dse_821

Name	Class	Family	Strand
FW_DM	LINE	Jockey	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TTCCTAGCCACCTGGCAGCAGCACCTGAAGCGGAAAACTCTGGGCAAAGTGTAAGGCTAGGCGGGTCAAGGATTTTTATTTCTGCAGGAGAACACACCCACATCCATGGCAAGTGCAAATACACACAGAAATTTGCGATAACAGTAGAGCAGGTGGTCATGAAGACCACCATCCAAGACATGATGCGTAATCAAAACCTTTTGATACAAATGCTTGTAGCCCAACAAAACAAATAAACAATGGCTACCTTA ************************************************..((((........(((..((((....((((((((((((.............))).))....(((......))).))))))).(((..((....))..)))(((((((.....)))))))))))..))).((((.....))))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V115 head	V113 male body	V114 embryo
.......................................................................................................................................................................................................TTTGATACAAATGCTTGTAGCCCAACA.........................	27	0	20	0.85	17	17	0	0	0
.................................AAAACTCTGGGCAATCTGT.......................................................................................................................................................................................................	19	2	2	0.50	1	0	1	0	0
...............................................................................................................................................GTAGAGCAGGTGGACAGGAA........................................................................................	20	2	3	0.33	1	0	0	1	0
...........................................................................................................................................................................TCCAAGACATGATGCGTAATCAAAACC.....................................................	27	0	20	0.15	3	3	0	0	0
.....................................................................................................................................................................................................CTTTTGATACAAATGCTTGTAGCCC.............................	25	0	20	0.05	1	1	0	0	0
...........................................................................................................................................................................TCCAAGACATGATGCGTAATCAAA........................................................	24	0	20	0.05	1	0	0	0	1
...........................................................................................................................................................................TCCAAGACATGATGCGTAATC...........................................................	21	0	20	0.05	1	0	1	0	0
...........................................................................................................................................................................TCCAAGACATGATGCGTAAT............................................................	20	0	20	0.05	1	0	0	0	1
................................................................................................................................................................................................................................CAAAACAAATAAACAATGGCT......	21	0	20	0.05	1	1	0	0	0
............................................................................................................................................................TTATGCAGACCACCATCGAA...........................................................................	20	3	20	0.05	1	1	0	0	0
.......................................................................................................................................................................................................TTTGATACAAATGCTTGAAGCCCAAC..........................	26	1	20	0.05	1	1	0	0	0
.......................................................................................................................................................................................................TTTGATACAAATGCTTGTAGCC..............................	22	0	20	0.05	1	1	0	0	0
.............................................................................................................................................................................CAAGACATGATGCGTAATCAAAACCTT...................................................	27	0	20	0.05	1	1	0	0	0
.........................................................................................................................................................................CATCCAAGACATGATGCGT...............................................................	19	0	20	0.05	1	0	0	0	1
...........................................................................................................................................................................TCCAAGACATGATGCGTAATCAAAACCT....................................................	28	0	20	0.05	1	1	0	0	0
.......................................................................................................................................................................................................TTTGATACCAATGCTTGTAGCCCAAC..........................	26	1	20	0.05	1	1	0	0	0

