ID:

dse_898

 Coordinate:

scaffold_17:126544-126645 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.5 -19.3 -19.0

Flybase annnotation

CDS [Dsec\GM13438-cds]; exon [dsec_GLEANR_14050:6]; CDS [Dsec\GM13438-cds]; exon [dsec_GLEANR_14050:7]; intron [Dsec\GM13438-in]

No Repeatable elements found

mature
  1. scaffold_489:4420-4442 +
  2. dse_898  scaffold_17:126574-126596 +
star

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------##################################################
GAGAATCGAAAAGCAGCTCAGCGAGGAGTGTTATGCTAAAATGGAAAGCAGTGAGTACCAGTGACATTCCTCACAAGTCCTTCGTGCCCCACGTTGGGCGCCAAGTCTATTAGTTTTAGAAACCAACTTATACATTTCTGTCCTCTGCACAGATCTGGATTTGCTCGGTGCGACAGCTGTGGAGGATGCCCTGCAGGACGAC
**************************************************((((((((..((((......))))..)).(((.((((((......)))))).)))((((.......)))).....))))))......((((.......))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V114
embryo
 M054
female body
 V115
head
 V113
male body
.............................................................................TCGTGGGTGCCCCACGTTGGGCGCCA................................................................................................... 26 3 2 1340.50 2681 2636 0 33 12
................................................................................TTCGTGCCCCACGTTGGGCGCCA................................................................................................... 23 0 2 422.50 845 305 471 55 14
.................................................................................TCGTGCCCCACGTTGGGCGCCA................................................................................................... 22 0 2 400.00 800 193 485 100 22
................................................................................TTCGAGCCCCACGTTGGGCGCCA................................................................................................... 23 1 3 341.00 1023 399 471 125 28
.................................................................................TCGAGCCCCACGTTGGGCGCCA................................................................................................... 22 1 4 166.00 664 130 389 110 35
................................................................................TTCGGGCCCCACGTTGGGCGCCA................................................................................................... 23 1 4 156.00 624 232 326 61 5
.................................................................................TCGGGCCCCACGTTGGGCGCCA................................................................................................... 22 1 6 94.33 566 117 353 75 21
..................................................................................CGTGCCCCACGTTGGGCGCCA................................................................................................... 21 0 3 72.67 218 154 54 6 4
...................................................................................GTGCCCCACGTTGGGCGCCA................................................................................................... 20 0 4 25.00 100 71 15 12 2
..............................................................................CGTGGGTGCCCCACGTTGGGCGCCA................................................................................................... 25 3 9 15.11 136 130 0 5 1
..................................................................................CGAGCCCCACGTTGGGCGCCA................................................................................................... 21 1 7 12.14 85 26 51 5 3
.................................................................................TCGCGCCCCACGTTGGGCGCCA................................................................................................... 22 1 2 9.00 18 0 15 3 0
................................................................................TTCGTGCCCCACGTTGGG........................................................................................................ 18 0 2 8.50 17 1 16 0 0
.............................................................................TCGTGGGTGCCCCACGTTGGGCGCC.................................................................................................... 25 3 2 8.00 16 16 0 0 0
................................................................................TTCGTGCCCCACGTTGGGCG...................................................................................................... 20 0 2 7.00 14 0 14 0 0
................................................................................TTCGCGCCCCACGTTGGGCGCCA................................................................................................... 23 1 2 6.50 13 1 11 1 0
.............................................................................TCGTGGGTGCCCCACGTTGGGCGC..................................................................................................... 24 3 2 6.50 13 11 0 1 1
...........................................................................CGTGGTTCGTGCCCCACGTTGGGCGCCA................................................................................................... 28 3 2 4.50 9 9 0 0 0
................................................................................TTCGTGCCCCACGTTGGGC....................................................................................................... 19 0 2 3.50 7 1 6 0 0
.................................................................................TCGTGGCCCACGTTGGGCGCCA................................................................................................... 22 1 2 3.50 7 7 0 0 0
................................................................................TTCGGGACCCACGTTGGGCGCCA................................................................................................... 23 2 4 2.50 10 0 10 0 0
.............................................................................TCGTCGGTGCCCCACGTTGGGCGCCA................................................................................................... 26 3 1 2.00 2 2 0 0 0
.............................................................................TCGTGGGTGCCCCACGTTGGGCG...................................................................................................... 23 3 2 2.00 4 3 0 1 0
................................................................................................................................................................................CTGTGGAGGATGCCCTGCA....... 19 0 1 2.00 2 2 0 0 0
.................................................................................CCGTGCCCCACGTTGGGCGCCA................................................................................................... 22 1 3 2.00 6 1 5 0 0
...............................................................................CTTCGGGCCCCACGTTGGGCGCCA................................................................................................... 24 1 2 2.00 4 1 2 1 0
................................................................................TTCGAGTCCCACGTTGGGCGCCA................................................................................................... 23 2 3 1.67 5 4 0 1 0
................................................................................TTCGTGTCCCACGTTGGGCGCCA................................................................................................... 23 1 2 1.50 3 3 0 0 0
................................................................................TTCGTGCCCCATGTTGGGCGCCA................................................................................................... 23 1 2 1.50 3 2 1 0 0
.................................................................................TCGTGCCACACGTTGGGCGCCA................................................................................................... 22 1 2 1.50 3 0 2 1 0
.................................................................................TCGTGCCCCACGTTGGGCGCC.................................................................................................... 21 0 2 1.50 3 0 3 0 0
.................................................................................TCGTGCACCACGTTGGGCGCCA................................................................................................... 22 1 2 1.50 3 0 3 0 0
................................................................................TTCGTGCCCCACGTTGGGCGC..................................................................................................... 21 0 2 1.50 3 1 2 0 0
.................................................................................TCGTGCCCCACGTTGGGCGCGA................................................................................................... 22 1 2 1.50 3 0 3 0 0
................................................................................TTTGTGCCCCACGTTGGGCGCCA................................................................................................... 23 1 4 1.50 6 6 0 0 0
................................................................................TGGGTGCCCCACGTTGGGCGCCA................................................................................................... 23 2 8 1.38 11 9 0 2 0
................................................................................TTCGAGCCCCATGTTGGGCGCCA................................................................................................... 23 2 3 1.33 4 0 4 0 0
................................................................................TTCGAGCCCCACGTTGGGCGCC.................................................................................................... 22 1 5 1.20 6 0 6 0 0
....................................................................................TGCCCCACGTTGGGCGCCA................................................................................................... 19 0 19 1.11 21 16 4 1 0
................................................................................TTCGTGCCCCACGTTGGGCCCCA................................................................................................... 23 1 2 1.00 2 1 1 0 0
................................................................................TTCGAGCCCCACGTTGCGCGCCA................................................................................................... 23 2 3 1.00 3 0 1 1 1
................................................................................TTCGTGCCCCACGTTGGGCGGCA................................................................................................... 23 1 2 1.00 2 0 2 0 0
................................................................................CTCGTGCCCCACGTTGGGCGCCA................................................................................................... 23 1 2 1.00 2 0 2 0 0
................................................................................TTCGTGCCCCACTTTGGGCGCCA................................................................................................... 23 1 2 1.00 2 1 1 0 0
..............AGCTCAGCGAGGAGTGTTATG....................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
.........AAAGCAGCTCAGCGAGGA............................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................AATCTGGATTTGCTCGGTGCGACA........................... 24 1 1 1.00 1 1 0 0 0
.................................................................................TCGAGCACCACGTTGGGCGCCA................................................................................................... 22 2 4 1.00 4 0 4 0 0
...............................................................................CTTCGAGACCCACGTTGGGCGCCA................................................................................................... 24 2 1 1.00 1 0 1 0 0
.................................................................................TCGTGCCCCACGTTGTGCGCCA................................................................................................... 22 1 2 1.00 2 1 0 1 0
.............................GTTATGCTAAAATTGAAAGC......................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0
.................................................................................TCGTGCCCCACGTTTGGCGCCA................................................................................................... 22 1 2 1.00 2 1 1 0 0
.................................................................................TCGAGCCCCACTTTGGGCGCCA................................................................................................... 22 2 4 1.00 4 0 3 1 0
................................................................................TTCGTGCCCCACGTTGGGCGCCT................................................................................................... 23 1 2 1.00 2 0 2 0 0
..........AAGCAGCTCAGCGAGGAGT............................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0
.................................................................................TCGTGCCCCACGTTGGTCGCCA................................................................................................... 22 1 2 1.00 2 0 2 0 0
.................................................................................TCGTGCCCCAAGTTGGGCGCCA................................................................................................... 22 1 2 1.00 2 0 2 0 0
...............................................................................CTTCGTGCCCCACGTTGGGCGCCA................................................................................................... 24 0 1 1.00 1 0 1 0 0
.............................................................................TCGTGAGTGCCCCACGTTGGGCGCCA................................................................................................... 26 3 3 1.00 3 3 0 0 0
.................................................................................TCGTGCCCCACGTTGGGCACCA................................................................................................... 22 1 2 1.00 2 1 0 0 1
...............................................................................CTTCGAGCCCCACGTTGGGCGCCA................................................................................................... 24 1 1 1.00 1 0 1 0 0
.........................GAGTGTTATGCTAAAATTGAAAGC......................................................................................................................................................... 24 1 1 1.00 1 1 0 0 0
.................................................................................TCGTGCCCCACGTTGGGAGCCA................................................................................................... 22 1 2 1.00 2 0 2 0 0
................................................................................TTCGTGCCCCACGGTGGGCGCCA................................................................................................... 23 1 2 1.00 2 0 2 0 0
.................................................................................TCGTGCTCCACGTTGGGCGCCA................................................................................................... 22 1 2 1.00 2 2 0 0 0
