ID:

dse_864

 Coordinate:

scaffold_15:1362556-1362617 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-9.6 -9.5 -9.3

Flybase annnotation

exon [dsec_GLEANR_11657:3]; exon [dsec_GLEANR_11657:2]; CDS [Dsec\GM11432-cds]; CDS [Dsec\GM11432-cds]; intron [Dsec\GM11432-in]

No Repeatable elements found

mature
  1. scaffold_0:4023041-4023061 +
  2. dse_864  scaffold_15:1362578-1362598 +
star

Sense Strand Reads

##################################################--------------------------------------------------------------##################################################
GTCCAGTGGTCTATATCCGCATTGTGGGCACACGCAACACAGCGAATGAGGTACGTAGCAGTGCAGCAGCCACAAAACATGTGCGTTAAGCTAAAGCTCTCCTTGATCTCAGATCTTCCACTGCGTCCACCTCGAATGTCCCACCCAGGACAAAAACTACTT
**************************************************((((......))))((((((((((.....)))).)))..)))..((.((.....)).))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V113
male body		 V115
head
 V114
embryo
.........TCTATATCCGCATTGTGGGCA.................................................................................................................................... 21 0 3 4.67 14 7 4 2 1
.............TATCCGCATTGTGGGCACACG................................................................................................................................ 21 0 3 4.00 12 6 3 3 0
.............TATCCGCATTGTGGGCACACGT............................................................................................................................... 22 1 3 3.00 9 0 8 1 0
........GTCTATATCCGCATTGTGGGC..................................................................................................................................... 21 0 3 2.67 8 7 0 1 0
GTCCAGTGGTCTATATCCGCA............................................................................................................................................. 21 0 3 2.00 6 1 3 2 0
......TGGTCTATATCCGCATTGTGG....................................................................................................................................... 21 0 3 1.67 5 4 1 0 0
..........CTATATCCGCATTGTGGGCAC................................................................................................................................... 21 0 3 1.33 4 2 0 2 0
...........TATATCCGCATTGTGGGCACA.................................................................................................................................. 21 0 3 1.00 3 3 0 0 0
...........................................................................................................ATGAGATCTTCCACTGCGTCCACCT.............................. 25 2 1 1.00 1 0 0 0 1
.......GGTCTATATCCGCATTGTGGGT..................................................................................................................................... 22 1 3 0.67 2 0 1 1 0
..............ATCCGCATTGTGGGCACACGC............................................................................................................................... 21 0 3 0.67 2 1 1 0 0
.......GGTCTATATCCGCATTGTGGG...................................................................................................................................... 21 0 3 0.67 2 1 0 1 0
..............................CACGCAACACAGCGAATGAGG............................................................................................................... 21 0 3 0.67 2 0 2 0 0
..........................................................................................................AATGAGATCTTCCACTGCGTCC.................................. 22 3 2 0.50 1 0 1 0 0
........................................................................CAAAACATGTGCGTTAAGCTA..................................................................... 21 0 2 0.50 1 0 0 1 0
.....GTGGTCTATATCCGCATTGTG........................................................................................................................................ 21 0 3 0.33 1 1 0 0 0
........GTCTATATCCGCATTGTGG....................................................................................................................................... 19 0 3 0.33 1 1 0 0 0
.............TATCCGCATTGTGGGCACACGTT.............................................................................................................................. 23 2 3 0.33 1 0 1 0 0
...............................ACGCAACACAGCGAATGAGG............................................................................................................... 20 0 3 0.33 1 1 0 0 0
.........TCTATATCCGCATTGTGGGC..................................................................................................................................... 20 0 3 0.33 1 0 1 0 0
.........TCTATATCCGCATTGTGGGCAC................................................................................................................................... 22 0 3 0.33 1 0 1 0 0
..................................CAACACAGCGAATGAGGTTCGT.......................................................................................................... 22 1 3 0.33 1 0 1 0 0
...........................GCACACGCAACACAGCGAATG.................................................................................................................. 21 0 3 0.33 1 0 0 1 0
.............................ACACGCAACACAGCGAATGAG................................................................................................................ 21 0 3 0.33 1 0 0 1 0
.............TATCCGCATTGTGGGCACAC................................................................................................................................. 20 0 3 0.33 1 0 0 1 0
..............ATCCGCATTGTGGGCACACG................................................................................................................................ 20 0 3 0.33 1 1 0 0 0
..............ATCCGCATTGTGGGCACACGTT.............................................................................................................................. 22 2 3 0.33 1 0 1 0 0
........................TGGGCACACGCAACACAGCG...................................................................................................................... 20 0 3 0.33 1 0 0 0 1
..................................CAACACAGCGAATGAGGTTCGTA......................................................................................................... 23 1 3 0.33 1 0 1 0 0
.............TATCCGCATTGTGGGCACACGTA.............................................................................................................................. 23 1 3 0.33 1 0 1 0 0
........GTCTATATCCGCATTGTGGGCT.................................................................................................................................... 22 1 3 0.33 1 0 1 0 0
................................CGCAACACAGCGAATGAGGT.............................................................................................................. 20 0 3 0.33 1 0 0 0 1
..............................CACGCAACACAGCGAATGAG................................................................................................................ 20 0 3 0.33 1 0 0 1 0
............ATATCCGCATTGTGGGCACAC................................................................................................................................. 21 0 3 0.33 1 1 0 0 0
.........TCTATATCCGCATTGTGGGAA.................................................................................................................................... 21 1 3 0.33 1 0 1 0 0
..........CTATATCCGCATTGTGGGCACACGC............................................................................................................................... 25 0 3 0.33 1 0 0 1 0
........................TGGGCACACGCAACACAGCGT..................................................................................................................... 21 1 3 0.33 1 0 0 1 0
..................................CAACACAGCGAATGGGGTTCGT.......................................................................................................... 22 2 3 0.33 1 0 1 0 0
..........CTATATCCGCATTGTGGGC..................................................................................................................................... 19 0 3 0.33 1 0 0 1 0
...CAGTGGTCTATATCCGCAT............................................................................................................................................ 19 0 3 0.33 1 1 0 0 0
.........TCTATATCCGCATTGTGGG...................................................................................................................................... 19 0 3 0.33 1 1 0 0 0
............ATATCCGCATTGTGGGCATT.................................................................................................................................. 20 2 4 0.25 1 0 0 1 0
.............................................ATGAGGAACGCAGCAGTGC.................................................................................................. 19 2 6 0.17 1 0 0 0 1
...................................................................................................................ATCCACTCCGTCCACCTCT............................ 19 3 20 0.05 1 1 0 0 0

Anti-sense strand reads

CAGGTCACCAGATATAGGCGTAACACCCGTGTGCGTTGTGTCGCTTACTCCATGCATCGTCACGTCGTCGGTGTTTTGTACACGCAATTCGATTTCGAGAGGAACTAGAGTCTAGAAGGTGACGCAGGTGGAGCTTACAGGGTGGGTCCTGTTTTTGATGAA
**************************************************((((......))))((((((((((.....)))).)))..)))..((.((.....)).))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V113
male body		 V115
head
 M054
female body
 V114
embryo
...............................TGCGTTGTGTCGCTTACTCCA.............................................................................................................. 21 0 3 11.67 35 24 11 0 0
......ACCAGATATAGGCGTAACACC....................................................................................................................................... 21 0 3 7.67 23 14 9 0 0
..............................TTGCGTTGTGTCGCTTACTCCA.............................................................................................................. 22 1 3 5.00 15 10 5 0 0
..TGTCACCAGATATAGGCGTAAC.......................................................................................................................................... 22 1 3 4.00 12 11 1 0 0
...........................CGTGTGCGTTGTGTCGCTT.................................................................................................................... 19 0 3 1.67 5 0 4 1 0
.........................CCCGTGTGCGTTGTGTCGCTT.................................................................................................................... 21 0 3 1.67 5 1 3 1 0
....................................................................................................................AAGAGACGCAGATGGAGCTTA......................... 21 3 2 1.50 3 3 0 0 0
.............................TGTGCGTTGTGTCGCTTACTC................................................................................................................ 21 0 3 1.33 4 3 0 1 0
..GGTCACCAGATATAGGCGTAA........................................................................................................................................... 21 0 3 1.33 4 1 0 3 0
.............ATAGGCGTAACACCCGTGTGC................................................................................................................................ 21 0 3 1.33 4 0 1 3 0
.........................TCCGTGTGCGTTGTGTCGCTT.................................................................................................................... 21 1 3 1.33 4 2 2 0 0
.AGGTCACCAGATATAGGCGTA............................................................................................................................................ 21 0 3 1.33 4 4 0 0 0
.....CACCAGATATAGGCGTAACAC........................................................................................................................................ 21 0 3 1.00 3 2 0 1 0
......................................................................................................................GAGACGCAGATGGAGCTTAC........................ 20 2 1 1.00 1 0 1 0 0
...........ATATAGGCGTAACACCCGTGT.................................................................................................................................. 21 0 3 1.00 3 0 1 2 0
......ACCAGATATAGGCGTAACAC........................................................................................................................................ 20 0 3 1.00 3 2 1 0 0
CAGGTCACCAGATATAGGCGT............................................................................................................................................. 21 0 3 1.00 3 1 1 1 0
............................GTGTGCGTTGTGTCGCTTACT................................................................................................................. 21 0 3 1.00 3 1 1 1 0
.........................................................CGTCACGTCGTCGGTGTTTTG.................................................................................... 21 0 3 1.00 3 0 2 1 0
..GGTCACCAGATATAGGCGTAAC.......................................................................................................................................... 22 0 3 0.67 2 0 0 2 0
.......................CACCCGTGTGCGTTGTGTCGC...................................................................................................................... 21 0 3 0.67 2 0 2 0 0
...............................TGCGTTGTGTCGCTTACTCC............................................................................................................... 20 0 3 0.67 2 2 0 0 0
..................CGTAACACCCGTGTGCGTTGT........................................................................................................................... 21 0 3 0.67 2 0 2 0 0
...GTCACCAGATATAGGCGTAAC.......................................................................................................................................... 21 0 3 0.67 2 1 0 1 0
