ID:

dse_90

 Coordinate:

scaffold_13:329678-329828 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-34.2 -34.0 -34.0

Flybase annnotation

exon [dsec_GLEANR_10250:7]; CDS [Dsec\GM10225-cds]; intron [Dsec\GM10225-in]

No Repeatable elements found

mature
  1. dse_100  scaffold_13:329647-329667 +
  2. dse_90  scaffold_13:329705-329725 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CCAACAAGTTCAATGGAATGTATGTGGAGCCCGTCACGGCGACGCATATGGTAAGTGTATTTCCCAAATTGTTTCTTTTTAAGATTACATATATGGGGAATTTTGCAAGTTTTGAGTTATCATCATAATTGCCTGCGATGATAGCTCACTTCCTTTTACATATTCGGAGGAATGACACATTAAGTACATACTATGTCTGATTATATGGTCTCATTCCTCCGAATATGTAAAAGAAAGTGTGCTATCAAAGT
**************************************************....((((((((((((...(((.((((...))))..)))....))))))))...........((((((((((((.((......)).))))))))))))(((((............)))))....))))....((.((((...))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V113
male body		 V115
head
 V114
embryo
.........................................................................................................................................................TTTTACATATTCGGAGGAATG............................................................................. 21 0 2 57.00 114 35 50 26 3
.........................................................................................................................................................TTTTACATATTCGGAGGAATGA............................................................................ 22 0 2 38.50 77 32 33 10 2
................................................................................................................................................................................................................TCTCATTCCTCCGAATATGTA...................... 21 0 1 22.00 22 20 0 2 0
...........................................................................................................................................................TTACATATTCGGAGGAATGACA.......................................................................... 22 0 1 18.00 18 8 6 2 2
...........................................................................................................................................................TTACATATTCGGAGGAATGAC........................................................................... 21 0 1 16.00 16 4 10 2 0
.....................................................................................................................................................................................................................TTCCTCCGAATATGTAAAAGA................. 21 0 1 7.00 7 3 1 3 0
....................................................................................................................................................................................................................ATTCCTCCGAATATGTAAAAGA................. 22 0 1 7.00 7 4 1 2 0
................................................................................................................................................................................................................TCTCATTCCTCCGAATATGT....................... 20 0 1 6.00 6 5 1 0 0
.........................................................................................................................................................TTTTACATATTCGGAGGAAT.............................................................................. 20 0 2 5.50 11 2 4 5 0
................................................................................................................................................................................................................TCTCATTCCTCCGAATATGTAA..................... 22 0 1 5.00 5 3 0 2 0
.......................................................................................................................................................CCTTTTACATATTCGGAGGAA............................................................................... 21 0 1 5.00 5 2 1 2 0
............................................................................................................................................................TACATATTCGGAGGAATGA............................................................................ 19 0 2 4.50 9 6 0 3 0
.............................................................................................................................................................ACATATTCGGAGGAATGA............................................................................ 18 0 2 3.00 6 2 0 4 0
.......................................................................................................................................................CCTTTTACATATTCGGAGGAATG............................................................................. 23 0 1 3.00 3 0 1 1 1
.......................................................................................................................................................CCTTTTACATATTCGGAGGA................................................................................ 20 0 1 3.00 3 1 1 1 0
.....................................................................................................................................................................................................................TTCCTCCGAATATGTAAAAG.................. 20 0 2 2.00 4 0 1 3 0
....................................................................................................................................................................................................................ATTCCTCCGAATATGTAAAAG.................. 21 0 2 2.00 4 4 0 0 0
........................................................................................................................................................CTTTTACATATTCGGAGGAAT.............................................................................. 21 0 2 2.00 4 1 1 2 0
.........................................................................................................................................................TTTTACATATTCGGAGGAATGT............................................................................ 22 1 2 2.00 4 1 1 2 0
.............................................................................................................................................................ACATATTCGGAGGAATGACACA........................................................................ 22 0 1 2.00 2 1 1 0 0
.......................................................................................................................................................CCTTTTACATATTCGGAGGAAT.............................................................................. 22 0 1 2.00 2 1 1 0 0
...........................................................................................................................................................TTACATATTCGGAGGAATG............................................................................. 19 0 2 2.00 4 0 2 2 0
................................................................................................................................................................................................................ACTCATTCCTCCGAATATGTA...................... 21 1 1 2.00 2 2 0 0 0
.......................................................................................................................................................CCTTTTACATATTCGGAGG................................................................................. 19 0 1 2.00 2 1 0 1 0