.......................................................................................................................................................AATCTGGATTTGCTCGGTGC............................... 20 1 1 1.00 1 1 0 0 0
...............................................................................................................................................................................GCTGTGGAGGATGCCCTGCAGGAC... 24 0 1 1.00 1 1 0 0 0
................................................................................TTCGTGCACCACGTTGGGCGCCA................................................................................................... 23 1 2 1.00 2 0 1 1 0
...........................................................................................................................................................................GACAGCTGTGGAGGATGCCCTGCA....... 24 0 1 1.00 1 1 0 0 0
................................................................................TTCGTGCCCTACGTTGGGCGCCA................................................................................................... 23 1 2 1.00 2 1 0 1 0
................................................................................TTCGTGCCCCACGTTTGGCGCCA................................................................................................... 23 1 2 1.00 2 1 0 0 1
................................................................................CTCGAGCCCCACGTTGGGCGCCA................................................................................................... 23 2 4 1.00 4 2 2 0 0
.......................................................................................................................................................AATCTGGATTTGCTCGGT................................. 18 1 1 1.00 1 1 0 0 0
................................................................................................................................................................TTGCTCGGTGCGACAGCTGTGGAG.................. 24 0 1 1.00 1 0 1 0 0
................................................................................TTCGTGCCCCACATTGGGCGCCA................................................................................................... 23 1 2 1.00 2 2 0 0 0
............................................................................GTGGTTCGGGCCCCACGTTGGGCGCCA................................................................................................... 27 3 2 1.00 2 2 0 0 0
.................................................................................................................................................................................TGTGGAGGATGCCCTGCAGGACGA. 24 0 1 1.00 1 1 0 0 0
................................................................................TTCGGGCTCCACGTTGGGCGCCA................................................................................................... 23 2 4 1.00 4 4 0 0 0
..........................................................................TCGTCGTTCGTGCCCCACGTTGGGCGCCA................................................................................................... 29 3 1 1.00 1 1 0 0 0
.............................................................................................................................................................................CAGCTGTGGAGGATGCCCTGCAGGA.... 25 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................TTTGCTCGGTGCGACAGCTGTGGAGGAT............... 28 0 1 1.00 1 0 0 0 1
.................................................................................TCGTCCCCCACGTTGGGCGCCA................................................................................................... 22 1 2 1.00 2 1 1 0 0
.............................................................................TCTTGGGTGCCCCACGTTGGGCGCCA................................................................................................... 26 3 2 1.00 2 2 0 0 0
................................................................................TTCGTGCCCCACGTTGGGCGCCC................................................................................................... 23 1 2 1.00 2 1 1 0 0
................................................................................TCCGTGCCCCACGTTGGGCGCCA................................................................................................... 23 1 3 1.00 3 2 1 0 0
.......CGAAAGCAGCTCAGCGAGGA............................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1
.................................................................................TCGAGACCCACGTTGGGCGCCA................................................................................................... 22 2 5 0.80 4 0 4 0 0
..............................................................................TCGTGGTGCCCCACGTTGGGCGCCA................................................................................................... 25 3 5 0.80 4 4 0 0 0
................................................................................TTCGGGCCCCACGTTGGGCGCC.................................................................................................... 22 1 4 0.75 3 0 3 0 0
.................................................................................TCGAGCCCCACGTTGGGAGCCA................................................................................................... 22 2 4 0.75 3 0 2 1 0
..................................................................................CGCGCCCCACGTTGGGCGCCA................................................................................................... 21 1 4 0.75 3 2 1 0 0
................................................................................TTCGGGCCCCACGTTGGGCG...................................................................................................... 20 1 16 0.69 11 0 11 0 0
................................................................................TTCGAGCCCCCCGTTGGGCGCCA................................................................................................... 23 2 3 0.67 2 1 1 0 0
.................................................................................TCGTGCCCCACGCTGGGCGCCA................................................................................................... 22 1 3 0.67 2 1 0 1 0
............................................................................GTGGTTCGAGCCCCACGTTGGGCGCCA................................................................................................... 27 3 3 0.67 2 2 0 0 0
................................................................................TTCGAGCCCCACGTTCGGCGCCA................................................................................................... 23 2 3 0.67 2 0 0 1 1
.................................................................................TCGAGCCCCACGTTGGGCGCC.................................................................................................... 21 1 6 0.67 4 0 4 0 0
................................................................................TTCGAGCACCACGTTGGGCGCCA................................................................................................... 23 2 3 0.67 2 0 2 0 0
................................................................................TTCGAGCCACACGTTGGGCGCCA................................................................................................... 23 2 3 0.67 2 2 0 0 0
................................................................................TTCGAGCCCCACGTCGGGCGCCA................................................................................................... 23 2 3 0.67 2 1 1 0 0
..................................................................................CGTGCCCCACGTTGGGCGCCG................................................................................................... 21 1 3 0.67 2 1 1 0 0
................................................................................TTCGAGCCCCACGTGGGGCGCCA................................................................................................... 23 2 3 0.67 2 0 2 0 0
................................................................................TTCGAGACCCACGTTGGGCGCCA................................................................................................... 23 2 3 0.67 2 0 2 0 0
................................................................................TTCGAGCCCCACGTTGGGCGCCAA.................................................................................................. 24 1 3 0.67 2 1 0 1 0
.............................................................................TCATGGGTGCCCCACGTTGGGCGCCA................................................................................................... 26 3 3 0.67 2 1 0 1 0
................................................................................TTCGAACCCCACGTTGGGCGCCA................................................................................................... 23 2 3 0.67 2 0 0 1 1
..............................................................................CGTTCGAGCCCCACGTTGGGCGCCA................................................................................................... 25 2 3 0.67 2 1 0 0 1
................................................................................TTCGAGCCCCACGTTTGGCGCCA................................................................................................... 23 2 3 0.67 2 0 2 0 0
................................................................................TTCGAGCCCCACGTTGGGTGCCA................................................................................................... 23 2 3 0.67 2 1 1 0 0
................................................................................TTCGGGCCCCACGTTGGGCGGCA................................................................................................... 23 2 5 0.60 3 0 3 0 0
.................................................................................TCGAGCCCCAGGTTGGGCGCCA................................................................................................... 22 2 4 0.50 2 0 2 0 0
................................................................................TTCGTGCCCCACGTTGGGCGCCAA.................................................................................................. 24 0 2 0.50 1 0 1 0 0
................................................................................TTCGTGCCCCACGTCGGGCGCCA................................................................................................... 23 1 2 0.50 1 1 0 0 0
......................................................................................................................................................CAATCTGGATTTGCTCGGT................................. 19 2 2 0.50 1 1 0 0 0
.................................................................................TCGTGCCCCACGTTGCGCGCCA................................................................................................... 22 1 2 0.50 1 1 0 0 0
................................................................................TTCGTGCCACACGTTGGGCGCCA................................................................................................... 23 1 2 0.50 1 0 1 0 0
...............................................................................ATTCGTGCCCCACGTTGGGCGCCA................................................................................................... 24 1 2 0.50 1 0 1 0 0
.................................................................................TCGCGCCCCAAGTTGGGAGCCA................................................................................................... 22 3 2 0.50 1 0 1 0 0
.................................................................................TCGAGCCCCACGTCGGGCGCCA................................................................................................... 22 2 4 0.50 2 1 0 0 1
.................................................................................TCGAGCCCCAAGTTGGGCGCCA................................................................................................... 22 2 4 0.50 2 0 1 1 0
................................................................................TTCGTGCCCCACGTTGGGCTCCA................................................................................................... 23 1 2 0.50 1 0 0 1 0
................................................................................TTCGGGTCCCACGTTGGGCGCCA................................................................................................... 23 2 4 0.50 2 2 0 0 0
.................................................................................TCGTGCCCCACGTTGGGCGCCG................................................................................................... 22 1 2 0.50 1 1 0 0 0
.................................................................................TCGTGCCCCACGTTGGGCG...................................................................................................... 19 0 2 0.50 1 0 1 0 0
................................................................................TTCGTGCCCCACGTTGCG........................................................................................................ 18 1 2 0.50 1 0 1 0 0
................................................................................CTCGTCCCCCACGTTGGGCGCCA................................................................................................... 23 2 2 0.50 1 1 0 0 0
................................................................................TTCGCGCCCTACGTTGGGCGCCA................................................................................................... 23 2 2 0.50 1 1 0 0 0
................................................................................TTCGTGCCCCACGTTGGGGGCCA................................................................................................... 23 1 2 0.50 1 0 1 0 0
................................................................................TTCGTGCTCCACGTTGGGCGCCA................................................................................................... 23 1 2 0.50 1 1 0 0 0
.................................................................................TCGTGCCCCACGTTGAGCGCCA................................................................................................... 22 1 2 0.50 1 0 1 0 0
............................................................................GTGGTTCGTGCCCCACGTTGGGCGCCA................................................................................................... 27 2 2 0.50 1 1 0 0 0
.................................................................................TCGGGCCCCACGTTGGGCGCCAGGC................................................................................................ 25 3 2 0.50 1 0 1 0 0
................................................................................TTCGTGCCTCACGTTGGGCGCCA................................................................................................... 23 1 2 0.50 1 1 0 0 0
................................................................................TTCGTGCCCCACGTTCGGCCCCA................................................................................................... 23 2 2 0.50 1 1 0 0 0