..............................GTGCGTTGTGTCGCTTACTCC............................................................................................................... 21 0 3 0.67 2 0 2 0 0
.......CCAGATATAGGCGTAACACCC...................................................................................................................................... 21 0 3 0.67 2 2 0 0 0
................GGCGTAACACCCGTGTGCGT.............................................................................................................................. 20 0 3 0.67 2 0 2 0 0
..........................CCGTGTGCGTTGTGTCGCTT.................................................................................................................... 20 0 3 0.67 2 2 0 0 0
..............................GTGCGTTGTGTCGCTTACTC................................................................................................................ 20 0 3 0.67 2 1 0 1 0
....TCACCAGATATAGGCGTAAC.......................................................................................................................................... 20 0 3 0.67 2 1 1 0 0
......................ACACCCGTGTGCGTTGTGTCG....................................................................................................................... 21 0 3 0.67 2 1 0 0 1
..........................CCGTGTGCGTTGTGTCGCTTA................................................................................................................... 21 0 3 0.67 2 0 0 2 0
.....................................................................................................................AGAGACGCAGATGGAGCTTA......................... 20 3 4 0.50 2 0 0 2 0
......................................................................................................................GAGACGCAGATGGAGCTTA......................... 19 2 2 0.50 1 0 0 1 0
.......................................................AACGTCACGTCGTCGGTGT........................................................................................ 19 1 2 0.50 1 0 1 0 0
.......................................................................................................................AGACGCAGATGGAGCTTAC........................ 19 2 2 0.50 1 1 0 0 0
......ACCAGATATAGGCGTAACA......................................................................................................................................... 19 0 3 0.33 1 1 0 0 0
........................ACCCGTGTGCGTTGTGTCG....................................................................................................................... 19 0 3 0.33 1 1 0 0 0
..TGTCACCAGATATAGGCGTA............................................................................................................................................ 20 1 3 0.33 1 0 1 0 0
...........................TGTGTGCGTTGTGTCGCTTACT................................................................................................................. 22 1 3 0.33 1 1 0 0 0
...............CGGCGTAACACCCGTGTGCGTT............................................................................................................................. 22 1 3 0.33 1 1 0 0 0
..............................ATGCGTTGTGTCGCTTACTCCA.............................................................................................................. 22 1 3 0.33 1 1 0 0 0
........................TTCCGTGTGCGTTGTGTCGCTT.................................................................................................................... 22 2 3 0.33 1 0 1 0 0
...........................CGTGTGCGTTGTGTCGCTTACT................................................................................................................. 22 0 3 0.33 1 1 0 0 0
....TCACCAGATATAGGCGTAACA......................................................................................................................................... 21 0 3 0.33 1 0 1 0 0
..............TAGGCGTAACACCCGTGTGC................................................................................................................................ 20 0 3 0.33 1 0 0 1 0
...............AGGCGTAACACCCGTGTCCGT.............................................................................................................................. 21 1 3 0.33 1 1 0 0 0
...............AGGCGTAACACCCGTGTGCGT.............................................................................................................................. 21 0 3 0.33 1 0 0 1 0
..............TAGGCGCAACACCCGTGTGC................................................................................................................................ 20 1 3 0.33 1 1 0 0 0
...............TGGCGTAACACCCGAGTGCGTT............................................................................................................................. 22 2 3 0.33 1 0 0 1 0
.TGGTCACCAGATATAGGCGTAA........................................................................................................................................... 22 1 3 0.33 1 1 0 0 0
...............TGGCGTAACACCCGTGTGCGTT............................................................................................................................. 22 1 3 0.33 1 0 1 0 0
...........................TGTGTGCGTTGTGTCGCTT.................................................................................................................... 19 1 3 0.33 1 0 1 0 0
.....CACCAGATATAGGCGTAACA......................................................................................................................................... 20 0 3 0.33 1 1 0 0 0
...............................TGCGTTGTGCCGCTTACTCCA.............................................................................................................. 21 1 3 0.33 1 0 1 0 0
.......................TTCCCGTGTGCGTTGTGTCGCTT.................................................................................................................... 23 2 3 0.33 1 0 1 0 0
...........................CGTGTGCGTTGTGTCGCTTAC.................................................................................................................. 21 0 3 0.33 1 0 1 0 0
.............................ATTGCGTTGTGTCGCTTACTCCA.............................................................................................................. 23 2 3 0.33 1 1 0 0 0
....TCACCAGATATAGGCGTAACAC........................................................................................................................................ 22 0 3 0.33 1 0 1 0 0
.............................TGTGCGTTGTGTCGCTTACTCC............................................................................................................... 22 0 3 0.33 1 1 0 0 0
.AGGTCACCAGATATAGGCGT............................................................................................................................................. 20 0 3 0.33 1 0 1 0 0
............TATAGGCGTAACACCCGTGTG................................................................................................................................. 21 0 3 0.33 1 0 0 1 0
TAGGTCACCAGATATAGGCGTAAC.......................................................................................................................................... 24 1 3 0.33 1 1 0 0 0
......ACCAGATATAGGTGTAACACC....................................................................................................................................... 21 1 3 0.33 1 1 0 0 0
...............................TGCGTTTTGTCGCTTACTCCA.............................................................................................................. 21 1 3 0.33 1 0 0 1 0
..........GATATAGGCGTAACACCCGT.................................................................................................................................... 20 0 3 0.33 1 0 0 1 0
...........................CGTGTGCGTTGTGTCGCTTA................................................................................................................... 20 0 3 0.33 1 1 0 0 0
.ATGTCACCAGATATAGGCGTAAC.......................................................................................................................................... 23 1 3 0.33 1 1 0 0 0
............TATAGGCGTAACACCCGTGT.................................................................................................................................. 20 0 3 0.33 1 0 1 0 0
..........................................................GTCACGTCGTCGGTGTTTTGT................................................................................... 21 0 3 0.33 1 0 0 1 0
..............TAGGCGTAACACCCGTGTGCGT.............................................................................................................................. 22 0 3 0.33 1 0 0 1 0
.........................................................CGTCATGTCGTCGGTGTTTT..................................................................................... 20 1 3 0.33 1 0 0 1 0
..TGTCACCAGATACAGGCGTAAC.......................................................................................................................................... 22 2 3 0.33 1 1 0 0 0
.........................................................CGTCACGTCGTCGGTGTT....................................................................................... 18 0 3 0.33 1 0 0 1 0
......ACCCGATATAGGCGTAACACC....................................................................................................................................... 21 1 3 0.33 1 1 0 0 0
..........................TTGTGTGCGTTGTGTCGCTTACT................................................................................................................. 23 2 3 0.33 1 1 0 0 0
.........................CCCGTGTGCGTTGTGTCGC...................................................................................................................... 19 0 3 0.33 1 0 1 0 0
..............................TTGCGTTGTGTCGCTTACCCCA.............................................................................................................. 22 2 3 0.33 1 1 0 0 0
....TCAACAGATCTAGGCGTAACAC........................................................................................................................................ 22 2 3 0.33 1 1 0 0 0
................GGCGTAACACCCGTGTGCGTT............................................................................................................................. 21 0 3 0.33 1 0 0 1 0
...................................................TTGCGTCGTCACGTCGTCGGT.......................................................................................... 21 2 4 0.25 1 0 1 0 0
.....................................................................................................................AGAGACGCAGATGGAGCTT.......................... 19 3 9 0.22 2 0 0 2 0
............................................................CCCGTCGTCGGTGTTTTGT................................................................................... 19 1 5 0.20 1 0 0 1 0
..........................................................GTCACGTCGTCGGTTTTTG..................................................................................... 19 2 13 0.08 1 0 0 1 0
......................................................................................................................GAGACGCAGATGGAGCTGAC........................ 20 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_15:1362506-1362667 + dse_864 GTCCAGTGGTCTATATCCGCATTGTGGGCACACGCAACACAGCGAATGAGGTACGTAGCAG---TG--CAGCAG----------------------------------------------------------CCACAAAACATGTG---C--GTTAAGC----TAAAG--CTC-----------------------------TCCTTG--ATCTCAGATCTTCCACTGCGTCCACCTCGAATGTCCCACCCAGGACAAAAACTACTT
droSim2 x:10122758-10122919 + dsi_10965 GTCCAGTGGTCTATATCCGCATTGTGGGCACACGCAACACAGCGAATGAGGTACGTAGCAG---TG--CAGCAG----------------------------------------------------------CCACAAAACATGTG---C--GTTAAGC----TAATG--CTC-----------------------------TCCTTG--CTCTCAGATCTTCCACTGCGTCCACCTCGAATGTCCCACCCAGGACAAAAACTACTT
dm3 chrX:10664485-10664645 + GTCCAGTGGTCTATATCCGCATTGTGGGCACACGCAACACAGCGAATGAGGTACGTAGCAG---TG--CAGC----------------------------------------------------G-------CCACAAAACATGTC---C--GATAAGC----TAATG--CTC-----------------------------TCCTTG--CTCTTAGATCTTCCACTGCGTCCACCTCGAATGTCCGACCCAGGACAAAAACTACTT
droEre2 scaffold_4690:4466236-4466395 - GTCCCGTGGTCTTCATCCGCATTGTGGGCACGCGCAACACAGCGAATGAGGTACGTAGCAG---TG--CAGCAG----------------------------------------------------------TCACAAAACAAAAG---A--GATTAGC----TAA----TTG-----------------------------TTCCTG--CTCTCAGATCTTCCACTGCGTCCACCTTGAATGCCCCACCCAGGACAAGAGCTACTT
droYak3 X:19233993-19234153 + GTCCCGTCGTCTTTATCCGCATTGTGGGCACGCGCAACACAGCGAATGAGGTATGTAGCAG---TG--CAGCAGTGGC------AT---------------------------------------------------CACTAAGAG---A--GATTAGC----TAA----CAG-----------------------------TTCTTG--CTTACAGATCTTTCACTGCGTCCACCTCGAATGCCCCACCCAGGACAAGAGCTACCT
droEug1 scf7180000409538:22542-22703 - GTCCCGTGGTCTTTATACGCATTGTGGGCACTCGTAACACAGCGAATGAGGTAGATATTCAATGAG-----TT--AAATACAATTT--------------------------TT---------CA----------------------TTTC-GA-TAGT----TAATA----A-----------------------------ACTTTT--CCTTTAGATCTTCCATTGCGTGCACCTTGAGTGTCCCACCCAGGACAAGTGCTACTT
droBia1 scf7180000302126:3595561-3595715 + GCCCTGTCGTCTTTATCCGCATTGTGGGCACCCGGAACACAGCCAATGAGGTGAGATTTCG---G------C------------TT-------------------------------------------------CAATTTTTGTGATTTC-GTTACAC----TAAG-----------------------------------TTTTTT--CTTTCAGATCTTCCATTGCGTCCACCTGGAGTGTCCCACCCAGGACAAGGGTTACCT
droTak1 scf7180000415394:502015-502172 + GCCCCGTCGTCTTTATCCGCATTGTGGGCACCCGGAATACAGCAAATGAGGTGGGATTCTT---TG--TATC-------------T----------------------------TAACGTTAAC-----------------A-----TTC--GGTTACT----TAGTG----C-----------------------------TCTTTG--CTTTCAGATCTTCCACTGCGTCCATTTGGAGTGTCCCACCCAGGACAAGAGTTACCT
droEle1 scf7180000491043:138598-138767 + GTCCCGTGGTTTTCATCCGCATCGTTGGCACCCGCAACACGGCGAATGAGGTGCATAAGAT---CG--TT---------------TTG--CTTT-----------------G--------------TGAGAT--T--------------TC-GT-AAGT----TTATA----ATTTGCCTTGCT------------------TCCTTGCTTTTTTAGATCTTCCATTGCGTCCACCTGGAGTGTCCCACCCAGGACAAGTGCTACCT