....................................................................................................................................................................................................................ATTCCTCCGAATATGTAAAAGAA................ 23 0 1 2.00 2 2 0 0 0
........................................................................................................................................................CTTTTACATATTCGGAGGAATG............................................................................. 22 0 2 2.00 4 2 1 1 0
.................................................................................................................................................................................................................CTCATTCCTCCGAATATGTA...................... 20 0 1 2.00 2 2 0 0 0
..........................................................................................................................................................TTTACATATTCGGAGGAATG............................................................................. 20 0 2 1.50 3 2 1 0 0
.............................................................................................................................................................ACATATTCGGAGGAATGACA.......................................................................... 20 0 1 1.00 1 1 0 0 0
............................................................................................................................................................TACATATTCGGAGGAATG............................................................................. 18 0 2 1.00 2 0 0 2 0
....................................................................................................................................................................................................................ATTCCTCCGAATATGTAAAA................... 20 0 2 1.00 2 2 0 0 0
................................................................................................................................................................................................................TCTCATTCCTCCGAATATGTTA..................... 22 1 1 1.00 1 1 0 0 0
CCAACAAGTTCAATGGAATGTATGT.................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0
.................................................................................................................................................................................................................CTCATTCCTCCGAATATGTAAA.................... 22 0 1 1.00 1 0 0 1 0
................AATGTATGTGGAGCCCGTCA....................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1
.......................................................................................................................................................CTTTTTACATATTCGGAGGAA............................................................................... 21 1 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................CTCATTCCTCCGAATATGTAA..................... 21 0 1 1.00 1 1 0 0 0
...........................................................................................................................................................TTACATATTCGGAGGAAT.............................................................................. 18 0 2 1.00 2 0 0 2 0
................................................................................................................................................................................................................TCTCATTCCTCCGAATGTA........................ 19 2 1 1.00 1 1 0 0 0
............................................................................................................................................................TACATATTCGGAGGAATGAC........................................................................... 20 0 1 1.00 1 1 0 0 0
........................................................................................................................................................CTTTTACATATTCGGAGG................................................................................. 18 0 2 1.00 2 0 0 2 0
.......................................................................................................................................................CCTTTTACATATTCGGAG.................................................................................. 18 0 1 1.00 1 0 0 1 0
..........................................................................................................................................................TTTACATATTCGGAGGAATGA............................................................................ 21 0 2 1.00 2 0 2 0 0
................................................................................................................................................................................................................TCTCATTACTCCGAATATGTA...................... 21 1 1 1.00 1 1 0 0 0
....................................................................................................................................................................................................................ATTCCTCCGAATATGTAAAAA.................. 21 1 2 0.50 1 1 0 0 0
.........................................................................................................................................................TTTTACATATTCGGAGGAA............................................................................... 19 0 2 0.50 1 0 0 1 0
.........................................................................................................................................................TTTTACATATTCGGAGGACTGA............................................................................ 22 1 2 0.50 1 0 1 0 0
.........................................................................................................................................................TTTTACATATTCGGAGGATT.............................................................................. 20 1 2 0.50 1 0 0 1 0
.........................................................................................................................................................CTTTACATATTCGGAGGAATGA............................................................................ 22 1 2 0.50 1 1 0 0 0
................................GTCTCGGCGACGCAGTTGGTA...................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 1
.........................................................................................................................................................TTTTACATATTCGCAGGAATGA............................................................................ 22 1 2 0.50 1 0 0 1 0
.....................................................................................................................................................................................................................TTCCTCAGAATATGTAAAAG.................. 20 1 2 0.50 1 1 0 0 0
...........................................................................................................................................................TTACATATTCGGAGGAATGTT........................................................................... 21 2 2 0.50 1 1 0 0 0
.........................................................................................................................................................TTTTACATATTCGGACGAATG............................................................................. 21 1 2 0.50 1 0 1 0 0
.........................................................................................................................................................TTTTACCTATTCGGAGGAATGA............................................................................ 22 1 2 0.50 1 0 1 0 0
