------AATAATAATAATAGCAATAACAACAACAACAACAACAA-----------------------------------------------------CA----ACAACAGCAAC--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................A---CAA------CAACACCAACAGCAAC------AGCAA------...............................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................ACAACAACAGCAGCAGC---AGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CAGCA------------ACAT---------TAA---CAGCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................GCGGCA---A------C---AG------------------------------------------------C---AGCAACAACA......................................................................................................................................................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AACAACAACAACAGCAGCAGC---AGCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................CAACAGCAAC------AGCAA------CA------GCAA...................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................CAA------CAACACCAACAGCAAC------AGCA......................................................................................................................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................CAACAACAGCAGCAGC---AGCAATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CAACAACAACAGCAGCAGC---AG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GCAACAACAACAACAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AACAACAACAACAGCAGCAGC---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................AA---CAA------CAACACCAACAGCAAC------A.........................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................AACAAT------------------------------------------------------------------------------------------------------AACAGCAACAGCAACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TAACAGCAGC------AGCAGCAGCA------------ACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................AACAACAGCAGCAGC---AGCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................ACACCAACAGCAAC------AGCAA------C..............................................................................................................................................................................................................................................................................................................................................	20	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................ACAAT------------------------------------------------------------------------------------------------------AACAGCAACAGCAAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................CAACACCAACAGCAAC------AGCA......................................................................................................................................................................................................................................................................................................................................................	20	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ACAGCAAC------AGCAA------CA------GCAACA--------------------------------------------------...............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAA-----------------------------------------------------CA----ACAACAGCA....	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA-----------------------------------------------------CA----ACAACAGC.....	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................CAACAGCAACAACAACAACAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACAACAACAACAACAACAA-----------------------------------------------------CA----.............	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................AA---CAGCAACAAT------------------------------------------------------------------------------------------------------AACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AACAGCAGC------AGCAGCAGCA------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................CAACAACAACAGCAGCAGC---AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AACAGCAGC------AGCAGCAGCA------------A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................AACAGCAAC------AGCAA------CA------GC.....................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................ACAGCAACAACAACAACAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................ACAACAACAACAGCAGCAGC---AGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................AACAGCAACAACAACAACAGCAGCAGC---A................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AGCAACAACAACAACAGCAGCAGC---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................T------------------------------------------------------------------------------------------------------AACAGCAACAGCAACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..ACAGCAGC------AGCAGCAGCA------------ACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................ACAGCAAC------AGCAA------CA------GCAACA--------------------------------------------------A---------------------------...................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAACAACAAC------AAGAACTGCA------------ACAA---------CAA---CAACAACAAC------------------------------------------------------------------------------------------------------AACAGCCACAACAGCAACAACAACAATAGCAAC---CACAGCAACAACA---AC------AACAAC------AA------------------------------------------------CAACAACAGCAATAG---CAA------CAACAGCAACAACAGC------AACAA------CA------ACAACA------ACAACA-----------------------------------ACAA------CG------G------------TAACAACAACAATAGCAACCACAGCAA------------------------CAGCAACAACACA----------------------------------------------------------GTT--------TACAACGACAAGAACAGCATCAACAACAACAACAACAA-----------------------------------------------------CA----GCAATAGCTAC--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAA-----------------------------------------------------CA----GCAATAGCT....	25	3	0.33	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAA-----------------------------------------------------CA----GCAATA.......	20	20	0.05	1	1	0	0	0	0	0
...................AACTGCA------------ACAA---------CAA---CAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGCAA------------------------CAGCAACAACA.....................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................AACAACAGC------AACAA------CA------ACAACA------...........................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0

droGri2

CAACAACAAC------AGCAACAACA------------ACAG---------CAA---CAACAACAGC------------------------------------------------------------------------------------------------------AACAACACCAACAATATCAACATCAACAACAAC---AGCACAAACAACA---G------C---AAC------AA----------------------CAA--------------C---TGCAACAAC---------AA---GAGCA---------GCAGCAAGAGC------AACAA------CA------ACATCA------ACAACA-----------ACA------------------------G------CA------A------------CAACAACAGCAACAACAACTGCAACAA------------------------CAAGAGCAAC------------------------------------------------------------------------AGCAAGAGCAACAACAAGAGCAACAGCAAGAGCAACAA-----------------------------------------------------CA----ACAGCGACAAC--	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dse_901

scaffold_17:546048-546198 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.6	-3.5	-3.1