droRho1 scf7180000779333:787279-787437 - GTCCCGTGGTCTTCATCCGCATCGTGGGCACCCGCAACACGGCGAATGAGGTGAGCAG------TG--CGAC------------TT-GATGTCT-----------------G--------------TGGGAT--T--------------TC-ATTTAGT----TTATG----A-----------------------------TTCTTG--CCTTTAGATCTTTCATTGCGTCCACCTGGAATGTCCCACACAGGACAAGTGCTACTT
droFic1 scf7180000453882:514803-514958 + GCCCGGTGGTCTTCATCCGCATCGTGGGCACTCGCAACACGGCGAATGAGGTGGGTATTTG---T------CAG-----------------TCAGTAG--------------AG---------CG----------------------AAACA---AAAC----TAAGG--TTT-----------------------------TGCTTC--ATTTTAGATCTTCCATTGCGTTCACCTTGAATGTCCGACGCAGGACAAGTTCTACCT
droKik1 scf7180000302517:143287-143446 + GTCCCGTGGTCTTTATACGCATCGTGGGCACCAGGAACACGGCGAATGAGGTGAGTTTCCTAGAAGTCT---T--A----------------------------------------------------------CGACTTTTTAAG---A--ACTTTAC----TTA----TCT-----------------------------AAACTG--CTTGCAGATCTTTCATTGTGTCCATTTGGAGTGTCCCACGCAGGACAAGGGCTATCT
droAna3 scaffold_13417:1251072-1251227 + GACCCGTCGTCTTTATCCGCATCGTCGGCACCCACAACACTGCGAACGAGGTGAGCCATGG---C------C------------TT----------------------------CGGTAAAGAA-G------TTGCA------------G--GAGGTCCTAAT---------------------------------------TGATCC--ATTTCAGATATTCCACTGCGTCCACCTCGAGTGCCCCACCCAGGACAAAAGCTACCT
droBip1 scf7180000395921:8517-8672 - GTCCTGTCGTCTTTATCCGCATCGTGGGCACCCGCAACACGGCGAACGAGGTGAGCTATGC---C------C------------AT----------------------------TAATTAAAGG-A------TTGGA------------G--TATTTCCTAAT---------------------------------------CGATCT--ATTTCAGATATTCCACTGTGTCCACCTTGAGTGCCCCACCCAGGACAAGAGCTATCT
dp5 XL_group1e:5990295-5990462 + GGCCCGTTGTCTTCATACGGATTGTGGGCACCAGGAATACCGCGAATGAGGTAAGCAATTG---C------C-----------------TGTCCGTTGGCTTGGCCGGTGC-CG---------CG----------------------AATCA---AC------TCATG--------------AC----------------TAGTCCCA--AATACAGATATTCCACTGCGTCCATCTCGAGTGCCCGTCGCAGGACAAGAGCTACCT
droPer2 scaffold_21:948510-948677 + GGCCCGTTGTCTTCATACGGATTGTAGGCACCAGGAATACCGCGAATGAGGTAAGCAATTG---C------C-----------------TGTCCGTTGGCTTGGCCGGTGC-CG---------CG----------------------AATCA---AC------TCATG--------------AC----------------TAGTCCCA--AATACAGATATTCCACTGCGTCCATCTCGAGTGCCCGTCGCAGGACAAGAGCTACCT
droWil2 scf2_1100000004590:414859-415018 + GTCCTGTGGTCTTTATACGTATTGTGGGTACACGGAATACGGCCAATGAGGTAAACTGCTT---TC--TG--------------------------------------------------------TAAAAC--CCTAAAAGACAG---G--AACT----AATCGA----CTC-----------------------------TTCATT--TATTTAGATCTTTCACTGCGTGCATTTGGAGTGTCCCAGTCAAGATAAGAGTTATTT
droVir3 scaffold_13042:1668988-1669142 + GTCCCATTGTCTTTATACGCATTGTGGGCACACGCAATACGGCAAACGAGGTAGGTCC-----------GAAAG-----------------TCA----------TCAAAGC-TT---------CG----------------------ATACA---ATACTGAT-------------------------------------TAGGCTAT--TCCATAGATATTTCACTGCGTTCATCTGGAGTGCCCCACACAGGACGAGAACTATCT
droMoj3 scaffold_6359:1600933-1601092 + GACCCATTGTCTTCATACGAATCGTGGGCACTCGCAATACGGCAAATGAGGCGCGTCCAAAGAAAG-----TT--G----------------------------------------------------------AGAATACTTAAG---G--TATAGAT----TAATGAAT-------------------------------GTATAC--TTCACAGATATTCCATTGTGTGCACCTGGAATGCCCCAGTCAGGACAAGAGCTTTTT
droGri2 scaffold_15081:2617313-2617486 + GCCCCATTGTCTTCATACGCATTGTGGGCACGCGGAACACGGCAAATGAGGTATGTAGGCA---TA--TA---------------T--GTGTGT-----------------G--------------TGGGATAT-----GCA-------T--ATCC----AAG-------CGG-----------TTCTCAATTCTGTATG--TGTTAC--ATTGCAGATATTTCACTGTGTTCATCTCGAGTGCCCCACGCAGGACAAGAACTACCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GTCCAGTGGTCTATATCCGCATTGTGGGCACACGCAACACAGCGAATGAGGTACGTAGCAG---TG--CAGCAG----------------------------------------------------------CCACAAAACATGTG---C--GTTAAGC----TAAAG--CTC-----------------------------TCCTTG--ATCTCAGATCTTCCACTGCGTCCACCTCGAATGTCCCACCCAGGACAAAAACTACTTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........TCTATATCCGCATTGTGGGCA.............................................................................................................................................................................................................................................2134.67147412
.............TATCCGCATTGTGGGCACACG.........................................................................................................................................................................................................................................2134.00126303
.............TATCCGCATTGTGGGCACACGT........................................................................................................................................................................................................................................2233.0090801
........GTCTATATCCGCATTGTGGGC..............................................................................................................................................................................................................................................2132.6787001
GTCCAGTGGTCTATATCCGCA......................................................................................................................................................................................................................................................2132.0061302
......TGGTCTATATCCGCATTGTGG................................................................................................................................................................................................................................................2131.6754100
..........CTATATCCGCATTGTGGGCAC............................................................................................................................................................................................................................................2131.3342002
...........TATATCCGCATTGTGGGCACA...........................................................................................................................................................................................................................................2131.0033000
.......GGTCTATATCCGCATTGTGGGT..............................................................................................................................................................................................................................................2230.6720101
..............ATCCGCATTGTGGGCACACGC........................................................................................................................................................................................................................................2130.6721100
.......GGTCTATATCCGCATTGTGGG...............................................................................................................................................................................................................................................2130.6721001
..............................CACGCAACACAGCGAATGAGG........................................................................................................................................................................................................................2130.6720200
.......................................................................................................................................CAAAACATGTG---C--GTTAAGC----TA......................................................................................................2120.5010001
.....GTGGTCTATATCCGCATTGTG.................................................................................................................................................................................................................................................2130.3311000
........GTCTATATCCGCATTGTGG................................................................................................................................................................................................................................................1930.3311000
.............TATCCGCATTGTGGGCACACGTT.......................................................................................................................................................................................................................................2330.3310100
...............................ACGCAACACAGCGAATGAGG........................................................................................................................................................................................................................2030.3311000
.........TCTATATCCGCATTGTGGGC..............................................................................................................................................................................................................................................2030.3310100
.........TCTATATCCGCATTGTGGGCAC............................................................................................................................................................................................................................................2230.3310100
...........................GCACACGCAACACAGCGAATG...........................................................................................................................................................................................................................2130.3310001
.............................ACACGCAACACAGCGAATGAG.........................................................................................................................................................................................................................2130.3310001
.............TATCCGCATTGTGGGCACAC..........................................................................................................................................................................................................................................2030.3310001
..............ATCCGCATTGTGGGCACACG.........................................................................................................................................................................................................................................2030.3311000
..............ATCCGCATTGTGGGCACACGTT.......................................................................................................................................................................................................................................2230.3310100
........................TGGGCACACGCAACACAGCG...............................................................................................................................................................................................................................2030.3310010
........GTCTATATCCGCATTGTGGGCT.............................................................................................................................................................................................................................................2230.3310100
................................CGCAACACAGCGAATGAGGT.......................................................................................................................................................................................................................2030.3310010
..............................CACGCAACACAGCGAATGAG.........................................................................................................................................................................................................................2030.3310001
............ATATCCGCATTGTGGGCACAC..........................................................................................................................................................................................................................................2130.3311000
..........CTATATCCGCATTGTGGGCACACGC........................................................................................................................................................................................................................................2530.3310001
........................TGGGCACACGCAACACAGCGT..............................................................................................................................................................................................................................2130.3310001
..........CTATATCCGCATTGTGGGC..............................................................................................................................................................................................................................................1930.3310001
...CAGTGGTCTATATCCGCAT.....................................................................................................................................................................................................................................................1930.3311000
.........TCTATATCCGCATTGTGGG...............................................................................................................................................................................................................................................1930.3311000
............ATATCCGCATTGTGGGCATT...........................................................................................................................................................................................................................................2040.2510001
droSim2
GTCCAGTGGTCTATATCCGCATTGTGGGCACACGCAACACAGCGAATGAGGTACGTAGCAG---TG--CAGCAG----------------------------------------------------------CCACAAAACATGTG---C--GTTAAGC----TAATG--CTC-----------------------------TCCTTG--CTCTCAGATCTTCCACTGCGTCCACCTCGAATGTCCCACCCAGGACAAAAACTACTTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........TCTATATCCGCATTGTGGGCAT............................................................................................................................................................................................................................................223182.335471000000000000546000
