ID:

dse_874

 Coordinate:

scaffold_150:40051-40201 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.3 -11.0 -10.4

Flybase annnotation

exon [dsec_GLEANR_17117:3]; CDS [Dsec\GM16196-cds]; intron [Dsec\GM16196-in]

No Repeatable elements found

mature
  1. scaffold_746:3659-3679 -
  2. scaffold_1238:2973-2993 +
  3. scaffold_1551:338-358 -
  4. scaffold_3339:309-329 -
  5. scaffold_5954:230-250 -
  6. scaffold_6217:350-370 -
  7. scaffold_6422:12-32 -
  8. scaffold_151:2859-2879 -
  9. scaffold_151:9215-9235 -
  10. scaffold_151:16069-16089 -
  11. scaffold_151:23497-23517 -
  12. scaffold_151:30591-30611 -
  13. scaffold_151:63805-63825 -
  14. scaffold_150:6095-6115 -
  15. dse_874  scaffold_150:40082-40102 -
  16. scaffold_150:54245-54265 -
  17. scaffold_178:50792-50812 -
  18. scaffold_321:10176-10196 -
star
  1. dse_1546  scaffold_746:3693-3713 -
  2. scaffold_1121:3178-3198 +
  3. scaffold_1238:2939-2959 +
  4. scaffold_1551:372-392 -
  5. scaffold_3339:343-363 -
  6. scaffold_5954:264-284 -
  7. scaffold_6217:384-404 -
  8. scaffold_151:9249-9269 -
  9. scaffold_151:23531-23551 -
  10. scaffold_151:30625-30645 -
  11. scaffold_151:63839-63859 -
  12. dse_874  scaffold_150:40116-40136 -
  13. scaffold_150:47257-47277 -
  14. scaffold_178:50826-50846 -
  15. scaffold_321:2933-2953 -
  16. scaffold_321:10210-10230 -

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGTTGGCCAGCGAGTCGCTTTTCTGTCGACCCACTGGACCAGCCCGTTGCCTTTGCTAACTAATCGGTTAACTCTTTCGCAAACGCAGAATCCCAATGCCACCGTCAAGCCTTTGATCCAAATGCCGTTGCAGGCCGCCAATGTCCAGGAGCAGCAGTCTCCTCCGGTGGCTTCATATCCGACACCGGCCACTCCGGTGGCTGTTCAGCAGCCATCGACTCCTGTCCCCGTTCAAGTGCCGAACTCGTCC
*******************************************************************************************************************....((....(((.....(((.((...(((......))))).))).....)))))********************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V114
embryo
 V115
head
 V113
male body
.....................................................................................................................................................GAGCAGCAGTCTCCTCCGGTG................................................................................. 21 0 18 0.11 2 1 0 1 0
......................................................................................................................................................................................................................................GTTCAAGTGCCGAACTCGTC. 20 0 20 0.10 2 1 0 0 1
...................................................................................................................GATCCAAATGCCGTTGCAGGC................................................................................................................... 21 0 16 0.06 1 1 0 0 0
..................................................................................................................TGATCCAAATGCCGTTGCA...................................................................................................................... 19 0 16 0.06 1 1 0 0 0
....................................................................................................CACCGTCAAGCCTTTGATCCAAATGC............................................................................................................................. 26 0 16 0.06 1 1 0 0 0
...................................................................................................................................CAGGCCGCCAATGTCCAGGAGT.................................................................................................. 22 1 16 0.06 1 0 0 1 0
........CAGCGAGTCGCTTTTCTGTCG.............................................................................................................................................................................................................................. 21 0 17 0.06 1 0 0 1 0
.............................................................................................................................................ATGTCCAGGAGCAGCAGTCTC......................................................................................... 21 0 17 0.06 1 1 0 0 0
..............................................................................................................CCTTTGATCCAAATGCCGTTG........................................................................................................................ 21 0 17 0.06 1 1 0 0 0
.............................................................................................................................................ATGTCCAGGAGCAGCAGTCT.......................................................................................... 20 0 17 0.06 1 0 0 0 1
...........................................................................................................................................CAATGTCCAGGAGCAGCAGTC........................................................................................... 21 0 17 0.06 1 0 0 0 1
.........................................................................................................................................GCCAATGTCCAGGAGCAGCA.............................................................................................. 20 0 17 0.06 1 0 1 0 0
...............................................................................................................CTTTGATCCAAATGCCGTTGC....................................................................................................................... 21 0 17 0.06 1 0 0 1 0
.....................................................................................................................................................................................................................CATCGACTCCTGTCCCCGTT.................. 20 0 18 0.06 1 1 0 0 0
....................................................................................................................................................................................................................CCATCGACTCCTGTCCCCGTTT................. 22 1 18 0.06 1 1 0 0 0
..................CTTTTCTGTCGACCCACTGGA.................................................................................................................................................................................................................... 21 0 18 0.06 1 1 0 0 0
........................................................................................................................................CGCCAATGTCCAGGAGCAGC............................................................................................... 20 0 18 0.06 1 0 0 0 1
........................................................................................................................................................CAGCAGTCTCCTCCGGTGGCT.............................................................................. 21 0 18 0.06 1 0 0 1 0
.................GCTTTTCTGTCGACCCACTTGACCAGCTC............................................................................................................................................................................................................. 29 2 18 0.06 1 1 0 0 0
..........................................................................................................................................................GCAGTCTCCTCCGGTGGCT.............................................................................. 19 0 18 0.06 1 1 0 0 0
...........................................................................................................................................................................................................GTTCAGCAGCCATCGACTCCTGTCCC...................... 26 0 18 0.06 1 1 0 0 0
.......................................................................................................................................................................................................................TCGGCTCCTGTCCCTGTTCGAGT............. 23 3 18 0.06 1 0 1 0 0
............................................................................................................................................................................................................TTCAGCAGCCATCGACTCCTG.......................... 21 0 18 0.06 1 1 0 0 0
.....................................................................................................................................................................................................................CATCGACTCCTGTCCCCGTTC................. 21 0 18 0.06 1 0 1 0 0
.........................................................................................................................................................................................................CTGTTCAGCAGCCATCGACTC............................. 21 0 19 0.05 1 0 0 1 0
..........................................................AACTAATCGGTTAACTCTTTCGCAAAC...................................................................................................................................................................... 27 0 19 0.05 1 0 0 0 1
.........................................................................................AATCCCAATGCCACCGTCAAG............................................................................................................................................. 21 0 20 0.05 1 0 0 1 0
............................................................................................................................................................................................................................TCCTGTCCCCGTTCAAGTGCCGA........ 23 0 20 0.05 1 1 0 0 0
.............................................................................................................................................................................TCATATCCGACACCGGCCACTTT....................................................... 23 2 20 0.05 1 1 0 0 0
.......................CTGTCGACCCACTGGACCAGCC.............................................................................................................................................................................................................. 22 0 20 0.05 1 1 0 0 0
........................TGTCGACCCACTGGACCAGCCT............................................................................................................................................................................................................. 22 1 20 0.05 1 0 0 0 1
..........................................................................................................................................CCAATGTCCGGGAGCAGCGG............................................................................................. 20 2 20 0.05 1 1 0 0 0
.......................................................................................AGAATCCCAATGCCACCGTC................................................................................................................................................ 20 0 20 0.05 1 0 1 0 0
...............................................................................................................................................................................................ACTCCGGTGGCTGTTCAGC......................................... 19 0 20 0.05 1 0 1 0 0
......................................................................................CAGAATCCCAATGCCACCGT................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0
........................TGTCGACCCACAGGACCAGCC.............................................................................................................................................................................................................. 21 1 20 0.05 1 0 1 0 0
.....................................................................................................................................................................................................................................CGTTCAAGTGCCGAACTCGTCC 22 0 20 0.05 1 1 0 0 0
..................................................................................................................................................................................................................................CCCCGTTCAAGTGCCGAACTCGTC. 24 0 20 0.05 1 0 1 0 0
.............................................................................................................................................................................TCATATCCGACACCGGCCACT......................................................... 21 0 20 0.05 1 0 0 1 0
................................................................................................................................................................................TATCCGACACCGGCCACTCCG...................................................... 21 0 20 0.05 1 1 0 0 0
.....................TTCTGTCGACCCACTGGACCA................................................................................................................................................................................................................. 21 0 20 0.05 1 0 0 0 1
...............................................................................................................................................................CTCCTCCGGTGGCTTCATATCC...................................................................... 22 0 20 0.05 1 0 1 0 0
