ID:

dse_84

 Coordinate:

scaffold_111:62757-62839 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.7 -22.4 -22.4

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DMRT1CLINER1+
mature
  1. dse_83  scaffold_3660:1708-1730 -
  2. scaffold_41:238688-238710 -
  3. dse_84  scaffold_111:62817-62839 -
star
  1. dse_83  scaffold_3660:1669-1693 -
  2. dse_84  scaffold_111:62778-62802 -

Sense Strand Reads

GGATAGCCATCGGCCGCCCGGAGAACAGATCGTAAGGTGATTTCCGTAGCTGCTAGCTTTAGTCAGTGAGTGCACCGAGAAGAAAGCGCCATCTATGCCTGAGGACTCGTGCAGCGCTGCCAGACCTGGGAGCTTTTGCTGCTTACCAGCACTGCTATCCCAGCTGACTGCGTGATCAGCTGG
***********************************(((.......((.(((((.((((((((.((..((((((............))))..))..)).)))))).))...)))))))......))).******************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V113
male body		 V114
embryo
 V115
head
.................................................................................................CGTGAGGACTTGTGGAGCGC.................................................................. 20 3 6 87.33 524 170 302 2 50
.................................................................................................CGTGAGGACTTGTGGAGCGCT................................................................. 21 3 3 69.00 207 89 103 2 13
..................................................................................................GTGAGGACTTGTGGAGCGCT................................................................. 20 3 9 23.00 207 53 141 0 13
..................................................TGCTAGCTTTAGTCAGTGAGTGC.............................................................................................................. 23 0 3 19.67 59 7 0 49 3
..................................................TGCTAGCTTTAGTCAGTGAGTGCA............................................................................................................. 24 0 3 9.00 27 4 0 23 0
...................................................................................................TGAGGACTTGTGGAGCGCT................................................................. 19 2 4 7.50 30 14 14 0 2
....................................................................................................GAGGACTTGTGGAGCGCT................................................................. 18 2 8 6.75 54 40 4 0 10
..................................................TGCTAGCTTTAGTCAGTGAGTGCACC........................................................................................................... 26 0 2 6.00 12 10 0 2 0
...................................................................................................TGAGGACTTGTGGAGCGC.................................................................. 18 2 7 4.86 34 27 1 0 6
..................................................TGCTAGCTTTAGTCAGTGAGTGCAC............................................................................................................ 25 0 2 4.50 9 8 0 0 1
...................................................................................................TGAGGACTTGTGGAGCGCTT................................................................ 20 3 10 3.00 30 11 19 0 0
...TAGCCATCGGCCGCCCGGAGAACAGA.......................................................................................................................................................... 26 0 2 2.50 5 1 0 4 0
.............................................................................................................TGCAGCGCTGCCAGACCTGGGAGCT................................................. 25 0 2 2.00 4 2 0 2 0
.......................................................................................GCCATCTATGCCTGAGGACTCGTGC....................................................................... 25 0 2 2.00 4 1 0 3 0
..............CGCCCGGAGAACAGATCGTAAGGTGAT.............................................................................................................................................. 27 0 2 1.50 3 0 0 3 0
.............................................................................................................TGCAGCGCTGCCAGACCTGGGAGCTTT............................................... 27 0 2 1.50 3 2 0 1 0
..........................................................................................................TCGTGCAGCGCTGCCAGACCTGGGA.................................................... 25 0 2 1.50 3 1 0 2 0
..................................................TGCTAGCTTTAGTCAGTGAGTGCACCGA......................................................................................................... 28 0 2 1.50 3 3 0 0 0
........................................................................................................ACTCGTGCAGCGCTGCCAGACCTGG...................................................... 25 0 2 1.50 3 1 0 2 0
.............................................................................................................TGCAGCGCTGCCAGACCTGGGAGCTT................................................ 26 0 2 1.50 3 2 0 1 0
......................................................................................CGCCATCTATGCCTGAGGACTCGTGC....................................................................... 26 0 2 1.50 3 2 0 1 0
...........................................................................................TCTATGCCTGAGGACTCGTGCAGCGC.................................................................. 26 0 2 1.50 3 1 0 2 0
..................................................TGCTAGCTTTAGTCAGTGAGTGCACCG.......................................................................................................... 27 0 2 1.50 3 1 0 2 0
..........................................................................................................TCGTGCAGCGCTGCCAGACCTGG...................................................... 23 0 2 1.50 3 1 0 2 0
................................................................................................................................................ACCAGCACTGCTATCCCAGCTGACT.............. 25 0 20 1.45 29 29 0 0 0
................................................................................................................................................ACCAGCACTGCTATCCCAGCTGAC............... 24 0 20 1.15 23 23 0 0 0
........................................................................................................ACTCGTGCAGCGCTGCCAGACC......................................................... 22 0 2 1.00 2 1 0 1 0
...TAGCCATCGGCCGCCCGGAGAACAG........................................................................................................................................................... 25 0 2 1.00 2 1 0 1 0
..................................................TGCTAGCTTTAGTCAGTGAG................................................................................................................. 20 0 4 1.00 4 0 0 4 0
..................................................TGCTAGCTTTAGTCAGTGAGTG............................................................................................................... 22 0 3 1.00 3 2 0 1 0
...................................................GCTAGCTTTAGTCAGTGAGTGCACCG.......................................................................................................... 26 0 2 1.00 2 0 0 2 0
...................................................................................................TGAGGACTCGTGCAGCGCTGCCA............................................................. 23 0 2 1.00 2 1 0 1 0
........................................................................................CCATCTATGCCTGAGGACTCGTGCAGC.................................................................... 27 0 2 1.00 2 2 0 0 0
.........................................................................................CATCTATGCCTGAGGACTCGTGCAGC.................................................................... 26 0 2 1.00 2 1 0 1 0
...................................................................................................TGAGGACTCGTGCAGCGCTGCCAGAC.......................................................... 26 0 2 1.00 2 1 0 1 0
.....................................................................................................................TGCCAGACCTGGGAGCTTTTGCTGCA........................................ 26 1 2 1.00 2 0 0 2 0
...................................................................................................CGAGGACTTGTGGAGCGCT................................................................. 19 3 13 0.77 10 10 0 0 0
.......................................................................................GCCAGCTGGGCCTGAGGACT............................................................................ 20 3 10 0.70 7 5 1 0 1
................................................................................................................................................ACCAGCACTGCTATCCCAGCTGA................ 23 0 20 0.70 14 14 0 0 0
..................................................TGCTAGCTTTAGTCAGTGAGTGCAT............................................................................................................ 25 1 3 0.67 2 0 0 2 0
.............................................................................................TATGCCTGAGGACTCGTGCAGCGCTGCC.............................................................. 28 0 2 0.50 1 1 0 0 0
....................GAGAACAGATCGTAAGGTGA............................................................................................................................................... 20 0 2 0.50 1 0 0 1 0
...................................................................................................................GCTGCCAGACCTGGGAGCTTTTGCTGC......................................... 27 0 2 0.50 1 1 0 0 0
.........................................................................................................CTCGTGCAGCGCTGCCAGACCTGGGAGC.................................................. 28 0 2 0.50 1 1 0 0 0
..........................................................................................................TCGTGCAGCGCTGCCAGACCTGGGAT................................................... 26 1 2 0.50 1 0 0 1 0
.......................................................................................GCCATCTGGGACTGAGGACT............................................................................ 20 3 4 0.50 2 1 0 0 1
.............................................................................................................TGCAGCGCTGCCAGACCTTGGAGCTTT............................................... 27 1 2 0.50 1 1 0 0 0
..............CGCCCGGAGAACAGATCGTAAGGTG................................................................................................................................................ 25 0 2 0.50 1 0 0 1 0
.......................................................................................GCCATCTATGCCTGAGGACTCGT......................................................................... 23 0 2 0.50 1 1 0 0 0
.........................................................................................CATCTATGCCTGAGGACTCGTGC....................................................................... 23 0 2 0.50 1 0 0 1 0
..............CGCCCGGAGAACAGATCGTAAGGT................................................................................................................................................. 24 0 2 0.50 1 0 0 1 0
......................................................................................................................GCCAGACCTGGGAGCTTTTGCTGC......................................... 24 0 2 0.50 1 1 0 0 0
.......................................................................................GCCATCTATGCCTGAGGACTCGTGCAGC.................................................................... 28 0 2 0.50 1 1 0 0 0
....................GAGAACAGATCGTAAGGTGATTTCCGT........................................................................................................................................ 27 0 2 0.50 1 0 0 0 1
........................ACAGATCGTAAGGTGATTTCCGTAGC..................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
........................................................................................................ACTCGTGCAGCGCTGCCAGACCTGGGA.................................................... 27 0 2 0.50 1 1 0 0 0
........................................................................................................ACTCGTGCAGCGCTGCCAGACCTGGG..................................................... 26 0 2 0.50 1 0 0 1 0
...........................................................................CGAGAAGAAAGCGCCATCTATGCCTG.................................................................................. 26 0 2 0.50 1 1 0 0 0
..................................................GGCTAGATTTAGTCAGTGAGTGCACC........................................................................................................... 26 2 2 0.50 1 1 0 0 0
.................................................................................................CCTGAGGACTCGTGCAGCGCTGCC.............................................................. 24 0 2 0.50 1 1 0 0 0
......................................................................................CGCCATCTATGCCTGAGGACTCGTG........................................................................ 25 0 2 0.50 1 1 0 0 0
.......................................................................................GCCATCTATGGCTGAGGACTCGTGC....................................................................... 25 1 2 0.50 1 1 0 0 0
..........................................................................................ATCTATGCCTGAGGACTCGTGCAGC.................................................................... 25 0 2 0.50 1 0 0 1 0
.............................................................................................TATGCCTGAGGACTCGTGCAGCG................................................................... 23 0 2 0.50 1 1 0 0 0
...................................................................................................TGAGGACTAGTGGAGCGCT................................................................. 19 2 2 0.50 1 0 1 0 0
........ATCGGCCGCCCGGAGAACAGATA........................................................................................................................................................ 23 1 2 0.50 1 1 0 0 0
.................................................................................................CGTGAGGACTGGTGGAGCGCT................................................................. 21 3 2 0.50 1 0 1 0 0
...........................................................................................................CGTGCAGCGCTGCCAGACCTGGGAGA.................................................. 26 1 2 0.50 1 1 0 0 0
..........................................................................................................TCGTGCAGCGCTGCCAGACCTG....................................................... 22 0 2 0.50 1 1 0 0 0
...........................................................................................TCTATGCCTGAGTACTCGTGCAGCGC.................................................................. 26 1 2 0.50 1 1 0 0 0
............................................................................................CTATGCCTGAGGACTCGTGCAGCGC.................................................................. 25 0 2 0.50 1 0 0 1 0
.....................................................................................................................................TTTTGCTGCTTACCAGCACTGCTATC........................ 26 0 2 0.50 1 1 0 0 0
..................................................TGCTAGCTTTAGTCAGTGAGGGCAC............................................................................................................ 25 1 2 0.50 1 1 0 0 0
.................................................................................................CGTGAGGACTGGTGGAGCGC.................................................................. 20 3 2 0.50 1 1 0 0 0
.............................................................................................................TGCAGCGCTGCCAGACCTGGGAGC.................................................. 24 0 2 0.50 1 1 0 0 0
..................................................TGCTAGCTTTAGTCAGTGATTGCAC............................................................................................................ 25 1 2 0.50 1 1 0 0 0
...........................................................................................................CGTGCAGCGCTGCCCGACCTGGA..................................................... 23 2 2 0.50 1 0 0 1 0
.............................................................................................TATGCCTGAGGACTCGTGCAGCGC.................................................................. 24 0 2 0.50 1 1 0 0 0
...........................................................................................TCTATGCCTGAGGACTCGTGCAG..................................................................... 23 0 2 0.50 1 1 0 0 0
.............................................................................................TATGCCTGAGGACTCGTGCAGCGCT................................................................. 25 0 2 0.50 1 0 0 0 1
.....................................................................................................................TGCCAGACCTGGGAGCTTTTGCTGCT........................................ 26 0 2 0.50 1 0 0 1 0
.....................................................................................GCGCCATCTATGTCTGAGGACTTGTGC....................................................................... 27 2 2 0.50 1 0 0 1 0
....AGCCATCGGCCGCCCGGAGAACAGA.......................................................................................................................................................... 25 0 2 0.50 1 0 0 1 0
.............................................................................................................TGCAGCGCTGCCAGACCTGGG..................................................... 21 0 2 0.50 1 0 0 1 0
..........................................................................................................TCGTGCAGCGCTGCCAGACCTGGGAGC.................................................. 27 0 2 0.50 1 1 0 0 0
..................................................TGCTAGCTTTACTCAGTGAGTACACC........................................................................................................... 26 2 2 0.50 1 1 0 0 0
...........................................................................................TCTATGCCTGAGGACTCGTGC....................................................................... 21 0 2 0.50 1 0 0 1 0
..............................................................................................ATGCCTGAGGACTCGTGCAGCGC.................................................................. 23 0 2 0.50 1 1 0 0 0
..........................................................................................................................................CTGCTTACCAGCACTGCTATCCCAGC................... 26 0 2 0.50 1 1 0 0 0
..........................................................................................................TCGTGCAGCGCTGCCAGACCTGGGAG................................................... 26 0 2 0.50 1 0 0 1 0
..........................................................................................................TCGTGCAGCGCTGCCAGACCTGGGAA................................................... 26 1 2 0.50 1 0 0 1 0
....................GAGAACAGATCGTAAGGTGAT.............................................................................................................................................. 21 0 2 0.50 1 0 0 1 0
...........................................................................................................CGTGCAGCGCTGCCAGACCTGG...................................................... 22 0 2 0.50 1 1 0 0 0
.................................................................................................CGTGAGGACTTGTGCAGCGC.................................................................. 20 2 2 0.50 1 0 1 0 0
.................................................................................................CGTGAGGACTCGTGGAGCGC.................................................................. 20 2 2 0.50 1 0 1 0 0
........................................................................................................ACTCGTGCAGCGCTGCCAGACCTG....................................................... 24 0 2 0.50 1 1 0 0 0
..................................................TGCTAGCTTTAGTCAGTGAGTGCACCGT......................................................................................................... 28 1 2 0.50 1 1 0 0 0
..................................................TGCTAGCTTTAGTCAGTGAGTGT.............................................................................................................. 23 1 3 0.33 1 0 0 1 0
..................................................TGCTAGATTTAGTCAGTGAGTGCA............................................................................................................. 24 1 3 0.33 1 1 0 0 0
..................................................TGCTAGCTTTAGTCAGAGAGTGC.............................................................................................................. 23 1 3 0.33 1 0 0 1 0
..................................................TGCTAGTTTTAGTCAGTGAGTGC.............................................................................................................. 23 1 3 0.33 1 0 0 1 0
......................................................................................................................GCCAGACCTGGGAGCTTTTGCTG.......................................... 23 0 3 0.33 1 1 0 0 0
.....................................................................................................................TGCCAGACCTGGGAGCTTTTGCTC.......................................... 24 1 3 0.33 1 1 0 0 0
........................................TTTACGTAGCTGCTAGCTTTAGTCAG..................................................................................................................... 26 1 3 0.33 1 0 0 0 1
.................................................................................................CGTGAGGACTTGTGAAGCGC.................................................................. 20 3 3 0.33 1 0 1 0 0
....................................................CTAGCTTTAGTCAGTGAGTGC.............................................................................................................. 21 0 3 0.33 1 0 0 1 0
..................................................AGCTAGCTTTAGTCAGTGAGTGC.............................................................................................................. 23 1 3 0.33 1 1 0 0 0
.................................................CTGCTAGCTTTAGTCAGTGAGTG............................................................................................................... 23 0 3 0.33 1 1 0 0 0