................................................................................TTCGGGCCCAACGTTGGGCGCCA................................................................................................... 23 2 4 0.50 2 1 0 1 0
.................................................................................TCGTGCCCCACGTTGGGCGCCT................................................................................................... 22 1 2 0.50 1 0 1 0 0
.................................................................................TCGTGCCCCACGTTGGGCGGCA................................................................................................... 22 1 2 0.50 1 0 1 0 0
................................................................................TTCGCGCCCCATGTTGGGCGCCA................................................................................................... 23 2 2 0.50 1 0 1 0 0
................................................................................TTCGTGCCCCCCGTTGGGCGCCA................................................................................................... 23 1 2 0.50 1 0 1 0 0
................................................................................TTCGTGCACCCCGTTGGGCGCCA................................................................................................... 23 2 2 0.50 1 0 1 0 0
................................................................................TTCGGGCCCCACGTTGCGCGCCA................................................................................................... 23 2 4 0.50 2 2 0 0 0
................................................................................TTCGTGCCCCACGTTGGACGCCA................................................................................................... 23 1 2 0.50 1 0 1 0 0
.................................................................................TCGTGCCCCACGTCGGGCGCCA................................................................................................... 22 1 2 0.50 1 0 1 0 0
.................................................................................TCGTGCCCCACGTTGGGGGCCT................................................................................................... 22 2 2 0.50 1 0 1 0 0
.................................................................................TCGTGCCCCACGTTGGGCGTCA................................................................................................... 22 1 2 0.50 1 1 0 0 0
................................................................................TTCGTGCCCCACGTTCGGCGCCA................................................................................................... 23 1 2 0.50 1 0 1 0 0
................................................................................TTCGCGACCCACGTTGGGCGCCA................................................................................................... 23 2 2 0.50 1 0 1 0 0
.................................................................................TCGGGCACCACGTTGGGCGCCA................................................................................................... 22 2 6 0.50 3 0 1 2 0
.............................................................................CCGTTCGTGCCCCACGTTGGGCGCCA................................................................................................... 26 2 2 0.50 1 1 0 0 0
.................................................................................TCGTGCCCCACTTTGGGCGCCA................................................................................................... 22 1 2 0.50 1 0 1 0 0
................................................................................GTCGTGCCCCACGTTGGGCGCCA................................................................................................... 23 1 2 0.50 1 0 1 0 0
................................................................................TTCGTGCCCCACGTTGGGTGCCA................................................................................................... 23 1 2 0.50 1 1 0 0 0
................................................................................TTCGTGCCCCACCTTGGGCGCCA................................................................................................... 23 1 2 0.50 1 1 0 0 0
................................................................................TTCGTACCCCACGTTGGGCGCCA................................................................................................... 23 1 2 0.50 1 1 0 0 0
................................................................................TTCGTGACCCACGTTGGGCGCCA................................................................................................... 23 1 2 0.50 1 0 1 0 0
................................................................................TTCGTGCCCCACGTTGGGCGCC.................................................................................................... 22 0 2 0.50 1 0 1 0 0
.................................................................................TCGTGCCCCACGTTAGGCGCCA................................................................................................... 22 1 2 0.50 1 1 0 0 0
................................................................................TTCGTGCTTCACGTTGGGCGCCA................................................................................................... 23 2 2 0.50 1 1 0 0 0
................................................................................TTCGTGCCCCACGTTGGGCGCCG................................................................................................... 23 1 2 0.50 1 0 1 0 0
................................................................................TTCGTGCCCCACGTTGGCCGCCA................................................................................................... 23 1 2 0.50 1 1 0 0 0
................................................................................TTCGTGCCCCACTTTGGGCTCCA................................................................................................... 23 2 2 0.50 1 0 1 0 0
.................................................................................TTGTGCCCCACGTTGGGCGCCA................................................................................................... 22 1 7 0.43 3 3 0 0 0
.................................................................................TCTTGCCCCACGTTGGGCGCCA................................................................................................... 22 1 5 0.40 2 0 2 0 0
................................................................................TTCGGGCCCCACGTTGGGCGCCC................................................................................................... 23 2 5 0.40 2 1 1 0 0
................................................................................TTCGGGCCCCACGTTGGG........................................................................................................ 18 1 18 0.39 7 0 7 0 0
................................................................................TTCGAGACCCACGTTGGCCGCCA................................................................................................... 23 3 3 0.33 1 0 1 0 0
.................................................................................TCGTGCCCCACGTTGGGCGCCAC.................................................................................................. 23 1 3 0.33 1 0 1 0 0
..............................................................................CGTTCGGGCCCCACGTTGGGCGCCA................................................................................................... 25 2 3 0.33 1 0 0 1 0
................................................................................TTCGAGCCTCACGTTGGGCGCCA................................................................................................... 23 2 3 0.33 1 1 0 0 0
................................................................................TTCGAGCCACACGTTGGGCTCCA................................................................................................... 23 3 3 0.33 1 0 1 0 0
................................................................................TTCGAGCTCCACGTTGGGCGCCA................................................................................................... 23 2 3 0.33 1 1 0 0 0
.................................................................................TCGGGCCCCACGTTGGGCGCCG................................................................................................... 22 2 6 0.33 2 0 2 0 0
................................................................................TTCGTGCCCCACGTTGGGGCCA.................................................................................................... 22 3 3 0.33 1 0 0 1 0
................................................................................TTCGAGCCCCACATTGGGCGCCA................................................................................................... 23 2 3 0.33 1 0 1 0 0
..................................................................................CGTGCCACACGTTGGGCGCCA................................................................................................... 21 1 3 0.33 1 0 1 0 0
.................................................................................TCGGGCCCCACGGTGGGCGCCA................................................................................................... 22 2 6 0.33 2 1 1 0 0
.................................................................................TCGTGCCCCACGTTGGGCGCCAG.................................................................................................. 23 1 3 0.33 1 0 1 0 0
................................................................................TTCGTGCCCCGCGTTGGGCGCCA................................................................................................... 23 1 3 0.33 1 1 0 0 0
................................................................................TTCGAGCCCTACGTTGGGCGCCA................................................................................................... 23 2 3 0.33 1 1 0 0 0
................................................................................TTCGAGCCCCACGTTGGGGGCCA................................................................................................... 23 2 3 0.33 1 0 1 0 0
...............................................................................TTTCGTGCCCCACGGTGGGCGCCA................................................................................................... 24 2 3 0.33 1 0 1 0 0
................................................................................TTCGAGCCCCACGTTGGTCGCCA................................................................................................... 23 2 3 0.33 1 1 0 0 0
............................................................................GTCGTGGGTGCCCCACGTTGG......................................................................................................... 21 3 3 0.33 1 0 1 0 0
................................................................................TTCGAGCCCCACGTTGGGCGTCA................................................................................................... 23 2 9 0.33 3 3 0 0 0
................................................................................TTCGAGCCCCACTTTGGGCGCCA................................................................................................... 23 2 3 0.33 1 1 0 0 0
..................................................................................CGTGCCCCACGTTGAGCGCCA................................................................................................... 21 1 3 0.33 1 0 0 1 0
................................................................................TTCTCGCCCCACGTTGGGCGCCA................................................................................................... 23 2 3 0.33 1 1 0 0 0
................................................................................TTCGAGCCCCAAGTTGGGCGCCA................................................................................................... 23 2 3 0.33 1 0 0 1 0
................................................................................TTCGTGCCCCACGTTGGGCCCA.................................................................................................... 22 2 3 0.33 1 1 0 0 0
................................................................................TTCGAGCCCCACGTTGTGCGCCA................................................................................................... 23 2 3 0.33 1 0 1 0 0
................................................................................TTCGTGCCCCACGTTGGGCGCAC................................................................................................... 23 2 3 0.33 1 1 0 0 0
..................................................................................CGTGCCCCATGTTGGGCGCCA................................................................................................... 21 1 3 0.33 1 1 0 0 0
..................................................................................CGTGCCCTACGTTGGGCGCCA................................................................................................... 21 1 3 0.33 1 1 0 0 0
..................................................................................CGTGCCCCAAGTTGGGCGCCA................................................................................................... 21 1 3 0.33 1 1 0 0 0
................................................................................TTCGAGTCCCACGTTTGGCGCCA................................................................................................... 23 3 3 0.33 1 0 1 0 0
................................................................................TTCGAGCCCCACGTTGGGCACCA................................................................................................... 23 2 3 0.33 1 0 0 1 0
.................................................................................TCGGGCCCCACGTTGGGCGCC.................................................................................................... 21 1 6 0.33 2 0 1 0 1
................................................................................TTCGAGCCCCACGTTGGGCTCCA................................................................................................... 23 2 3 0.33 1 0 1 0 0
..................................................................................CGTGCCCCACGTTGGGCGCC.................................................................................................... 20 0 3 0.33 1 1 0 0 0
..................................................................................CGTGCCTCACGTTGGGCGCCA................................................................................................... 21 1 3 0.33 1 1 0 0 0
................................................................................TTCGAGCCCCACGTTAGGCGCCA................................................................................................... 23 2 3 0.33 1 1 0 0 0
................................................................................TTCGAGCTCCATGTTGGGCGCCA................................................................................................... 23 3 3 0.33 1 1 0 0 0