....................................................................................................................................................................................................................................CCGTTCAAGTGCCGAACTCGTT. 22 1 20 0.05 1 1 0 0 0

Anti-sense strand reads

GGCAACCGGTCGCTCAGCGAAAAGACAGCTGGGTGACCTGGTCGGGCAACGGAAACGATTGATTAGCCAATTGAGAAAGCGTTTGCGTCTTAGGGTTACGGTGGCAGTTCGGAAACTAGGTTTACGGCAACGTCCGGCGGTTACAGGTCCTCGTCGTCAGAGGAGGCCACCGAAGTATAGGCTGTGGCCGGTGAGGCCACCGACAAGTCGTCGGTAGCTGAGGACAGGGGCAAGTTCACGGCTTGAGCAGG
*********************************************************************************....((....(((.....(((.((...(((......))))).))).....)))))******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V115
head
 V114
embryo
 V113
male body
.........................................................................................................................................................................................................GACAAGTCGTCGGTAGCTGA.............................. 20 0 19 0.11 2 1 0 0 1
.............................................................................................................................GGCAACGTCCGGCGGTTACAG......................................................................................................... 21 0 14 0.07 1 0 1 0 0
...........................................................................................................................ACGGCAACGTCCGGCGGTTAC........................................................................................................... 21 0 14 0.07 1 1 0 0 0
............................................................................................................................CGGCAACGTCCGGCGGTTACAG......................................................................................................... 22 0 14 0.07 1 1 0 0 0
.............................................................................................................................GGCAACGTCCGGCGGTTACA.......................................................................................................... 20 0 14 0.07 1 1 0 0 0
.......................................................................................................................................TGCGGTTACAGGTCCTCGTCGT.............................................................................................. 22 1 15 0.07 1 0 1 0 0
..............................................................................................................................GCAACGTCCGGCGGTTACAGG........................................................................................................ 21 0 16 0.06 1 1 0 0 0
..................................................................................................................................CGTCCGGCGGTTACAGGTCCT.................................................................................................... 21 0 16 0.06 1 1 0 0 0
..........................................................................................................................................GGTTACAGGTACTCGTCGTCA............................................................................................ 21 1 17 0.06 1 1 0 0 0
..........................................................................................................................................GGTTGCAGGTCCTCGTCGTCA............................................................................................ 21 1 17 0.06 1 0 1 0 0
.........TCGCTCAGCGAAAAGACAGCT............................................................................................................................................................................................................................. 21 0 17 0.06 1 1 0 0 0
.........................................................................................................................................CGGTTACAGGTCCTCGTCGTC............................................................................................. 21 0 17 0.06 1 0 0 1 0
..........................................................................................................................................GGTTACAGGTCCTCGTCGTCA............................................................................................ 21 0 17 0.06 1 1 0 0 0
........GTCGCTCAGCGAAAAGACAGC.............................................................................................................................................................................................................................. 21 0 17 0.06 1 1 0 0 0
...........................................................................................................................................GTTACAGGTCCTCGTCGTCAG........................................................................................... 21 0 17 0.06 1 1 0 0 0
.........................................................................................................................................................................................................................CTGAGGACAGGGGCAAGTT............... 19 0 18 0.06 1 0 0 0 1
........................................................................................................................................GCGGTTACAGGTCCTCGTC................................................................................................ 19 0 18 0.06 1 0 1 0 0
...............................................................................................................................................................................................................TCGTCGGTAGCTGAGGACAGG....................... 21 0 18 0.06 1 1 0 0 0
................GCGAAAAGACAGCTGGGTGA....................................................................................................................................................................................................................... 20 0 18 0.06 1 0 0 1 0
.....................................................................................................................................TCGGCGGTTACAGGTCCTCGT................................................................................................. 21 1 18 0.06 1 1 0 0 0
...........................................................................................................................................................TTCAGAGGAGGCCACCGAAGTA.......................................................................... 22 1 18 0.06 1 0 1 0 0
...............AGCGAAAACACAGCTGGGTGA....................................................................................................................................................................................................................... 21 1 18 0.06 1 0 0 0 1
............................................................................................................................................................TCAGAGGAGGCCACCGAAGTA.......................................................................... 21 0 18 0.06 1 0 0 1 0
......................................................................TTGAGAAAGCGTTTGCGTCT................................................................................................................................................................. 20 0 19 0.05 1 0 0 0 1
...............................................................................................TTACGGTGGCAGTTCGGAAACT...................................................................................................................................... 22 0 19 0.05 1 0 1 0 0
.......................................................................................................GCAGTTCGGAAACTAGGTTTA............................................................................................................................... 21 0 19 0.05 1 0 0 1 0
.................................................................................................TCGGTGGCAGTTCGGAAACTAG.................................................................................................................................... 22 1 19 0.05 1 0 1 0 0
..................................................GGAAACGATTGATTAGCCAAT.................................................................................................................................................................................... 21 0 20 0.05 1 1 0 0 0
...............................................................................................................................................................................................................................ACAGGGGCAAGTTCACGGCTTG...... 22 0 20 0.05 1 1 0 0 0
.................................................................................................................................................................................................................................AGGGGCAAGTTCACGGCTTGA..... 21 0 20 0.05 1 0 0 1 0
....................................CCGGGTCGGGCAAGGGAA..................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0
..........................................................................................................................................................CGTCAGAGGAGGCGTCCG............................................................................... 18 2 20 0.05 1 0 1 0 0
.................................................................................................CCGGGGGCAGTTAGGAAACT...................................................................................................................................... 20 3 20 0.05 1 1 0 0 0
................................................................................................................................................................AGGTGGCCAGAGAAGTATAG....................................................................... 20 3 20 0.05 1 1 0 0 0
........................AGAACTGGGTGACCTGGT................................................................................................................................................................................................................. 18 2 20 0.05 1 1 0 0 0
......................................CGGTCGGGCAACGCAAACG.................................................................................................................................................................................................. 19 2 20 0.05 1 0 0 0 1
........................ACAGCTGGGTGACCTGGTC................................................................................................................................................................................................................ 19 0 20 0.05 1 0 1 0 0
.....................................................................................TGTCTTAGGGTTACGCTGGCAG................................................................................................................................................ 22 2 20 0.05 1 0 0 1 0
................................................................................................................................................................................................................................CAGGGGCAAGTTCACGGCTTG...... 21 0 20 0.05 1 0 1 0 0
..........................................................................................TAGGGTTACGGTGGCAGTTCG............................................................................................................................................ 21 0 20 0.05 1 0 1 0 0
.................................................................................................................................................................................................................................AGGGGCAAGTTCACGGCTT....... 19 0 20 0.05 1 0 1 0 0
....................................................................................................................................................................................................................................GGCAAGTTCACGGCTTGAGCA.. 21 0 20 0.05 1 0 0 1 0
..........................................CGGGCAACGGAAACGGTTGGTT........................................................................................................................................................................................... 22 2 20 0.05 1 0 1 0 0
...............................................................................................................................................................................................................................ACAGGGGCAAGTTCACGGCTT....... 21 0 20 0.05 1 1 0 0 0
.............................................................................AGCGTTTGCGTCTTAGGGTTA......................................................................................................................................................... 21 0 20 0.05 1 0 1 0 0