.........TCTATATCCGCATTGTGGGCA.............................................................................................................................................................................................................................................213107.0032135121000000000299010
.TCCAGTGGTCTATATCCGCAT.....................................................................................................................................................................................................................................................21349.671490000146200000001000
.........TCTATATCCGCATTGTGGGCAC............................................................................................................................................................................................................................................22334.00102000080000000094000
.........TCTATATCCGCATTGTGG................................................................................................................................................................................................................................................18331.6795000092210000000000
.........TCTATATCCGCATTGTGGG...............................................................................................................................................................................................................................................19320.6762000062000000000000
..............................CACGCAACACAGCGAATGAGG........................................................................................................................................................................................................................21316.6750000048010000001000
...CAGTGGTCTATATCCGCATTG...................................................................................................................................................................................................................................................21316.3349000146200000000000
....AGTGGTCTATATCCGCATTGT..................................................................................................................................................................................................................................................21316.3349000048000000001000
.........TCTATATCCGCATTGTGGGCATT...........................................................................................................................................................................................................................................23314.0042000000000000042000
.........TCTATATCCGCATTGTGGGCAA............................................................................................................................................................................................................................................22313.6741000000000000041000
........GTCTATATCCGCATTGTGGGC..............................................................................................................................................................................................................................................21313.67411216024000000007000
..............................CACGCAACACAGCGAATGA..........................................................................................................................................................................................................................19313.0039000036300000000000
........................TGGGCACACGCAACACAGCGA..............................................................................................................................................................................................................................21312.67380001270000000010000
.............................ACACGCAACACAGCGAATGAG.........................................................................................................................................................................................................................21312.6738000033300001001000
............................CACACGCAACACAGCGAATGA..........................................................................................................................................................................................................................21311.0033000030300000000000
GTCCAGTGGTCTATATCC.........................................................................................................................................................................................................................................................18310.6732000032000000000000
...............TCCGCATTGTGGGCACACGCAT......................................................................................................................................................................................................................................2239.3328000000000000028000
..........................GGCACACGCAACACAGCGAAT............................................................................................................................................................................................................................2139.0027000024300000000000
..............................CACGCAACACAGCGAATGAG.........................................................................................................................................................................................................................2039.0027000027000000000000
.............TATCCGCATTGTGGGCACACG.........................................................................................................................................................................................................................................2138.3325115000000000009000
............ATATCCGCATTGTGGGCACAC..........................................................................................................................................................................................................................................2138.0024020018000000004000
................................CGCAACACAGCGAATGAGG........................................................................................................................................................................................................................1938.0024000024000000000000
GTCCAGTGGTCTATATCCGCA......................................................................................................................................................................................................................................................2137.6723000020001000002000
................................CGCAACACAGCGAATGAGGTA......................................................................................................................................................................................................................2127.5015000020000000013000
.........TCTATATCCGCATTGTGGGC..............................................................................................................................................................................................................................................2037.3322480010000000000000
........................................................................AG----------------------------------------------------------CCACAAAACATGTG---C--GTTA...............................................................................................................2127.0014000014000000000000
.............................ACACGCAACACAGCGAATGA..........................................................................................................................................................................................................................2037.0021000021000000000000
................................CGCAACACAGCGAATGAG.........................................................................................................................................................................................................................1837.0021000021000000000000
..CCAGTGGTCTATATCCGCATT....................................................................................................................................................................................................................................................2136.3319000014000000005000
......TGGTCTATATCCGCATTGT..................................................................................................................................................................................................................................................1936.0018000018000000000000
.TCCAGTGGTCTATATCCGCA......................................................................................................................................................................................................................................................2036.0018000018000000000000
....................................................................................................................................CCACAAAACATGTG---C--GTTAAGC----........................................................................................................2226.0012000012000000000000
GTCCAGTGGTCTATATCCGC.......................................................................................................................................................................................................................................................2036.0018000018000000000000
....................................................................................................................................CCACAAAACATGTG---C--GTTAAG.............................................................................................................2126.0012000012000000000000
......TGGTCTATATCCGCATTGTGG................................................................................................................................................................................................................................................2135.6717000140010100010000
...............TCCGCATTGTGGGCACACGCA.......................................................................................................................................................................................................................................2135.3316000000000000016000
........GTCTATATCCGCATTGTGG................................................................................................................................................................................................................................................1935.3316000012400000000000
.....GTGGTCTATATCCGCATTGTG.................................................................................................................................................................................................................................................2134.6714000012200000000000
.TCCAGTGGTCTATATCCGC.......................................................................................................................................................................................................................................................1934.6714000014000000000000
...CAGTGGTCTATATCCGCATT....................................................................................................................................................................................................................................................2034.6714000014000000000000
.TCCAGTGGTCTATATCCG........................................................................................................................................................................................................................................................1834.6714000012200000000000
........................TGGGCACACGCAACACAGC................................................................................................................................................................................................................................1934.3313000012000000001000
..............ATCCGCATTGTGGGCACA...........................................................................................................................................................................................................................................1834.0012000012000000000000
................................................................TG--CAGCAG----------------------------------------------------------CCACAAAACATGT..........................................................................................................................2124.00800008000000000000
........................................AGCGAATGAGGTACGTAGCAG---...........................................................................................................................................................................................................2114.00400004000000000000
........................TGGGCACACGCAACACAG.................................................................................................................................................................................................................................1834.0012000012000000000000
......TGGTCTATATCCGCATTGTG.................................................................................................................................................................................................................................................2033.671100008200000001000