................................................................................TTCGTGCCCCCCGTTGGGCGCTA................................................................................................... 23 2 3 0.33 1 0 1 0 0
.................................................................................TCGTGCCCCACGTTGGGCGCAA................................................................................................... 22 1 3 0.33 1 0 0 1 0
................................................................................TTCGAGCCCCACGTTGGCCGCCA................................................................................................... 23 2 3 0.33 1 0 1 0 0
................................................................................TTCGAGCCCCACTTTGGGCTCCA................................................................................................... 23 3 3 0.33 1 0 1 0 0
.................................................................................TCTCGCCCCACGTTGGGCGCCA................................................................................................... 22 2 7 0.29 2 1 1 0 0
.................................................................................TCTAGCCCCACGTTGGGCGCCA................................................................................................... 22 2 11 0.27 3 0 3 0 0
..................................................................................CGAGCCCCACGTTGGGCGCCAA.................................................................................................. 22 1 4 0.25 1 1 0 0 0
................................................................................TTCGAGCCCCACGTTGGGCGCCAG.................................................................................................. 24 2 4 0.25 1 0 1 0 0
................................................................................TTCGGGCCCCACGTTGGGAGCCA................................................................................................... 23 2 4 0.25 1 1 0 0 0
................................................................................TGGGTGCCCCACGTTGGGCGCC.................................................................................................... 22 2 8 0.25 2 1 0 1 0
.................................................................................TCGAGCCCCACGTTGGTCGCCA................................................................................................... 22 2 4 0.25 1 1 0 0 0
................................................................................TTCGGACCCCACGTTGGGCGCCA................................................................................................... 23 2 4 0.25 1 0 0 1 0
.................................................................................TCGAGCCCCACGTTGAGCGCCA................................................................................................... 22 2 4 0.25 1 0 1 0 0
.................................................................................TCGAGCCCTACGTTGGGCGCCA................................................................................................... 22 2 4 0.25 1 0 1 0 0
.................................................................................TCGAGCTCCACGTTGGGCGCCA................................................................................................... 22 2 4 0.25 1 1 0 0 0
................................................................................TTCGGGCCCCACGTTGGGCGCCG................................................................................................... 23 2 4 0.25 1 1 0 0 0
...................................................................................GTGCCCCACGTTGGACGCCA................................................................................................... 20 1 4 0.25 1 1 0 0 0
.................................................................................TGGTGCCCCACGTTGGGCGCCA................................................................................................... 22 1 4 0.25 1 0 1 0 0
.............................................................................TCGTGGGTGCCCCACGTTGGG........................................................................................................ 21 3 4 0.25 1 1 0 0 0
................................................................................TTCGACCCCCACGTTGGGCGCCA................................................................................................... 23 2 4 0.25 1 0 1 0 0
................................................................................TTCGGGCCCTACGTTGGGCGCCA................................................................................................... 23 2 4 0.25 1 1 0 0 0
.................................................................................TCGAGCCCCACGTTGGACGCCA................................................................................................... 22 2 4 0.25 1 0 0 0 1
................................................................................TTCGGGCCCCACGTTGTGCGCCA................................................................................................... 23 2 4 0.25 1 1 0 0 0
.................................................................................TCGAGCCTCACGTTGGGCGCCA................................................................................................... 22 2 4 0.25 1 0 1 0 0
................................................................................TTCGGGCACCCCGTTGGGCGCCA................................................................................................... 23 3 4 0.25 1 0 1 0 0
..................................................................................CGTGCCCCACGTTGGGCGCAA................................................................................................... 21 1 4 0.25 1 1 0 0 0
................................................................................TTCGGGCCCCACGCTGGGCGCCA................................................................................................... 23 2 4 0.25 1 1 0 0 0
.................................................................................TCGAGCCCCACGTTTGGCGCCA................................................................................................... 22 2 4 0.25 1 0 1 0 0
................................................................................TTCGGGCCCCACATTGGGCGCCA................................................................................................... 23 2 4 0.25 1 0 1 0 0
................................................................................TTCGGGCCCCACGTTCGGCGCCA................................................................................................... 23 2 4 0.25 1 0 0 1 0
.................................................................................TCGAGCCCCACGTTAGGCGCCA................................................................................................... 22 2 4 0.25 1 0 0 1 0
................................................................................TTCGGGCCCCAAGTTGGGCGCCA................................................................................................... 23 2 4 0.25 1 0 0 1 0
.................................................................................TCGAGTCCCACGTTGGGCGCCA................................................................................................... 22 2 4 0.25 1 1 0 0 0
.................................................................................TCGAGCCCCACGTTGGGGGCCA................................................................................................... 22 2 4 0.25 1 1 0 0 0
.................................................................................TCGAACCCCACGTTGGGCGCCA................................................................................................... 22 2 4 0.25 1 0 0 1 0
................................................................................TTCGGGCCCCACTTTGGGCGCCA................................................................................................... 23 2 4 0.25 1 0 1 0 0
................................................................................TTCGGGCCCCACGGTGGGCGCCA................................................................................................... 23 2 4 0.25 1 0 1 0 0
.................................................................................TCGGGCCCCACGTTGGGCG...................................................................................................... 19 1 18 0.22 4 0 4 0 0
.................................................................................TCGGGCCCCACGTTGGGCGCCAG.................................................................................................. 23 2 9 0.22 2 0 2 0 0
................................................................................TTCGGGCCCCACGTTGGGCGCCT................................................................................................... 23 2 5 0.20 1 1 0 0 0
................................................................................TTCTAGCCCCACGTTGGGCGCCA................................................................................................... 23 2 5 0.20 1 0 1 0 0
.................................................................................TCGACCCCCACGTTGGGCGCCA................................................................................................... 22 2 5 0.20 1 0 1 0 0
.................................................................................TCGAGCCCCACGTTGGGCGCCAG.................................................................................................. 23 2 5 0.20 1 0 1 0 0
.................................................................................TCGAGCCCCACGTTGGGCTCCA................................................................................................... 22 2 5 0.20 1 0 0 0 1
................................................................................TTCGGGCCCCACGTTGGGCTCCA................................................................................................... 23 2 5 0.20 1 0 1 0 0
................................................................................AGCGTGCCCCACGTTGGGCGCCA................................................................................................... 23 2 5 0.20 1 1 0 0 0
...................................................................................GTGACCCACGTTGGGCGCCA................................................................................................... 20 1 5 0.20 1 0 1 0 0
................................................................................TTCGGGCCCCACGTTGGCCGCCA................................................................................................... 23 2 5 0.20 1 1 0 0 0
...................................................................................GTGCCCCACGTTGGGCGC..................................................................................................... 18 0 5 0.20 1 0 0 1 0
...............................................................................TTCCGTGCCCCACGTTGGGCGCCA................................................................................................... 24 2 5 0.20 1 0 0 1 0
.................................................................................TCGAGCCCCACGCTGGGCGCCA................................................................................................... 22 2 5 0.20 1 1 0 0 0
................................................................................TTCGAGCCCCACGTTGTGCGCC.................................................................................................... 22 2 5 0.20 1 0 1 0 0
...............................................................................TTTCGAGCCCCACGTTGGGCGCCA................................................................................................... 24 2 5 0.20 1 0 1 0 0
................................................................................TTCGTGCCCCACGTTGGGCGA..................................................................................................... 21 1 11 0.18 2 0 2 0 0
...................................................................................GAGCCCCACGTTGGGCGCCAGG................................................................................................. 22 2 6 0.17 1 0 1 0 0
.................................................................................TCGGGCCCCACGTTTGGCGCCA................................................................................................... 22 2 6 0.17 1 0 1 0 0
.................................................................................TCGGGCCCCACGTTGGGGGCCA................................................................................................... 22 2 6 0.17 1 0 1 0 0
................................................................................TTCGGGCCCCGCGTTGGGCGCCA................................................................................................... 23 2 6 0.17 1 0 1 0 0
................................................................................TTCGGGCCCCACGTTGGGCTCCAG.................................................................................................. 24 3 6 0.17 1 0 1 0 0
...................................................................................GTGCCCCACGTTGGGTGCCA................................................................................................... 20 1 6 0.17 1 0 1 0 0
.................................................................................TCGGTCCCCACGTTGGGCGCCA................................................................................................... 22 2 6 0.17 1 0 0 1 0
.................................................................................TCGGGCCCCACGTTCGGCGCCA................................................................................................... 22 2 6 0.17 1 0 0 1 0
.................................................................................TCGGGCCACACGTTGGGCGCCA................................................................................................... 22 2 6 0.17 1 0 1 0 0
.................................................................................TCGGGGCCCACGTTGGGCGCCA................................................................................................... 22 2 6 0.17 1 1 0 0 0
...................................................................................GTGCCCCATGTTGGGCGCCA................................................................................................... 20 1 6 0.17 1 1 0 0 0
.................................................................................TCGGGCCCCACGTTGGGCGTCA................................................................................................... 22 2 6 0.17 1 0 1 0 0
.................................................................................TCGGGCCCCACGGTGGGCGCC.................................................................................................... 21 2 6 0.17 1 0 1 0 0