....................................................................................................................................................................GGCCATCGAAGTATAAGC..................................................................... 18 2 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_150:40001-40251 - dse_874 CCGTTGGCC-------AGCGAGTCGCT---TTTC--TGTC--GACCCACTGGAC-CAG-------------CCCG-----------------------------------------------------------TTGCCT--------------------------T-----TG-CTAACTAATCGGTTA------ACTCTTTCGC-AA---ACGCAGAATC-CCAATGCCACCGTCAAGCCTTTGATCCAAATGCCGTTGCAGGCCGCCAAT---GTC---CAGG---------AGCAGCAGTCTCCTCCGGTGGCTTCATATCCGACACCGGCC---------------ACTCCGGTGGCTGT---TCAGCAGCC------------------------------ATCGACTCC---TG------------------TCCCCGTTCAAGTG----CC--GAACTCGTCC
droSim2 node_37002:553-833 - CCGTTGGCC-------AGCGAGTCGCT---TTTC--TGTC--GACCCACTGGAC-CAG-------------CCCG-----------------------------------------------------------TTGCCT--------------------------T-----TG-CTAACTAATCGGTTA------ACTCTTTCGC-AA---ACGCAGAATC-CCAATGGCACCGTCAAGACTTTGATCCAAATGCCGTTGCAGGCCGCCAAT---GTC---CAGG---------AGCAAAAGTCTCCTCCGGTGGCTTCATATCCGACACCGGCC---------------ACTCCGGTGGCTGT---TCAGTCGCCACCGGACGCATTATTGGCTGTGAAGCCTCCATCGGCTCC---TG------------------TACCTGTTCGAGTG----TC--GAACTCTTCC
dm3 chrX:21499590-21499923 - CCGTTGGCC-------AGCGAGTCGCT---TTTT--TGTC--GACCCACTGGAC-CAG-------------TCCGCTGCAAGTGATTT-TGTCTAGGGTAGCCTGGCGA----------GCCAGGCGGAACCCGTTGCCT--------------------------T-----CG-CTAACTAATCGACTA-ATGAAACTCTTTCGC-AA---ACGCAGAATC-CCAATGCCACCGTCAAGCCTTTGATCCAAATGCCGTTGCAGGCCGCCAAT---GTC---CAGG---------AGCAGCAGTCTTCTCCGGTGGCTTTATATCCGACATCGGCC---------------TCCCCGGTGGCTGT---TCAATCGCCACAGGACGCATTTTTGGCTGTTCAGTCGCCAGGGGCTCC---TG------------------CCCCCGTTCAACTG----GC--CAACTCGTCC
droEre2 scaffold_4690:17961745-17962032 - CCGTTGGCC-------AGCGAGTCTCT---T-TT--TGTT--GACCCACTGGAC-CAG-------------CCCGCTGCAAGTGATTT-TGTCCAGGGGAACCTGGCGA----------A---------ACCCGTTGCCT--------------------------T-----CG-CCAACTAATCAGCTA-ATGAAACTTTTTTGC-AA---ATGCAGAATC-CCAATGCCACCGTCAAGCCTTTGATTCAACAGCCGTTGCAGGATGCCAAT---GTC---CAGG---------AAAAGCAGGCTGCTCTGGTT------TATTCAAAACCGGAG---------------CCCCCGGTGGCTGT---TCAGTCGCC------------------------------ACCGTCTTC---TG------------------TCCCCGCTCAAGTG----GC--GGCCTTGCCC
droYak3 X:20621442-20621736 - CCGTTGGCC-------AGCGAGTCTCT---TTTT--TGTT--GACCCACTGGAC-TAG-------------CCCGCTGCAAGTGATTT-TGTCCGGGGGAACCTGGCGA----------A---------ACCCGTTGCCA--------------------------T-----CG-CCAACTAATAAGCTA-ATGAAACTCTTTTGC-AA---ACGCAGAATC-CCAATGCCACCGCCAAGCCTTTGATCCAACAGCCGTTGCAGATCGTCCAT---GTC---CAGG---------AGCAGGAGGCTCTTCCGGTGGCTGAATTTCAGGCACCGGCT---------------GCCCCGGTGGCTGT---TCAGTCGCC------------------------------ACCGGCTCC---TG------------------TCCCCGTTCAAGTG----GC--GACCCCGGCC
droEug1 scf7180000407781:3236-3509 - CCGTTGCCA-------AGCGAGTCTCT--ATTTT--TGTT--GACCATGTGGAT-CAG-------------CACGCTGAAAGTGATGT-TGCCCGGCGGAATTTAGCGACGA-------AACAGG------CAGAAACCT--------------------------T-----TG-CCAACTAATTCGCTA-ATTAAACTCTTTTGTCAA---ACGCAGAACCCCCAATGCCATCGACAAGCCTTTGATTCAACAGCCATTGCAGTCCATTGAT---GCC---AAAA---------AGGATCAGGACACTCCAGTAACT---------------------------------------------GA---TCATGAGCT------------------------------GCCGGCTAC---TG------------------ACCCAGTTTCAGTG----GC--GGCTGAGCCT
droBia1 scf7180000302421:82753-83023 - CCGTCGGCC-------AGCGAGTCTCC--TTTTT--AGTT--GACCCACAGGAC-TAG-------------C-CGCTGCAAGTGATCT-TATCCAGGGGAACACC-CGAAGA-------A--------AACATGTTCCCT--------------------------T-----CC-TCTACTAATCGGCTA-ATGAAACTCTTTTGC-AA---ACGCAGAATC-CCAATGCTATCGCCAAGCCTTTGATCCAACAGCCGTTGCAGGGCTCTAAT---GTC---CAGG---------AGCAGGAGGCCCCCCCGGTGGCT---------------------------------------------GC---TCAGCCGCC------------------------------ACCGGCTCC---TGCCCCGACCT------------CCGCTGCAGTG----GC-----CTCGCAG
droTak1 scf7180000415769:384097-384384 + CCGTTGGCCAGAGGCCAGCGAGTCTCT---TTTTTTGGTT--GACCCACTGGAT-TAG--------TGGATCACGCTGCAAGTGATTT-TCC--A---------------------------------------------ACAGGGGTTGCTCCCGTTCTCCCGTTTTTCTTCG-CCAACTGACCAACTA-ATGAAACTCTTTTGC-AA---ACGCAGAATC-CCAATGCCACCGCCAAGCCTTTGATCCAACAGCCGTTGCAGC------------------AGC---AGCAGCAGCAGCAGGCTCCTCCGGTGGCC---------------------------------------------GT---TCATCAGCC------------------------------ACCGGCTCCTCCTGCCCCAGTTG---------CTCCAGCTCCAGTG----GC--CGCCTCGCCA
droEle1 scf7180000491087:961025-961307 + CCGTTGGCC-------AGCGAGTCTCT---TTTT--TGTT--AGCACACTGGAT-TAG-------------CCCGCTGCAAGTGATTT-TGTCCAGGGGAATCAAGCGACGA-------A--------AACTCGTTCCCT--------------------------T-----CACCCCACTAATCAGCTA-ATGAAACTCTTTTGCAAA---ACCCAGAATC-CCAGTGCCAGCGTCAAGCCCTTGATCCAACCGCCATTGCAGGGCAATAATAATGTC---CAGG---------AGCATCAGGCTCCTTCGCTGGCT---------------------------------------------GCTCCTCCTCCGCC------------------------------ACCGGCTCC---TGTCCCAGTTC------------CCACTGCCGTG----GC--ATCCTCGCCT
droRho1 scf7180000777745:57828-58103 + CCGTTGGCC-------AGCGAGTCTCT---TTTT--TGTT--AACACACTGGAT-AAG-------------CCCGCTGCAAGTGATTT-TGTCTAGGGGAACCAAGCGACGA-------A--------AATTCGTTCCCT--------------------------T-----CA-CCCACTAATCCGCTAAATGAAACTCTTTCGC-AA---ACGCAGAATC-CCAATGCCACCGCCAAGCCTTTGATCCAACCGCCGTTGCAGGGCAATAAT---GTC---CAGG---------AGTATCAGGCTCCTCCGGTGGCTGCT------------------------------------------------TCTCTGCC------------------------------ACCGGCTCC---TGCCCCAGTTG------------CCGTTCCAGTG----GC--GGTCTCGCCT
droFic1 scf7180000453926:449715-449985 - CCGTTTGCC-------AGCGAGTCCCT---TTTT--AGTT--GACCCACTGGAT-TAG-------------CCCGCTGCGAGAGATTT-TGTCCAGGGGATCATAGCGACAA-------A---------AATCCATCCCT--------------------------T-----CG-CCAACTAATCAGCTA-ACGAAACTCTTTTGC-AA---ACGCAGAACC-CCAATGCCAGCGCCAAGCCCTTGATCCAACAGCCGTTGCAGGCCACCAAT---GTC---GCGG---------AGCAGCAGGCTCCTTCGGTGGCCTCC------------------------------------------------CATGCGCC------------------------------ACCGGCCCC---TCTCCCAGTTC------------CCGTTCCGGTG----GC--AGACT---CT
droKik1 scf7180000302798:89807-90118 - CCTCGAGCC------AAGCGAGTCTCTTTATTTT--GGTT--AAACCACTGGATTTAG-------------CCCGCTGCGAGTACTTTATTTCCAGCGGATCCTTGAGACGACTAGCAAG---------GCCTATGGC-T--------------------------T-----TC-CTTCCTAAGCAACTA-ATGAAACTCTTTTGC-CAACCACGCAGAATC-CCAATGCCACTCCCAAACCATTGGTCCAGCC---GGCGCTGGGTCCTAAT---GGT---CAAGAGCAGCCGCAGCAGCTGGCTCCGCCGCCGGTTTCCAGTCCAGCTCCGGCCACGGTCACGCCCACGGCCCCGGCCGCTG------------------------------------------------CCCC---AGCTCCAGCTT------------CTGTTCCAGT-------------------
droAna3 scaffold_13117:2967467-2967761 - CCGTTGGCA------CAGCAACTATTTTTTTTTT--TTTTTGTAA--TAT----ATATCCATTATATG---------------GATT----------GCATATATTAGACAA----------------AGCAAGGCCCCTTCAGGGGG------------------C-----TC-TCACCCATTCGACTA-ATTAAATCATTTTGC-AA---AAACAGAACC-CGAATGCCAACGCCAAGCCGTTGATCCAGCCTCCGTTGCAGGCCGCTAATGTGGTC---CAGA---------ATCAGCCAGATAC------CGTTTCGCAGCCGGCACCGGTT------AAC------GCTCCGGTTCCGGC---TC------------------------------------------------------CAGCTCCAGCTCCAGCTCCTGTTCAGCAG----AAGCAGCAGGAGCC
droBip1 scf7180000396696:167656-167919 + CCGTTGGCA-------AA---GCCTCAACATTTT--TTTT--AAA--TAT----ATATCCGTAATATGGATTCCATA--------------------GCATATATTAAA------------CATG----CACAGCCCCCTTCTGG-GG------------------T-----TC-CCACCCATTCCACTA-ACTAAATAATTTTGC-AA---AAACAGAATC-CGAATGCCAACGCCCAGCCGTTGATCCAGCCTCCATTGCAGGCCGCTAAT---GTGGTCCAGA---------ATCAGC------CACAAGCCGCTCCC------------------------------------------------CAGCCGGC------------------------------ACCGGCACC---GGTTGCAGCTC------------CTGCTCCAGTT----CA-----GCAGCAG
dp5 XL_group1a:1174497-1174659 + TTGCT--------------------TT---TTCT--TGA-------------------------------------------------------------------------------------------------------------------------------------------------TGAATA-ATGAAATTTTTCAA--TA---ATATAGAATC-CGAATGTCCCGGCCAAGCCCTTGATTCAACCGCCGGC---------AAAT---GCT---CTGT---------CGCAG---GCATCTCCAGT---------------------------------------------------------CTCGGC------------------------------GCCTACCCC---GACTCCAGTGC------------CGGCTCCAGTTGCAGTC--AAAGAGGTGC
droPer2 scaffold_26:1289808-1289970 + TTGCT--------------------TT---TTCT--TGA-------------------------------------------------------------------------------------------------------------------------------------------------TGAATA-ATGAAATTTTTCAA--TA---ATTTAGAATC-CGAATGTCGCGGCCAAGCCCTTGATTCAACCGCCGGC---------AAAT---GCT---CTGT---------CGCAG---GCATCTCCAGTG---------------------------------------------------------TCGGC------------------------------GCCTACCCC---GACTCCAGTGC------------CGGCTCCAGTTGCAGTC--AAAGAGGTGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CCGTTGGCC-------AGCGAGTCGCT---TTTC--TGTC--GACCCACTGGAC-CAG-------------CCCG-----------------------------------------------------------TTGCCT--------------------------T-----TG-CTAACTAATCGGTTA------ACTCTTTCGC-AA---ACGCAGAATC-CCAATGCCACCGTCAAGCCTTTGATCCAAATGCCGTTGCAGGCCGCCAAT---GTC---CAGG---------AGCAGCAGTCTCCTCCGGTGGCTTCATATCCGACACCGGCC---------------ACTCCGGTGGCTGT---TCAGCAGCC------------------------------ATCGACTCC---TG------------------TCCCCGTTCAAGTG----CC--GAACTCGTCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................G---------AGCAGCAGTCTCCTCCGGTG............................................................................................................................................................21180.1121001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAAGTG----CC--GAACTCGTC.20200.1021100
.....................................................................................................................................................................................................................................................GATCCAAATGCCGTTGCAGGC.............................................................................................................................................................................................................21160.0611000
....................................................................................................................................................................................................................................................TGATCCAAATGCCGTTGCA................................................................................................................................................................................................................19160.0611000
......................................................................................................................................................................................................................................CACCGTCAAGCCTTTGATCCAAATGC.......................................................................................................................................................................................................................26160.0611000
.....................................................................................................................................................................................................................................................................CAGGCCGCCAAT---GTC---CAGG---------AGT.............................................................................................................................................................................22160.0610001
........C-------AGCGAGTCGCT---TTTC--TGTC--G............................................................................................................................................................................................................................................................................................................................................................................................................................................21170.0610001
...............................................................................................................................................................................................................................................................................AT---GTC---CAGG---------AGCAGCAGTCTC....................................................................................................................................................................21170.0611000
................................................................................................................................................................................................................................................CCTTTGATCCAAATGCCGTTG..................................................................................................................................................................................................................21170.0611000
...............................................................................................................................................................................................................................................................................AT---GTC---CAGG---------AGCAGCAGTCT.....................................................................................................................................................................20170.0610100