...................................................GCTAGCTTTAGTCAGTGAGTGC.............................................................................................................. 22 0 3 0.33 1 0 0 1 0
..................................................TGCTAGCTTTAGTCAGTGAGT................................................................................................................ 21 0 3 0.33 1 1 0 0 0
...............................................AGCTGCTAGCTTTAGTCCGTGAGTG............................................................................................................... 25 1 3 0.33 1 1 0 0 0
.....................................................................................................................TGCCAGACCTGGGAGCTTTTGCT........................................... 23 0 3 0.33 1 1 0 0 0
................................................................................................................................................ACCAGCACTGCTATCCCAGCTGACTGCG........... 28 0 20 0.30 6 6 0 0 0
.................................................................................................CATGAGGACTTGTGGAGCGCT................................................................. 21 3 4 0.25 1 0 1 0 0
..............................................................................................................GCAGCGCTGCCAGACCTGGGAGCTTT............................................... 26 0 4 0.25 1 1 0 0 0
........................................................................................................................................................TGCTATCCCAGCTGACTGCGTGATC...... 25 0 20 0.25 5 3 0 2 0
.................................................................................................CGTGAGGACTTGTGTAGCG................................................................... 19 3 9 0.22 2 1 1 0 0
.......................................................................................GCCAGCTAGGACTGAGGACT............................................................................ 20 3 5 0.20 1 1 0 0 0
..................................................................................................CTGAGGACTTGTGGAGCGCTT................................................................ 21 3 5 0.20 1 1 0 0 0
..................................................TGCTAGCTTTAGTCAGTGAGTGAA............................................................................................................. 24 1 5 0.20 1 0 1 0 0
..................................................................................................GTGAGGACTGGTGGAGCGCT................................................................. 20 3 5 0.20 1 1 0 0 0
..................................................................................................TTGAGGACTTGTGTAGCGCT................................................................. 20 3 5 0.20 1 1 0 0 0
..................................................TGCTAGCTTTAGTCAGAGAGTGA.............................................................................................................. 23 2 5 0.20 1 0 0 1 0
.................................................................................................CTTGAGGACTTGTGGAGCGC.................................................................. 20 3 6 0.17 1 1 0 0 0
....................................................................................................GAGGACTGGTGGAGCGCT................................................................. 18 2 6 0.17 1 0 1 0 0
..................................................................................................GTGAGGACTGGTGGAGCGC.................................................................. 19 3 12 0.17 2 0 1 0 1
..................................................TGCTAGCTTTAGTCAGTG................................................................................................................... 18 0 6 0.17 1 1 0 0 0
................................................................................................................AGCGCTGCCAGACCTGGGAGCTTT............................................... 24 0 20 0.15 3 3 0 0 0
.......................................................................................GCCAGCTAGGACTGAGGAC............................................................................. 19 3 15 0.13 2 0 1 0 1
........................................................................................................ACTTGTGCGGCGCTTCCAGA........................................................... 20 3 8 0.13 1 0 1 0 0
...................................GGTGATTTCCGTAGCTGCTAGCT............................................................................................................................. 23 0 9 0.11 1 1 0 0 0
.......................................................................................GCCAGCTGTGACTGAGGACT............................................................................ 20 3 9 0.11 1 0 1 0 0
................................................................................................................................................ACCAGCACTGCTATCCCAGCTGACTGC............ 27 0 20 0.10 2 2 0 0 0
........................................................................................................................................................TGCTATCCCAGCTGACTGCGTGATCAGC... 28 0 20 0.10 2 2 0 0 0
................................................................................................................................................ACCAGCACTGCTATCCCAGCTGACTG............. 26 0 20 0.10 2 2 0 0 0
.................................................................................................CGTGAGGACTAGTGGAGCG................................................................... 19 3 11 0.09 1 0 1 0 0
........................................................................................CCATCTGGGACTGAGGACT............................................................................ 19 3 14 0.07 1 1 0 0 0
................................................................................................................................................ACCAGCACTGCTATCCCAGCTACT............... 24 3 20 0.05 1 1 0 0 0
..................................................................................................................CGCTGCCAGACCTGGGAGCTTTTGC............................................ 25 0 20 0.05 1 1 0 0 0
...........................................................................................................................................................TATCCCAGCTGACTGCGTGATCAGC... 25 0 20 0.05 1 1 0 0 0
................................................................................................................................................ACCAGCCCTGCTATCCCCGCTGAC............... 24 2 20 0.05 1 1 0 0 0
...........................................................................................................................................................TATCCCAGCTGACTGCGTGATCAG.... 24 0 20 0.05 1 1 0 0 0
...............................................................................................................................................TACCAGCACTGCTATCCCAGCTGAC............... 25 0 20 0.05 1 1 0 0 0
................................................................................................................................................ACCACCACTGCTATCCCAGCTGACTG............. 26 1 20 0.05 1 1 0 0 0
......................................................................................................................................................ACTGCTATCCCAGCTGCCTGCGTGA........ 25 1 20 0.05 1 0 0 1 0
................................................................................................................................................ACCAGCACTGCTATCCCAGCTAACT.............. 25 1 20 0.05 1 1 0 0 0
...............................................................................................................................................CACCAGCACTGCTATCCCAGCTGAC............... 25 1 20 0.05 1 1 0 0 0
....................................................................................................................CTGCCAGACCTGGGAGCTTTTGC............................................ 23 0 20 0.05 1 0 0 1 0
.................................................................................................................................................CCAGCACTGCCATCCCAGCTGACT.............. 24 1 20 0.05 1 1 0 0 0
.......................................................................................GCCAGCTGTGACTGAGGAC............................................................................. 19 3 20 0.05 1 1 0 0 0
................................................................................................................................................ACCAGCACTGCTATCCCCGCTGA................ 23 1 20 0.05 1 1 0 0 0

Anti-sense strand reads

CCTATCGGTAGCCGGCGGGCCTCTTGTCTAGCATTCCACTAAAGGCATCGACGATCGAAATCAGTCACTCACGTGGCTCTTCTTTCGCGGTAGATACGGACTCCTGAGCACGTCGCGACGGTCTGGACCCTCGAAAACGACGAATGGTCGTGACGATAGGGTCGACTGACGCACTAGTCGACC
********************************************************(((.......((.(((((.((((((((.((..((((((............))))..))..)).)))))).))...)))))))......))).*********************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V114
embryo
 V115
head
 V113
male body
...................................CCACTAAAGGCATCGACGATCGAAA........................................................................................................................... 25 0 9 23.56 212 193 10 6 3
.........AGCCGGCGGGCCTCTTGTCTAGCAT..................................................................................................................................................... 25 0 2 5.00 10 6 3 1 0
.....CGGTAGCCGGCGGGCCTCTTGTCT.......................................................................................................................................................... 24 0 2 4.00 8 5 2 0 1
....................................CACTAAAGGCATCGACGATCGAAA........................................................................................................................... 24 0 9 3.67 33 29 3 1 0
..................................TCCACTAAAGGCATCGACGATCGAAA........................................................................................................................... 26 0 7 2.29 16 8 6 1 1
.........AGCCGGCGGGCCTCTTGTCTAGCATT.................................................................................................................................................... 26 0 2 2.00 4 2 2 0 0
.................................TTCCACTAAAGGCATCGACGATCGAAA........................................................................................................................... 27 0 2 1.50 3 3 0 0 0
.....................................ACTAAAGGCATCGACGATCGAAA........................................................................................................................... 23 0 9 1.11 10 9 1 0 0
...................................CCACTAAAGGCATCGACGATCGAAAT.......................................................................................................................... 26 0 2 1.00 2 2 0 0 0
................................................................................................CGGACTCCTGAGCACGTCGCGACGGT............................................................. 26 0 2 1.00 2 1 0 1 0
......................................................................................................................................AAACGACGAATGGTCGTGACGATAGGGT..................... 28 0 2 1.00 2 0 2 0 0
........TAGCCGGCGGGCCTCTTGTCT.......................................................................................................................................................... 21 0 2 1.00 2 2 0 0 0
.................................................................................................GGACTCCTGAGCACGTCGCGACGGT............................................................. 25 0 2 1.00 2 0 2 0 0
..TATCGGTAGCCGGCGGGCCTCTTGT............................................................................................................................................................ 25 0 2 1.00 2 2 0 0 0
........................................................................................................TGAGCACGTCGCGACGGTCTGGACCCT.................................................... 27 0 2 1.00 2 1 1 0 0
..........GCCGGCGGGCCTCTTGTCTAGCATT.................................................................................................................................................... 25 0 2 1.00 2 1 1 0 0
..........GCCGGCGGGCCTCTTGTCTAGCAT..................................................................................................................................................... 24 0 2 1.00 2 1 1 0 0
............................................................................................................................................CGAATGGTCGTGACGATAGGGTCGACT................ 27 0 2 1.00 2 2 0 0 0
......GGTAGCCGGCGGGCCTCTTGTCTAG........................................................................................................................................................ 25 0 2 0.50 1 1 0 0 0
.................................TTTTACTAAAGGCATCGACGATCGAAA........................................................................................................................... 27 2 2 0.50 1 0 1 0 0
......GGTAGCCGGCGTGCCTCTTGTCT.......................................................................................................................................................... 23 1 2 0.50 1 1 0 0 0
...........................CTAGCATTCCACTAAAGGCATCGACG.................................................................................................................................. 26 0 2 0.50 1 1 0 0 0
......................................................................................................CCTGAGCACGTCGCGTCGGTCTGGACC...................................................... 27 1 2 0.50 1 1 0 0 0
..........................................................................GGCTCTTCTTTCGCGGTAGA......................................................................................... 20 0 2 0.50 1 0 1 0 0
...................................................................................................................................CGAAAACGACGAATGGTCGTGAC............................. 23 0 2 0.50 1 1 0 0 0
.......GTAGCCGGCGGGCCTCTTGTCTAGC....................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0
.....CGGTAGCCGGCGGGCCTCTTGTC........................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0
.CTATCCGTAGCCGGCGGGCCTCTTGT............................................................................................................................................................ 26 1 2 0.50 1 1 0 0 0
.................................................................................................................................CTCGAAAACGACGAATGGTCGTGAC............................. 25 0 2 0.50 1 1 0 0 0
.CTATCGGTAGCCGGCGGGCCTCTTGT............................................................................................................................................................ 26 0 2 0.50 1 1 0 0 0
.......GTAGCCGGCGGGCCTCTTGTCTAG........................................................................................................................................................ 24 0 2 0.50 1 0 1 0 0
........................................................................................................................................ACGACGAATGGTCGTGACGATAGGGT..................... 26 0 2 0.50 1 0 1 0 0
..........CCCGGCGGGCCTCTTGTCTAGCATT.................................................................................................................................................... 25 1 2 0.50 1 0 1 0 0
...ATCGGTAGCCGGCGGGCCTCTTGT............................................................................................................................................................ 24 0 2 0.50 1 1 0 0 0
......................................................................................................CCTGAGCACGTCGCGACGGTCTGGACC...................................................... 27 0 2 0.50 1 1 0 0 0
..TATCCGTAGCCGGCGGGCCTCTTGT............................................................................................................................................................ 25 1 2 0.50 1 1 0 0 0
..........................................................................................................AGCACGTCGCGACGGTCTGGACC...................................................... 23 0 2 0.50 1 1 0 0 0
......GGTAGCCGGCGGGCCTCTTGTCTAGCAT..................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0
..........................................................................................................................................GACGAATGGTCGTGACGATCGGGT..................... 24 1 2 0.50 1 1 0 0 0
........TAGCCGGCGGGCCTCTTGTCTAGCAT..................................................................................................................................................... 26 0 2 0.50 1 0 1 0 0
................................................................................................................................TCTCGAAAACGACGAATGGTCGTGAC............................. 26 1 2 0.50 1 1 0 0 0
CCTATCGGTAGCCGGCGGGCCTCT............................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
.............................................................................................................ACGTCGCGACGGTCTGGACC...................................................... 20 0 2 0.50 1 0 1 0 0
..................................................ACGATCGAAATCAGTCACTCACGTGG........................................................................................................... 26 0 2 0.50 1 1 0 0 0
......GGTAGCCGGCGGGCCTCTTGTC........................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0
.................................TTCCACTAAAGGCATCGACGCTCGAAA........................................................................................................................... 27 1 2 0.50 1 1 0 0 0
................................................................................TCTTTCGCGGTAGATACGGACTCCTG............................................................................. 26 0 2 0.50 1 1 0 0 0
........................................................................................................TGAGCACGTCGCGACGGTCT........................................................... 20 0 2 0.50 1 1 0 0 0
.........................................................................TGGCTCTTCTTTCGCGGTAGATACG..................................................................................... 25 0 2 0.50 1 1 0 0 0
...........CCGGCGAGCCTCTTGTCTAGCAT..................................................................................................................................................... 23 1 2 0.50 1 1 0 0 0
..........................................................................................TAGATACGGACTCCTGAGCACGTCGC................................................................... 26 0 2 0.50 1 1 0 0 0
......GGTAGCCGGCGGGCCTCTTGTCT.......................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0
............................................................TCAGTCACTCACGTGGCTCTTCTT................................................................................................... 24 0 2 0.50 1 1 0 0 0
........................................................................................................TGAGCACGTCGCGACGGTCTGGACC...................................................... 25 0 2 0.50 1 1 0 0 0
.........................................................................................................GAGCACGTCGCGACGGTCTGGAC....................................................... 23 0 2 0.50 1 1 0 0 0
............................................................TCAGTCACTCACGTGGCTCTTCTTTCGCG.............................................................................................. 29 0 2 0.50 1 1 0 0 0
.........TGCCGGCGGGCCTCTTGTCT.......................................................................................................................................................... 20 1 2 0.50 1 1 0 0 0
..TATCGGTAGCCGGCGGGCCTCTTGTCT.......................................................................................................................................................... 27 0 2 0.50 1 1 0 0 0
...................................................................................................................................CGAAAACGACGAATGGTCGTGA.............................. 22 0 2 0.50 1 1 0 0 0
...................................CCACTAAAGGCATCGACGATCGAA............................................................................................................................ 24 0 9 0.44 4 3 1 0 0
......................................CTAAAGGCATCGACGATCGAAA........................................................................................................................... 22 0 9 0.33 3 1 2 0 0
................................TTTCCACTGAAGGCATCGACGATCGAAA........................................................................................................................... 28 2 3 0.33 1 1 0 0 0
..............................................................................................................CGTCGCGACGGTCTGGACCCT.................................................... 21 0 4 0.25 1 1 0 0 0
........................................AAAGGCATCGACGATCGAAA........................................................................................................................... 20 0 10 0.20 2 0 2 0 0
...........................................GGCATCGACGATCGAAATCAG....................................................................................................................... 21 0 5 0.20 1 1 0 0 0
...................................TCACTAAAGGCATCGACGATCGAAA........................................................................................................................... 25 1 10 0.20 2 1 1 0 0
.......................................................................................................................................................GACGATAGGGTCGACTGACGCACTAGT..... 27 0 20 0.15 3 2 1 0 0
..................................TCCACTAAAGGCATCGACGATCGA............................................................................................................................. 24 0 7 0.14 1 1 0 0 0
..................................TCCACTAAAGGCATCGACGATCTAA............................................................................................................................ 25 1 7 0.14 1 1 0 0 0