AAGGATCGGTGGACCGTCGTCGTGGACTTCGCCTTTTGAGACCCGTTTCACATTCCGATCCGCCCAGTTCCTAAAAATAAAGACGTCCTCTTGTGTGGGTGTAGGTACCGTTCACGTTTATGTGTGTCTTTAAACGCTATTGTCATCTCGTCCACCAGTACTTCTGGTGGTAGGTTCTGTACTACGCATTAGTTTTGGAAAACTATGTTTACGAACATCGGGTTGTTTTGTTTATTTGTTACCGATGGAAT ************************************************..((((........(((..((((....((((((((((((.............))).))....(((......))).))))))).(((..((....))..)))(((((((.....)))))))))))..))).((((.....))))...)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M054 female body	V114 embryo	V115 head
.............................................................................................................................................................GTACTTCTGGTGGTAGGTTCTGTACT....................................................................	26	0	20	0.75	15	13	1	1
............................................................................................................................................................AGTACTTCTGGTGGTAGGTTCTGTACT....................................................................	27	0	20	0.30	6	6	0	0
...........................................................................................................................................................................AGGTTCTGTACTACGCATTAGTTT........................................................	24	0	20	0.15	3	2	1	0
.............................................................................................................................................................GTACTTCTGGTGGTAGGTTCTGTACTA...................................................................	27	0	20	0.15	3	2	1	0
............................................................................................................................................................TGTACTTCTGGTGGTAGGTTCTGTACT....................................................................	27	1	20	0.10	2	2	0	0
...................................................................................................................................................................CTGGTGGTAGGTTCTGTACT....................................................................	20	0	20	0.10	2	0	2	0
...........................................................................................................................................................................AGGTTCTGTACTACGCATTAGTTTT.......................................................	25	0	20	0.10	2	2	0	0
.......................................................................................................................................................................................ACGCATTAGTTTTGGAAAA.................................................	19	0	20	0.10	2	2	0	0
.................................................................................................................................................................................................................TACGAACATCGGGTTGTTTT......................	20	0	20	0.05	1	0	1	0
................................................................................................................................................................CTTCTGGTGGTAGGTTCTGTACT....................................................................	23	0	20	0.05	1	1	0	0
.............................................................................................................................................................GTACTTCTGGTGGTAGGTTCTGTA......................................................................	24	0	20	0.05	1	0	1	0
..........................................................................................................................................................................................................................CGGGTTGTTTTGTTTATTTGTTACCGAT.....	28	0	20	0.05	1	1	0	0
......................................................................................................................................................................................................................ACATCGGGTTGTTTTGTTTATTTGTT...........	26	0	20	0.05	1	1	0	0
............................................................................................................................................................AGTACTTCTGGTGGTAGGTTCTGCAC.....................................................................	26	1	20	0.05	1	1	0	0
..................................................................................................GTGTCGGTACCGTTTACGTC.....................................................................................................................................	20	3	20	0.05	1	0	0	1
...................................................................................................................................................................................................................CGAACATCGGGTTGTTTTGTTTATT...............	25	0	20	0.05	1	0	0	1
.............................................................................................................................................................GTACTTCTGGTGGTAGGTTCTGTAC.....................................................................	25	0	20	0.05	1	1	0	0
.......................................................................................................................................................................TGGTAGGTTCTGTACTACGCATTAGTC.........................................................	27	1	20	0.05	1	1	0	0
..............................................................................................................................................................................................................................TTGTTTTGTTTATTTGTTACCGA......	23	0	20	0.05	1	1	0	0
........................................................................................................................................................................................AGCATTAGTCTGGGAAAACT...............................................	20	3	20	0.05	1	0	0	1
..................................................................................................................................................................................................................ACGAACATCGGGTTGTTTTGTTT..................	23	0	20	0.05	1	1	0	0
..............................................................................................................................................................TACTTCTGGTGGTAGGTTCTGTACT....................................................................	25	0	20	0.05	1	1	0	0
............................................................................................................................................................AGTACTTCTGGTGGTAGGTTCTGTATT....................................................................	27	1	20	0.05	1	1	0	0
.....................................................................................................................................................................................................................AACATCGGGTTGTTTTGTTTATTTGT............	26	0	20	0.05	1	1	0	0
.......................................................................................................................................................................................ACGCATTAGTTTGGGAAAACTATGTT..........................................	26	1	20	0.05	1	1	0	0