.............................................................................................................................................................................................................................................................................CAAT---GTC---CAGG---------AGCAGCAGTC......................................................................................................................................................................21170.0610100
...........................................................................................................................................................................................................................................................................GCCAAT---GTC---CAGG---------AGCAGCA.........................................................................................................................................................................20170.0610010
.................................................................................................................................................................................................................................................CTTTGATCCAAATGCCGTTGC.................................................................................................................................................................................................................21170.0610001
........................................................................................................................................................................................................................................................................................................................................................................................C------------------------------ATCGACTCC---TG------------------TCCCCGTT........................20180.0611000
.......................................................................................................................................................................................................................................................................................................................................................................................CC------------------------------ATCGACTCC---TG------------------TCCCCGTTT.......................22180.0611000
.........................CT---TTTC--TGTC--GACCCACTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................21180.0611000
..........................................................................................................................................................................................................................................................................CGCCAAT---GTC---CAGG---------AGCAGC..........................................................................................................................................................................20180.0610100
.........................................................................................................................................................................................................................................................................................................CAGCAGTCTCCTCCGGTGGCT.........................................................................................................................................................21180.0610001
...........................................................................................................................................................................................................................................................................................................GCAGTCTCCTCCGGTGGCT.........................................................................................................................................................19180.0611000
...........................................................................................................................................................................................................................................................................................................................................................................GT---TCAGCAGCC------------------------------ATCGACTCC---TG------------------TCCC............................26180.0611000
............................................................................................................................................................................................................................................................................................................................................................................T---TCAGCAGCC------------------------------ATCGACTCC---TG------------------................................21180.0611000
........................................................................................................................................................................................................................................................................................................................................................................................C------------------------------ATCGACTCC---TG------------------TCCCCGTTC.......................21180.0610010
.........................................................................................................................................................................................................................................................................................................................................................................CTGT---TCAGCAGCC------------------------------ATCGACTC........................................................21190.0510001
.................................................................................................................................................................................AACTAATCGGTTA------ACTCTTTCGC-AA---AC.................................................................................................................................................................................................................................................................27190.0510100
..........................................................................................................................................................................................................................AATC-CCAATGCCACCGTCAAG.......................................................................................................................................................................................................................................21200.0510001
.............................................................................................................................................................................................................................................................................................................................................................................................................................TCC---TG------------------TCCCCGTTCAAGTG----CC--GA........23200.0511000
..............................................................................................................................................................................................................................................................................................................................TCATATCCGACACCGGCC---------------ACTTT...................................................................................................................23200.0511000
.................................C--TGTC--GACCCACTGGAC-CAG-------------CC..............................................................................................................................................................................................................................................................................................................................................................................................................22200.0511000
....................................TGTC--GACCCACTGGAC-CAG-------------CCT.............................................................................................................................................................................................................................................................................................................................................................................................................22200.0510100
........................................................................................................................................................................................................................AGAATC-CCAATGCCACCGTC..........................................................................................................................................................................................................................................20200.0510010
...............................................................................................................................................................................................................................................................................................................................................................ACTCCGGTGGCTGT---TCAGC..................................................................................................19200.0510010
.......................................................................................................................................................................................................................CAGAATC-CCAATGCCACCGT...........................................................................................................................................................................................................................................20200.0510010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTTCAAGTG----CC--GAACTCGTCC22200.0511000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGTTCAAGTG----CC--GAACTCGTC.24200.0510010
..............................................................................................................................................................................................................................................................................................................................TCATATCCGACACCGGCC---------------ACT.....................................................................................................................21200.0510001
.................................................................................................................................................................................................................................................................................................................................TATCCGACACCGGCC---------------ACTCCG..................................................................................................................21200.0511000
...............................TTC--TGTC--GACCCACTGGAC-CA..............................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100
................................................................................................................................................................................................................................................................................................................CTCCTCCGGTGGCTTCATATCC.................................................................................................................................................22200.0510010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTCAAGTG----CC--GAACTCGTT.22200.0511000
droSim2
CCGTTGGCC-------AGCGAGTCGCT---TTTC--TGTC--GACCCACTGGAC-CAG-------------CCCG-----------------------------------------------------------TTGCCT--------------------------T-----TG-CTAACTAATCGGTTA------ACTCTTTCGC-AA---ACGCAGAATC-CCAATGGCACCGTCAAGACTTTGATCCAAATGCCGTTGCAGGCCGCCAAT---GTC---CAGG---------AGCAAAAGTCTCCTCCGGTGGCTTCATATCCGACACCGGCC---------------ACTCCGGTGGCTGT---TCAGTCGCCACCGGACGCATTATTGGCTGTGAAGCCTCCATCGGCTCC---TG------------------TACCTGTTCGAGTG----TC--GAACTCTTCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................TGGCACCGTCAAGACTTTGATCCAAA..........................................................................................................................................................................................................................2613.00300000011010000000
..............................TTTC--TGTC--GACCCACTGGAC-C...............................................................................................................................................................................................................................................................................................................................................................................................................................2131.33440000000000000000