..................................TCCACTAAAGGCATCCACGATCGAAA........................................................................................................................... 26 1 7 0.14 1 1 0 0 0
..................................TCCACTAAAGGCATCGACGAGCGAAA........................................................................................................................... 26 1 7 0.14 1 1 0 0 0
.....................................ACTAAAGGCATCGACGGGCGAAA........................................................................................................................... 23 2 9 0.11 1 1 0 0 0
...................................CCACTAAAGGCATCGACCATCGAAA........................................................................................................................... 25 1 9 0.11 1 0 1 0 0
...................................CCACTAAAGGCATCGACGATCGA............................................................................................................................. 23 0 9 0.11 1 1 0 0 0
...................................CCACTAAAGTCATCGACGATCGAA............................................................................................................................ 24 1 9 0.11 1 1 0 0 0
...................................CCACTAAAGGCATCGACGCTCGAAA........................................................................................................................... 25 1 9 0.11 1 1 0 0 0
....................................CACTAAAGGCATCGACGATC............................................................................................................................... 20 0 9 0.11 1 1 0 0 0
...................................CCACTAAAGGCATCGAAGATCGAAA........................................................................................................................... 25 1 9 0.11 1 1 0 0 0
...................................CCACTAAAGGCATCGACGA................................................................................................................................. 19 0 9 0.11 1 1 0 0 0
.....................................ACTAACTGCATCGACGCTCGAAA........................................................................................................................... 23 3 9 0.11 1 1 0 0 0
...................................CCACTAAAGGCATCGACGATCGAAT........................................................................................................................... 25 1 9 0.11 1 1 0 0 0
...................................CCACGAAAGGCATCGACGATCGAAA........................................................................................................................... 25 1 9 0.11 1 1 0 0 0
...................................CCACTAAAGGCATCGACGATC............................................................................................................................... 21 0 9 0.11 1 1 0 0 0
....................................CACTAAAAGCATCGACGATCGAAA........................................................................................................................... 24 1 10 0.10 1 1 0 0 0
....................................................................................................................................................CGTGACGATAGGGTCGACTGACGCACT........ 27 0 20 0.10 2 1 0 1 0
.......................................AAAAGGCATCGACGATCGAAA........................................................................................................................... 21 1 10 0.10 1 0 1 0 0
.......................................................................................................................................................GACGATAGGGTCGACTGACGCACT........ 24 0 20 0.10 2 1 0 1 0
...........................................................................................................................................................ATAGGGTCGACTGACGCACTAGT..... 23 0 20 0.10 2 2 0 0 0
...................................CCACTAAAGGCGTCGACGATCGAAA........................................................................................................................... 25 1 10 0.10 1 1 0 0 0
..........................TCTTGCACTCCACTATAGGC......................................................................................................................................... 20 3 12 0.08 1 1 0 0 0
.....................................................................................CGCGGTAGCTCCGGCCTCC............................................................................... 19 3 15 0.07 1 1 0 0 0
..................................AACACTAAAGGCATCGACGATCGAAA........................................................................................................................... 26 2 17 0.06 1 1 0 0 0
.......................................................................................................................................................GACGATAGGGTCGACTGACGC........... 21 0 20 0.05 1 0 1 0 0
......................................................................................................................................................TGACGATAGGGTCGACTGACGCA.......... 23 0 20 0.05 1 0 1 0 0
......................................................................................................................................................TGACGATAGGGTCGACTGACGCACT........ 25 0 20 0.05 1 1 0 0 0
..........................................................................................................................................................GATAGGGTCGACTGACGCACTAGT..... 24 0 20 0.05 1 0 1 0 0
.................................................................................................................................................GGTCGTGACGATAGGGTCGAC................. 21 0 20 0.05 1 0 1 0 0
......................................................................................................................................................TGACGATAGGGTCGACTGACGCACTAGT..... 28 0 20 0.05 1 1 0 0 0
..........................................................................................................................................CGCGAATGGTCGTGACGTTA......................... 20 3 20 0.05 1 0 0 0 1
.............................................................................................................................................................AGGGTCGACTGACGCACTAGT..... 21 0 20 0.05 1 0 1 0 0
..........................................................................................................................................................GATAGGGTCGACTGACGCACT........ 21 0 20 0.05 1 1 0 0 0
.....................................................................................................................................................GTGACGATAGGGTCGACTGACGCACT........ 26 0 20 0.05 1 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_111:62707-62889 - dse_84 GGATAGCCATCGGCCGCC--------------------CGGAGAACAGATCGTAAGGTGATTTCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCACCGAGAAG-------------------------------------AAAGCGCCATCTATGCCTGAGGACTCGT--------GCAGCGCTGCCAGACCTG-GGA-GCTTTTGCTGCTTACCAGCACTGCTATCCCAGCTGACTGCGTGATCAGCTGG
droSim2 2r:2016563-2016745 - GGATAGCCATCGGCCGCC--------------------CGGAGAACAGATCGTTAGGTGATTTCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCACCGAGAAG-------------------------------------AAAGCGCCATCTATGCCTGAGGACTCGT--------GCAGCGCTGCCAGACCTG-GGA-GCTTTTGCTGTTTACCAGCACTGCTATCCCAGCTGACTGCGTGATCAGCTGG
dm3 chrU:2553975-2554182 + GGATAACCGTTGACCGCCCATTTATGTATGCTACGCC-CGGTGGACAGATCGTTAGGTGATTTCCGTAGCTGCTAGCTTTTGTC-AGT--------------------------------------------GATTGCACTGAGAGG-------------------------------------AAAGCGCCACCTATGCCAGAGGACTCGTGCAGCCGACCAGCGCT-CTGGATCT--GGA-GCTTTTGCCGTTTGCCAGCACTGCTATCCAAGCTGACTGCGTGATCAGCTGG
droEre2 scaffold_4784:23541806-23541983 - GGAAAGT--------------------ATGCCACAAC-AGGTGACTCGATCGTTTGTCGATTCACGTAGCAGATAGCGTTTGAC-AGCAGACG------------------------------------------AGTGCCG---AT-------------------------------------ACAGCGCCATCTGTGCTTGGGCGCACCTGCGGTT--------AAACAAGA--T--GGG-GCTTTGGCCGCATACCAACACTACTTTCACAGCTGTCTGCGGAATCAGCACG
droYak3 3L:23658970-23659176 + GGATTGTCGTCAGCAGCCCAGGAAAGTATGCTACGTT-TAGAGACGAGATCGTTTGGCTAGTTATGTAGCAATTTGCTTCTGATCAGT-AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTGTGGTTGGGGTCGCCTTCGGCTGTGCAGCGCTGCCAGACCG--GTA-GCCTGAGCCGTTTTCCAACACTGGTTTAGCAGCTGAGAGTGAGATCAGCTGG
droTak1 scf7180000414753:4984-5170 + GGATTGGCAGCAGCAGCCCAGGAATGTTTGCTAC-------------GATCTTGAAGTGAAACCCGTAGCAGGTACCTTTTGTC-AGT--------------------------------------------GAGCGC--------AACAGCGCTCCCA------GGCGGTCAGGT----------------------GCC--ACAAGTTAT--------ACAGCGTGGCCAGATCAGT-GC-CGTCCTTGCGTTT-ACAACACTGGTTTT-CAGCTGTTTAAGAGATCAGCTGG
droEle1 scf7180000490567:6893-7099 + GGAAA----------GACCGGGAATGTATGCTACGACCCGCTGTTTTGATCGTTTGTCGATTTTCGTAGCGGTTAGCTTTTGTA-AGCATGCG------------------------------------------AGCAC------GGAAGCGCCCCCACAAGTCGGGGGCCAGTCGCTGCCATAT----------------------------AGCGGCGACGTGCTGCCAGACCGGT-GCAATTTCACCCGTTTTCCAACACTGGTTTCGCATCTAATTGCGTGATCAACTGG
droKik1 scf7180000301672:3102-3306 + GGACTTCGGGCAGCAGCCCGGGAATTTCCGCA-------------GCGATCGTTAGCTGAAGCTTGTAGCAAGCAGCTTCTGTC-ACGTGTCAGGGTTTTTACCCCGTAGGTGGCGCTAATGTTCACATGTAGAGTGC--------AGC-----------------------------------------------------------------GGCGCTGCAGTGCTGCCACACAGCT-GC-ATTGCGCTCGCTTCACTACACTGCA-CGCCAGCTGATCGAGCAATCAGCTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GGATAGCCATCGGCCGCC--------------------CGGAGAACAGATCGTAAGGTGATTTCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCACCGAGAAG-------------------------------------AAAGCGCCATCTATGCCTGAGGACTCGT--------GCAGCGCTGCCAGACCTG-GGA-GCTTTTGCTGCTTACCAGCACTGCTATCCCAGCTGACTGCGTGATCAGCTGGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGC.............................................................................................................................................................23319.675970493
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCA............................................................................................................................................................2439.002740230
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCACC..........................................................................................................................................................2626.001210020
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCAC...........................................................................................................................................................2524.5098001
...TAGCCATCGGCCGCC--------------------CGGAGAACAGA......................................................................................................................................................................................................................................................2622.5051040
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GGA-GCT.................................................2522.0042020
.............................................................................................................................................................................................GCCATCTATGCCTGAGGACTCGT--------GC.........................................................................2522.0041030
..............CGCC--------------------CGGAGAACAGATCGTAAGGTGAT..........................................................................................................................................................................................................................................2721.5030030
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GGA-GCTTT...............................................2721.5032010
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-GGA-....................................................2521.5031020
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCACCGA........................................................................................................................................................2821.5033000
..............................................................................................................................................................................................................ACTCGT--------GCAGCGCTGCCAGACCTG-G.......................................................2521.5031020
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GGA-GCTT................................................2621.5032010
............................................................................................................................................................................................CGCCATCTATGCCTGAGGACTCGT--------GC.........................................................................2621.5032010
.................................................................................................................................................................................................TCTATGCCTGAGGACTCGT--------GCAGCGC....................................................................2621.5031020
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCACCG.........................................................................................................................................................2721.5031020
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-G.......................................................2321.5031020
................................................................................................................................................................................................................................................................ACCAGCACTGCTATCCCAGCTGACT..............25201.452929000
................................................................................................................................................................................................................................................................ACCAGCACTGCTATCCCAGCTGAC...............24201.152323000
..............................................................................................................................................................................................................ACTCGT--------GCAGCGCTGCCAGACC...........................................................2221.0021010
...TAGCCATCGGCCGCC--------------------CGGAGAACAG.......................................................................................................................................................................................................................................................2521.0021010
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAG................................................................................................................................................................2041.0040040
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTG..............................................................................................................................................................2231.0032010
.......................................................................GCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCACCG.........................................................................................................................................................2621.0020020
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCA...............................................................2321.0021010
..............................................................................................................................................................................................CCATCTATGCCTGAGGACTCGT--------GCAGC......................................................................2721.0022000
...............................................................................................................................................................................................CATCTATGCCTGAGGACTCGT--------GCAGC......................................................................2621.0021010
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAGAC............................................................2621.0021010
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTTTTGCTGCA........................................2621.0020020
................................................................................................................................................................................................................................................................ACCAGCACTGCTATCCCAGCTGA................23200.701414000
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCAT...........................................................................................................................................................2530.6720020
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCGCTGCC................................................................2820.5011000
........................................GAGAACAGATCGTAAGGTGA...........................................................................................................................................................................................................................................2020.5010010
.................................................................................................................................................................................................................................GCTGCCAGACCTG-GGA-GCTTTTGCTGC.........................................2720.5011000
...............................................................................................................................................................................................................CTCGT--------GCAGCGCTGCCAGACCTG-GGA-GC..................................................2820.5011000
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-GGA-T...................................................2620.5010010
..............CGCC--------------------CGGAGAACAGATCGTAAGGTG............................................................................................................................................................................................................................................2520.5010010
.............................................................................................................................................................................................GCCATCTATGCCTGAGGACTCGT--------...........................................................................2320.5011000
...............................................................................................................................................................................................CATCTATGCCTGAGGACTCGT--------GC.........................................................................2320.5010010
..............CGCC--------------------CGGAGAACAGATCGTAAGGT.............................................................................................................................................................................................................................................2420.5010010
....................................................................................................................................................................................................................................GCCAGACCTG-GGA-GCTTTTGCTGC.........................................2420.5011000
.............................................................................................................................................................................................GCCATCTATGCCTGAGGACTCGT--------GCAGC......................................................................2820.5011000
........................................GAGAACAGATCGTAAGGTGATTTCCGT....................................................................................................................................................................................................................................2720.5010001
............................................ACAGATCGTAAGGTGATTTCCGTAGC.................................................................................................................................................................................................................................2620.5011000
..............................................................................................................................................................................................................ACTCGT--------GCAGCGCTGCCAGACCTG-GGA-....................................................2720.5011000
..............................................................................................................................................................................................................ACTCGT--------GCAGCGCTGCCAGACCTG-GG......................................................2620.5010010
............................................................................................................................................CGAGAAG-------------------------------------AAAGCGCCATCTATGCCTG............................................................................................2620.5011000
.......................................................................................................................................................................................................CCTGAGGACTCGT--------GCAGCGCTGCC................................................................2420.5011000
............................................................................................................................................................................................CGCCATCTATGCCTGAGGACTCGT--------G..........................................................................2520.5011000
................................................................................................................................................................................................ATCTATGCCTGAGGACTCGT--------GCAGC......................................................................2520.5010010
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCG.....................................................................2320.5011000
........ATCGGCCGCC--------------------CGGAGAACAGATA....................................................................................................................................................................................................................................................2320.5011000