Species	Coordinate	ID	Alignment
droSec2	scaffold_13:586826-587076 +	dse_821	TT--CC-TAG-----------CCACCTGG-CA---GCA------GC---------ACCTGAA---GCGGAAAACTCTGGG--------CAA-AGTGTAAGGCTAGGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGGA---GA--ACACACCCACATCC------------ATGGCAAGTGCAAATACACACAGAA-----ATTTGCGATAACAGTAGAGCAGGTGGTCATGAAGACCACCATCCAAGACATGATGCGTAATCAAAACCTTTTGATACAAATGCTTGTAGCCCAACAAAACAAATAAACAATGGCTACCTTA
droSim2	3r:21299277-21299429 +		TT--CC-TAG-----------CCACCTGG-CA---GCA------GC---------ACCTGAA---GCGGAAAACTCTGGG--------CAA-AGTGTAAGGCTATGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGGA---GA--ACACACCCACATCC------------ATGGCAAGTGCAAATACACACAGAA-----ATTTGCGATAACAGTTGAGCAGG--------------------------------------------------------------------------------------------------
dm3	chr3R:21802206-21802358 +		TT--CC-TAG-----------CCACCTGG-CA---GCA------GC---------ACCTGAA---GCGGAAAACTCTGGG--------CAA-AGTGTAAGGCTAGGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGGA---GA--ACACACCCACATCC------------ATGGAAAGTGCAAATACACACAGAA-----ATTTGCGATAACAGTTGAGCAGG--------------------------------------------------------------------------------------------------
droEre2	scaffold_4820:6245633-6245785 -		TT--TC-TAG-----------CCACCTGG-CA---GCA------GC---------ACCTGAA---GCGGAAAACTCTAGG--------CAA-AGTGTAAGGCTGGGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGGA---GA--ACACACCCACATCC------------ATGGAAAGTGCAAATACACACAGAA-----GTTTGCGATAACAGTTGAGCAGG--------------------------------------------------------------------------------------------------
droYak3	3R:24677761-24677921 -		TT--TC-TAG-----------CCACCTGG-CAGCAGTAGCAGCAGC---------ACCTGAA---GCGGAAAACTCTGGG--------CAA-AGTGTAAGGCTAGGCGGGTCAAGGATT-TTAT-T-----T-CTGCAGGA---GA--ACACACCCACATCC------------ATGGAAAGTGCAAATACACACAGAA-----ATTTGCGATAACGGTAGAGCAGG--------------------------------------------------------------------------------------------------
droEug1	scf7180000409682:816255-816416 -		TT--TC-TGC-----------CCACCTG-------GCA------GC---------ACCTGAA---GCAGAAAACTCTGGG--------CAA-AGTGTAAGGCTTGGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGAC---AAATACACACCCACAAACACACACAAAGTTGTGGAAAGTGCAAATATAC--AGAC-----ATTTGCGATAATGGTAGAGCAGG--------------------------------------------------------------------------------------------------
droBia1	scf7180000302113:1998913-1999064 +		TT--TC-T-G-----------CTGGTGGG-CAG--GGA------GCACCTGAATCACCTCAG---GCGGAAAACGCTGGG---------AA-AGTGTAAGGCTTGGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGAA---AA--ACACACCCACAGCC--------------------TGTACACCCACACAGCC------GACGCGATAATAGTTGAGCAGG--------------------------------------------------------------------------------------------------
droTak1	scf7180000415851:388019-388178 -		TT--TC-TGCAGGTTTTCTGCCCACCTG--------AA------TC---------ACCTGGA---GCGGAAAACTCTGGG--------CAAAAGTGTAAGGCTTGGCGGGTCAAGGATTTTTAT-T-----TGCTGCAGAG--AAA--ACACACCCACAC-A------------GTATATGGTGCAAATACAC--AGAC-----ATTGGCGATAATAGTTGAGCAGG--------------------------------------------------------------------------------------------------
droEle1	scf7180000491246:7666-7842 +		TT--TA-TAC-----------CAAAACGA-AA---ATATACTCCGC---------GTCCAGA---GCAAAACGCTCAAAG--------ACC-AACTCAACCTTATAACCAACAAAACCA-----------------------------------------------------------------------------AAC----------------------------TTTCAATGTAAGGTACCCTCCAGGAACTAGTGCGAAACCAGAACAACTTAATGGAACTTCTACT---CAAACAAAAGTCAACTTAAATGGATCC-CTT
droRho1	scf7180000780074:140669-140790 +		TT--TC-TCT------------CAGGTGG------GCA------GC---------ACCTGAA---GCGGAAAACTCTGGG--------CAA-AATGAAAGGCTTGGTGGGTCAAGGATTTTTAT-T-----T-CTGCAGAC---AA--ACACACCCACAAAT------------TGGGAGAGCGCAAATACACA-----------------------------------------------------------------------------------------------------------------------------------
droFic1	scf7180000454055:1706112-1706256 +		TT--TC-TAC------------AAGGTGG------GCT------GC---------ACCTGAA---GCGAAAAACTCTGGC--------CAA-AGTGTAAGGCTTGGCGGGTCAAGGACTTTTAT-T-----T-CTGCAGAC---GA--GCACACCCACAG--------------ATAGAGAGAGCCGAAATACACAGAC-----ATTTGCCATAATAGTAGAGC-----------------------------------------------------------------------------------------------------
droKik1	scf7180000302475:2679944-2680103 -		CT--TT-TAA-----------CCAGGTGGCCAG--GCA------GC---------ACCCCAA---GCGGAAAACTCTCGCCAGGAGTA-GC-AGCAGAAGGCTTGGCGGGTCAAGGATTTTCCTTTTTCCTT-CTGCAGCAGGCAC--ACACATCCA--CCC------------ACCCGCAGCGCAAATACACACGGAC-----ATTTGCGATATTAG-----------------------------------------------------------------------------------------------------------
droAna3	scaffold_13340:11343828-11343981 -		TT--AC-A-G-----------CCACCTTGTTA---GCA------GC---------ACCTGGA---GCAGAAAACTCTGAG--------CCA-AGAAGAGGGCTTGGTGGGTCAAGGATATTTCT-T-----TTTTGCAGAC---GA--ACACGCCCACAATC------------GGGGAAAAAGCAAATACACGCTGGG-----GCTTGTAACATTGGCGGAGCAGG--------------------------------------------------------------------------------------------------
droBip1	scf7180000396691:252317-252470 -		TT--GC-A-G-----------CTACCTAGCTA---ACA------GC---------ACCTGGA---ACAGAAAACTCTGAG--------CCA-AGAAGAGGGCTTGGCGGGTCAAGGATATTTCT-T-----TTTTGCAGAA---AA--ACACACCCACAAAC------------GGGTGAAAAGCAAATACACATTGGG-----GCTTGTAATATTGGCGGAGCAGG--------------------------------------------------------------------------------------------------
dp5	2:19248891-19249029 -		TG--TC-AGG------------CACGGGG------ACA------GC---------CCCAGAACAGGTACAAAACTCACAG--------A-A-A-----------GTTGGGTCAAGGCTTTTTCA-T-----T-TTGCAGAC---AA--ATACA----CATTG------------AGCGAGAGAGAGAATATAC-CAGAACTCTTATTCGTGATAATCCTAGAGCA----------------------------------------------------------------------------------------------------
droPer2	scaffold_3:1995154-1995290 -		TC--A----G-----------GCACAGGG-C----ACA------GC---------CCCAGAACAGGTAGAAAACTCACAG--------A-A-A-----------GTTGGGTCAAGGCTTTTTCA-T-----T-TTGCAGAC---AA--ATACA----CAGTG------------AGCGAGAGAGAGAATATAC-CAGAACTCTTATTCGTGATAATCCTAGAGC-----------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004958:513898-514040 -		ATGGCATTTG---CACCAA--GGACAGAA------ACA----------------------------------ACGTCGC---------------ACTAAGACTATGCAGCACTAACG------T-T-----C-ATGCAAAA---CT--GTATGCACGAACTG------------ATGCGGAATCAAAACC----------------------------------------------------------------------------------TGCTTATCCAGAAGCTTATCGA----------GAATAAATAATGGCTTCCCTA
droVir3	scaffold_13036:120081-120184 +		TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATGTT---TGAAAAAATGATGGA--------TAA-AATACTAGGTCAAATGACACAGAAACTGTTTG-C-----T-CCACAT------------------------------------------------------------------TATGCAAGAAGG------TTTA--------------------------------------------------------------------------------------------------
droMoj3	scaffold_6498:754642-754681 +		TG--AT-AAT------------GATGTTA----------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------TGAACAAGTTATACAAGTAGATC----------TT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