....................................................................................................................................................................................................................ATTCCTCCGAATATGTAAA.................... 19 0 2 0.50 1 1 0 0 0
.........................................................................................................................................................ATTTACATATTCGGAGGAATG............................................................................. 21 1 2 0.50 1 0 0 1 0
.........................................................................................................................................................TTTTACATATTCGGAGGATTGA............................................................................ 22 1 2 0.50 1 0 1 0 0
.....................................................................................................................................................................................................................TTCCTCCGAATATGTAAAAGT................. 21 1 2 0.50 1 0 0 1 0
.........................................................................................................................................................TTTTACATATTCGGAGGACTG............................................................................. 21 1 2 0.50 1 0 1 0 0
........................................................................................................................................................CTTTTACATATTCGGAGGAATGA............................................................................ 23 0 2 0.50 1 1 0 0 0
...........................................................................................................................................................TTACACATTCGGAGGAATGA............................................................................ 20 1 2 0.50 1 0 0 0 1
....................................................................................................................................................................................................................ATTCCTCCGAATATGTAAAAC.................. 21 1 2 0.50 1 1 0 0 0
.........................................................................................................................................................TTTTACATATTCGGAGGAGT.............................................................................. 20 1 2 0.50 1 0 1 0 0
........................................................................................................................................................CTTTTACATATTCGGAGGAATGAA........................................................................... 24 1 2 0.50 1 1 0 0 0
.........................................................................................................................................................TTTTACATATTCGGAGGTTT.............................................................................. 20 2 3 0.33 1 0 1 0 0

Anti-sense strand reads

GGTTGTTCAAGTTACCTTACATACACCTCGGGCAGTGCCGCTGCGTATACCATTCACATAAAGGGTTTAACAAAGAAAAATTCTAATGTATATACCCCTTAAAACGTTCAAAACTCAATAGTAGTATTAACGGACGCTACTATCGAGTGAAGGAAAATGTATAAGCCTCCTTACTGTGTAATTCATGTATGATACAGACTAATATACCAGAGTAAGGAGGCTTATACATTTTCTTTCACACGATAGTTTCA
**************************************************....((((((((((((...(((.((((...))))..)))....))))))))...........((((((((((((.((......)).))))))))))))(((((............)))))....))))....((.((((...))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V113
male body		 M054
female body
 V115
head
 V114
embryo
...................................................................................................................................................................................................................GTAAGGAGGCTTATACATTTT................... 21 0 2 57.00 114 50 35 26 3
..................................................................................................................................................................................................................AGTAAGGAGGCTTATACATTTT................... 22 0 2 38.50 77 33 32 10 2
....................................................................................................................................................................................................................TAAGGAGGCTTATACATTTT................... 20 0 2 5.50 11 4 2 5 0
..................................................................................................................................................................................................................AGTAAGGAGGCTTATACAT...................... 19 0 2 4.50 9 0 6 3 0
..................................................................................................................................................................................................................AGTAAGGAGGCTTATACA....................... 18 0 2 3.00 6 0 2 4 0
..................................................................................................................................................................................................................TGTAAGGAGGCTTATACATTTT................... 22 1 2 2.00 4 1 1 2 0
...................................................................................................................................................................................................................GTAAGGAGGCTTATACATTTTC.................. 22 0 2 2.00 4 1 2 1 0
...................................................................................................................................................................................................................GTAAGGAGGCTTATACATT..................... 19 0 2 2.00 4 2 0 2 0
........................................................................................................................................................GAAAATGTATAAGCCTCCTT............................................................................... 20 0 2 2.00 4 1 0 3 0
....................................................................................................................................................................................................................TAAGGAGGCTTATACATTTTC.................. 21 0 2 2.00 4 1 1 2 0
........................................................................................................................................................GAAAATGTATAAGCCTCCTTA.............................................................................. 21 0 2 2.00 4 0 4 0 0
...................................................................................................................................................................................................................GTAAGGAGGCTTATACATTT.................... 20 0 2 1.50 3 1 2 0 0
.........................................................................................................................................................AAAATGTATAAGCCTCCTTA.............................................................................. 20 0 2 1.00 2 0 2 0 0
........................ACCTCGGGTAGTGCCGCTGCG.............................................................................................................................................................................................................. 21 1 1 1.00 1 0 0 0 1