.................................................................................................................................................................................................................CGT--------GCAGCGCTGCCAGACCTG-GGA-GA..................................................2620.5011000
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-........................................................2220.5011000
..................................................................................................................................................................................................CTATGCCTGAGGACTCGT--------GCAGCGC....................................................................2520.5010010
.....................................................................................................................................................................................................................................................TTTTGCTGCTTACCAGCACTGCTATC........................2620.5011000
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GGA-GC..................................................2420.5011000
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCGC....................................................................2420.5011000
.................................................................................................................................................................................................TCTATGCCTGAGGACTCGT--------GCAG.......................................................................2320.5011000
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCGCT...................................................................2520.5010001
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTTTTGCTGCT........................................2620.5010010
....AGCCATCGGCCGCC--------------------CGGAGAACAGA......................................................................................................................................................................................................................................................2520.5010010
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GG......................................................2120.5010010
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-GGA-GC..................................................2720.5011000
.................................................................................................................................................................................................TCTATGCCTGAGGACTCGT--------GC.........................................................................2120.5010010
....................................................................................................................................................................................................ATGCCTGAGGACTCGT--------GCAGCGC....................................................................2320.5011000
..........................................................................................................................................................................................................................................................CTGCTTACCAGCACTGCTATCCCAGC...................2620.5011000
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-GGA-G...................................................2620.5010010
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-GGA-A...................................................2620.5010010
........................................GAGAACAGATCGTAAGGTGAT..........................................................................................................................................................................................................................................2120.5010010
.................................................................................................................................................................................................................CGT--------GCAGCGCTGCCAGACCTG-G.......................................................2220.5011000
..............................................................................................................................................................................................................ACTCGT--------GCAGCGCTGCCAGACCTG-........................................................2420.5011000
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCACCGT........................................................................................................................................................2820.5011000
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGT.............................................................................................................................................................2330.3310010
....................................................................................................................................................................................................................................GCCAGACCTG-GGA-GCTTTTGCTG..........................................2330.3311000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTTTTGCTC..........................................2430.3311000
........................................................................CTAGCTTTAGTC-AGT--------------------------------------------GAGTGC.............................................................................................................................................................2130.3310010
.....................................................................CTGCTAGCTTTAGTC-AGT--------------------------------------------GAGTG..............................................................................................................................................................2330.3311000
.......................................................................GCTAGCTTTAGTC-AGT--------------------------------------------GAGTGC.............................................................................................................................................................2230.3310010
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGT...............................................................................................................................................................2130.3311000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTTTTGCT...........................................2330.3311000
................................................................................................................................................................................................................................................................ACCAGCACTGCTATCCCAGCTGACTGCG...........28200.3066000
............................................................................................................................................................................................................................GCAGCGCTGCCAGACCTG-GGA-GCTTT...............................................2640.2511000
........................................................................................................................................................................................................................................................................TGCTATCCCAGCTGACTGCGTGATC......25200.2553020
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------G..................................................................................................................................................................1860.1711000
..............................................................................................................................................................................................................................AGCGCTGCCAGACCTG-GGA-GCTTT...............................................24200.1533000
.......................................................GGTGATTTCCGTAGCTGCTAGCT.........................................................................................................................................................................................................................2390.1111000
................................................................................................................................................................................................................................................................ACCAGCACTGCTATCCCAGCTGACTGC............27200.1022000
........................................................................................................................................................................................................................................................................TGCTATCCCAGCTGACTGCGTGATCAGC...28200.1022000
................................................................................................................................................................................................................................................................ACCAGCACTGCTATCCCAGCTGACTG.............26200.1022000
................................................................................................................................................................................................................................................................ACCAGCACTGCTATCCCAGCTACT...............24200.0511000
................................................................................................................................................................................................................................CGCTGCCAGACCTG-GGA-GCTTTTGC............................................25200.0511000
...........................................................................................................................................................................................................................................................................TATCCCAGCTGACTGCGTGATCAGC...25200.0511000
...........................................................................................................................................................................................................................................................................TATCCCAGCTGACTGCGTGATCAG....24200.0511000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCCAGCTGAC...............25200.0511000
..................................................................................................................................................................................................................................CTGCCAGACCTG-GGA-GCTTTTGC............................................23200.0510010
droSim2
GGATAGCCATCGGCCGCC--------------------CGGAGAACAGATCGTTAGGTGATTTCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCACCGAGAAG-------------------------------------AAAGCGCCATCTATGCCTGAGGACTCGT--------GCAGCGCTGCCAGACCTG-GGA-GCTTTTGCTGTTTACCAGCACTGCTATCCCAGCTGACTGCGTGATCAGCTGGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................TTTCCGTAGCTGCTAGCTTTAGTC-AG................................................................................................................................................................................................................262139.00278001140329408513028200000
............................................................TTTCCGTAGCTGCTAGCTTTAGTC-..................................................................................................................................................................................................................242102.50205001011602334294347110000
................................................................................................................................................AAG-------------------------------------AAAGCGCCATCTATGCCTGAGGA........................................................................................26196.00960000000771180000000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTTAGG..............................................................................................................................................................................................................................................28184.008400000032331120051000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAG..............................................................24160.0060001100384650302000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAGA.............................................................25153.0053002000181350303000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCTGCC................................................................26152.005200210011015130190000
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-GGA-....................................................25152.005200000011171644000000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCTGC.................................................................25149.0049000000247690210000
..............CGCC--------------------CGGAGAACAGATCGTTAGGTG............................................................................................................................................................................................................................................25445.2518100300023114701456000
............................................................................................................................................................................................................................................TG-GGA-GCTTTTGCTGTTTACCAGCAC...............................26142.0042000000000041100000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCCAGCTGAC...............25839.253140009744222717125630000
............................................................TTTCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------...................................................................................................................................................................27238.5077000100122971711000000
.................................................................................................................................................................................................TCTATGCCTGAGGACTCGT--------GCAGCGC....................................................................26137.0037001000102131010000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAGACC...........................................................27136.0036013000711215060000
................................................................................................................................................AAG-------------------------------------AAAGCGCCATCTATGCCTGAGG.........................................................................................25134.00340000000230110000000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAGAC............................................................26132.0032000000011040260000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCCAGC...................211230.25363001128042020131500000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCCA.....................191329.77387000033045000012000000
............................................................TTTCCGTAGCTGCTAGCTTTAGTC-A.................................................................................................................................................................................................................25225.50510062303139113010000
......................................................................................................................................................................................................GCCTGAGGACTCGT--------GCAGCGCTGC.................................................................24124.0024000000020270130000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCCAGCTGA................24823.881910011233002354175100000
......................................................................................................................................................................................................GCCTGAGGACTCGT--------GCAGCGCTGCC................................................................25122.0022001000000112080000
............................................................TTTCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------G..................................................................................................................................................................28219.5039002000815680000000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCCAGCT..................221218.922270010126420111145000000
..........CGGCCGCC--------------------CGGAGAACAGATCGTTAGG..............................................................................................................................................................................................................................................27118.001800000037210050000
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCGCTGC.................................................................27118.0018000000031210020000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCTGCCA...............................................................27117.0017000000121200110000
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCGCT...................................................................25116.001600100001047030000
...........GGCCGCC--------------------CGGAGAACAGATCGTTAGG..............................................................................................................................................................................................................................................26115.001500000056310000000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTTAG...............................................................................................................................................................................................................................................27114.001400000017200031000
............................................................TTTCCGTAGCTGCTAGCTTTAGT....................................................................................................................................................................................................................23213.502700030013668000000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTTTTGCTGTT........................................26113.001300000005214010000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAGAA............................................................26113.001300000002000092000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCTG..................................................................24112.001200000011012070000
................................................................................................................................................AAG-------------------------------------AAAGCGCCATCTATGCCTGAGGACT......................................................................................28112.001200000008040000000
......................................CGGAGAACAGATCGTTAGGTG............................................................................................................................................................................................................................................21412.00480021001111440240000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCTGCA................................................................26112.0012000000000000120000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTTTTG.............................................21711.147800040051221441000000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCA...............................................................23111.001100100001012060000
............................................................TTTCCGTAGCTGCTAGC..........................................................................................................................................................................................................................17411.0044000000000044000000
...TAGCCATCGGCCGCC--------------------CGGAGAACAGA......................................................................................................................................................................................................................................................26111.001100000005410100000
................................................................................................................................................AAG-------------------------------------AAAGCGCCATCTATGCCTGAGGAC.......................................................................................27111.001100000008120000000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTTA................................................................................................................................................................................................................................................26111.001100000003050030000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCCAG....................201310.621380000135000003000000
......................................CGGAGAACAGATCGTTAGGTGAA..........................................................................................................................................................................................................................................23410.00400000001191410140000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCTGCCAG..............................................................28110.001000000025010011000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTTTTGCTGT.........................................25110.001000000012124000000
.................C--------------------CGGAGAACAGATCGTTAGGTG............................................................................................................................................................................................................................................2249.25370070000102130140000
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCGC....................................................................2419.00900100000107000000
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-GGA-G...................................................2619.00900020000213100000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCTGCCAGA.............................................................2919.00900000026000010000