.................................................................................TCGGGCCCCTCGTTGTGCGCCA................................................................................................... 22 3 6 0.17 1 0 1 0 0
.................................................................................TCGGGCCCCACTTTGGGCGCCA................................................................................................... 22 2 6 0.17 1 0 1 0 0
.................................................................................TCGGGACCCACGTTGGGCGCCA................................................................................................... 22 2 6 0.17 1 0 1 0 0
.................................................................................TCGGGCCCCACCTTGGGCGCCA................................................................................................... 22 2 6 0.17 1 0 1 0 0
.................................................................................TCGGGCCCCACGTTGAGCGCCA................................................................................................... 22 2 6 0.17 1 0 1 0 0
.................................................................................TCGGGCCCCAAGTTGGGCGCCA................................................................................................... 22 2 6 0.17 1 1 0 0 0
.................................................................................TCGGGCCCCACGTTGGTCGCCA................................................................................................... 22 2 6 0.17 1 0 1 0 0
................................................................................TTCGAGCCCCACGTTGGGCGCCG................................................................................................... 23 2 6 0.17 1 1 0 0 0
...................................................................................GTGTCCCACGTTGGGCGCCA................................................................................................... 20 1 7 0.14 1 1 0 0 0
................................................................................TTCCAGCCCCACGTTGGGCGCCA................................................................................................... 23 2 7 0.14 1 0 1 0 0
..................................................................................CGAGCCCCACGTTGTGCGCCA................................................................................................... 21 2 7 0.14 1 0 0 1 0
..................................................................................CGAGCCTCACGTTGGGCGCCA................................................................................................... 21 2 7 0.14 1 1 0 0 0
................................................................................TCGGTCCCCCACGTTGGGCGCCA................................................................................................... 23 3 7 0.14 1 0 1 0 0
.................................................................................TCGGGCCCCACGTTGGGCGGCA................................................................................................... 22 2 7 0.14 1 0 1 0 0
.................................................................................TCGAGCCTCACGTTGGGCGCCG................................................................................................... 22 3 7 0.14 1 1 0 0 0
..................................................................................CGCGCCCCACGTTGTGCGCCA................................................................................................... 21 2 7 0.14 1 0 1 0 0
................................................................................CTCGGGCCCCACGTTGGGCGCCA................................................................................................... 23 2 8 0.13 1 1 0 0 0
..................................................................................CGAGCCCCATGTTGGGCGCCA................................................................................................... 21 2 8 0.13 1 1 0 0 0
.................................................................................TCTTCCCCCACGTTGGGCGCCA................................................................................................... 22 2 8 0.13 1 0 1 0 0
.................................................................................TCGGGCCCCACGTTGGGCGCTA................................................................................................... 22 2 8 0.13 1 0 0 1 0
..................................................................................CGATCCCCACGTTGGGCGCCA................................................................................................... 21 2 8 0.13 1 1 0 0 0
..............................................................................CGTGGGTGCCCCACGTTGGGCGC..................................................................................................... 23 3 9 0.11 1 1 0 0 0
................................................................................TTCGAGCCCCACGTTGGGCGCCAT.................................................................................................. 24 2 9 0.11 1 0 1 0 0
....................................................................................TCCCCCACGTTGGGCGCCA................................................................................................... 19 1 20 0.10 2 0 2 0 0
......................................................................................................................................................................AGTGCTACAGCAGTGGAGGA................ 20 3 10 0.10 1 0 0 1 0
..................................................................................CGAGCCCCGCGTTGGGCGCCA................................................................................................... 21 2 11 0.09 1 1 0 0 0
..................................................................................CCTGCCCCACGTTGGGCGCCA................................................................................................... 21 1 11 0.09 1 0 1 0 0
..................................................................................CGAGCCCCACGTTGGGCGCCG................................................................................................... 21 2 12 0.08 1 0 1 0 0
..................................................................................CGTGCCCCACGTTGGGCCA..................................................................................................... 19 2 14 0.07 1 1 0 0 0
................................................................................TTCGGGCTCCACGTTGGGC....................................................................................................... 19 2 18 0.06 1 1 0 0 0
................................................................................TTCGGGCCCCACGTTGGGC....................................................................................................... 19 1 18 0.06 1 0 1 0 0
................................................................................TTCGGGCCCCACGTTGGGA....................................................................................................... 19 2 19 0.05 1 0 1 0 0

Anti-sense strand reads

CTCTTAGCTTTTCGTCGAGTCGCTCCTCACAATACGATTTTACCTTTCGTCACTCATGGTCACTGTAAGGAGTGTTCAGGAAGCACGGGGTGCAACCCGCGGTTCAGATAATCAAAATCTTTGGTTGAATATGTAAAGACAGGAGACGTGTCTAGACCTAAACGAGCCACGCTGTCGACACCTCCTACGGGACGTCCTGCTG
**************************************************((((((((..((((......))))..)).(((.((((((......)))))).)))((((.......)))).....))))))......((((.......))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_17:126494-126695 + dse_898 GAGAATCGAAAAGCAGCTCAGCGAGGAGTGTTATGCTAAAATGGAAAGCAGTGAGTACCA--G-----TG-----------------------------------------------------------------ACATTCCTCACAAGTCCTTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCAAGTCTATTAGTTTTAGAAACCAA-------------------------------CT-TATA-CATTTCT--------------------------------------GTCCTCTGCACAGATCTGGATTTGCTCGGTGCGACAGCTGTGGAGGATGCCCTGCAGGACGAC
droSim2 x:15416192-15416392 + dsi_14227 GAGAATCGAA-AGCAGCTCAGCGAGGAGTGTTATGCCAAAATTGAAAGCAGTGAGTACCA--G-----TG-----------------------------------------------------------------ACATTCCTCACAAGTCCTTT--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCAAGTCTTTTAGTTTTAGAAACCAA-------------------------------CT-TATA-CATTTGT--------------------------------------GTCCTCTGCACAGATCTGGATTTGCTCGGTGCGACAGCTGTGGAGGATGCCCTGCAGGACGAC
dm3 chrX:16306717-16306898 + GAGAATCGAA-AGCAGCTCAGCGAGGAGTGTTATGCTAAAATTGAAAGCAGTGAGTACTA--G-----TG-----------------------------------------------------------------ACATTCCACATAAGTCCATG--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCAA-------------------CAA-------------------------------CT-TATG-CATTTCT--------------------------------------GTTCTTTGCACAGATCTTGATTTGCTCGGTGCAACAGCTGTGGAGGATGCCCTGCAGGACGAC
droEre2 scaffold_4690:10790906-10791058 - GAGAACCGGA-AGCAGCTCAGCGAGCAGTGCTATGCAAAGATTGAGAGCAGTGAGTATGA--G-----TG-----------------------------------------------------------------GCATTCCTGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCGAT------GG-------ATA---TTCAT---------------------------------------TTCTGTGCACAGATCTGGATTTGCTCGGTGCGACCGCTGTGGAGGATGCGCTGCAGGACGAC
droYak3 X:10426135-10426292 + GAGAATCGAA-AGCAGCTCAGCGAGGAGTGTTATGCCAAAATCGAAAGCAGTGAGTATTA--G-----TG-----------------------------------------------------------------C-----------------T------------------------------------------------------------------------------------------------------------------------------------TAGCTTTCAA-------------------AGGCCAC-------G----T-TATTTAATTTGT--------------------------------------GTTTCTTGCAAAGATCTGGATTTGCTGGGTGCGACAGCGGTGGAGGATGCCCTGCAGGACGAC
droEug1 scf7180000409008:1311260-1311420 - GAGAATCGAA-AGCAGCTCAGCGAGGAGTGTTACTCGAAAATCGAAAGCAGTGAGTATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTAATTTAAGTTTGGGT---ATATAACTAATG-------T-----TACCT--------------------------------------GTTCCTTTCCAAGATCTGGATCTTCTGGGTGCCACAGCTGTCGAGGACGCCCTGCAGGACGAC
droBia1 scf7180000302126:696385-696632 - GAGAACCGAA-AACAACTAAGCGAGGAGTGCTACGCGAAGATCGAAAGCAGTGAGTATTA--G-----TG-----------------------------------------------------------------AGGTTACATCTTAATTTTTTGTGTTTCTTTAAAATATATAAATG---------ACTGCACTTTCCAAAA---------------------------------------------------------AGCCCGCGTTGGGCGCCAATTCT-----------------------------------------------------T--------GTATGTTCCTTCTTGTTTTG-ATCTGATATGACATCATATGTTCTCTCCAAAGATCTGGACCTGCTGGGAGCGACAGCTGTAGAGGATGCCCTGCAAGACGAC
droTak1 scf7180000415703:23540-23789 + GAGAGTCGAA-AACAGCTCAGCGAGGAGTGCTACGCGAAGATCGAAAGCAGTGAGTACTA--T-----AGAAATATAAATTTAATTTAATCCAAATATGATAACTTTATGCCAAAGCTCTCATTGAAATTGTCCCACATTGTTGACTAGTCCTTG--------------------------------------------------------------------------------------------------------TTCTCCCCCT---------------------------------------------------------------------------------------TCATGTTTTGTAATAAATATCACATAATATGTTCTCTCCAAAGATCTTGACCTGCTGGGAGCGACAGCTGTAGAGGATGCCCTGCAAGACGAT
droEle1 scf7180000491242:106895-106962 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCT---------------------------------------ATTCCCCCAAAGATCTTGACCTGCTGGGAGCGACAGCTGTGGAGGACGCACTGCAGGACGAC
droRho1 scf7180000769281:700-767 + A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCT---------------------------------------GTTTCCCCAAAGATCTCGACCTGCTGGGAGCGACGGCTGTAGAGGATGCACTGCAGGACGAC
droFic1 scf7180000454073:55644-55700 + GAGAACCGGA-AGCAGCTCAGCGAGGAGTGCTACGCCAAGATCGAAAGCAGTAAGTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302441:199775-199995 - GAGAACCGGA-AGCAACTCAGTGAGGAGTGCTATGCCAAGATCGAAAGCAGTAAGTCTT------------------------------------------------------------------------------------TATAATT---------------------TATAATTATATATTTTCTTTAAATTTTTTAAACAGTTCCTATAAATTTTGTATAAACTTTCTATAAACTTTCTATAAATTTTCTCTTTG-----------------------------------------------------------------------------------TTTCC---------------------------------------CTCTCCTCTCAGATCTTGACCTCTTGGGCGCCACAGCTGTGGAGGATGCCCTGCAGGATGAT
droAna3 scaffold_13137:586364-586554 + GAGAATCGAA-AGCAGCTGAGCGAGGAATGTTATGCGAGAATCGAATGCAGTAAGTCTTATATTTCCA----------------------------------------------TGATGTATTTTAACTGTCCGTT---------------CGTC--------------------------------------------------------------------------------------------------------A---------------------TCTTTTTGTTTTGGGTACTTA-------------------------------CTCTTTT-CATTTAT---------------------------------------TCCTTCCCTTAGATCTGGACCTTCTGGGTGCGACGGCCGTGGAAGATGCCTTGCAGGACGAC
droBip1 scf7180000396540:56604-56809 + GAAAATCGAA-AGCAGCTCAGCGAGGAATGCTATGCGAAAATTGAATGCAGTAAGTCTTATATTTTTA----------------------------------------------AGATATATTTTTAATAATCATT---------------CTTT--------------------------------------------------------------------------------------------------------GTTTTTTAGTCCTGATTTGAA--------------------------------------CAATTGTTTATCTTATCTTTTC-AATTTAT--------------------------------------TTTTCCCCTTTAGATCTAGACCTTCTGGGTGCTACAGCAGTGGAAGACGCCTTGCAGGATGAC
dp5 XL_group1e:9929834-9930006 + GAAAACCGAA-AGCAGCTCAGCGAAGAGTGCTACTCGAAGATTGAGAGCAGTAAGTGGAACAATCCAA----------------------------------------------------------------------TCAGTCATGA----------------------------------------------------------------------------------------------------------------------------------------ATTAGACAGAG-----------------------AAAGGGCCAACG-------ATA-TATCTGC--------------------------------------AACTTCTTTATAGATCTCGATCTGCTCGGAGCAACGGCTGTGGAGGATGCTCTGCAGGATGAT
droPer2 scaffold_22:305209-305381 - GAAAACCGAA-AGCAGCTCAGCGAAGAGTGCTACTCGAAGATTGAAAGCAGTAAGTGAAACAA-----TC-----------------------------------------------------------------AAATCAGTCATGA----------------------------------------------------------------------------------------------------------------------------------------ATTAGACAGAG-----------------------AAAGGGCCAACG-------ATA-TATCTGC--------------------------------------AACTTCTTTATAGATCTCGATCTGCTCGGAGCAACGGCTGTGGAGGATGCTCTTCAGGATGAT
droWil2 scf2_1100000004909:6446543-6446699 - GAAAATCGCA-AACAATTGAGCGAGGAATGTTATTCGAAAATCGAAAGCAGTAAGTAAAC--G-----TT-----------------------------------------------------------------C-----------------TT--------------------------------------------------------------------------------------------------------TTGTCTCACTCTA-------------------------------------------AA-CCATC-----AA-------TCA---CTCTC---------------------------------------GTCTCTTTAAAGATCTTGATCTACTGGGAGCCACAGCTGTAGAGGATGCCCTGCAGGACGAT
droVir3 scaffold_12970:7576567-7576728 - GAAAATCGAA-AGCAACTTTGCGAGGAATGCTATTCAAAGATTGAAAGCGGTAAGTGGA-CAATAT--TG-----------------------------------------------------------------A-----------------A------------------------------------------------------------------------------------------------------------------------------------TAGCAA-----------------------ATGCAATGCCCAACG-------CTC-TATTCGC--------------------------------------CATTTCTTTGCAGACCTGGATCTGCTGGGCGCAACAGCTGTGGAGGATGCACTGCAGGATGAT
droMoj3 scaffold_6482:2136605-2136756 + GAGAATCGCA-AGCAGCTCTGCGTGGAATGCTATTCTAAGATTGAGAGCAGTAAGTGGA-CAA-----TG-----------------------------------------------------------------TTATC--TGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAAA------------CT-ACTA-TATTTA-----------------------------------------TATTTTGACAGACCTCGACTTACTTGGCGCAACGGCTGTCGAGGATGCGCTGCAGGATGAT