...........................................................AG---TG--CAGCAG----------------------------------------------------------CCACAAAACATG...........................................................................................................................2223.50700006000000001000
.............TATCCGCATTGTGGGCACACGT........................................................................................................................................................................................................................................2233.3310000000000000010000
...........TATATCCGCATTGTGGGCAC............................................................................................................................................................................................................................................2033.331021006000000001000
..........................................................CAG---TG--CAGCAG----------------------------------------------------------CCACAAA................................................................................................................................1833.00900006300000000000
..........CTATATCCGCATTGTGGGCAC............................................................................................................................................................................................................................................2133.00916000000000002000
.............TATCCGCATTGTGGGCAC............................................................................................................................................................................................................................................1833.00900009000000000000
................................................................TG--CAGCAG----------------------------------------------------------CCACAAAACATG...........................................................................................................................2023.00600006000000000000
.......................GTGGGCACACGCAACACAGCG...............................................................................................................................................................................................................................2133.00900009000000000000
.........TCTATATCCGCATTGTGGGCT.............................................................................................................................................................................................................................................2132.67802000000000006000
..............ATCCGCATTGTGGGCACACGC........................................................................................................................................................................................................................................2132.67801003000000004000
....AGTGGTCTATATCCGCAT.....................................................................................................................................................................................................................................................1832.67800008000000000000
...........TATATCCGCATTGTGGGCACA...........................................................................................................................................................................................................................................2132.67800000000001016000
...CAGTGGTCTATATCCGCA......................................................................................................................................................................................................................................................1832.67800008000000000000
.....GTGGTCTATATCCGCATT....................................................................................................................................................................................................................................................1832.67800008000000000000
....AGTGGTCTATATCCGCATTG...................................................................................................................................................................................................................................................2032.67800006200000000000
.......GGTCTATATCCGCATTGT..................................................................................................................................................................................................................................................1832.67800008000000000000
.TCCAGTGGTCTATATCCGCATT....................................................................................................................................................................................................................................................2232.67800008000000000000
...........................GCACACGCAACACAGCGAATG...........................................................................................................................................................................................................................2132.33700006000000001000
..............................CACGCAACACAGCGAATG...........................................................................................................................................................................................................................1832.00600006000000000000
..........................GGCACACGCAACACAGCG...............................................................................................................................................................................................................................1832.00600006000000000000
..........................GGCACACGCAACACAGCGAA.............................................................................................................................................................................................................................2032.00600006000000000000
........GTCTATATCCGCATTGTG.................................................................................................................................................................................................................................................1832.00600006000000000000
......................................ACAGCGAATGAGGTACGT...................................................................................................................................................................................................................1812.00200002000000000000
..........................GGCACACGCAACACAGCGA..............................................................................................................................................................................................................................1932.00600006000000000000
............ATATCCGCATTGTGGGCAC............................................................................................................................................................................................................................................1932.00600006000000000000
..............ATCCGCATTGTGGGCACACG.........................................................................................................................................................................................................................................2032.00602103000000000000
.............TATCCGCATTGTGGGCACACGC........................................................................................................................................................................................................................................2232.00600000300000003000
............ATATCCGCATTGTGGGCACA...........................................................................................................................................................................................................................................2032.00600003000000003000
.......GGTCTATATCCGCATTGTG.................................................................................................................................................................................................................................................1932.00600006000000000000
..............................CACGCAACACAGCGAATGAGGT.......................................................................................................................................................................................................................2222.00400004000000000000
................................................................TG--CAGCAG----------------------------------------------------------CCACAAAACATGTG---C--G..................................................................................................................2422.00400004000000000000
........................TGGGCACACGCAACACAGCG...............................................................................................................................................................................................................................2032.00600006000000000000
..CCAGTGGTCTATATCCGCA......................................................................................................................................................................................................................................................1932.00600006000000000000
GTCCAGTGGTCTATATCCG........................................................................................................................................................................................................................................................1932.00600006000000000000
......TGGTCTATATCCGCATTG...................................................................................................................................................................................................................................................1832.00600004200000000000
........................................................AGCAG---TG--CAGCAG----------------------------------------------------------CCACAAA................................................................................................................................2032.00600006000000000000
....................................................................................................................................CCACAAAACATGTG---C--GTT................................................................................................................1822.00400004000000000000
...........................................................AG---TG--CAGCAG----------------------------------------------------------CCACAAAACAT............................................................................................................................2122.00400004000000000000
.......................GTGGGCACACGCAACACAGC................................................................................................................................................................................................................................2032.00600006000000000000
.......GGTCTATATCCGCATTGTGGG...............................................................................................................................................................................................................................................2132.00600010000000005000
...........TATATCCGCATTGTGGGCAT............................................................................................................................................................................................................................................2031.67500000000000005000
..........CTATATCCGCATTGTGGGCAT............................................................................................................................................................................................................................................2131.67500000000000005000
.......................................................................CAG----------------------------------------------------------CCACAAAACATGTG---C--GTTA...............................................................................................................2221.50300002000000001000
...............TCCGCATTGTGGGCACACGCAA......................................................................................................................................................................................................................................2231.33400000000000004000
........................TGGGCACACGCAACACAGCGAA.............................................................................................................................................................................................................................2231.33400000000000004000
....................ATTGTGGGCACACGCAACACA..................................................................................................................................................................................................................................2131.33400003000000001000
..CCAGTGGTCTATATCCGC.......................................................................................................................................................................................................................................................1831.33400004000000000000
...............TCCGCATTGTGGGCACACGCATTT....................................................................................................................................................................................................................................2431.33400000000000004000