........................................................................................................................................................................................................................................................................TGCTATCCCAGCTGACTGCGTGATC......2548.753500000074458061000
..............CGCC--------------------CGGAGAACAGATCGTTAGG..............................................................................................................................................................................................................................................2348.50340000001105420111000
...............GCC--------------------CGGAGAACAGATCGTTAGGTG............................................................................................................................................................................................................................................2447.7531000000100010290000
......................................................................................................................................................................................................................................................................ACTGCTATCCCAGCTGACTGCGTGA........2547.753100000085882000000
..............CGCC--------------------CGGAGAACAGATCGTTAGGT.............................................................................................................................................................................................................................................2447.5030000000120021213000
............................................................TTTCCGTAGCTGCTAGCTTTAG.....................................................................................................................................................................................................................2227.501500006002007000000
......................................CGGAGAACAGATCGTTAGGTGATTTC.......................................................................................................................................................................................................................................2637.3322000000035140000000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTTTTGC............................................2277.2951001000286430000000
......................................CGGAGAACAGATCGTTAGGTGA...........................................................................................................................................................................................................................................2247.0028002000012140081000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCT...................................................................2317.00700100000013020000
............................................ACAGATCGTTAGGTGA...........................................................................................................................................................................................................................................1646.7527000000125018010000
..............CGCC--------------------CGGAGAACAGATCGTTAGGTGA...........................................................................................................................................................................................................................................2646.7527001000120110192000
......................................CGGAGAACAGATCGTTAGGTGAAA.........................................................................................................................................................................................................................................2446.5026000000012230090000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTTTT..............................................2076.43450000130455126000000
.......................................................................................................................................TGCACCGAGAAG-------------------------------------AAAGCGCCATCTA..................................................................................................2516.00600000002020020000
.................................................................................................................................................................................................TCTATGCCTGAGGACTCGT--------GCAGCGCT...................................................................2716.00600100001022000000
............................................................TTTCCGTAGCTGCTAGCTTTAGTC-AA................................................................................................................................................................................................................2626.001200010003061010000
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-GGA-GC..................................................2716.00600030000003000000
................CC--------------------CGGAGAACAGATCGTTAGGTG............................................................................................................................................................................................................................................2345.7523002000020120151000
.......................................................................GCTAGCTTTAGTC-AG................................................................................................................................................................................................................1525.5011000000000011000000
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCGCTGCC................................................................2815.00500000011002010000
.......................................................................................T--------------------------------------------GAGTGCACCGAGAAG-------------------------------------AAAGCGCC.......................................................................................................2415.00500000000004010000
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCGCTG..................................................................2615.00500000000021020000
......................................................................................................................................................................................................GCCTGAGGACTCGT--------GCAGCGCTGCCA...............................................................2615.00500000000010040000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTTAGGTG............................................................................................................................................................................................................................................3015.00500000032000000000
............................................ACAGATCGTTAGGTG............................................................................................................................................................................................................................................1544.5018000000160002000000
..............................................................TCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------...................................................................................................................................................................2524.50900003012021000000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCCAGCTG.................23104.404400126130000012100000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCCAGCTGACTG.............2774.2930012170000001000000
.................C--------------------CGGAGAACAGATCGTTAGGTGAA..........................................................................................................................................................................................................................................2444.2517000000010120040000
........................................................................................................................................................................................................................................................................TGCTATCCCAGCTGACTGCGTGATCA.....2644.2517000000102300101000
......................................CGGAGAACAGATCGTTAGGTGATTT........................................................................................................................................................................................................................................2534.001200200012040030000
...............................................................................................................................................................................................................CTCGT--------GCAGCGCTGCCAGACCTG-GGA-....................................................2614.00400010030000000000
........................................................................................................................................GCACCGAGAAG-------------------------------------AAAGCGCCA......................................................................................................2014.00400000000004000000
.......................................................................................T--------------------------------------------GAGTGCACCGAGAAG-------------------------------------AAAGCGCCA......................................................................................................2514.00400000000002020000
.......................................................................................................................................TGCACCGAGAAG-------------------------------------AAAGCGCCATCTATG................................................................................................2714.00400000001000030000
....................................................TTAGGTGATTTCCGTAGCTGCTAGCT.........................................................................................................................................................................................................................2634.001200000062220000000
...........................................................................................................................................................................................................................................................TGTTTACCAGCACTGCTATCCCAGC...................2514.00400000000000040000
............................................................TTTCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------A..................................................................................................................................................................2824.00800000015020000000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTTT................................................................................................................................................................................................................................................2614.00400000020020000000
....................................................................................................................................................................................................................................GCCAGACCTG-GGA-GCTTTTGCTGTT........................................2514.00400000002011000000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCC......................18133.77490000301500004000000
.................................................TCGTTAGGTGATTTCCGTAGCTGC..............................................................................................................................................................................................................................2433.671100000000317000000
.................C--------------------CGGAGAACAGATCGTTAGGTGA...........................................................................................................................................................................................................................................2343.501400000004062020000
........................................................................................................................................................................................................................................................................TGCTATCCCAGCTGACTGCGTGA........2343.501400000023701010000
............................................................TTTCCGTAGCTGCTAGCTTTAGTC-AGA--------------------------------------------...................................................................................................................................................................2723.50700000025000000000
.......................................GGAGAACAGATCGTTAGGTGAAA.........................................................................................................................................................................................................................................2343.5014000000110200100000
.......................................GGAGAACAGATCGTTAGGTGAA..........................................................................................................................................................................................................................................2243.501400000002210090000
...............GCC--------------------CGGAGAACAGATCGTTAGGTGA...........................................................................................................................................................................................................................................2543.501400000011030081000
..............CGCC--------------------CGGAGAACAGATCGTTAGGTGAA..........................................................................................................................................................................................................................................2743.251300000003030070000
............................................................TTTCCGTAGCTGCTAGCT.........................................................................................................................................................................................................................1843.2513000000010012000000
.......................................GGAGAACAGATCGTTAGGTGA...........................................................................................................................................................................................................................................2143.251300000014120050000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATCCCAGCTGACT..............2673.142200050003077000000
..............................................................................................................................................................................................................................AGCGCTGCCAGACCTG-GGA-GCTTT...............................................2473.1422000000000022000000
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-GG......................................................2413.00300020001000000000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTTAAA..............................................................................................................................................................................................................................................2813.00300000002000010000
.................................................TCGTTAGGTGATTTCCGTAGCTGCTAG...........................................................................................................................................................................................................................2733.00900000020520000000
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GGA-G...................................................2313.00300000000003000000
...........................................................................................................................................................................................................AGGACTCGT--------GCAGCGCTGCCAGACC...........................................................2513.00300000010101000000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAGACA...........................................................2713.00300000000000030000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTTAA...............................................................................................................................................................................................................................................2713.00300000001010010000
.......................................................................................................................................TGCACCGAGAAG-------------------------------------AAAGCGCCATCTAT.................................................................................................2613.00300000002000010000
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GGA-GCT.................................................2513.00300000000002100000
...TAGCCATCGGCCGCC--------------------CGGAGAACAGAT.....................................................................................................................................................................................................................................................2713.00300000003000000000
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GGA-....................................................2213.00300000010020000000
...............................................................................................................................................GAAG-------------------------------------AAAGCGCCATCTATGCCTGAGGAC.......................................................................................2813.00300000000010110000
...............................................................................................................................................GAAG-------------------------------------AAAGCGCCATCTATGCCTGA...........................................................................................2413.00300000200001000000
...TAGCCATCGGCCGCC--------------------CGGAGAACAGATC....................................................................................................................................................................................................................................................2813.00300000002010000000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCTA..................................................................2413.00300000000000030000
..........................................................................................................................................................................................AGCGCCATCTATGCCTGAGGACTCGT--------GC.........................................................................2813.00300000002010000000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTTAGA..............................................................................................................................................................................................................................................2813.00300000010000020000
..........CGGCCGCC--------------------CGGAGAACAGATCGTTAG...............................................................................................................................................................................................................................................2613.00300000000000030000
...........GGCCGCC--------------------CGGAGAACAGATCGTTA................................................................................................................................................................................................................................................2413.00300000002100000000
...........................................AACAGATCGTTAGGTGA...........................................................................................................................................................................................................................................1742.751100000020009000000
......................................................................TGCTAGCTTTAGTC-AG................................................................................................................................................................................................................1622.50500000000005000000
.............................................................TTCCGTAGCTGCTAGCTTTAGTC-AG................................................................................................................................................................................................................2522.50500000001022000000
.......................................GGAGAACAGATCGTTAGGTGAAAA........................................................................................................................................................................................................................................2442.501000000014100040000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTTT...............................................1992.3321000000013413000000
.................................................TCGTTAGGTGATTTCCGTAGCTGCT.............................................................................................................................................................................................................................2532.33700000030301000000
...............GCC--------------------CGGAGAACAGATCGTTAGG..............................................................................................................................................................................................................................................2242.25900000000100080000
..............CGCC--------------------CGGAGAACAGATCGTTAG...............................................................................................................................................................................................................................................2242.25900000014030010000
...............GCC--------------------CGGAGAACAGATCGTTAGGTGAA..........................................................................................................................................................................................................................................2642.25900000001001061000