droGri2 scaffold_15203:7035129-7035299 + GAAAATCGAA-AGCAATTGAGCGAGGAATGCTATTCAAAGATTGAAAGTGGTTAGTGTA-CAATACAA----------------------------------------------TAATGTAATACAAT-------------------------------------------------------------------------------------------------------------------------------------AATTGATGTTTGGAATTAATTGT-----------------------------------------------------T-------TGA------------------------------A-------ATCATTCGATTAGATCTCGACTTGCTGGGCGCAACAGCTGTGGAGGATGCACTCCAGGATGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GAGAATCGAAAAGCAGCTCAGCGAGGAGTGTTATGCTAAAATGGAAAGCAGTGAGTACCA--G-----TG-----------------------------------------------------------------ACATTCCTCACAAGTCCTTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCAAGTCTATTAGTTTTAGAAACCAA-------------------------------CT-TATA-CATTTCT--------------------------------------GTCCTCTGCACAGATCTGGATTTGCTCGGTGCGACAGCTGTGGAGGATGCCCTGCAGGACGACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCA..........................................................................................................................................................................232422.508454711430555
.........................................................................................................................................................TC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCA..........................................................................................................................................................................222400.0080048522193100
..........................................................................................................................................................C--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCA..........................................................................................................................................................................21372.672185441546
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGCCA..........................................................................................................................................................................20425.001001527112
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGG...............................................................................................................................................................................1828.501716010
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCG.............................................................................................................................................................................2027.001414000
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGC..............................................................................................................................................................................1923.5076010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGAGGATGCCCTGCA.......1912.0020020
.........................................................................................................................................................TC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCC...........................................................................................................................................................................2121.5033000
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGC............................................................................................................................................................................2121.5032010
....................................................................................................................................................................................................................................................................TGCCCCACGTTGGGCGCCA..........................................................................................................................................................................19191.112140161
..............AGCTCAGCGAGGAGTGTTATG..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........AAAGCAGCTCAGCGAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCT..........................................................................................................................................................................2321.0022000
..........AAGCAGCTCAGCGAGGAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
.......................................................................................................................................................CTTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCA..........................................................................................................................................................................2411.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGAGGATGCCCTGCAGGAC...2411.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................GACAGCTGTGGAGGATGCCCTGCA.......2411.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCGGTGCGACAGCTGTGGAG..................2411.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAGGATGCCCTGCAGGACGA.2411.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGTGGAGGATGCCCTGCAGGA....2511.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCTCGGTGCGACAGCTGTGGAGGAT...............2811.0010100
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCC..........................................................................................................................................................................2321.0021010
..........................................................................................................................................................C--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCG..........................................................................................................................................................................2130.6721010
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCAA.........................................................................................................................................................................2420.5011000
.........................................................................................................................................................TC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCG..........................................................................................................................................................................2220.5010010
.........................................................................................................................................................TC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCG.............................................................................................................................................................................1920.5011000
.........................................................................................................................................................TC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCT..........................................................................................................................................................................2220.5011000
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCC...........................................................................................................................................................................2220.5011000
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCG..........................................................................................................................................................................2320.5011000
.........................................................................................................................................................TC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCAC.........................................................................................................................................................................2330.3311000
.........................................................................................................................................................TC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCAG.........................................................................................................................................................................2330.3311000
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCAC..........................................................................................................................................................................2330.3310010
..........................................................................................................................................................C--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCC...........................................................................................................................................................................2030.3310010
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGC............................................................................................................................................................................1850.2010001
........................................................................................................................................................TTC--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGA............................................................................................................................................................................21110.1822000
..........................................................................................................................................................C--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCCA............................................................................................................................................................................19140.0710010
droSim2
GAGAATCGAA-AGCAGCTCAGCGAGGAGTGTTATGCCAAAATTGAAAGCAGTGAGTACCA--G-----TG-----------------------------------------------------------------ACATTCCTCACAAGTCCTTT--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCAAGTCTTTTAGTTTTAGAAACCAA-------------------------------CT-TATA-CATTTGT--------------------------------------GTCCTCTGCACAGATCTGGATTTGCTCGGTGCGACAGCTGTGGAGGATGCCCTGCAGGACGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGCCA..........................................................................................................................................................................20325.6777540200140061000000
......................................................................................................................................................................................................................................................................CCCCACGTTGGGCGCCA..........................................................................................................................................................................172011.752350000007548118790014000
........................................................................................................................................................................................................................................................................CCACGTTGGGCGCCA..........................................................................................................................................................................152011.00220000000590033128000000
.......................................................................................................................................................................................................................................................................CCCACGTTGGGCGCCA..........................................................................................................................................................................16202.00400000002900000011000
.....................................................................................................................................................................................................................................................................GCCCCACGTTGGGCGCCA..........................................................................................................................................................................18201.7034000000000034000000
....................................................................................................................................................................................................................................................................TGCCCCACGTTGGGCGCCA..........................................................................................................................................................................19191.2624701100000015000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGTGGAGGATGCCCT..........1811.00100100000000000000
..................CAGCGAGGAGTGTTATGCCAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACAGCTGTGGAGGATGC.............2011.00100000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCGGTGCGACAGCTGTGGAGGAT...............2711.00100000000000100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCGGTGCGACAGCTGTGG....................2211.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATTTGCTCGGTGCGAC............................2011.00101000000000000000
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGG...............................................................................................................................................................................1550.60300000030000000000
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGCC...........................................................................................................................................................................1940.50200000000002000000
......................................................................................................................................................................................................................................................................CCCCACGTTGGGCGCCAA.........................................................................................................................................................................18200.30640000011000000000
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCG.............................................................................................................................................................................1750.20100000000001000000