..................................................................................................................................................................................................................AGTAAGGAGGCTTATACATTT.................... 21 0 2 1.00 2 2 0 0 0
....................................................................................................................................................................................................................TAAGGAGGCTTATACATT..................... 18 0 2 1.00 2 0 0 2 0
...................................................................................................................................................................................................................GTAAGGAGGCTTATACAT...................... 18 0 2 1.00 2 0 0 2 0
.................................................................................................................................................................TAAGCCTCCTTACTGTGTAAT..................................................................... 21 0 1 1.00 1 0 0 0 1
.......................................................................................................................................................................................................................GGAGGCTTATACATTTTC.................. 18 0 2 1.00 2 0 0 2 0
..................................................................................................................................................................................................................AGTAAGGAGGCTTATACATTTTC.................. 23 0 2 0.50 1 0 1 0 0
....................................................................................................................................................................................................................TGAGGAGGCTTATACATTTT................... 20 1 2 0.50 1 1 0 0 0
..................................................................................................................................................................................................................AGTAAGGAGGCTTATACATTTC................... 22 1 2 0.50 1 0 1 0 0
..................................................................................................................................................................................................................AGTTAGGAGGCTTATACATTTT................... 22 1 2 0.50 1 1 0 0 0
...................................................................................................................................................................................................................GTCAGGAGGCTTATACATTTT................... 21 1 2 0.50 1 1 0 0 0
........................................................................................................................................................GAAAATGTATAAGACTCCTT............................................................................... 20 1 2 0.50 1 0 1 0 0
.................................................................................................................................................................................................................AAGTAAGGAGGCTTATACATTTTC.................. 24 1 2 0.50 1 0 1 0 0
.................................................................................................................................................................................................................TTGTAAGGAGGCTTATACATT..................... 21 2 2 0.50 1 0 1 0 0
..........................................................................................................................................................AAATGTATAAGCCTCCTTA.............................................................................. 19 0 2 0.50 1 0 1 0 0
..................................................................................................................................................................................................................AGTCAGGAGGCTTATACATTTT................... 22 1 2 0.50 1 1 0 0 0
..................................................................................................................................................................................................................AGTAAGGAGGCTTACACATT..................... 20 1 2 0.50 1 0 0 0 1
....................................................................................................................................................................................................................TTAGGAGGCTTATACATTTT................... 20 1 2 0.50 1 0 0 1 0
..................................................................................................................................................................................................................AGTAAGGACGCTTATACATTTT................... 22 1 2 0.50 1 0 0 1 0
..................................................................................................................................................................................................................AGTAAGGAGGCTTATCCATTTT................... 22 1 2 0.50 1 1 0 0 0
.....................................................................................................................................................................................................................AAGGAGGCTTATACATTTT................... 19 0 2 0.50 1 0 0 1 0
........................................................................................................................................................CAAAATGTATAAGCCTCCTTA.............................................................................. 21 1 2 0.50 1 0 1 0 0
..............................................................................................................................................TGGAGTGAAGGAAAAAGTA.......................................................................................... 19 2 2 0.50 1 1 0 0 0
...................................................................................................................................................................................................................GTAAGGAGGCTTATACATTTA................... 21 1 2 0.50 1 0 0 1 0
...................................................................................................................................................................................................................GTAAGCAGGCTTATACATTTT................... 21 1 2 0.50 1 1 0 0 0
.......................................................................................................................................................TGAAAATGTATAAGCCTCCTT............................................................................... 21 1 2 0.50 1 0 0 1 0
........................................................................................................................................................AAAAATGTATAAGCCTCCTTA.............................................................................. 21 1 2 0.50 1 0 1 0 0
....................................................................................................................................................................................................................TTTGGAGGCTTATACATTTT................... 20 2 3 0.33 1 1 0 0 0
.............................................................................................................................................................................................TGGTACAGACTAGTATAC............................................ 18 2 4 0.25 1 0 0 1 0