...........................................................................................................................................................................................................................................................................TATCCCAGCTGACTGCGTGATCAGC...2542.25900010010241000000
................CC--------------------CGGAGAACAGATCGTTAGGTGA...........................................................................................................................................................................................................................................2442.25900200002110030000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GC..................................................16112.0923000000000023000000
............................................................................................................................................................................................................................................................GTTTACCAGCACTGCTATCCCAGC...................24122.08250000001301020000000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCTGCCAA..............................................................2812.00200000000000020000
................................................................................................................................................................................................................TCGT--------GCAGCGCTGCCAGACCTG-GGA-A...................................................2612.00200000001010000000
...............................................................................................................................................GAAG-------------------------------------AAAGCGCCATCTAT.................................................................................................1812.00200002000000000000
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GGA-GC..................................................2412.00200000000002000000
.....................................................TAGGTGATTTCCGTAGCTGCTAGCTTT.......................................................................................................................................................................................................................2732.00600000030210000000
...............................................................................................................................................GAAG-------------------------------------AAAGCGCCATCTATGCCTGAG..........................................................................................2512.00200000000000020000
...............................................................................................................................................GAAG-------------------------------------AAAGCGCCATCTATGCCTGAGG.........................................................................................2612.00200010000001000000
.........................................................TGATTTCCGTAGCTGCTAGCTTTAGTC-..................................................................................................................................................................................................................2722.00400000000220000000
......................................................................................................................................................................................................GCCTGAGGACTCGT--------GCAGCGCTGCCAG..............................................................2712.00200000000000020000
.......................................................................................T--------------------------------------------GAGTGCACCGAGAAG-------------------------------------AAAGC..........................................................................................................2112.00200000000002000000
.....................................................................................AGT--------------------------------------------GAGTGCACCGAGAAG-------------------------------------AAAGCGCCA......................................................................................................2712.00200000000001010000
..........................................GAACAGATCGTTAGGTG............................................................................................................................................................................................................................................1742.00800000002006000000
......................................CGGAGAACAGATCGTTAGGTGAAAA........................................................................................................................................................................................................................................2542.00800000012120020000
.............................................................TTCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------G..................................................................................................................................................................2722.00400000000220000000
....................................................................................................................................GAGTGCACCGAGAAG-------------------------------------AAAGCGCC.......................................................................................................2312.00200000000002000000
..........CGGCCGCC--------------------CGGAGAACAGATCGTTAGGT.............................................................................................................................................................................................................................................2812.00200000001000010000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTTAGGA.............................................................................................................................................................................................................................................2912.00200000011000000000
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCG.....................................................................2312.00200000000020000000
.................................................................................................................................................................................................................CGT--------GCAGCGCTGCCAGACCTG-GGA-....................................................2412.00200000001100000000
..........CGGCCGCC--------------------CGGAGAACAGATCGTTAA...............................................................................................................................................................................................................................................2612.00200000000000020000
.......................................................................................................................................................................................................CCTGAGGACTCGT--------GCAGCGCTGCC................................................................2412.00200000002000000000
............GCCGCC--------------------CGGAGAACAGATCGTTAGG..............................................................................................................................................................................................................................................2512.00200000000100001000
..............CGCC--------------------CGGAGAACAGATCGTTAGGTGATT.........................................................................................................................................................................................................................................2832.00600000000320010000
...........GGCCGCC--------------------CGGAGAACAGATCGTTAGT..............................................................................................................................................................................................................................................2612.00200000001010000000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAGACCA..........................................................2812.00200000000000020000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCC................................................................2212.00200000000002000000
...............................................................................................................................................GAAG-------------------------------------AAAGCGCCATCTATGCC..............................................................................................2112.00200002000000000000
...TAGCCATCGGCCGCC--------------------CGGAGAACA........................................................................................................................................................................................................................................................2412.00200000001001000000
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GGA-GCTTT...............................................2712.00200010000001000000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAGAAA...........................................................2712.00200000000000020000
............................................................................................................................................................................................................................................TG-GGA-GCTTTTGCTGTTTACCAGC.................................2412.00200000000002000000
............................................................................................................................................................................................................................................TG-GGA-GCTTTTGCTGTTTACCAGCA................................2512.00200000000002000000
.......................................................................................T--------------------------------------------GAGTGCACCGAGAAG-------------------------------------AAAGCGCCATC....................................................................................................2712.00200000000001010000
...TAGCCATCGGCCGCC--------------------CGGAGAACAG.......................................................................................................................................................................................................................................................2512.00200000002000000000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAGACTA..........................................................2812.00200000000000020000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTTAGT..............................................................................................................................................................................................................................................2812.00200000001000010000
........................................................................................................................................................................................................................................GACCTG-GGA-GCTTTTGCTGT.........................................2012.00200000000002000000
......................................................................................................................................................................................................GCCTGAGGACTCGT--------GCAGCGCTGCCAGA.............................................................2812.00200000000000002000
.......................................GGAGAACAGATCGTTAGGTG............................................................................................................................................................................................................................................2042.00800000000020060000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGCCAGAAAA..........................................................2812.00200000000000020000
...................................................................................................................................................................................................TATGCCTGAGGACTCGT--------GCAGCGCTA..................................................................2612.00200000000000020000
...TAGCCATCGGCCGCC--------------------CGGAGA...........................................................................................................................................................................................................................................................2112.00200000002000000000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGC....................................................................2212.00200000000001010000
.......................................................................................................................................TGCACCGAGAAG-------------------------------------AAAGC..........................................................................................................1712.00200000000002000000
........................................................................................................................................GCACCGAGAAG-------------------------------------AAAGC..........................................................................................................1612.00200000000002000000
...........GGCCGCC--------------------CGGAGAACAGATCGTTAG...............................................................................................................................................................................................................................................2512.00200000001000010000
.................................................................................................................................................................................................TCTATGCCTGAGGACTCGT--------GCAGCG.....................................................................2512.00200000001001000000
...........GGCCGCC--------------------CGGAGAACAGATCGTTAGGA.............................................................................................................................................................................................................................................2712.00200000000000020000
.........................................................................TAGCTTTAGTC-AGT--------------------------------------------GAGTGCACCGAGA......................................................................................................................................................2712.00200000010001000000
........................................................................................................................................................................................................................................................................TGCTATCCCAGCTGACTGCGTGAT.......2442.00800000011222000000
............GCCGCC--------------------CGGAGAACAGATCGTTAGGT.............................................................................................................................................................................................................................................2612.00200000000000020000
...TAGCCATCGGCCGCC--------------------CGGAGAAC.........................................................................................................................................................................................................................................................2312.00200000002000000000
............................................................................................................................................................................................................................................................GTTTACCAGCACTGCTATCCCAGCT..................25121.8322000000160510000000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCT.................................................17111.8220000000000119000000
.................C--------------------CGGAGAACAGATCGTTAGGTGAAA.........................................................................................................................................................................................................................................2541.75700000003120010000
............................................................TTTCCGTAGCTGCTA............................................................................................................................................................................................................................1541.75700000001015000000
............................................ACAGATCGTTAGGTGATTTCCGTAGC.................................................................................................................................................................................................................................2631.67500000003110000000
......................................CGGAGAACAGATCGTTAGGTGATT.........................................................................................................................................................................................................................................2431.67500000020100020000
................CC--------------------CGGAGAACAGATCGTTAGGTGATT.........................................................................................................................................................................................................................................2631.67500000010200011000
......................................................................................................................................................................................................................................................................ACTGCTATCCCAGCTGA................17101.6016000000000016000000
............................................................TTTCCGTAGCTGCTAG...........................................................................................................................................................................................................................1641.50600000001005000000
............................................................TTTCCGTAGCTGCTAGCTT........................................................................................................................................................................................................................1941.50600000010104000000
..............................................................TCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------G..................................................................................................................................................................2621.50300000002100000000
.............................................................TTCCGTAGCTGCTAGCTTTAGTC-AGT--------------------------------------------...................................................................................................................................................................2621.50300100000020000000
......................................................................TGCTAGCTTTAGTC-AGT--------------------------------------------GAGTGCA............................................................................................................................................................2421.50300000000030000000
.....................................................................CTGCTAGCTTTAGTC-AG................................................................................................................................................................................................................1721.50300000000003000000
..............................................................................................................................................................................................................................AGCGCTGCCAGACCTG-GGA-GC..................................................2191.441300000010237000000
...................................................................................................................................................................................................................................TGCCAGACCTG-GGA-GCTT................................................1891.331200200000019000000
.......................................GGAGAACAGATCGTTAGGTGAT..........................................................................................................................................................................................................................................2231.33400100000002010000
...............GCC--------------------CGGAGAACAGATCGTTAGGTGAT..........................................................................................................................................................................................................................................2631.33400000002100010000
.....................................................TAGGTGATTTCCGTAGCTGCTAGCT.........................................................................................................................................................................................................................2531.33400000000211000000
....................................................TTAGGTGATTTCCGTAGCTGCTAGC..........................................................................................................................................................................................................................2531.33400000030100000000
.......................................GGAGAACAGATCGTTAGGTGATTTC.......................................................................................................................................................................................................................................2531.33400000003010000000
........................................................................................................................................................................................................................................................................................TGCGTGATCAGCTGG1561.33800000011006000000