TT--CC-TAG-----------CCACCTGG-CA---GCA------GC---------ACCTGAA---GCGGAAAACTCTGGG--------CAA-AGTGTAAGGCTAGGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGGA---GA--ACACACCCACATCC------------ATGGCAAGTGCAAATACACACAGAA-----ATTTGCGATAACAGTAGAGCAGGTGGTCATGAAGACCACCATCCAAGACATGATGCGTAATCAAAACCTTTTGATACAAATGCTTGTAGCCCAACAAAACAAATAAACAATGGCTACCTTA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................................................................................................................................................................................................................TTTGATACAAATGCTTGTAGCCCAACA.........................	27	20	0.85	17	17	0	0	0
.....................................................................................................................................................................................................................................................TCCAAGACATGATGCGTAATCAAAACC.....................................................	27	20	0.15	3	3	0	0	0
...............................................................................................................................................................................................................................................................................CTTTTGATACAAATGCTTGTAGCCC.............................	25	20	0.05	1	1	0	0	0
.....................................................................................................................................................................................................................................................TCCAAGACATGATGCGTAATCAAA........................................................	24	20	0.05	1	0	0	1	0
.....................................................................................................................................................................................................................................................TCCAAGACATGATGCGTAATC...........................................................	21	20	0.05	1	0	0	0	1
.....................................................................................................................................................................................................................................................TCCAAGACATGATGCGTAAT............................................................	20	20	0.05	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................CAAAACAAATAAACAATGGCT......	21	20	0.05	1	1	0	0	0
.................................................................................................................................................................................................................................................................................TTTGATACAAATGCTTGTAGCC..............................	22	20	0.05	1	1	0	0	0
.......................................................................................................................................................................................................................................................CAAGACATGATGCGTAATCAAAACCTT...................................................	27	20	0.05	1	1	0	0	0
...................................................................................................................................................................................................................................................CATCCAAGACATGATGCGT...............................................................	19	20	0.05	1	0	0	1	0
.....................................................................................................................................................................................................................................................TCCAAGACATGATGCGTAATCAAAACCT....................................................	28	20	0.05	1	1	0	0	0

droSim2

TT--CC-TAG-----------CCACCTGG-CA---GCA------GC---------ACCTGAA---GCGGAAAACTCTGGG--------CAA-AGTGTAAGGCTATGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGGA---GA--ACACACCCACATCC------------ATGGCAAGTGCAAATACACACAGAA-----ATTTGCGATAACAGTTGAGCAGG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................ACCTGAA---GCGGAAAACTCTGGG--------C............................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