........................................................................................................................GTATTATAGACGGACGCTA................................................................................................................ 19 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_13:329594-329775 - dse_90 TGCAAGTTTTGAGTTATC--------------------ATCATAATTGCCTGCGATGATAGCTCACTTCCTTTTA--------------CATATTCGGAGGAATGACACATTAAGTACATACTATGTCTGATTATATGGTCTCATTCCTCCGAATATGTAAAAGAAAGTGTGCTATCAAAGTCGTCAGTTGGGAA---------TTATGGTG----------------------------------------------------------------------------------------------------------------------------------------------TATAATTATAAGC
droSim2 3r:21046747-21046878 - TGCAAGTTTTGAGTTATC--------------------ATCATAACTGCCTGCGATGATAGCACACTTCCTTTTA--------------CATATTCGGAGGAATGAGACCTTAAGTACAT---ATGTCTGATTATATGGT----------------------------------ATCAAAGTCGTCAGTTGGGAA---------TTGTGGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chr3R:21532318-21532484 - TGCAA----------------------------------TCGTAACTGCTTGCGATGATAGCACACTTCCTATTAAATTTAATACATAACATATCCGGAGGAATGTGACCTTAAGTACAA---GTGTCTGATTGCCTGGT----------------------------------ATGTAAGTCGTCGCTTGGGAA---------TTATGGTAGATAA---------------TTGTGAAACGTTTGAGCTTCTTA------------------------------------------TCTA---------------------------------------------------------------AGC
droEre2 scaffold_4820:6506070-6506321 + TTCAAGTC-TAAGTAAGCAAGAAAAAATGCTTA------------------GTTTTGACAGCACATTTCCTGTTAAATGTAATACA------ATCTATTGACATGTGACCTTAAATATGT---AAATGTT--------------------------------------------ATCAC-ATCGTCACTTGGTACCATGCATAAATAATCCAAATAGATGGGAATTAACATGTTACGCAGCATTTGGTTTTCTTA------------------------------------------TCTGAGCTAGTGCCATGTACCAAACAGAAATTCATTATTTATAAGTAATTTATAGTTTATAGTTATAAGT
droEug1 scf7180000409682:1057349-1057353 + CATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415367:880602-880786 + TTTAAAAT-------ACTAATAAAAGATTTTAAATATTCATAAGATTTTTTTTAATATTTGTAAAGTACTTTAAA--------------TATTTTTGGAGTATTT-------------------------------------------------------------------------------------TTAAA---------CTATTTTAAATAG---------------TTGTAAAGTGTTTTAAATATTTTTAGAGTATTTTAAATGCCCATGAAGTATTTTAAATATTTGGATTTA---------------------------------------AATA-------------ATCCACAATC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
TGCAAGTTTTGAGTTATC--------------------ATCATAATTGCCTGCGATGATAGCTCACTTCCTTTTA--------------CATATTCGGAGGAATGACACATTAAGTACATACTATGTCTGATTATATGGTCTCATTCCTCCGAATATGTAAAAGAAAGTGTGCTATCAAAGTCGTCAGTTGGGAA---------TTATGGTG----------------------------------------------------------------------------------------------------------------------------------------------TATAATTATAAGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................TTTTA--------------CATATTCGGAGGAATG......................................................................................................................................................................................................................................................................21257.001143550326
......................................................................TTTTA--------------CATATTCGGAGGAATGA.....................................................................................................................................................................................................................................................................22238.50773233210
...........................................................................................................................................TCTCATTCCTCCGAATATGTA...............................................................................................................................................................................................................21122.002220002
........................................................................TTA--------------CATATTCGGAGGAATGACA...................................................................................................................................................................................................................................................................22118.00188622
........................................................................TTA--------------CATATTCGGAGGAATGAC....................................................................................................................................................................................................................................................................21116.001641002
................................................................................................................................................TTCCTCCGAATATGTAAAAGA..........................................................................................................................................................................................................2117.0073103
...............................................................................................................................................ATTCCTCCGAATATGTAAAAGA..........................................................................................................................................................................................................2217.0074102
...........................................................................................................................................TCTCATTCCTCCGAATATGT................................................................................................................................................................................................................2016.0065100
......................................................................TTTTA--------------CATATTCGGAGGAAT.......................................................................................................................................................................................................................................................................2025.50112405
...........................................................................................................................................TCTCATTCCTCCGAATATGTAA..............................................................................................................................................................................................................2215.0053002
....................................................................CCTTTTA--------------CATATTCGGAGGAA........................................................................................................................................................................................................................................................................2115.0052102
.........................................................................TA--------------CATATTCGGAGGAATGA.....................................................................................................................................................................................................................................................................1924.5096003
..........................................................................A--------------CATATTCGGAGGAATGA.....................................................................................................................................................................................................................................................................1823.0062004