...............................................................................................................................................................................................................................................................TACCAGCACTGCTATC........................16131.3117000000000017000000
......................................................................................................................................................................................................................................................................ACTGCTATCCCAGCTGAC...............18101.3013000000000013000000
............................................................................................................................................................................................................................................................GTTTACCAGCACTGCTATCCCAGCTGA................2781.251000000030520000000
...................................................................................................................................................................................................................................................................AGCACTGCTATCCCAGCTGACTGCGTGA........2841.25500000020120000000
...............GCC--------------------CGGAGAACAGATCGTTAGGT.............................................................................................................................................................................................................................................2341.25500000000000050000
................CC--------------------CGGAGAACAGATCGTTAGGTGAA..........................................................................................................................................................................................................................................2541.25500000000300020000
..............CGCC--------------------CGGAGAACAGA......................................................................................................................................................................................................................................................1591.221100000015311000000
..............................................................................................................................................................................................................................AGCGCTGCCAGACCTG-GGA-GCT.................................................2291.1110000000000010000000
.......................................................................GCTAGCTTTAGTC-AGT--------------------------------------------...................................................................................................................................................................1621.00200000000002000000
.......................................................................................................................................TGCACCGAGAAG-------------------------------------AAAGCGCCATCTAAA................................................................................................2711.00100000000000010000
............GCCGCC--------------------CGGAGAACA........................................................................................................................................................................................................................................................1511.00100000000001000000
...........GGCCGCC--------------------CGGAGAACAGATCGTT.................................................................................................................................................................................................................................................2311.00100000000001000000
...........GGCCGCC--------------------CGGAGAACAGATCGTTAGGTGA...........................................................................................................................................................................................................................................2911.00100000000100000000
.........................................................................................................................................................................................................TGAGGACTCGT--------GCAGCGCTGC.................................................................2111.00100000000000010000
.................................................................GTAGCTGCTAGCTTTAGTC-AG................................................................................................................................................................................................................2121.00200000000002000000
...............................................................................................................................................GAAG-------------------------------------AAAGCGCCATCTATGCCT.............................................................................................2211.00100000000001000000
.................................................TCGTTAGGTGATTTCCGTAGCTGCTA............................................................................................................................................................................................................................2631.00300000001200000000
...........GGCCGCC--------------------CGGAGAACAGATCGTTAA...............................................................................................................................................................................................................................................2511.00100000001000000000
..........................................................................................................................................................................................................GAGGACTCGT--------GCAGCGCTGCCAG..............................................................2311.00100010000000000000
.....................................................................................................................................................................................................TGCCTGAGGACTCGT--------GCAGCGCTGA.................................................................2511.00100000000000010000
........................................................................................................................................................................................................CTGAGGACTCGT--------GCAGCGCTGCCAG..............................................................2511.00100000001000000000
...................................................................................................................................................................................................................T--------GCAGCGCTGCCAGACCTG-GGA-GCTT................................................2611.00100000000001000000
.........TCGGCCGCC--------------------CGGAGAACAGATCGTT.................................................................................................................................................................................................................................................2511.00100000000010000000
..............................................................................TTAGTC-AGT--------------------------------------------GAGTGCACCGAGA......................................................................................................................................................2211.00100000000100000000
......................................CGGAGAACAGATCGTTAGGTGT...........................................................................................................................................................................................................................................2241.00400000004000000000
...........................................................................................................................................CCGAGAAG-------------------------------------AAAGCGCCA......................................................................................................1711.00100000000001000000
.........................................................................TAGCTTTAGTC-AGT--------------------------------------------GAGTGCACCGA........................................................................................................................................................2511.00100000000001000000
.........TCGGCCGCC--------------------CGGAGAACAGATC....................................................................................................................................................................................................................................................2211.00100000000100000000
dm3
GGATAACCGTTGACCGCCCATTTATGTATGCTACGCC-CGGTGGACAGATCGTTAGGTGATTTCCGTAGCTGCTAGCTTTTGTC-AGT--------------------------------------------GATTGCACTGAGAGG-------------------------------------AAAGCGCCACCTATGCCAGAGGACTCGTGCAGCCGACCAGCGCT-CTGGATCT--GGA-GCTTTTGCCGTTTGCCAGCACTGCTATCCAAGCTGACTGCGTGATCAGCTGGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................GAGGACTCGTGCAGCCGACCAGCGC....................................................................2522.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TGGACAGATCGTTAGGTGATTT........................................................................................................................................................................................................................................2221.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................GAGGACTCGTGCAGCCGACCAGCGCT-..................................................................2621.0020000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TGCCAGAGGACTCGTGCAGCCGAC..........................................................................2421.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................................GTGGACAGATCGTTAGGTGATTTCC......................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................TGCCAGAGGACTCGTGCAGCC.............................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................GGACAGATCGTTAGGTGATTT........................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.......................................................................................................................................................................................................CCAGAGGACTCGTGCAGCCGACCAG.......................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................GCCAGAGGACTCGTGCAGCC.............................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................TGCACTGAGAGG-------------------------------------AAAGCGCCACC....................................................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................ACTCGTGCAGCCGACCAGCGC....................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................CAGAGGACTCGTGCAGCCGACCA........................................................................2320.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
droEre2
GGAAAGT--------------------ATGCCACAAC-AGGTGACTCGATCGTTTGTCGATTCACGTAGCAGATAGCGTTTGAC-AGCAGACG------------------------------------------AGTGCCG---AT-------------------------------------ACAGCGCCATCTGTGCTTGGGCGCACCTGCGGTT--------AAACAAGA--T--GGG-GCTTTGGCCGCATACCAACACTACTTTCACAGCTGTCTGCGGAATCAGCACGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.........................................................................TAGCGTTTGAC-AGCAGACG------------------------------------------AGTGCCG---A.....................................................................................................................................................2711.0011000000
................................................................................TGAC-AGCAGACG------------------------------------------AGTGCCG---AT-------------------------------------ACAG...........................................................................................................2511.0011000000
droYak3
GGATTGTCGTCAGCAGCCCAGGAAAGTATGCTACGTT-TAGAGACGAGATCGTTTGGCTAGTTATGTAGCAATTTGCTTCTGATCAGT-AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTGTGGTTGGGGTCGCCTTCGGCTGTGCAGCGCTGCCAGACCG--GTA-GCCTGAGCCGTTTTCCAACACTGGTTTAGCAGCTGAGAGTGAGATCAGCTGGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........................................................................................GCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTGT.................................................................................................25612.50750560100300015
................................................................................................................................................................................................................................................................TCCAACACTGGTTTAGCAGCTGAGAGT............27212.5025020000000023
..........................................................................................GCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTG..................................................................................................24610.6764060220000000
......................................TAGAGACGAGATCGTTTGGCTAGT.........................................................................................................................................................................................................................................2436.6720000000000020
..........................................................................................GCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTGTG................................................................................................2664.3326026000000000
...............................TACGTT-TAGAGACGAGATCGTTTGG..............................................................................................................................................................................................................................................2534.0012000000000012
..........................................................................................GCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTGTGG...............................................................................................2763.8323023000000000
......................................TAGAGACGAGATCGTTTGGCTAGTTATG.....................................................................................................................................................................................................................................2833.6711000000000011
..........................................................................................GCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTGTGGT..............................................................................................2862.5015012000000003
........................................................................................................................................................................................................TTGGGGTCGCCTTCGGCTGTGCAGCGC....................................................................2732.33706100000000
....................................................................................................................................................................................................................................GCCAGACCG--GTA-GCCTGAGCCGTTTTC.....................................2712.00200200000000
....................................................................................................................................................................................................................................GCCAGACCG--GTA-GCCTGAGCCGTT........................................2412.00202000000000
.........................................................................................................................................................................................................TGGGGTCGCCTTCGGCTGTGCAGCGC....................................................................2632.00603210000000
...................................................................................................................................................................................................................................TGCCAGACCG--GTA-GCCTGAGCCGTT........................................2512.00202000000000
...................................................................................................................................................................................................................................TGCCAGACCG--GTA-GCCTGAGCCGTTT.......................................2612.00202000000000
......................................TAGAGACGAGATCGTTTGGCTAGTTA.......................................................................................................................................................................................................................................2631.67505000000000
.........TCAGCAGCCCAGGAAAGTATGCTACGT...................................................................................................................................................................................................................................................................2721.50303000000000
................................................................................TGATCAGT-AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCC.......................................................................................................2821.50301200000000
.............................................................................................................................................T----AG-------------------------------------AAGCGCCACCTGTGGTTGGGG.........................................................................................2471.4310000000000010
.........................................................................................................................................................................................................TGGGGTCGCCTTCGGCTGTGCAGCGCT...................................................................2731.33404000000000
............................................CGAGATCGTTTGGCTAGTTATGTAGC.................................................................................................................................................................................................................................2631.33403100000000
.......................................................................................T-AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTG..................................................................................................2661.17706100000000
.........................................................................................................................................TCCCT----AG-------------------------------------AAGCGCCACCTGTGGTT.............................................................................................2461.17706000010000
....................................................................................................................................................................................................................................GCCAGACCG--GTA-GCCTGAGCCGTTT.......................................2511.00101000000000
...................................................................................................................................................................................................................................................GCCTGAGCCGTTTTCCAACACTGG............................2411.00101000000000
.......................................................................................T-AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACC....................................................................................................2461.00603300000000
...............................TACGTT-TAGAGACGAGATCGTTTGGC.............................................................................................................................................................................................................................................2631.00302100000000
.................................................................................................................................................................................................................................................A-GCCTGAGCCGTTTTCCAACACTGG............................2511.00101000000000
...............................................................................................................................................................................................................CGCCTTCGGCTGTGCAGCGCTGCCAG..............................................................2660.83501000000004
................................ACGTT-TAGAGACGAGATCGTTTGGC.............................................................................................................................................................................................................................................2530.67202000000000
............................................CGAGATCGTTTGGCTAGTTATGTAGCA................................................................................................................................................................................................................................2730.67211000000000
.............................................................................................................................................T----AG-------------------------------------AAGCGCCACCTGTGGTTGGGGT........................................................................................2530.67202000000000
............................................CGAGATCGTTTGGCTAGTTATGTAG..................................................................................................................................................................................................................................2530.67202000000000
.........................................................................................................................................................................................................TGGGGTCGCCTTCGGCTGTGCAGC......................................................................2430.67201100000000