..........................................................................................................................................................................................................................................GTCAAGACTTTGATCCAAATGCCGT....................................................................................................................................................................................................................2511.00100000000100000000
................................................................................................................................................................................................................................................................................T---GTC---CAGG---------AGCAAAAGTCTCCTCCGG..............................................................................................................................................................2611.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................TCGCCACCGGACGCATTATTGGCTGTGA.......................................................................2811.00100000000010000000
...........................................................................................................................................................................................................................................TCAAGACTTTGATCCAAATGCCGTTGC.................................................................................................................................................................................................................2711.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................TATTGGCTGTGAAGCCTCCATCGGC..........................................................2511.00100000000001000000
.......................................................................................................................................................................................................................................ACCGTCAAGACTTTGATCCAAATGCCGT....................................................................................................................................................................................................................2811.00100000000100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................TCCATCGGCTCC---TG------------------TACC............................1811.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................CTCCATCGGCTCC---TG------------------TACCT...........................2011.00110000000000000000
............................................................................................................................................................................................................................TC-CCAATGGCACCGTCAAGACTTTGA................................................................................................................................................................................................................................2611.00100000000100000000
........................................................................................................................................................................................................................AGAATC-CCAATGGCACCGTCAAGACTT...................................................................................................................................................................................................................................2711.00100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTGTGAAGCCTCCATCGGCTCC---....................................................2611.00100000010000000000
.........................................................................................................................................................................................................................................CGTCAAGACTTTGATCCAAATGCC......................................................................................................................................................................................................................2411.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................TCCGACACCGGCC---------------ACTCCGGTGGCTGT---.......................................................................................................2721.00200000000002000000
.......................................................................................................................................................................................................................................................................................................................................................................GGCTGT---TCAGTCGCCACCGGACGCATT..................................................................................2711.00100010000000000000
......................................................................................................................................................................................................................................CACCGTCAAGACTTTGATCCAAATGCC......................................................................................................................................................................................................................2711.00100100000000000000
......................................................................................................................................................................................................................................CACCGTCAAGACTTTGATCCAAATGC.......................................................................................................................................................................................................................2611.00100000001000000000
...............................................................................................................................................................................................................................................GACTTTGATCCAAATGCCGTTGCAGGC.............................................................................................................................................................................................................2711.00100000001000000000
..................................................................................................................................................................................................................................ATGGCACCGTCAAGACTTTGATCCAA...........................................................................................................................................................................................................................2611.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................TGGCTGT---TCAGTCGCCACCGGACGC.....................................................................................2511.00100000000000001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGCTCC---TG------------------TACCTGTTCGAGTG----T.............2611.00100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGTTCGAGTG----TC--GT........1611.00100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................TCCGGTGGCTGT---TCAGTCGCCAC............................................................................................2311.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................TCGCCACCGGACGCATTATTGGCTGT.........................................................................2611.00100000000001000000
...........................................................................................................................................................................................................................................TCAAGACTTTGATCCAAATGCCGT....................................................................................................................................................................................................................2411.00100000010000000000
.......................CGCT---TTTC--TGTC--GACCCACTGGAC-C...............................................................................................................................................................................................................................................................................................................................................................................................................................2530.67200200000000000000
..............................................CACTGGAC-CAG-------------CCCG-----------------------------------------------------------TTGCCT--------------------------.................................................................................................................................................................................................................................................................................................................2130.67220000000000000000
..........................................................................................................................................CT--------------------------T-----TG-CTAACTAATCGGTTA------A..................................................................................................................................................................................................................................................................................2130.67200000011000000000
.......................................................................................................................................TGCCT--------------------------T-----TG-CTAACTAATCGGTTA------ACTC...............................................................................................................................................................................................................................................................................2730.67200200000000000000
......................................................................................................................................................................................ATCGGTTA------ACTCTTTCGC-AA---ACGCAG.............................................................................................................................................................................................................................................................2640.50200000002000000000
....................................................................................................................................................................................................................................................TGATCCAAATGCCGTTGCAGG..............................................................................................................................................................................................................2130.33100000001000000000
..................................................................................................................................................................................................................................................TTTGATCCAAATGCCGTTGC.................................................................................................................................................................................................................2030.33110000000000000000
.......................................C--GACCCACTGGAC-CAG-------------CCCG-----------------------------------------------------------TTGCCT--------------------------T-----...........................................................................................................................................................................................................................................................................................................2730.33100000001000000000
.................................C--TGTC--GACCCACTGGAC-CAG-------------CC..............................................................................................................................................................................................................................................................................................................................................................................................................2230.33100100000000000000
...............................TTC--TGTC--GACCCACTGGAC-CAG-------------CCCG-----------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................................2730.33100000001000000000
..........................T---TTTC--TGTC--GACCCACTGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2030.33110000000000000000