TT--CC-TAG-----------CCACCTGG-CA---GCA------GC---------ACCTGAA---GCGGAAAACTCTGGG--------CAA-AGTGTAAGGCTAGGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGGA---GA--ACACACCCACATCC------------ATGGAAAGTGCAAATACACACAGAA-----ATTTGCGATAACAGTTGAGCAGG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................GTGTAAGGCTAGGCGGGT......................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TT--TC-TAG-----------CCACCTGG-CA---GCA------GC---------ACCTGAA---GCGGAAAACTCTAGG--------CAA-AGTGTAAGGCTGGGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGGA---GA--ACACACCCACATCC------------ATGGAAAGTGCAAATACACACAGAA-----GTTTGCGATAACAGTTGAGCAGG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

TT--TC-TAG-----------CCACCTGG-CAGCAGTAGCAGCAGC---------ACCTGAA---GCGGAAAACTCTGGG--------CAA-AGTGTAAGGCTAGGCGGGTCAAGGATT-TTAT-T-----T-CTGCAGGA---GA--ACACACCCACATCC------------ATGGAAAGTGCAAATACACACAGAA-----ATTTGCGATAACGGTAGAGCAGG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................ACCTGAA---GCGGAAAACTCTGG......................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0

droEug1

TT--TC-TGC-----------CCACCTG-------GCA------GC---------ACCTGAA---GCAGAAAACTCTGGG--------CAA-AGTGTAAGGCTTGGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGAC---AAATACACACCCACAAACACACACAAAGTTGTGGAAAGTGCAAATATAC--AGAC-----ATTTGCGATAATGGTAGAGCAGG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TT--TC-T-G-----------CTGGTGGG-CAG--GGA------GCACCTGAATCACCTCAG---GCGGAAAACGCTGGG---------AA-AGTGTAAGGCTTGGCGGGTCAAGGATTTTTAT-T-----T-CTGCAGAA---AA--ACACACCCACAGCC--------------------TGTACACCCACACAGCC------GACGCGATAATAGTTGAGCAGG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TT--TC-TGCAGGTTTTCTGCCCACCTG--------AA------TC---------ACCTGGA---GCGGAAAACTCTGGG--------CAAAAGTGTAAGGCTTGGCGGGTCAAGGATTTTTAT-T-----TGCTGCAGAG--AAA--ACACACCCACAC-A------------GTATATGGTGCAAATACAC--AGAC-----ATTGGCGATAATAGTTGAGCAGG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TT--TA-TAC-----------CAAAACGA-AA---ATATACTCCGC---------GTCCAGA---GCAAAACGCTCAAAG--------ACC-AACTCAACCTTATAACCAACAAAACCA-----------------------------------------------------------------------------AAC----------------------------TTTCAATGTAAGGTACCCTCCAGGAACTAGTGCGAAACCAGAACAACTTAATGGAACTTCTACT---CAAACAAAAGTCAACTTAAATGGATCC-CTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TT--TC-TCT------------CAGGTGG------GCA------GC---------ACCTGAA---GCGGAAAACTCTGGG--------CAA-AATGAAAGGCTTGGTGGGTCAAGGATTTTTAT-T-----T-CTGCAGAC---AA--ACACACCCACAAAT------------TGGGAGAGCGCAAATACACA-----------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TT--TC-TAC------------AAGGTGG------GCT------GC---------ACCTGAA---GCGAAAAACTCTGGC--------CAA-AGTGTAAGGCTTGGCGGGTCAAGGACTTTTAT-T-----T-CTGCAGAC---GA--GCACACCCACAG--------------ATAGAGAGAGCCGAAATACACAGAC-----ATTTGCCATAATAGTAGAGC-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CT--TT-TAA-----------CCAGGTGGCCAG--GCA------GC---------ACCCCAA---GCGGAAAACTCTCGCCAGGAGTA-GC-AGCAGAAGGCTTGGCGGGTCAAGGATTTTCCTTTTTCCTT-CTGCAGCAGGCAC--ACACATCCA--CCC------------ACCCGCAGCGCAAATACACACGGAC-----ATTTGCGATATTAG-----------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TT--AC-A-G-----------CCACCTTGTTA---GCA------GC---------ACCTGGA---GCAGAAAACTCTGAG--------CCA-AGAAGAGGGCTTGGTGGGTCAAGGATATTTCT-T-----TTTTGCAGAC---GA--ACACGCCCACAATC------------GGGGAAAAAGCAAATACACGCTGGG-----GCTTGTAACATTGGCGGAGCAGG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TT--GC-A-G-----------CTACCTAGCTA---ACA------GC---------ACCTGGA---ACAGAAAACTCTGAG--------CCA-AGAAGAGGGCTTGGCGGGTCAAGGATATTTCT-T-----TTTTGCAGAA---AA--ACACACCCACAAAC------------GGGTGAAAAGCAAATACACATTGGG-----GCTTGTAATATTGGCGGAGCAGG--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