..............................................................................................................................................................................................................TCGCCTTCGGCTGTGCAGCGCTGCC................................................................2530.67201100000000
..............................................................................................................................................................................................................TCGCCTTCGGCTGTGCAGCGCTGCCA...............................................................2630.67202000000000
............................................CGAGATCGTTTGGCTAGTTATGTAGCAA...............................................................................................................................................................................................................................2830.67201100000000
...................................................................................................................................................................................................................TTCGGCTGTGCAGCGCTGCCAGACC...........................................................2580.63503200000000
..........................................................................................................................................................................................................................................................................GTTTAGCAGCTGAGAGTGAGATCAGC...2620.50100100000000
..........................................................................................GCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCT...................................................................................................2360.50303000000000
.......................................................................................................................................................................................................................................................GAGCCGTTTTCCAACACTG.............................1920.50101000000000
......TCGTCAGCAGCCCAGGAAAGTATGCT.......................................................................................................................................................................................................................................................................2620.50101000000000
...........................................................................................................................................................................................................................................................................TTTAGCAGCTGAGAGTGAGATC......2220.50101000000000
...............................................................................................................................................................................................................................................................TTCCAACACTGGTTTAGCAGCTGAGAGT............2820.50101000000000
..........................................................................TGCTTCTGATCAGT-AGCA------------------------------------------TTTCCCT----AG-------------------------------------A.............................................................................................................2820.50101000000000
................................................................................................................................................................................................................................................................TCCAACACTGGTTTAGCAGCTGAGAG.............2620.50101000000000
..........................................................TAGTTATGTAGCAATTTGCTTCTGA....................................................................................................................................................................................................................2520.50101000000000
.......................................................................................................................................................................................................................................................GAGCCGTTTTCCAACACTGGTTTAGC......................2620.50101000000000
..................................................................TAGCAATTTGCTTCTGATCAGT-AGCA------------------------------------------TT..............................................................................................................................................................2820.50101000000000
...............................................................................................................................................................................................................................................................TTCCAACACTGGTTTAGCAGCTGAG...............2520.50101000000000
......TCGTCAGCAGCCCAGGAAAGTATGC........................................................................................................................................................................................................................................................................2520.50101000000000
.................................................................................GATCAGT-AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCC.......................................................................................................2720.50101000000000
......................................................................................................................................................................................................................................................TGAGCCGTTTTCCAACACTGGTTTAGC......................2720.50101000000000
.........................................................................................................................................................................................................................................................................GGTTTAGCAGCTGAGAGTGAGAT.......2320.50101000000000
..............................................................................TCTGATCAGT-AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAG...........................................................................................................2620.50101000000000
..........................................................................................GCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCG.........................................................................................................1770.43300000000003
.......................................................................................................................................TTTCCCT----AG-------------------------------------AAGCGCCACCTGTGGTT.............................................................................................2660.33202000000000
........................................................................................................................................................................................................TTGGGGTCGCCTTCGGCTGTGC.........................................................................2230.33100100000000
.....................................................................................................................................................................................................TGGTTGGGGTCGCCTTCGGCTGTGC.........................................................................2530.33101000000000
.....................................................................................................................................................................................................TGGTTGGGGTCGCCTTCGGCTGTG..........................................................................2430.33101000000000
....................................T-TAGAGACGAGATCGTTTGGCT............................................................................................................................................................................................................................................2230.33100000010000
.......................................................................................................................................................................................................................GCTGTGCAGCGCTGCCAGACCG--GT......................................................2430.33101000000000
.......................................................................................T-AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCT...................................................................................................2560.33202000000000
................................................................................................................................................................................................................................................................TCCAACACTGGTTTAGCAGC...................2030.33101000000000
...........................................................................................................................................................................................................................TGCAGCGCTGCCAGACCG--GTA-....................................................2130.33100100000000
...........................................................................................CA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTG..................................................................................................2360.33202000000000
........................................................................................................................................................................................................TTGGGGTCGCCTTCGGCTGTGCAGCGCA...................................................................2830.33101000000000
...............................TACGTT-TAGAGACGAGATCGTTTGGCT............................................................................................................................................................................................................................................2730.33101000000000
.......................................................................................................................................TTTCCCT----AG-------------------------------------AAGCGCCACCTGTGGT..............................................................................................2560.33202000000000
.............................................................................................................................................................................................GCCACCTGTGGTTGGGGTCGCCTTCG................................................................................2630.33101000000000
..........................................GACGAGATCGTTTGGCTAGTTATGT....................................................................................................................................................................................................................................2530.33101000000000
...........................................................................................................................................................................................................................................................CGTTTTCCAACACTGGTTTAGCAG....................2430.33101000000000
...................................................................................................................................................G-------------------------------------AAGCGCCACCTGTGGTTGGGGTCG......................................................................................2530.33101000000000
............................................CGAGATCGTTTGGCTAGTTATGTA...................................................................................................................................................................................................................................2430.33101000000000
..............................................................................................................................................................................................................TCGCCTTCGGCTGTGCAGCGCTGC.................................................................2430.33101000000000
...........................................................................................CA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTGT.................................................................................................2460.33202000000000
............................................................................................................................................................................................CGCCACCTGTGGTTGGGGTCGCCT...................................................................................2430.33101000000000
..............................................................................................................................................................................................................TCGCCTTCGGCTGTGCAGCGCTG..................................................................2330.33100000010000
........................................................................................................................................................................................................TTGGGGTCGCCTTCGGCTGTGCAGC......................................................................2530.33100100000000
..........................................................................................................................................................................................................GGGGTCGCCTTCGGCTGTGCAGC......................................................................2330.33100100000000
...........................................................................................................................................................................................................................................................CGTTTTCCAACACTGGTTTAGCA.....................2330.33101000000000
........................................................................................................................................................................................................TTGGGGTCGCCTTCGGCTGTGCAGCGCT...................................................................2830.33100100000000
............................................................................................................................................................................................................................................................GTTTTCCAACACTGGTTTAGCAGC...................2430.33101000000000
.......................................AGAGACGAGATCGTTTGGCTAGTTA.......................................................................................................................................................................................................................................2550.20101000000000
.......................................................................................T-AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACA....................................................................................................2460.17101000000000
.......................................................................................................................................TTTCCCT----AG-------------------------------------AAGCGCCACCTGTGG...............................................................................................2460.17101000000000
.....................................................................................AGT-AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCG...................................................................................................2760.17101000000000
...............................................................................................................................................................................................................CGCCTTCGGCTGTGCAGCGCTGCCA...............................................................2560.17101000000000
..........................................................................................................................................CCCT----AG-------------------------------------AAGCGCCACCTG..................................................................................................1860.17101000000000
.........................................................................................AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTG..................................................................................................2560.17101000000000
...............................................................................................................................................................................................................CGCCTTCGGCTGTGCAGCGCTGCC................................................................2460.17100100000000
.........................................................................................AGCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACC....................................................................................................2360.17101000000000
.........................................................................................................................................TCCCT----AG-------------------------------------AAGCGCCACCTGTGGTTG............................................................................................2560.17100100000000
..........................................................................................GCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACC....................................................................................................2260.17101000000000
..........................................................................................GCA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTGTGGTT.............................................................................................2960.17101000000000
...........................................................................................CA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTGTGG...............................................................................................2660.17101000000000
........................................................................................................................................TTCCCT----AG-------------------------------------AAGCGCCACCTGTGGTT.............................................................................................2560.17101000000000
..........................................................................................................................................CCCT----AG-------------------------------------AAGCGCCACCTGTGGTT.............................................................................................2360.17101000000000
...............................................................................................................................................................................................................CGCCTTCGGCTGTGCAGCGCTGCCAGAA............................................................2860.17100100000000
...........................................................................................CA------------------------------------------TTTCCCT----AG-------------------------------------AAGCGCCACCTGTG................................................................................................2560.17101000000000
........................................................................................................................................TTCCCT----AG-------------------------------------AAGCGCCACCTGTGG...............................................................................................2360.17101000000000
.............................................................................................................................................T----AG-------------------------------------AAGCGCCACCTGTGGTTGGG..........................................................................................2370.14100010000000
.............................................................................................................................................T----AG-------------------------------------AAGCGCCACCTGTGGTTGG...........................................................................................2270.14101000000000
....................................................................................................................................................................................................................TCGGCTGTGCAGCGCTGCCAGACC...........................................................2480.13101000000000
...................................................................................................................................................................................................................TTCGGCTGTGCAGCGCTGCCAG..............................................................2280.13100100000000
............................................CGAGATCGTTTGGCTAGT.........................................................................................................................................................................................................................................1890.11101000000000
droTak1
GGATTGGCAGCAGCAGCCCAGGAATGTTTGCTAC-------------GATCTTGAAGTGAAACCCGTAGCAGGTACCTTTTGTC-AGT--------------------------------------------GAGCGC--------AACAGCGCTCCCA------GGCGGTCAGGT----------------------GCC--ACAAGTTAT--------ACAGCGTGGCCAGATCAGT-GC-CGTCCTTGCGTTT-ACAACACTGGTTTT-CAGCTGTTTAAGAGATCAGCTGGSizeHit CountTotal NormTotal
No Reads
droEle1
GGAAA----------GACCGGGAATGTATGCTACGACCCGCTGTTTTGATCGTTTGTCGATTTTCGTAGCGGTTAGCTTTTGTA-AGCATGCG------------------------------------------AGCAC------GGAAGCGCCCCCACAAGTCGGGGGCCAGTCGCTGCCATAT----------------------------AGCGGCGACGTGCTGCCAGACCGGT-GCAATTTCACCCGTTTTCCAACACTGGTTTCGCATCTAATTGCGTGATCAACTGGSizeHit CountTotal NormTotal
No Reads
droKik1
GGACTTCGGGCAGCAGCCCGGGAATTTCCGCA-------------GCGATCGTTAGCTGAAGCTTGTAGCAAGCAGCTTCTGTC-ACGTGTCAGGGTTTTTACCCCGTAGGTGGCGCTAATGTTCACATGTAGAGTGC--------AGC-----------------------------------------------------------------GGCGCTGCAGTGCTGCCACACAGCT-GC-ATTGCGCTCGCTTCACTACACTGCA-CGCCAGCTGATCGAGCAATCAGCTGASizeHit CountTotal NormTotal
No Reads

Generated: 05/15/2015 at 02:28 PM