....................................................................................................................................................................................................................................................TGATCCAAATGCCGTTGCAGGCCGCCAA.......................................................................................................................................................................................................2830.33100010000000000000
.......................................................................................................................................................................................................................................................TCCAAATGCCGTTGCAGG..............................................................................................................................................................................................................1830.33100000000010000000
...............................................................................................................................................................................CTAACTAATCGGTTA------ACTCTTTCGC-........................................................................................................................................................................................................................................................................2530.33100000010000000000
..................................................................................................................................................................................................................................................TTTGATCCAAATGCCGT....................................................................................................................................................................................................................1730.33100000000001000000
...........................................................................................................................................................................................................................................................AATGCCGTTGCAGGCCGCCAAT---...................................................................................................................................................................................................2230.33100010000000000000
.................................................................................................................................................................................AACTAATCGGTTA------ACTCTTTCGC-AA---ACGC...............................................................................................................................................................................................................................................................2930.33100100000000000000
..................................................................................................................................................................................................................................................TTTGATCCAAATGCCGTTGCAGGCCGCCAA.......................................................................................................................................................................................................3030.33100000010000000000
..............................................................................................................................................................................................................................................................................................................................TCATATCCGACACCGGCC---------------........................................................................................................................1830.33100010000000000000
......................................................................................................................................................................................ATCGGTTA------ACTCTTTCGC-AA---ACGCAGAA...........................................................................................................................................................................................................................................................2840.25100000000000010000
.......................................................................................................................................................................................TCGGTTA------ACTCTTTCGC-AA---ACGCAGAA...........................................................................................................................................................................................................................................................2740.25100000000100000000
..........................................................................................................................................................................................GTTA------ACTCTTTCGC-AA---ACGCA..............................................................................................................................................................................................................................................................2140.25100000010000000000
.......................................................................................................................................................................................TCGGTTA------ACTCTTTCGC-AA---AC.................................................................................................................................................................................................................................................................2140.25100000001000000000
...................................................................................................................................................................................CTAATCGGTTA------ACTCTTTCGC-........................................................................................................................................................................................................................................................................2140.25100010000000000000
.......................................................................................................................................................................................TCGGTTA------ACTCTTTCGC-AA---ACGCAGA............................................................................................................................................................................................................................................................2640.25100000001000000000
.........................................................................................................................................................................................GGTTA------ACTCTTTCGC-AA---ACGC...............................................................................................................................................................................................................................................................2140.25100000010000000000
.......................................................................................................................................................................................TCGGTTA------ACTCTTTCGC-AA---ACGCAG.............................................................................................................................................................................................................................................................2540.25101000000000000000
......................................................................................................................................................................................ATCGGTTA------ACTCTTTCGC-AA---AC.................................................................................................................................................................................................................................................................2240.25110000000000000000
................AGCGAGTCGCT---TTTC--TGTC--GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................2140.25100000001000000000
.........................................................................................................................................................................................................................................................................CCGCCAAT---GTC---CAGG---------A...............................................................................................................................................................................1650.20100000010000000000
..................................................................................................................................................................................................................................................................TTGCAGGCCGCCAAT---GTC---CAGG---------................................................................................................................................................................................2250.20100000000000001000
..................................................................................................................................................................................................................................ATGGCACCGTCAAGT......................................................................................................................................................................................................................................1570.14100000010000000000
dm3
CCGTTGGCC-------AGCGAGTCGCT---TTTT--TGTC--GACCCACTGGAC-CAG-------------TCCGCTGCAAGTGATTT-TGTCTAGGGTAGCCTGGCGA----------GCCAGGCGGAACCCGTTGCCT--------------------------T-----CG-CTAACTAATCGACTA-ATGAAACTCTTTCGC-AA---ACGCAGAATC-CCAATGCCACCGTCAAGCCTTTGATCCAAATGCCGTTGCAGGCCGCCAAT---GTC---CAGG---------AGCAGCAGTCTTCTCCGGTGGCTTTATATCCGACATCGGCC---------------TCCCCGGTGGCTGT---TCAATCGCCACAGGACGCATTTTTGGCTGTTCAGTCGCCAGGGGCTCC---TG------------------CCCCCGTTCAACTG----GC--CAACTCGTCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................CAAT---GTC---CAGG---------AGCAGCAGTCTTC...................................................................................................................................................................24113.00130000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001040000001001000000000000001100000
.............................................................................................................................................................................................................................................AAGCCTTTGATCCAAATGCCGTTGC.................................................................................................................................................................................................................25111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011800000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TCAGTCGCCAGGGGCTCC---TG------------------CCCCCGT.........................2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000001000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000100400000
...................................................................................................................................................................................................................................................................................................................................................................................................TTTTTGGCTGTTCAGTCGCCAGGGGC..........................................................2619.0090000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010013000
.............................................................................................................................................................................................................................................................................................................................................................................................................TTCAGTCGCCAGGGGCTCC---TG------------------CCCCCGT.........................2819.0090000000000000000000000010000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000500000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGTTCAGTCGCCAGGGGCTCC---....................................................2718.0080000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................AAT---GTC---CAGG---------AGCAGCAGTCTTC...................................................................................................................................................................2316.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000100000000010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGTTCAGTCGCCAGGGGC..........................................................2414.0040000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................AGCAGTCTTCTCCGGTGGCTT........................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................T---GTC---CAGG---------AGCAGCAGTCTTCTCC................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000