TG--TC-AGG------------CACGGGG------ACA------GC---------CCCAGAACAGGTACAAAACTCACAG--------A-A-A-----------GTTGGGTCAAGGCTTTTTCA-T-----T-TTGCAGAC---AA--ATACA----CATTG------------AGCGAGAGAGAGAATATAC-CAGAACTCTTATTCGTGATAATCCTAGAGCA----------------------------------------------------------------------------------------------------

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

TC--A----G-----------GCACAGGG-C----ACA------GC---------CCCAGAACAGGTAGAAAACTCACAG--------A-A-A-----------GTTGGGTCAAGGCTTTTTCA-T-----T-TTGCAGAC---AA--ATACA----CAGTG------------AGCGAGAGAGAGAATATAC-CAGAACTCTTATTCGTGATAATCCTAGAGC-----------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

ATGGCATTTG---CACCAA--GGACAGAA------ACA----------------------------------ACGTCGC---------------ACTAAGACTATGCAGCACTAACG------T-T-----C-ATGCAAAA---CT--GTATGCACGAACTG------------ATGCGGAATCAAAACC----------------------------------------------------------------------------------TGCTTATCCAGAAGCTTATCGA----------GAATAAATAATGGCTTCCCTA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
......................................................................................................................................TGCAAAA---CT--GTATGCACGAAC.....................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0
......................................................................................................................................................................................TCAAAACC----------------------------------------------------------------------------------TGCTTATCCAGAA........................................	21	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................CACGAACTG------------ATGCGGAATCAAAACC----------------------------------------------------------------------------------TGC..................................................	28	20	0.05	1	0	0	0	1	0
................CAA--GGACAGAA------ACA----------------------------------ACGTCGC---------------AC.....................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.......................ACAGAA------ACA----------------------------------ACGTCGC---------------ACTAAGACT..............................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..........................................................................GTCGC---------------ACTAAGACTATGCAGCA......................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
................CAA--GGACAGAA------ACA----------------------------------ACGTCGC---------------.......................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................TATCGA----------GAATAAATAATGGC.......	20	20	0.05	1	0	1	0	0	0
...........................AA------ACA----------------------------------ACGTCGC---------------ACTAAGACT..............................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
............................A------ACA----------------------------------ACGTCGC---------------ACTAAGACT..............................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1
........................................................................................................................................CAAAA---CT--GTATGCACGAACTG------------ATGC...................................................................................................................................................	25	20	0.05	1	0	1	0	0	0