......................................................................................................................................................................................................................................................................CCCCACGTTGGGCGCC...........................................................................................................................................................................16200.15300000010002000000
........................................................................................................................................................................................................................................................................CCACGTTGGGCGCCAA.........................................................................................................................................................................16200.05100000010000000000
.......................................................................................................................................................................................................................................................................CCCACGTTGGGCGCC...........................................................................................................................................................................15200.05100000000010000000
....................................................................................................................................................................................................................................................................TGCCCCACGTTGGGCG.............................................................................................................................................................................16200.05100000000100000000
.....................................................................................................................................................................................................................................................................GCCCCACGTTGGGCGCCG..........................................................................................................................................................................18200.05101000000000000000
.........................................................................................................................................................................................................................................................................CACGTTGGGCGCCAA.........................................................................................................................................................................15200.05100000010000000000
dm3
GAGAATCGAA-AGCAGCTCAGCGAGGAGTGTTATGCTAAAATTGAAAGCAGTGAGTACTA--G-----TG-----------------------------------------------------------------ACATTCCACATAAGTCCATG--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCAA-------------------CAA-------------------------------CT-TATG-CATTTCT--------------------------------------GTTCTTTGCACAGATCTTGATTTGCTCGGTGCAACAGCTGTGGAGGATGCCCTGCAGGACGACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGCCA..........................................................................................................................................................................205201.4010070000001000001300000000000000000000000000001000000010000000000000000000000000057474637250941338320673431881431211120933214112113271410145010000000000000000000000520002102000000000000000003701100010010000004000110010000015000009600000000022222410720121000000000000100000000000003102030023010181000000000000000200000200000000000000300000100000000001012000
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGCC...........................................................................................................................................................................195151.807590000000000000000000000000000000000000000000000000000000000000000000000000000018020715310700000016000000000000070167212951100003000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000031000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGCCCCACGTTGGGCGCCA..........................................................................................................................................................................192060.60121200000000000000000000001000000100000000000000000000000000000000000000000000000191516035200287969131503007512342731325756255046126010131446000000000000100000000000000000101000000000000000000000100301100000000000000000000400000000000011000001000000000000000000000000000000000000000000000000000000000000010110000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGC............................................................................................................................................................................18655.83335000000000000000000000000000000000000000000000000000000000000000000000000000001009578540000000000000000000000010310100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGCCCCACGTTGGGCGCC...........................................................................................................................................................................18207.95159000000000000000000000000000000000000000000000000000000000000000000000000000007007850000000000000000000000030020000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CCCCACGTTGGGCGCCA..........................................................................................................................................................................17206.6013200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000001401210103000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................GCCCCACGTTGGGCGCCA..........................................................................................................................................................................18203.15630000000000000000000000000000000000000000000000000000000000000000000000000000000000000000221000000000000000150014000000000000000000000000000000000000200000000000000000000000000050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000210000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGCCG..........................................................................................................................................................................2052.40120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001003001000200020000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAGGATGCCCTGCA.......1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000
.........................................................................................................................................................TG--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCA..........................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTGTGGAGGATGCCCTGC........2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAGGATGCCCTGCAGGACGA.2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000
......................................................................................................................................................................................................................................................................CCCCACGTTGGGCGCCAA-------------------......................................................................................................................................................18201.553100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000040000170000000010000000000200000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................CCCCACGTTGGGCGCCAA-------------------C.....................................................................................................................................................1931.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTGTGGAGGATG..............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........AGCAGCTCAGCGAGGAGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................ATGCTAAAATTGAAAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................TGCAACAGCTGTGGAGGATGC.............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................A--G-----TG-----------------------------------------------------------------ACATTCCACATAAGTCCATG--------------------------------------------------------------------------------------------------------GTGC..........................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AGCGAGGAGTGTTATGCT............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCTGTGGAGGAT...............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGATGCCCTGCAGGACGAC2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................GTTATGCTAAAATTGAAA..................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGATGCCCTGCAG......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............GCAGCTCAGCGAGGAGTGTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CCACGTTGGGCGCCAA-------------------C.....................................................................................................................................................1741.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGATGCCCTGCAGGAC...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CAGCGAGGAGTGTTATGC.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CACGTTGGGCGCCAA-------------------C.....................................................................................................................................................1651.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGATGCCCTGCAGGAA...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................G--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGC............................................................................................................................................................................1921.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGTGGAGGATGCCCTGC........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGATGCCCTGCAGGAC...1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCGGTGCAACAGCTGTGGA...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGGAGGATGCCCTGCA.......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCTGTGGAGGATGCCCTGC........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCTGTGGAGGATGCC............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGCCC..........................................................................................................................................................................2050.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGCCCCACGTTGGGCGCCAA-------------------......................................................................................................................................................20120.6780000000000000000000000000000000000000000000000000000000000000000000000000000022300000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................ACGTTGGGCGCCAA-------------------C.....................................................................................................................................................1560.6740000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGCCT..........................................................................................................................................................................2050.6030000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................G--------------------------------------------------------------------------------------------------------GTGCCCCACGTTGGGCGCCA..........................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CCCACGTTGGGCGCCAA-------------------......................................................................................................................................................17200.501000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
......................................................................................................................................................................................................................................................................CCCCACGTTGGGCGCCC..........................................................................................................................................................................17200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................................................................................TGCCCCACGTTGGGCGCCG..........................................................................................................................................................................19200.4080000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100001010000020000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGCCCCACGTTGGGCGCA...........................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000020210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................CCCACGTTGGGCGCCAA-------------------C.....................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................GTGCCCCACGTTGGGCGG............................................................................................................................................................................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GAGAACCGGA-AGCAGCTCAGCGAGCAGTGCTATGCAAAGATTGAGAGCAGTGAGTATGA--G-----TG-----------------------------------------------------------------GCATTCCTGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGCGAT------GG-------ATA---TTCAT---------------------------------------TTCTGTGCACAGATCTGGATTTGCTCGGTGCGACCGCTGTGGAGGATGCGCTGCAGGACGACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............................TGCTATGCAAAGATTGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020001010
...AACCGGA-AGCAGCTCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100
...................AGCGAGCAGTGCTATGCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010000
..........................AGTGCTATGCAAAGATTGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGAGGATGCGCTGCAGGA....2311.0010000100
..................CAGCGAGCAGTGCTATGCAAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGTGCGACCGCTGTGGA...................2011.0010000010
..........................AGTGCTATGCAAAGATTGAGAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.............................GCTATGCAAAGATTGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
...........................GTGCTATGCAAAGATTGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.............................GCTATGCAAAGATTGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000
.........................CAGTGCTATGCAAAGATTGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCGCTGTGGAGGATGCGCTG.........2311.0010000100
..............................CTATGCAAAGATTGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..GAACCGGA-AGCAGCTCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGATGCGCTGCAGGAC...2111.0010000100
droYak3
GAGAATCGAA-AGCAGCTCAGCGAGGAGTGTTATGCCAAAATCGAAAGCAGTGAGTATTA--G-----TG-----------------------------------------------------------------C-----------------T------------------------------------------------------------------------------------------------------------------------------------TAGCTTTCAA-------------------AGGCCAC-------G----T-TATTTAATTTGT--------------------------------------GTTTCTTGCAAAGATCTGGATTTGCTGGGTGCGACAGCGGTGGAGGATGCCCTGCAGGACGACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGGATGCCCTGCAGGAC...2212.00200200000000
.................TCAGCGAGGAGTGTTATGCC............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................CTGGATTTGCTGGGTGCGACAGCGGT......................2611.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCGGTGGAGGATGCCCTGC........2111.00101000000000
...................AGCGAGGAGTGTTATGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGGAGGATGCCCTGCAGGACGAC2511.00101000000000
.............................GTTATGCCAAAATCGAAAG.................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.............................GTTATGCCAAAATCGAAAGC................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
droEug1
GAGAATCGAA-AGCAGCTCAGCGAGGAGTGTTACTCGAAAATCGAAAGCAGTGAGTATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACTAATTTAAGTTTGGGT---ATATAACTAATG-------T-----TACCT--------------------------------------GTTCCTTTCCAAGATCTGGATCTTCTGGGTGCCACAGCTGTCGAGGACGCCCTGCAGGACGACSizeHit CountTotal NormTotal
No Reads
droBia1
GAGAACCGAA-AACAACTAAGCGAGGAGTGCTACGCGAAGATCGAAAGCAGTGAGTATTA--G-----TG-----------------------------------------------------------------AGGTTACATCTTAATTTTTTGTGTTTCTTTAAAATATATAAATG---------ACTGCACTTTCCAAAA---------------------------------------------------------AGCCCGCGTTGGGCGCCAATTCT-----------------------------------------------------T--------GTATGTTCCTTCTTGTTTTG-ATCTGATATGACATCATATGTTCTCTCCAAAGATCTGGACCTGCTGGGAGCGACAGCTGTAGAGGATGCCCTGCAAGACGACSizeHit CountTotal NormTotal
No Reads
droTak1
GAGAGTCGAA-AACAGCTCAGCGAGGAGTGCTACGCGAAGATCGAAAGCAGTGAGTACTA--T-----AGAAATATAAATTTAATTTAATCCAAATATGATAACTTTATGCCAAAGCTCTCATTGAAATTGTCCCACATTGTTGACTAGTCCTTG--------------------------------------------------------------------------------------------------------TTCTCCCCCT---------------------------------------------------------------------------------------TCATGTTTTGTAATAAATATCACATAATATGTTCTCTCCAAAGATCTTGACCTGCTGGGAGCGACAGCTGTAGAGGATGCCCTGCAAGACGATSizeHit CountTotal NormTotal
No Reads
droEle1
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCT---------------------------------------ATTCCCCCAAAGATCTTGACCTGCTGGGAGCGACAGCTGTGGAGGACGCACTGCAGGACGACSizeHit CountTotal NormTotal
No Reads
droRho1
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCT---------------------------------------GTTTCCCCAAAGATCTCGACCTGCTGGGAGCGACGGCTGTAGAGGATGCACTGCAGGACGACSizeHit CountTotal NormTotal
No Reads
droFic1
GAGAACCGGA-AGCAGCTCAGCGAGGAGTGCTACGCCAAGATCGAAAGCAGTAAGTAC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GAGAACCGGA-AGCAACTCAGTGAGGAGTGCTATGCCAAGATCGAAAGCAGTAAGTCTT------------------------------------------------------------------------------------TATAATT---------------------TATAATTATATATTTTCTTTAAATTTTTTAAACAGTTCCTATAAATTTTGTATAAACTTTCTATAAACTTTCTATAAATTTTCTCTTTG-----------------------------------------------------------------------------------TTTCC---------------------------------------CTCTCCTCTCAGATCTTGACCTCTTGGGCGCCACAGCTGTGGAGGATGCCCTGCAGGATGATSizeHit CountTotal NormTotal
No Reads
droAna3
GAGAATCGAA-AGCAGCTGAGCGAGGAATGTTATGCGAGAATCGAATGCAGTAAGTCTTATATTTCCA----------------------------------------------TGATGTATTTTAACTGTCCGTT---------------CGTC--------------------------------------------------------------------------------------------------------A---------------------TCTTTTTGTTTTGGGTACTTA-------------------------------CTCTTTT-CATTTAT---------------------------------------TCCTTCCCTTAGATCTGGACCTTCTGGGTGCGACGGCCGTGGAAGATGCCTTGCAGGACGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......CGAA-AGCAGCTGAGCGAGGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002100010
....................GCGAGGAATGTTATGCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................1912.002001010
..................GAGCGAGGAATGTTATGCGAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2412.002110000
......CGAA-AGCAGCTGAGCGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....ATCGAA-AGCAGCTGAGCGAG........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTGGAAGATGCCTTGC........2011.001100000
...........................ATGTTATGCGAGAATCGAATGC................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
....................GCGAGGAATGTTATGCGAGAAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTGGAAGATGCCTTGCAGGA....2411.001010000
..GAATCGAA-AGCAGCTGAGCGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTGGAAGATGCCTTGCAGGAC...2511.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGGAAGATGCCTTGCAGGAC...2211.001000010
......CGAA-AGCAGCTGAGCGAGGA......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCGTGGAAGATGCCTTGCAG......2211.001010000
...............GCTGAGCGAGGAATGTTATGCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
droBip1
GAAAATCGAA-AGCAGCTCAGCGAGGAATGCTATGCGAAAATTGAATGCAGTAAGTCTTATATTTTTA----------------------------------------------AGATATATTTTTAATAATCATT---------------CTTT--------------------------------------------------------------------------------------------------------GTTTTTTAGTCCTGATTTGAA--------------------------------------CAATTGTTTATCTTATCTTTTC-AATTTAT--------------------------------------TTTTCCCCTTTAGATCTAGACCTTCTGGGTGCTACAGCAGTGGAAGACGCCTTGCAGGATGACSizeHit CountTotal NormTotal
No Reads
dp5
GAAAACCGAA-AGCAGCTCAGCGAAGAGTGCTACTCGAAGATTGAGAGCAGTAAGTGGAACAATCCAA----------------------------------------------------------------------TCAGTCATGA----------------------------------------------------------------------------------------------------------------------------------------ATTAGACAGAG-----------------------AAAGGGCCAACG-------ATA-TATCTGC--------------------------------------AACTTCTTTATAGATCTCGATCTGCTCGGAGCAACGGCTGTGGAGGATGCTCTGCAGGATGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCGGAGCAACGGCTGTGGA...................2314.0040400000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCGGAGCAACGGCTGTGG....................2211.0010100000000
...................AGCGAAGAGTGCTACTCGAAGATTG.....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
...........................GTGCTACTCGAAGATTGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.................TCAGCGAAGAGTGCTACTCGAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCTGTGGAGGATGCTCTGCAG......2611.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCTCGGAGCAACGGCTGTGGA...................2611.0010010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCTCGGAGCAACGGCT........................1911.0010010000000
............................TGCTACTCGAAGATTGAGAG.................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
..AAACCGAA-AGCAGCTCAGCGAAGA......................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGGAGGATGCTCTGCAGG.....2011.0010100000000
...........................GTGCTACTCGAAGATTGA....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000100000
...........................GTGCTACTCGAAGATTGAGAGC................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGTGGAGGATGCTCTGCAG......2211.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCGGAGCAACGGCTGT......................1911.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCTGTGGAGGATGCTCTGCAGG.....2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGAGGATGCTCTGCAGGAT...2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGATGCTCTGCAGGATGA.2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCTCGGAGCAACGGCTGTG.....................2411.0010000001000
droPer2
GAAAACCGAA-AGCAGCTCAGCGAAGAGTGCTACTCGAAGATTGAAAGCAGTAAGTGAAACAA-----TC-----------------------------------------------------------------AAATCAGTCATGA----------------------------------------------------------------------------------------------------------------------------------------ATTAGACAGAG-----------------------AAAGGGCCAACG-------ATA-TATCTGC--------------------------------------AACTTCTTTATAGATCTCGATCTGCTCGGAGCAACGGCTGTGGAGGATGCTCTTCAGGATGATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGGAGCAACGGCTGG......................1812.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGTGGAGGATGCTCTTCAGGA....2311.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGGAGCAACGGCTGTGGA...................2111.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................CGATCTGCTCGGAGCAACGGCT........................2211.001100000
..............AGCTCAGCGAAGAGTGCTACTCGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
................CTCAGCGAAGAGTGCTACTCGAAGA........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCTGTGGAGGATGCT............1911.001010000
...............GCTCAGCGAAGAGTGCTACTCGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
...........................GTGCTACTCGAAGATTGAAAGC................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
droWil2
GAAAATCGCA-AACAATTGAGCGAGGAATGTTATTCGAAAATCGAAAGCAGTAAGTAAAC--G-----TT-----------------------------------------------------------------C-----------------TT--------------------------------------------------------------------------------------------------------TTGTCTCACTCTA-------------------------------------------AA-CCATC-----AA-------TCA---CTCTC---------------------------------------GTCTCTTTAAAGATCTTGATCTACTGGGAGCCACAGCTGTAGAGGATGCCCTGCAGGACGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........A-AACAATTGAGCGAGGAATGTTATTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200110
................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACAGCTGTAGAGGAT...............1812.00200020
................TTGAGCGAGGAATGTTATTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...........AACAATTGAGCGAGGAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCTACTGGGAGCCACAGCT........................2411.00100010
.............CAATTGAGCGAGGAATGTTATT..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
............................................................................................................................................................................................................................................................................................................................A-CCATC-----AA-------TCA---CTCTC---------------------------------------GTCTCTTTA.....................................................2511.00100001
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGGGAGCCACAGCTGTAGA...................2311.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................CTTGATCTACTGGGAGCCACAGCTGT......................2611.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................TACTGGGAGCCACAGCTGT......................1911.00100010
..............AATTGAGCGAGGAATGTTATTC.............................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCTGTAGAGGATGCCCTGCA.......2411.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................GATCTACTGGGAGCCACAG..........................1911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAGCCACAGCTGTAGAGGATGCC............2711.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................CTACTGGGAGCCACAGCTGTAGAGGAT...............2711.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................GATCTACTGGGAGCCACAGCTGTAGA...................2611.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGCTGTAGAGGATGCCCT..........2111.00100010
......CGCA-AACAATTGAGCGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGAGCCACAGCTGTAGA...................2011.00100010
............................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCCACAGCTGTAGAGGATGC.............2411.00100010
.............................GTTATTCGAAAATCGAAAGC................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
droVir3
GAAAATCGAA-AGCAACTTTGCGAGGAATGCTATTCAAAGATTGAAAGCGGTAAGTGGA-CAATAT--TG-----------------------------------------------------------------A-----------------A------------------------------------------------------------------------------------------------------------------------------------TAGCAA-----------------------ATGCAATGCCCAACG-------CTC-TATTCGC--------------------------------------CATTTCTTTGCAGACCTGGATCTGCTGGGCGCAACAGCTGTGGAGGATGCACTGCAGGATGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......CGAA-AGCAACTTTGCGAGGAATGCTATTCAAAGATTGAAAGC................................................................................................................................................................................................................................................................................................................................................................................................................4211.001000000000000000000000000000000000000000000000000000000000010000
....ATCGAA-AGCAACTTTGCGAGGAATGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTGTGGAGGATGCACTGCAG......2311.001000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................GACCTGGATCTGCTGGGC.................................1811.001000000000000000000000000000001000000000000000000000000000000000
......CGAA-AGCAACTTTGCGAGGAATG...................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................GATCTGCTGGGCGCAACAGCT........................2111.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
GAGAATCGCA-AGCAGCTCTGCGTGGAATGCTATTCTAAGATTGAGAGCAGTAAGTGGA-CAA-----TG-----------------------------------------------------------------TTATC--TGATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAAA------------CT-ACTA-TATTTA-----------------------------------------TATTTTGACAGACCTCGACTTACTTGGCGCAACGGCTGTCGAGGATGCGCTGCAGGATGATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................CTTACTTGGCGCAACGGCTGTCGA...................2411.001100000
...........................ATGCTATTCTAAGATTGAG...................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................TACTTGGCGCAACGGCTGTCGA...................2211.001000001
..................CTGCGTGGAATGCTATTCTAAGATT......................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
droGri2
GAAAATCGAA-AGCAATTGAGCGAGGAATGCTATTCAAAGATTGAAAGTGGTTAGTGTA-CAATACAA----------------------------------------------TAATGTAATACAAT-------------------------------------------------------------------------------------------------------------------------------------AATTGATGTTTGGAATTAATTGT-----------------------------------------------------T-------TGA------------------------------A-------ATCATTCGATTAGATCTCGACTTGCTGGGCGCAACAGCTGTGGAGGATGCACTCCAGGATGATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTTGCTGGGCGCAACAGCTGT......................2611.00110

Generated: 05/17/2015 at 10:56 PM