..........................T---TTTT--TGTC--GACCCACTGGAC-CAG-------------TCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................2914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TC---CAGG---------AGCAGCAGTCTTC...................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................CCAAT---GTC---CAGG---------AGCAGCAGTCTTC...................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000002000000000000000100000
.................................T--TGTC--GACCCACTGGAC-CAG-------------TCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................TCCGACATCGGCC---------------TCCCCGGTGGCTGT---.......................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................T---TCAATCGCCACAGGACGCATTTTTGGC............................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TCCCCGGTGGCTGT---TCAATCGCCACAGGAC.......................................................................................3013.0030000000000000000000000000000000000000000000000000000000000000000000000000000001020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTTT--TGTC--GACCCACTGGAC-CAG-------------TCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................2813.0030000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................T---GTC---CAGG---------AGCAGCAGTCTTCTCCGG..............................................................................................................................................................2613.0030000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................................................................................................................................................T---GTC---CAGG---------AGCAGCAGTCTTCT..................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CACCGTCAAGCCTTTGATCCAAATGC.......................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGT---TCAATCGCCACAGGACGCATT..................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTTT--TGTC--GACCCACTGGAC-CAG-------------TC..............................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................T---TTTT--TGTC--GACCCACTGGAC-C...............................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................AAT---GTC---CAGG---------AGCAGCAGTCTTCTCC................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
...................................................................................................................................................................................................................................TGCCACCGTCAAGCCTTTGATCCAAATG........................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................C--GACCCACTGGAC-CAG-------------TCCGCTGC........................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................CACCGTCAAGCCTTTGATCCAAATGCC......................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TGTTCAGTCGCCAGGGGCTCC---TG------------------CCCCCGT.........................3012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................T---TTTT--TGTC--GACCCACTGGAC-CAG-------------TC..............................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................TT--TGTC--GACCCACTGGAC-CAG-------------TCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................TC-CCAATGCCACCGTCAAGCCTTTGA................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................CCACAGGACGCATTTTTGGCTG..........................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................T---TCAATCGCCACAGGACGCATTTTT...............................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGTTCAGTCGCCAGGGGCTC........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
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...........................................................................................................................................................................................................................................................................GCCAAT---GTC---CAGG---------AGCAGCAGTCTTC...................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
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......................................TC--GACCCACTGGAC-CAG-------------TCCGCTGCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TC--GACCCACTGGAC-CAG-------------TCCGCTGC........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................................................................................................................................................................................T---GTC---CAGG---------AGCAGCAGTCTTCTCCG...............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GTC---CAGG---------AGCAGCAGTCTT....................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
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......................................................................................TT-TGTCTAGGGTAGCCTGGCGA----------GCCAGG..........................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................................................................................................................................................................G---------AGCAGCAGTCTTCTCCGGTGGCTT........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................................................................................................................CAAT---GTC---CAGG---------AGCAGCAGTCTTCT..................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
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.........................................................................................................GCGA----------GCCAGGCGGAACCCGTTGC.............................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................GCGA----------GCCAGGCGGAACCCG.................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................................................................................................................................................................................................................................................................................................................................................AGTCGCCAGGGGCTCC---TG------------------CCCCCGT.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................TCAGTCGCCAGGGGCTCC---TG------------------CCCCCGTT........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AGGGGCTCC---TG------------------CCCCCGTTCAACTG----GC--CAA.......3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................TC--GACCCACTGGAC-CAG-------------TCCGCTGCAAAA....................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................AATCGCCACAGGACGCATTTTTGGCTGT.........................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.......CC-------AGCGAGTCGCT---TTTT--TGTC--GACCCACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GCAGCAGTCTTCTCCGGTGGC..........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................ACTAATCGACTA-ATGAAACTCTTTCGC-........................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................GGCGGAACCCGTTGCCT--------------------------T-----CG-CTAACTAAT...............................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...............................................................................................................................................................................................................................................................................................................................................................TCCCCGGTGGCTGT---TCAAT..................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................GCCAGGCGGAACCCGTTGC.............................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...................................................................................................................................................................................................................................................TTGATCCAAATGCCGTTG..................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................................................................................................................................................................................CCAAT---GTC---CAGG---------AGCAGCAGTCTT....................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................ATCCGACATCGGCC---------------TCCCCGGT................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...................................................................................................................................................................................................................................................TTGATCCAAATGCCGTTGCAGGCCGCC.........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................TGTCTAGGGTAGCCTGGCGA----------GCCAGG..........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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......................................................................................................................................................................................................................................................................AGGCCGCCAAT---GTC---CAGG---------AGCAGCAGT.......................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCTGTTCAGTCGCCAGGGGCT.........................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................CCGCCAAT---GTC---CAGG---------AGCAG...........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................TGT---TCAATCGCCACAGGACGCATTTTTG..............................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................CTTCTCCGGTGGCTTTATATCCGACA.............................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CCGTTGGCC-------AGCGAGTCTCT---T-TT--TGTT--GACCCACTGGAC-CAG-------------CCCGCTGCAAGTGATTT-TGTCCAGGGGAACCTGGCGA----------A---------ACCCGTTGCCT--------------------------T-----CG-CCAACTAATCAGCTA-ATGAAACTTTTTTGC-AA---ATGCAGAATC-CCAATGCCACCGTCAAGCCTTTGATTCAACAGCCGTTGCAGGATGCCAAT---GTC---CAGG---------AAAAGCAGGCTGCTCTGGTT------TATTCAAAACCGGAG---------------CCCCCGGTGGCTGT---TCAGTCGCC------------------------------ACCGTCTTC---TG------------------TCCCCGCTCAAGTG----GC--GGCCTTGCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................GGCTGCTCTGGTT------TATTCA................................................................................................................................................1911.0011000000
..........................................................................................................................................................................................................................................................................TGCCAAT---GTC---CAGG---------AAAAGC..........................................................................................................................................................................2011.0010001000
..........................................................................................................................................................................................................................................GTCAAGCCTTTGATTCAACAGCCGT....................................................................................................................................................................................................................2511.0011000000
...........................................................................................................................................................................................................................................TCAAGCCTTTGATTCAACAGCCGT....................................................................................................................................................................................................................2411.0011000000
.......................CTCT---T-TT--TGTT--GACCCACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
droYak3