droVir3

TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATGTT---TGAAAAAATGATGGA--------TAA-AATACTAGGTCAAATGACACAGAAACTGTTTG-C-----T-CCACAT------------------------------------------------------------------TATGCAAGAAGG------TTTA--------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCA...........................................................................................................................................................................................................................................................................	25	20	9.15	183	0	0	1	0	0	0	1	0	34	0	50	2	8	1	0	0	0	0	0	0	1	0	0	0	10	22	8	0	0	4	0	2	0	0	12	0	24	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACA......................................................................................................................................................................................................................	27	20	6.05	121	0	0	8	0	2	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	14	27	30	0	3	0	3	3	0	10	2	4	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATG.........................................................................................................................................................................................................................................................................	27	20	5.70	114	1	0	12	0	0	0	0	0	1	0	1	1	2	2	0	0	0	0	0	0	0	0	0	0	4	11	18	20	0	4	1	2	2	0	27	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACAC.....................................................................................................................................................................................................................	28	20	5.45	109	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	18	23	17	0	10	0	6	3	0	7	9	6	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACACA....................................................................................................................................................................................................................	29	20	5.40	108	0	0	6	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	5	12	32	12	2	13	3	3	3	0	6	0	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------G........................................................................................................................................................................................................................................................................................	21	20	3.35	67	0	0	0	0	1	0	0	0	16	0	9	0	1	0	0	0	0	0	0	0	0	0	0	0	3	5	4	13	1	6	0	1	1	0	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATG.........................................................................................................................................................................................................................	24	20	3.15	63	0	0	8	0	3	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	2	5	11	17	8	0	2	0	0	1	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGA........................................................................................................................................................................................................................	25	20	2.90	58	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	16	12	5	4	0	2	2	0	3	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------..............................................................................................................................................................................................................................................................................	22	20	2.85	57	0	0	5	0	0	0	0	0	6	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	2	7	2	15	2	4	1	0	0	0	4	1	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TC............................................................................................................................................................................................................................................................................	24	20	2.55	51	1	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	9	2	8	3	3	0	1	1	0	6	1	5	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------..............................................................................................................................................................................................................................................................................	23	20	1.90	38	0	0	13	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	0	11	0	0	0	1	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGAC.......................................................................................................................................................................................................................	26	20	1.85	37	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	5	9	9	0	0	0	0	1	0	4	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------G........................................................................................................................................................................................................................................................................................	22	20	1.35	27	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	4	0	9	1	0	1	0	0	3	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCAT..........................................................................................................................................................................................................................................................................	26	20	1.25	25	0	0	0	0	1	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	5	6	0	0	0	1	1	0	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCA...........................................................................................................................................................................................................................................................................	26	20	1.10	22	0	0	7	0	2	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	1	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ATGACACAGAAACTGTTTG-C-----T-C...............................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................ACTAGGTCAAATGACACAGAAA................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAAT..........................................................................................................................................................................................................................	23	20	1.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	10	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------T.............................................................................................................................................................................................................................................................................	23	20	1.00	20	0	0	0	0	0	0	2	0	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	4	0	1	0	0	0	0	1	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------.........................................................................................................................................................................................................................................................................................	21	20	0.95	19	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	8	2	0	1	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TCA...........................................................................................................................................................................................................................................................................	23	20	0.90	18	0	0	0	0	0	0	0	0	1	0	4	0	5	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------.........................................................................................................................................................................................................................................................................................	20	20	0.85	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	4	2	2	0	1	1	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TC............................................................................................................................................................................................................................................................................	25	20	0.65	13	0	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATG.........................................................................................................................................................................................................................................................................	28	20	0.60	12	0	0	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TCAT..........................................................................................................................................................................................................................................................................	24	20	0.55	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	4	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCAT..........................................................................................................................................................................................................................................................................	27	20	0.55	11	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
TG--CGATAG-----------TGACAAGG-CT---AG................................................................................................................................................................................................................................................................................................	20	20	0.40	8	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATT.........................................................................................................................................................................................................................................................................	27	20	0.35	7	0	0	1	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCAA..........................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TCATGT........................................................................................................................................................................................................................................................................	26	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TGACAAGG-CT---AGA------GG---------TCA...........................................................................................................................................................................................................................................................................	18	20	0.25	5	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCA.............................................................................................................................................................................................................................	20	20	0.25	5	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATC.........................................................................................................................................................................................................................................................................	27	20	0.25	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAA...........................................................................................................................................................................................................................	22	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TCATG.........................................................................................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACAT.....................................................................................................................................................................................................................	28	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TC............................................................................................................................................................................................................................................................................	22	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAA............................................................................................................................................................................................................................	21	20	0.20	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTC..............................................................................................................................................................................................................................	19	20	0.20	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TT............................................................................................................................................................................................................................................................................	24	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......ATAG-----------TGACAAGG-CT---AGA------GG---------TCATGT........................................................................................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AG................