...........TATATCCGCATTGTGGGCATT...........................................................................................................................................................................................................................................2141.25500000000000005000
....................................................................CAGCAG----------------------------------------------------------CCACAAAACATGTG---C--GT.................................................................................................................2321.00200000000000002000
.............TATCCGCATTGTGGGCACA...........................................................................................................................................................................................................................................1931.00300003000000000000
............................................................G---TG--CAGCAG----------------------------------------------------------CCACAAAACAT............................................................................................................................2021.00200002000000000000
........................................................................AG----------------------------------------------------------CCACAAAACATGTG---C--G..................................................................................................................1821.00200002000000000000
....................................ACACAGCGAATGAGGTAC.....................................................................................................................................................................................................................1821.00200002000000000000
.........TCTATATCCGCATTGTGGGCATTT..........................................................................................................................................................................................................................................2441.00400000000000004000
................................CGCAACACAGCGAATGAGGTAC.....................................................................................................................................................................................................................2221.00200002000000000000
................CCGCATTGTGGGCACACGCA.......................................................................................................................................................................................................................................2031.00300003000000000000
.........................GGGCACACGCAACACAGCGAA.............................................................................................................................................................................................................................2131.00300003000000000000
...........................GCACACGCAACACAGCGAAT............................................................................................................................................................................................................................2031.00300003000000000000
...................CATTGTGGGCACACGCAAC.....................................................................................................................................................................................................................................1931.00300003000000000000
...............TCCGCATTGTGGGCACACGCATT.....................................................................................................................................................................................................................................2331.00300000000000003000
.....................................CACAGCGAATGAGGTACG....................................................................................................................................................................................................................1821.00200002000000000000
..........................................................CAG---TG--CAGCAG----------------------------------------------------------CCACAAAACA.............................................................................................................................2131.00300003000000000000
........................................................AGCAG---TG--CAGCAG----------------------------------------------------------CCACA..................................................................................................................................1831.00300000300000000000
................................CGCAACACAGCGAATGAGGTACGT...................................................................................................................................................................................................................2411.00100001000000000000
.......................................CAGCGAATGAGGTACGTAGC................................................................................................................................................................................................................2011.00100001000000000000
...........................GCACACGCAACACAGCGAA.............................................................................................................................................................................................................................1931.00300003000000000000
............ATATCCGCATTGTGGGCATT...........................................................................................................................................................................................................................................2041.00400000000000004000
.............................ACACGCAACACAGCGAAT............................................................................................................................................................................................................................1831.00300003000000000000
.........................................................GCAG---TG--CAGCAG----------------------------------------------------------CCACAAA................................................................................................................................1931.00300003000000000000
.................CGCATTGTGGGCACACGCA.......................................................................................................................................................................................................................................1931.00300003000000000000
...........TATATCCGCATTGTGGGCA.............................................................................................................................................................................................................................................1931.00300003000000000000
............................CACACGCAACACAGCGAA.............................................................................................................................................................................................................................1831.00300003000000000000
...................CATTGTGGGCACACGCAACACA..................................................................................................................................................................................................................................2231.00300003000000000000
........GTCTATATCCGCATTGTGGG...............................................................................................................................................................................................................................................2031.00300002000000001000
.......................................CAGCGAATGAGGTACGTAGCAG---...........................................................................................................................................................................................................2211.00100001000000000000
.......................GTGGGCACACGCAACACAG.................................................................................................................................................................................................................................1931.00300003000000000000
...................................................TACGTAGCAG---TG--CAGCAG----------------------------------------------------------CCA....................................................................................................................................2111.00100001000000000000
..........................................................CAG---TG--CAGCAG----------------------------------------------------------CCACAAAAC..............................................................................................................................2031.00300003000000000000
..........CTATATCCGCATTGTGGG...............................................................................................................................................................................................................................................1831.00300003000000000000
.............................ACACGCAACACAGCGAATG...........................................................................................................................................................................................................................1931.00300003000000000000
....................................................................CAGCAG----------------------------------------------------------CCACAAAACATGTG---C--G..................................................................................................................2221.00200002000000000000
.........TCTATATCCGCATTGTGGGCTT............................................................................................................................................................................................................................................2231.00300000000000003000
...........................................................................................................................................................................................................CCTTG--CTCTCAGATCTTCCACTGCG.....................................2511.00100001000000000000
.......................................................................CAG----------------------------------------------------------CCACAAAACATGTG---C--GTTAAGC----........................................................................................................2521.00200002000000000000
.....................TTGTGGGCACACGCAACACAGCG...............................................................................................................................................................................................................................2331.00300003000000000000
.......................................................................CAG----------------------------------------------------------CCACAAAACATGTG---C--...................................................................................................................1821.00200002000000000000
........................................................................AG----------------------------------------------------------CCACAAAACATGTG---C--GT.................................................................................................................1921.00200002000000000000
.........TCTATATCCGCATTGTGGGCATC...........................................................................................................................................................................................................................................2330.67200000000000002000
...............TCCGCATTGTGGGCACACGTTT......................................................................................................................................................................................................................................2230.67200000000000002000
.........TCTATATCCGCATTGTGGGCATTA..........................................................................................................................................................................................................................................2430.67200000000000002000
.............TATCCGCATTGTGGGCACAT..........................................................................................................................................................................................................................................2030.67200000000000002000
........GTCTATATCCGCATTGTGGGCA.............................................................................................................................................................................................................................................2230.67200000000000002000
.....GTGGTCTATATCCGCATTGTGG................................................................................................................................................................................................................................................2230.67200002000000000000
................CCGCATTGTGGGCACACGCAAAT....................................................................................................................................................................................................................................2330.67200000000000002000