....................................................................CCTTTTA--------------CATATTCGGAGGAATG......................................................................................................................................................................................................................................................................2313.0030111
....................................................................CCTTTTA--------------CATATTCGGAGGA.........................................................................................................................................................................................................................................................................2013.0031101
................................................................................................................................................TTCCTCCGAATATGTAAAAG...........................................................................................................................................................................................................2022.0040103
...............................................................................................................................................ATTCCTCCGAATATGTAAAAG...........................................................................................................................................................................................................2122.0044000
.....................................................................CTTTTA--------------CATATTCGGAGGAAT.......................................................................................................................................................................................................................................................................2122.0041102
......................................................................TTTTA--------------CATATTCGGAGGAATGT.....................................................................................................................................................................................................................................................................2222.0041102
..........................................................................A--------------CATATTCGGAGGAATGACACA.................................................................................................................................................................................................................................................................2212.0021100
....................................................................CCTTTTA--------------CATATTCGGAGGAAT.......................................................................................................................................................................................................................................................................2212.0021100
........................................................................TTA--------------CATATTCGGAGGAATG......................................................................................................................................................................................................................................................................1922.0040202
....................................................................CCTTTTA--------------CATATTCGGAGG..........................................................................................................................................................................................................................................................................1912.0021001
...............................................................................................................................................ATTCCTCCGAATATGTAAAAGAA.........................................................................................................................................................................................................2312.0022000
.....................................................................CTTTTA--------------CATATTCGGAGGAATG......................................................................................................................................................................................................................................................................2222.0042101
............................................................................................................................................CTCATTCCTCCGAATATGTA...............................................................................................................................................................................................................2012.0022000
.......................................................................TTTA--------------CATATTCGGAGGAATG......................................................................................................................................................................................................................................................................2021.5032100
..........................................................................A--------------CATATTCGGAGGAATGACA...................................................................................................................................................................................................................................................................2011.0011000
.........................................................................TA--------------CATATTCGGAGGAATG......................................................................................................................................................................................................................................................................1821.0020002
...............................................................................................................................................ATTCCTCCGAATATGTAAAA............................................................................................................................................................................................................2021.0022000
............................................................................................................................................CTCATTCCTCCGAATATGTAAA.............................................................................................................................................................................................................2211.0010001
............................................................................................................................................CTCATTCCTCCGAATATGTAA..............................................................................................................................................................................................................2111.0011000
........................................................................TTA--------------CATATTCGGAGGAAT.......................................................................................................................................................................................................................................................................1821.0020002