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATGT........................................................................................................................................................................................................................................................................	28	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATA.........................................................................................................................................................................................................................................................................	27	20	0.20	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------..............................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATGGA--------TAA-AATACTAGGTCAAATG.........................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGAT.......................................................................................................................................................................................................................	26	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACAG.....................................................................................................................................................................................................................	28	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACATG....................................................................................................................................................................................................................	29	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GATGGA--------TAA-AATACTAGGTCAAAT..........................................................................................................................................................................................................................	24	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......ATAG-----------TGACAAGG-CT---AGA------GG---------TCATG.........................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGG........................................................................................................................................................................................................................	25	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCAAA.........................................................................................................................................................................................................................................................................	27	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TCAA..........................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACAAT....................................................................................................................................................................................................................	29	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................AAATGATGGA--------TAA-AATACTAGGT...............................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................AATACTAGGTCAAATGACACA....................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATGGA--------TAA-AATACTAGGTCA.............................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCTA..........................................................................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................CACAT------------------------------------------------------------------TATGCAAGAAGG------T.....................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................C-----T-CCACAT------------------------------------------------------------------TATGCAAGAAGG------......................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ATGATGGA--------TAA-AATACTAGGTCAAATG.........................................................................................................................................................................................................................	27	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATGGA--------TAA-AATACTAGGTCAAAT..........................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................C-----T-CCACAT------------------------------------------------------------------TATGCAAGAAGG------T.....................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCT...........................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACACAG...................................................................................................................................................................................................................	30	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
.....................TGACAAGG-CT---AGA------GG---------TCATGT........................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......ATAG-----------TGACAAGG-CT---AGA------GG---------TCA...........................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---A.................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AACTGTTTG-C-----T-CCACAT------------------------------------------------------------------TATGCA..................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TAG-----------TGACAAGG-CT---AGA------GG---------TCA...........................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATTC........................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATA.........................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CGATAG-----------TGACAAGG-CT---AGA------GG---------TC............................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................TAA-AATACTAGGTCAAATGACA......................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................AATACTAGGTCAAATGACACAG...................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------T.............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CGATAG-----------TGACAAGG-CT---AGA------GG---------..............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAG...........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................GACAAGG-CT---AGA------GG---------TCATG.........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................A--------TAA-AATACTAGGTCAAATGACAC.....................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TCATA.........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AAAAATGATGGA--------TAA-AATACTAGGTCA.............................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATG.........................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAAGG-CT---AGA------GG---------TCATGTT---TGAAAAAAT...........................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................AGG-CT---AGA------GG---------TCATGTT---TGAAAAT.............................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACATT....................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TA............................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................AATGATGGA--------TAA-AATACTAGGTCAAATG.........................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TCT...........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................GAAAAAATGATGGA--------TAA-AATACT...................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................CCACAT------------------------------------------------------------------TATGCAAGAAGG------T.....................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TCATC.........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TGGA--------TAA-AATACTAGGTCAAATGACACAGA..................................................................................................................................................................................................................	30	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACTT.....................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATA.........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................AA-AATACTAGGTCAAATGACACAGA..................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATAT........................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GATGGA--------TAA-AATACTAGGTCAAATGACAC.....................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAAGG-CT---AGA------GG---------TCATGTT---TGA.................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ATGATGGA--------TAA-AATACTAGGTCAA............................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATTTA.......................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCATC...........................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATT.........................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TCATGG........................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................CTGTTTG-C-----T-CCACAT------------------------------------------------------------------TATGCAAGA...............................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCAA..........................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......ATAG-----------TGACAAGG-CT---AGA------GG---------TCAA..........................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....CGATAG-----------TGACAAGG-CT---AGA------GG---------TCATA.........................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GATGGA--------TAA-AATACTAGGTCAAATG.........................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGT...............................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCAAC.........................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCAAT.........................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCTAT.........................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................ATGTT---TGAAAAAATGATGGA--------T............................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................AAATGATGGA--------TAA-AATACTAGGTCAT............................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GA---------..............................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATGGA--------TAA-AATACTAGGTCAAA...........................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................TGATGGA--------TAA-AATACTAGGT...............................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GT---------..............................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---A.................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCTAC.........................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................AAAATGATGGA--------TAA-AATACTAGGT...............................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACACAGA..................................................................................................................................................................................................................	31	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........G-----------TGACAAGG-CT---AGA------GG---------TCA...........................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................C-----T-CCACAT------------------------------------------------------------------TATGCAAGAAGG------TTT...................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................ACTGTTTG-C-----T-CCACAT------------------------------------------------------------------TATGCAAGAA..............................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GATGGA--------TAA-AATACTAGGTCAAATT.........................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---..................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................G-C-----T-CCACAT------------------------------------------------------------------TATGCAAGAAGG------T.....................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TACTAGGTCAAATGACACA....................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................CATGTT---TGAAAAAATGATGGA--------TAA-AA.......................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGAA.......................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GATAG-----------TGACAAGG-CT---AGA------GG---------TCATT.........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TG--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCAGA.........................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................TGGA--------TAA-AATACTAGGTCAAATGACAC.....................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................GATGGA--------TAA-AATACTAGGTCAAA...........................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................ATGATGGA--------TAA-AATACTAGGTCA.............................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGATTA.....................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGACC......................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........G-----------TGACAAGG-CT---AGA------GG---------TCATGTT---T...................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CAAGG-CT---AGA------GG---------TCATGTT---TGAA................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................A--------TAA-AATACTAGGTCAAATGA........................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGTA.......................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.G--CGATAG-----------TGACAAGG-CT---AGA------GG---------TCC...........................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................AAATGATGGA--------TAA-AATACTAGGTCAAA...........................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................AAATGATGGA--------TAA-AATACTAGGTCAA............................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................ATGGA--------TAA-AATACTAGGTCAAATGATT......................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TG--AT-AAT------------GATGTTA----------------------------------------------------------------------------------------------------------G----------------------------------------------------------------------------------------------------------------------------------------------------------TGAACAAGTTATACAAGTAGATC----------TT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

dse_821

scaffold_13:586876-587026 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-31.7	-31.7	-31.5