..................GCATTGTGGGCACACGCAATT....................................................................................................................................................................................................................................2130.67200000000000002000
...CAGTGGTCTATATCCGCAT.....................................................................................................................................................................................................................................................1930.67200002000000000000
....AGTGGTCTATATCCGCATTGTG.................................................................................................................................................................................................................................................2230.67200002000000000000
...........TATATCCGCATTGTGGGCACACGCAACA....................................................................................................................................................................................................................................2830.67200000010000010000
..............ATCCGCATTGTGGGCACACGCAT......................................................................................................................................................................................................................................2330.67200000000000002000
.....GTGGTCTATATCCGCATTG...................................................................................................................................................................................................................................................1930.67200002000000000000
........GTCTATATCCGCATTGTGGGCAT............................................................................................................................................................................................................................................2330.67200000000000002000
...............TCCGCATTGTGGGCACACGCAATTT...................................................................................................................................................................................................................................2540.50200000000000002000
........................TGGGCACACGCAACACAGTA...............................................................................................................................................................................................................................2040.50200000000000002000
.....................................CACAGCGAATGAGGTACGA...................................................................................................................................................................................................................1920.50100000000000001000
....................................................................CAGCAG----------------------------------------------------------CCACAAAACATGTG---C--...................................................................................................................2120.50110000000000000000
............................................................G---TG--CAGCAG----------------------------------------------------------CCACAAAACATG...........................................................................................................................2120.50100000000000001000
...................................AACACAGCGAATGAGGTAC.....................................................................................................................................................................................................................1920.50100000000001000000
.........................GGGCACACGCAACACAGCGAAA............................................................................................................................................................................................................................2230.33100000000000001000
.........TCTATATCCGCATTGTGGGCG.............................................................................................................................................................................................................................................2130.33101000000000000000
..........CTATATCCGCATTGTGGGCT.............................................................................................................................................................................................................................................2030.33101000000000000000
........................TGGGCACACGCAACACAGCGAT.............................................................................................................................................................................................................................2230.33100000000000001000
........GTCTATATCCGCATTGTGGGCT.............................................................................................................................................................................................................................................2230.33101000000000000000
........GTCTATATCCGCATTGTGGGCAC............................................................................................................................................................................................................................................2330.33100000000000001000
................CCGCATTGTGGGCACACGCAACA....................................................................................................................................................................................................................................2330.33100000000000001000
.........TCTATATCCGCATTGTGGGCATTG..........................................................................................................................................................................................................................................2430.33100000000000001000
..........CTATATCCGCATTGTGGGCATT...........................................................................................................................................................................................................................................2230.33100000000000001000
......TGGTCTATATCCGCATTGTGGAA..............................................................................................................................................................................................................................................2330.33100000000000001000
..................GCATTGTGGGCACACGCAACA....................................................................................................................................................................................................................................2130.33100000000000001000
.............TATCCGCATTGTGGGCACACGTTT......................................................................................................................................................................................................................................2430.33100000000000001000
...............TCCGCATTGTGGGCACACGT........................................................................................................................................................................................................................................2030.33100000000000001000
............ATATCCGCATTGTGGGCA.............................................................................................................................................................................................................................................1830.33100000000001000000
............ATATCCGCATTGTGGGCACAA..........................................................................................................................................................................................................................................2130.33100000000000001000
..............ATCCGCATTGTGGGCACACGTTT......................................................................................................................................................................................................................................2330.33100000000000001000
...............TCCGCATTGTGGGCACACGCAAA.....................................................................................................................................................................................................................................2330.33100000000000001000
..........CTATATCCGCATTGTGGGC..............................................................................................................................................................................................................................................1930.33101000000000000000
.............TATCCGCATTGTGGGCACACGTT.......................................................................................................................................................................................................................................2330.33100000000000001000
......TGGTCTATATCCGCATTGTGGC...............................................................................................................................................................................................................................................2230.33100000000000001000
.........TCTATATCCGCATTGTGGGCACA...........................................................................................................................................................................................................................................2330.33100000000000001000
.........TCTATATCCGCATTGTGGGCAAGT..........................................................................................................................................................................................................................................2430.33100000000000001000
........................TGGGCACACGCAACACAGCGAAA............................................................................................................................................................................................................................2330.33100000000000001000
...........TATATCCGCATTGTGGGCACATA.........................................................................................................................................................................................................................................2330.33100000000000001000
.......GGTCTATATCCGCATTGTGGGT..............................................................................................................................................................................................................................................2230.33101000000000000000
...................CATTGTGGGCACACGCAACAA...................................................................................................................................................................................................................................2130.33100000000000001000
.......GGTCTATATCCGCATTGTGGGC..............................................................................................................................................................................................................................................2230.33110000000000000000
.........TCTATATCCGCATTGTGGGCACTA..........................................................................................................................................................................................................................................2430.33100000000000001000
................................................................TG--CAGCAG----------------------------------------------------------CCACAAAACATGTG---T--...................................................................................................................2330.33100000000000001000
........GTCTATATCCGCATTGTGGGCC.............................................................................................................................................................................................................................................2230.33101000000000000000
...........................GCACACGCAACACAGCGAATGT..........................................................................................................................................................................................................................2230.33100000000000001000
GTCCAGTGGTCTATATCCGCAA.....................................................................................................................................................................................................................................................2230.33100000000000001000
.........TCTATATCCGCATTGTGGGATT............................................................................................................................................................................................................................................2240.25100000000000001000
.............TATCCGCATTGTGGGCACATT.........................................................................................................................................................................................................................................2150.20100000000000001000
.............TATCCGCATTGTGGGCATTA..........................................................................................................................................................................................................................................20160.13200000000000002000