.........................................................................TA--------------CATATTCGGAGGAATGAC....................................................................................................................................................................................................................................................................2011.0011000
.....................................................................CTTTTA--------------CATATTCGGAGG..........................................................................................................................................................................................................................................................................1821.0020002
....................................................................CCTTTTA--------------CATATTCGGAG...........................................................................................................................................................................................................................................................................1811.0010001
.......................................................................TTTA--------------CATATTCGGAGGAATGA.....................................................................................................................................................................................................................................................................2121.0020200
...............................................................................................................................................ATTCCTCCGAATATGTAAAAA...........................................................................................................................................................................................................2120.5011000
......................................................................TTTTA--------------CATATTCGGAGGAA........................................................................................................................................................................................................................................................................1920.5010001
........................................................................TTA--------------CATATTCGGAGGAATGTT....................................................................................................................................................................................................................................................................2120.5011000
...............................................................................................................................................ATTCCTCCGAATATGTAAA.............................................................................................................................................................................................................1920.5011000
................................................................................................................................................TTCCTCCGAATATGTAAAAGT..........................................................................................................................................................................................................2120.5010001
.....................................................................CTTTTA--------------CATATTCGGAGGAATGA.....................................................................................................................................................................................................................................................................2320.5011000
...............................................................................................................................................ATTCCTCCGAATATGTAAAAC...........................................................................................................................................................................................................2120.5011000
.....................................................................CTTTTA--------------CATATTCGGAGGAATGAA....................................................................................................................................................................................................................................................................2420.5011000
droSim2
TGCAAGTTTTGAGTTATC--------------------ATCATAACTGCCTGCGATGATAGCACACTTCCTTTTA--------------CATATTCGGAGGAATGAGACCTTAAGTACAT---ATGTCTGATTATATGGT----------------------------------ATCAAAGTCGTCAGTTGGGAA---------TTGTGGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................TCAAAGTCGTCAGTTGGGAA---------TTGTGG.............................................................................................................................................................2611.00100000010000000000
dm3
TGCAA----------------------------------TCGTAACTGCTTGCGATGATAGCACACTTCCTATTAAATTTAATACATAACATATCCGGAGGAATGTGACCTTAAGTACAA---GTGTCTGATTGCCTGGT----------------------------------ATGTAAGTCGTCGCTTGGGAA---------TTATGGTAGATAA---------------TTGTGAAACGTTTGAGCTTCTTA------------------------------------------TCTA---------------------------------------------------------------AGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..............................................................................................................TTAAGTACAA---GTGTCTGATTGCC.......................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................TACAA---GTGTCTGATTGCCTGGT----------------------------------ATG..............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TGTCTGATTGCCTGGT----------------------------------ATGT.............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................GATAA---------------TTGTGAAACGTTTGAGCTTCTTA------------------------------------------......................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................TGCCTGGT----------------------------------ATGTAAGTCGTCGCTTG................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................TTGGGAA---------TTATGGTAGATAA---------------TTGTGA.................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................T----------------------------------ATGTAAGTCGTCGCTTGGGAA---------T..................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGATTGCCTGGT----------------------------------ATGTAAGTCG.......................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................................................TTGCCTGGT----------------------------------ATGTAAGTCGTC.....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTCAAGTC-TAAGTAAGCAAGAAAAAATGCTTA------------------GTTTTGACAGCACATTTCCTGTTAAATGTAATACA------ATCTATTGACATGTGACCTTAAATATGT---AAATGTT--------------------------------------------ATCAC-ATCGTCACTTGGTACCATGCATAAATAATCCAAATAGATGGGAATTAACATGTTACGCAGCATTTGGTTTTCTTA------------------------------------------TCTGAGCTAGTGCCATGTACCAAACAGAAATTCATTATTTATAAGTAATTTATAGTTTATAGTTATAAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droEug1
CATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TTTAAAAT-------ACTAATAAAAGATTTTAAATATTCATAAGATTTTTTTTAATATTTGTAAAGTACTTTAAA--------------TATTTTTGGAGTATTT-------------------------------------------------------------------------------------TTAAA---------CTATTTTAAATAG---------------TTGTAAAGTGTTTTAAATATTTTTAGAGTATTTTAAATGCCCATGAAGTATTTTAAATATTTGGATTTA---------------------------------------AATA-------------ATCCACAATCSizeHit CountTotal NormTotal
No Reads

Generated: 05/17/2015 at 10:47 PM