CCGTTGGCC-------AGCGAGTCTCT---TTTT--TGTT--GACCCACTGGAC-TAG-------------CCCGCTGCAAGTGATTT-TGTCCGGGGGAACCTGGCGA----------A---------ACCCGTTGCCA--------------------------T-----CG-CCAACTAATAAGCTA-ATGAAACTCTTTTGC-AA---ACGCAGAATC-CCAATGCCACCGCCAAGCCTTTGATCCAACAGCCGTTGCAGATCGTCCAT---GTC---CAGG---------AGCAGGAGGCTCTTCCGGTGGCTGAATTTCAGGCACCGGCT---------------GCCCCGGTGGCTGT---TCAGTCGCC------------------------------ACCGGCTCC---TG------------------TCCCCGTTCAAGTG----GC--GACCCCGGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................................................................................................................................................................................AACAGCCGTTGCAGATCGTCC........................................................................................................................................................................................................2111.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................GCTGT---TCAGTCGCC------------------------------ACCGGCTCC---T...................................................2411.00100100000000
...........................................................................................................................................................................................................................................................................GTCCAT---GTC---CAGG---------AGCAGGA.........................................................................................................................................................................2011.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................CGCC------------------------------ACCGGCTCC---TG------------------TCCCC...........................2011.00101000000000
...........................................................................................................................................................................................................................................................................................................GGAGGCTCTTCCGGTGGC..........................................................................................................................................................1811.00101000000000
........................................................................................................................................................................................................................................................................ATCGTCCAT---GTC---CAGG---------AGCAGGA.........................................................................................................................................................................2311.00100000010000
.......................CTCT---TTTT--TGTT--GACCCACT.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.......................CTCT---TTTT--TGTT--GACCCACTG....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
droEug1
CCGTTGCCA-------AGCGAGTCTCT--ATTTT--TGTT--GACCATGTGGAT-CAG-------------CACGCTGAAAGTGATGT-TGCCCGGCGGAATTTAGCGACGA-------AACAGG------CAGAAACCT--------------------------T-----TG-CCAACTAATTCGCTA-ATTAAACTCTTTTGTCAA---ACGCAGAACCCCCAATGCCATCGACAAGCCTTTGATTCAACAGCCATTGCAGTCCATTGAT---GCC---AAAA---------AGGATCAGGACACTCCAGTAACT---------------------------------------------GA---TCATGAGCT------------------------------GCCGGCTAC---TG------------------ACCCAGTTTCAGTG----GC--GGCTGAGCCTSizeHit CountTotal NormTotal
No Reads
droBia1
CCGTCGGCC-------AGCGAGTCTCC--TTTTT--AGTT--GACCCACAGGAC-TAG-------------C-CGCTGCAAGTGATCT-TATCCAGGGGAACACC-CGAAGA-------A--------AACATGTTCCCT--------------------------T-----CC-TCTACTAATCGGCTA-ATGAAACTCTTTTGC-AA---ACGCAGAATC-CCAATGCTATCGCCAAGCCTTTGATCCAACAGCCGTTGCAGGGCTCTAAT---GTC---CAGG---------AGCAGGAGGCCCCCCCGGTGGCT---------------------------------------------GC---TCAGCCGCC------------------------------ACCGGCTCC---TGCCCCGACCT------------CCGCTGCAGTG----GC-----CTCGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
CCGTTGGCCAGAGGCCAGCGAGTCTCT---TTTTTTGGTT--GACCCACTGGAT-TAG--------TGGATCACGCTGCAAGTGATTT-TCC--A---------------------------------------------ACAGGGGTTGCTCCCGTTCTCCCGTTTTTCTTCG-CCAACTGACCAACTA-ATGAAACTCTTTTGC-AA---ACGCAGAATC-CCAATGCCACCGCCAAGCCTTTGATCCAACAGCCGTTGCAGC------------------AGC---AGCAGCAGCAGCAGGCTCCTCCGGTGGCC---------------------------------------------GT---TCATCAGCC------------------------------ACCGGCTCCTCCTGCCCCAGTTG---------CTCCAGCTCCAGTG----GC--CGCCTCGCCASizeHit CountTotal NormTotal
No Reads
droEle1
CCGTTGGCC-------AGCGAGTCTCT---TTTT--TGTT--AGCACACTGGAT-TAG-------------CCCGCTGCAAGTGATTT-TGTCCAGGGGAATCAAGCGACGA-------A--------AACTCGTTCCCT--------------------------T-----CACCCCACTAATCAGCTA-ATGAAACTCTTTTGCAAA---ACCCAGAATC-CCAGTGCCAGCGTCAAGCCCTTGATCCAACCGCCATTGCAGGGCAATAATAATGTC---CAGG---------AGCATCAGGCTCCTTCGCTGGCT---------------------------------------------GCTCCTCCTCCGCC------------------------------ACCGGCTCC---TGTCCCAGTTC------------CCACTGCCGTG----GC--ATCCTCGCCTSizeHit CountTotal NormTotal
No Reads
droRho1
CCGTTGGCC-------AGCGAGTCTCT---TTTT--TGTT--AACACACTGGAT-AAG-------------CCCGCTGCAAGTGATTT-TGTCTAGGGGAACCAAGCGACGA-------A--------AATTCGTTCCCT--------------------------T-----CA-CCCACTAATCCGCTAAATGAAACTCTTTCGC-AA---ACGCAGAATC-CCAATGCCACCGCCAAGCCTTTGATCCAACCGCCGTTGCAGGGCAATAAT---GTC---CAGG---------AGTATCAGGCTCCTCCGGTGGCTGCT------------------------------------------------TCTCTGCC------------------------------ACCGGCTCC---TGCCCCAGTTG------------CCGTTCCAGTG----GC--GGTCTCGCCTSizeHit CountTotal NormTotal
No Reads
droFic1
CCGTTTGCC-------AGCGAGTCCCT---TTTT--AGTT--GACCCACTGGAT-TAG-------------CCCGCTGCGAGAGATTT-TGTCCAGGGGATCATAGCGACAA-------A---------AATCCATCCCT--------------------------T-----CG-CCAACTAATCAGCTA-ACGAAACTCTTTTGC-AA---ACGCAGAACC-CCAATGCCAGCGCCAAGCCCTTGATCCAACAGCCGTTGCAGGCCACCAAT---GTC---GCGG---------AGCAGCAGGCTCCTTCGGTGGCCTCC------------------------------------------------CATGCGCC------------------------------ACCGGCCCC---TCTCCCAGTTC------------CCGTTCCGGTG----GC--AGACT---CTSizeHit CountTotal NormTotal
No Reads
droKik1
CCTCGAGCC------AAGCGAGTCTCTTTATTTT--GGTT--AAACCACTGGATTTAG-------------CCCGCTGCGAGTACTTTATTTCCAGCGGATCCTTGAGACGACTAGCAAG---------GCCTATGGC-T--------------------------T-----TC-CTTCCTAAGCAACTA-ATGAAACTCTTTTGC-CAACCACGCAGAATC-CCAATGCCACTCCCAAACCATTGGTCCAGCC---GGCGCTGGGTCCTAAT---GGT---CAAGAGCAGCCGCAGCAGCTGGCTCCGCCGCCGGTTTCCAGTCCAGCTCCGGCCACGGTCACGCCCACGGCCCCGGCCGCTG------------------------------------------------CCCC---AGCTCCAGCTT------------CTGTTCCAGT-------------------SizeHit CountTotal NormTotal
No Reads
droAna3
CCGTTGGCA------CAGCAACTATTTTTTTTTT--TTTTTGTAA--TAT----ATATCCATTATATG---------------GATT----------GCATATATTAGACAA----------------AGCAAGGCCCCTTCAGGGGG------------------C-----TC-TCACCCATTCGACTA-ATTAAATCATTTTGC-AA---AAACAGAACC-CGAATGCCAACGCCAAGCCGTTGATCCAGCCTCCGTTGCAGGCCGCTAATGTGGTC---CAGA---------ATCAGCCAGATAC------CGTTTCGCAGCCGGCACCGGTT------AAC------GCTCCGGTTCCGGC---TC------------------------------------------------------CAGCTCCAGCTCCAGCTCCTGTTCAGCAG----AAGCAGCAGGAGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGCAG----AAGCAGCAG.....1811.001100000
......................................................................................................................................................................................................................................................................................................................................................AAC------GCTCCGGTTCCGGC---TC------------------------------------------------------CAG............................................2211.001100000
..................................................................................................................................................................................................................................................................................................................AC------CGTTTCGCAGCCGGCAC............................................................................................................................................1911.001010000
......................................................................................................................................................................................................................................................................................................................................................AAC------GCTCCGGTTCCGGC---TC------------------------------------------------------...............................................1911.001100000
.........................................................................................................................................................................................................................................CGCCAAGCCGTTGATCCAG...........................................................................................................................................................................................................................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTCCAGCTCCAGCTCCTG..........................20110.091100000
droBip1
CCGTTGGCA-------AA---GCCTCAACATTTT--TTTT--AAA--TAT----ATATCCGTAATATGGATTCCATA--------------------GCATATATTAAA------------CATG----CACAGCCCCCTTCTGG-GG------------------T-----TC-CCACCCATTCCACTA-ACTAAATAATTTTGC-AA---AAACAGAATC-CGAATGCCAACGCCCAGCCGTTGATCCAGCCTCCATTGCAGGCCGCTAAT---GTGGTCCAGA---------ATCAGC------CACAAGCCGCTCCC------------------------------------------------CAGCCGGC------------------------------ACCGGCACC---GGTTGCAGCTC------------CTGCTCCAGTT----CA-----GCAGCAGSizeHit CountTotal NormTotal
No Reads
dp5
TTGCT--------------------TT---TTCT--TGA-------------------------------------------------------------------------------------------------------------------------------------------------TGAATA-ATGAAATTTTTCAA--TA---ATATAGAATC-CGAATGTCCCGGCCAAGCCCTTGATTCAACCGCCGGC---------AAAT---GCT---CTGT---------CGCAG---GCATCTCCAGT---------------------------------------------------------CTCGGC------------------------------GCCTACCCC---GACTCCAGTGC------------CGGCTCCAGTTGCAGTC--AAAGAGGTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................GT---------------------------------------------------------CTCGGC------------------------------GCCTACCCC---GACT................................................2111.0010100000000
................................................................................................................................................................................................................................................................................T---GCT---CTGT---------CGCAG---GCATCTCCAGT---------------------------------------------------------C...................................................................................................2511.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCCAGTGC------------CGGCTCCAGTTGCAG..............2611.0010100000000
droPer2
TTGCT--------------------TT---TTCT--TGA-------------------------------------------------------------------------------------------------------------------------------------------------TGAATA-ATGAAATTTTTCAA--TA---ATTTAGAATC-CGAATGTCGCGGCCAAGCCCTTGATTCAACCGCCGGC---------AAAT---GCT---CTGT---------CGCAG---GCATCTCCAGTG---------------------------------------------------------TCGGC------------------------------GCCTACCCC---GACTCCAGTGC------------CGGCTCCAGTTGCAGTC--AAAGAGGTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................CAACCGCCGGC---------AAAT---GCT---CTGT---------C...............................................................................................................................................................................2312.002200000
.............................................................................................................................................................................................................................................................................AAAT---GCT---CTGT---------CGCAG---GC......................................................................................................................................................................1812.002200000
........................................................................................................................................................................................................................................................TCAACCGCCGGC---------AAAT---GCT---CTGT---------CGC.............................................................................................................................................................................2611.001100000
...............................................................................................................................................................................................................................................................................AT---GCT---CTGT---------CGCAG---GCATCTCCAG..............................................................................................................................................................2411.001010000
.........................................................................................................................................................................................................................................................CAACCGCCGGC---------AAAT---GCT---CTGT---------................................................................................................................................................................................2211.001100000

Generated: 05/17/2015 at 10:54 PM