...............TCCGCATTGTGGGCAT............................................................................................................................................................................................................................................16130.08100000000000001000
...........TATATCCGCATTGTGGCAT.............................................................................................................................................................................................................................................19200.05100000000000001000
dm3
GTCCAGTGGTCTATATCCGCATTGTGGGCACACGCAACACAGCGAATGAGGTACGTAGCAG---TG--CAGC----------------------------------------------------G-------CCACAAAACATGTC---C--GATAAGC----TAATG--CTC-----------------------------TCCTTG--CTCTTAGATCTTCCACTGCGTCCACCTCGAATGTCCGACCCAGGACAAAAACTACTTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................TCCACCTCGAATGTCCGACCC................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TCTTCCACTGCGTCCACCTCGAA..........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TCCACTGCGTCCACCTCGAAT.........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................ACTGCGTCCACCTCGAAT.........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................GGGCACACGCAACACAGCGAATGA..........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................TAGATCTTCCACTGCGTCCAC................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................TCTTCCACTGCGTCCACCTCGAATGTCC.....................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................AGATCTTCCACTGCGTCCAC................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............ATCCGCATTGTGGGCACACGCAA......................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................GACCCAGGACAAAAACTACT.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............ATCCGCATTGTGGGCACACG.........................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTGTGGGCACACGCAACACAGCGAA.............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TATATCCGCATTGTGGGCACACGCAAC.....................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................ACTGCGTCCACCTCGAATGTC......................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................AATGTCCGACCCAGGACAAAAA......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TCGAATGTCCGACCCAGGACAAAAACT....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........GTCTATATCCGCATTGTGGGCACAC..........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TAATG--CTC-----------------------------TCCTTG--CTCTTA...................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTCCCGTGGTCTTCATCCGCATTGTGGGCACGCGCAACACAGCGAATGAGGTACGTAGCAG---TG--CAGCAG----------------------------------------------------------TCACAAAACAAAAG---A--GATTAGC----TAA----TTG-----------------------------TTCCTG--CTCTCAGATCTTCCACTGCGTCCACCTTGAATGCCCCACCCAGGACAAGAGCTACTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................GATCTTCCACTGCGTCCACCT..............................2112.0020000200
..................................................................................................................................................................................................................................................GCCCCACCCAGGACAAGAGC.....2011.0010001000
.................................................................................................................................................................................................................................................TGCCCCACCCAGGACAAGAG......2011.0011000000
droYak3
GTCCCGTCGTCTTTATCCGCATTGTGGGCACGCGCAACACAGCGAATGAGGTATGTAGCAG---TG--CAGCAGTGGC------AT---------------------------------------------------CACTAAGAG---A--GATTAGC----TAA----CAG-----------------------------TTCTTG--CTTACAGATCTTTCACTGCGTCCACCTCGAATGCCCCACCCAGGACAAGAGCTACCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
GTCCCGTGGTCTTTATACGCATTGTGGGCACTCGTAACACAGCGAATGAGGTAGATATTCAATGAG-----TT--AAATACAATTT--------------------------TT---------CA----------------------TTTC-GA-TAGT----TAATA----A-----------------------------ACTTTT--CCTTTAGATCTTCCATTGCGTGCACCTTGAGTGTCCCACCCAGGACAAGTGCTACTTSizeHit CountTotal NormTotal
No Reads
droBia1
GCCCTGTCGTCTTTATCCGCATTGTGGGCACCCGGAACACAGCCAATGAGGTGAGATTTCG---G------C------------TT-------------------------------------------------CAATTTTTGTGATTTC-GTTACAC----TAAG-----------------------------------TTTTTT--CTTTCAGATCTTCCATTGCGTCCACCTGGAGTGTCCCACCCAGGACAAGGGTTACCTSizeHit CountTotal NormTotal
No Reads
droTak1
GCCCCGTCGTCTTTATCCGCATTGTGGGCACCCGGAATACAGCAAATGAGGTGGGATTCTT---TG--TATC-------------T----------------------------TAACGTTAAC-----------------A-----TTC--GGTTACT----TAGTG----C-----------------------------TCTTTG--CTTTCAGATCTTCCACTGCGTCCATTTGGAGTGTCCCACCCAGGACAAGAGTTACCTSizeHit CountTotal NormTotal
No Reads
droEle1
GTCCCGTGGTTTTCATCCGCATCGTTGGCACCCGCAACACGGCGAATGAGGTGCATAAGAT---CG--TT---------------TTG--CTTT-----------------G--------------TGAGAT--T--------------TC-GT-AAGT----TTATA----ATTTGCCTTGCT------------------TCCTTGCTTTTTTAGATCTTCCATTGCGTCCACCTGGAGTGTCCCACCCAGGACAAGTGCTACCTSizeHit CountTotal NormTotal
No Reads
droRho1
GTCCCGTGGTCTTCATCCGCATCGTGGGCACCCGCAACACGGCGAATGAGGTGAGCAG------TG--CGAC------------TT-GATGTCT-----------------G--------------TGGGAT--T--------------TC-ATTTAGT----TTATG----A-----------------------------TTCTTG--CCTTTAGATCTTTCATTGCGTCCACCTGGAATGTCCCACACAGGACAAGTGCTACTTSizeHit CountTotal NormTotal
No Reads
droFic1
GCCCGGTGGTCTTCATCCGCATCGTGGGCACTCGCAACACGGCGAATGAGGTGGGTATTTG---T------CAG-----------------TCAGTAG--------------AG---------CG----------------------AAACA---AAAC----TAAGG--TTT-----------------------------TGCTTC--ATTTTAGATCTTCCATTGCGTTCACCTTGAATGTCCGACGCAGGACAAGTTCTACCTSizeHit CountTotal NormTotal
No Reads
droKik1
GTCCCGTGGTCTTTATACGCATCGTGGGCACCAGGAACACGGCGAATGAGGTGAGTTTCCTAGAAGTCT---T--A----------------------------------------------------------CGACTTTTTAAG---A--ACTTTAC----TTA----TCT-----------------------------AAACTG--CTTGCAGATCTTTCATTGTGTCCATTTGGAGTGTCCCACGCAGGACAAGGGCTATCTSizeHit CountTotal NormTotal
No Reads
droAna3
GACCCGTCGTCTTTATCCGCATCGTCGGCACCCACAACACTGCGAACGAGGTGAGCCATGG---C------C------------TT----------------------------CGGTAAAGAA-G------TTGCA------------G--GAGGTCCTAAT---------------------------------------TGATCC--ATTTCAGATATTCCACTGCGTCCACCTCGAGTGCCCCACCCAGGACAAAAGCTACCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................................................................................................................................................................................................................................CCACCTCGAGTGCCCCACCCAGGACAAA........2811.001100000
....................ATCGTCGGCACCCACAACACTGC................................................................................................................................................................................................................................2311.001000001
droBip1
GTCCTGTCGTCTTTATCCGCATCGTGGGCACCCGCAACACGGCGAACGAGGTGAGCTATGC---C------C------------AT----------------------------TAATTAAAGG-A------TTGGA------------G--TATTTCCTAAT---------------------------------------CGATCT--ATTTCAGATATTCCACTGTGTCCACCTTGAGTGCCCCACCCAGGACAAGAGCTATCTSizeHit CountTotal NormTotal
No Reads
dp5
GGCCCGTTGTCTTCATACGGATTGTGGGCACCAGGAATACCGCGAATGAGGTAAGCAATTG---C------C-----------------TGTCCGTTGGCTTGGCCGGTGC-CG---------CG----------------------AATCA---AC------TCATG--------------AC----------------TAGTCCCA--AATACAGATATTCCACTGCGTCCATCTCGAGTGCCCGTCGCAGGACAAGAGCTACCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............TACGGATTGTGGGCACCAGGAATAC...................................................................................................................................................................................................................................2511.0010000000010
..............ATACGGATTGTGGGCACCAGGAAT.....................................................................................................................................................................................................................................2411.0010000000001
droPer2
GGCCCGTTGTCTTCATACGGATTGTAGGCACCAGGAATACCGCGAATGAGGTAAGCAATTG---C------C-----------------TGTCCGTTGGCTTGGCCGGTGC-CG---------CG----------------------AATCA---AC------TCATG--------------AC----------------TAGTCCCA--AATACAGATATTCCACTGCGTCCATCTCGAGTGCCCGTCGCAGGACAAGAGCTACCTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................TTCCACTGCGTCCATCTCGA...........................2011.001000010
............................................................................................................................................................................................................................................TCGAGTGCCCGTCGCAGGACAAG........2311.001000001
.............CATACGGATTGTAGGCACCAG.........................................................................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................GATATTCCACTGCGTCCATCT..............................2111.001000001
.............................................................................................................................................................................................................................................CGAGTGCCCGTCGCAGGAC...........1911.001100000
droWil2
GTCCTGTGGTCTTTATACGTATTGTGGGTACACGGAATACGGCCAATGAGGTAAACTGCTT---TC--TG--------------------------------------------------------TAAAAC--CCTAAAAGACAG---G--AACT----AATCGA----CTC-----------------------------TTCATT--TATTTAGATCTTTCACTGCGTGCATTTGGAGTGTCCCAGTCAAGATAAGAGTTATTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................ATTGTGGGTACACGGAATACGGC................................................................................................................................................................................................................................2311.00100100
...........................................................................................................................................................................................................................................TTGGAGTGTCCCAGTCAAG.............1911.00100100
....................ATTGTGGGTACACGGAATACGGCCA..............................................................................................................................................................................................................................2511.00100100
..............................CACGGAATACGGCCAATGA..........................................................................................................................................................................................................................1911.00101000
...................TATTGTGGGTACACGGAATACGGCCA..............................................................................................................................................................................................................................2611.00101000
droVir3
GTCCCATTGTCTTTATACGCATTGTGGGCACACGCAATACGGCAAACGAGGTAGGTCC-----------GAAAG-----------------TCA----------TCAAAGC-TT---------CG----------------------ATACA---ATACTGAT-------------------------------------TAGGCTAT--TCCATAGATATTTCACTGCGTTCATCTGGAGTGCCCCACACAGGACGAGAACTATCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................................................................................................................................................................................GATATTTCACTGCGTTCATCT..............................2112.002000000000000000000000000000000000200000000000000000000000000000
..............................CACGCAATACGGCAAACGA..........................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
GTCCCATTGTCTTTATACGCATTGTG.................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................ATCTGGAGTGCCCCACACAG..............2011.001000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................ATCTGGAGTGCCCCACACA...............1911.001000000000000000000100000000000000000000000000000000000000000000
............TTATACGCATTGTGGGCAC............................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
........................TGGGCACACGCAATACGGCA...............................................................................................................................................................................................................................2011.001000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................ATTTCACTGCGTTCATCTGG............................2011.001000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................GTGCCCCACACAGGACGAGAACTAT..2511.001000000000000000000000000000000000000100000000000000000000000000
GTCCCATTGTCTTTATACGCATT....................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000010000000000000000000000000
droMoj3
GACCCATTGTCTTCATACGAATCGTGGGCACTCGCAATACGGCAAATGAGGCGCGTCCAAAGAAAG-----TT--G----------------------------------------------------------AGAATACTTAAG---G--TATAGAT----TAATGAAT-------------------------------GTATAC--TTCACAGATATTCCATTGTGTGCACCTGGAATGCCCCAGTCAGGACAAGAGCTTTTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........GTCTTCATACGAATCGTGGGCACTCGC........................................................................................................................................................................................................................................2711.001000001
droGri2
GCCCCATTGTCTTCATACGCATTGTGGGCACGCGGAACACGGCAAATGAGGTATGTAGGCA---TA--TA---------------T--GTGTGT-----------------G--------------TGGGATAT-----GCA-------T--ATCC----AAG-------CGG-----------TTCTCAATTCTGTATG--TGTTAC--ATTGCAGATATTTCACTGTGTTCATCTCGAGTGCCCCACGCAGGACAAGAACTACCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:52 PM