dse_82

CAATGGAATACCAACTCCGGAGTGCCGAAAATTCATCCCAAGGTATGGTTTAGATAACTCGAATATCACATCTTCAGTGTTCGATATCTGGTGAGATATTCACGTTGTCTAAACCATGGTTTGTTTGAAAACTACTCAGATCATATCACATACCAACAAGAAAC *********************************...((((.(((((((((((((((..(((((((.((((.................)))).)))))))..))))))))))))))).)))).....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	V115 head	V114 embryo	M054 female body
...........................................................................................TGAGATATTCACGTTGTCTAAA...................................................	22	0	1	107.00	107	96	2	6	3
...........................................................................................TGAGATATTCACGTTGTCT......................................................	19	0	1	82.00	82	15	51	14	2
...........................................................................................TGAGATATTCACGTTGTCTA.....................................................	20	0	1	37.00	37	36	1	0	0
...........................................................................................TGAGATATTCACGTTGTCTAA....................................................	21	0	1	33.00	33	30	2	0	1
..................................................TAGATAACTCGAATATCACATC............................................................................................	22	0	1	8.00	8	6	1	0	1
...........................................................................................TGAGATATTCGCGTTGTCT......................................................	19	1	1	8.00	8	0	8	0	0
...........................................................................................TGAGATATTCACGTTGTCTAAAA..................................................	23	1	1	5.00	5	3	1	0	1
..................................................TAGATAACTCGAATATCACAT.............................................................................................	21	0	1	3.00	3	2	0	1	0
..................................................TAGATAACTCGAATATCACA..............................................................................................	20	0	1	3.00	3	1	1	0	1
...........................................................................................TGAGATATTCACTTTGTCT......................................................	19	1	1	2.00	2	1	1	0	0
...........................................................................................TGAGATATTCACGTTGTCTAT....................................................	21	1	1	2.00	2	2	0	0	0
...........................................................................................TGAGATATTCACGTTGTCCA.....................................................	20	1	1	1.00	1	1	0	0	0
............................................................................................GAGATATTCACGTTGTCTAAA...................................................	21	0	1	1.00	1	0	0	0	1
...........................................................................................TGGGATATTCACGTTGTCT......................................................	19	1	1	1.00	1	0	1	0	0
...........................................................................................TGAGATATTCACGTTGTCGA.....................................................	20	1	1	1.00	1	1	0	0	0
...........................................................................................TGAGGTATTCACGTTGTCTA.....................................................	20	1	1	1.00	1	1	0	0	0
...........................................................................................TGAGATATTCACGTTGTCCAAA...................................................	22	1	1	1.00	1	1	0	0	0
............................................................................................GAGATATTCACGTTGTCTA.....................................................	19	0	1	1.00	1	0	0	0	1
...........................................................................................TGGGATATTCACGTTGTCTAAA...................................................	22	1	1	1.00	1	1	0	0	0
...........................................................................................TGAGATAATCACGCTGTCT......................................................	19	2	1	1.00	1	0	1	0	0
...........................................................................................TGAGATATTCACGTTGTCTTT....................................................	21	2	1	1.00	1	1	0	0	0
...........................................................................................TGAGATATTCACGTTGTCTAAT...................................................	22	1	1	1.00	1	1	0	0	0
...........................................................................................TGAGATATTCACGTTGTTGAAG...................................................	22	3	2	0.50	1	1	0	0	0
............................................................................................GAGATATTCACGTTGTTGAA....................................................	20	2	3	0.33	1	1	0	0	0

Species	Coordinate	ID	Type	Alignment
droSec2	scaffold_8:1735346-1735509 +	dse_82	confident	CA----------ATGGA--------------A------------------------TAC---------------------------------------------------------------------------------C-----------------------------------AACTCCGGAG---------TGCCGAAAATTCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATCTTC-A--G--TGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTGTT--TGAAA------------------A-CTACTCAGATCATATCACATACCAACAAGAAA----C
droSim2	x:18342644-18342809 +	dsi-mir-977	Known_mirbase	CA----------ATGGA--------------A------------------------TAC---------------------------------------------------------------------------------C-----------------------------------AACTCCGGAG---------TGCCGAAAATGCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATTTTC-A--G--TGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTTTGAAA------------------A-CTACTCAGATCATATCATATGCCAACAAGAAA----C
dm3	chrX:19453036-19453191 +	dme-mir-977	Known_mirbase	CC----------GGGGA--------------A------------------------TCC---------------------------------------------------------------------------------C--------------AACACAA----CGAATCA---------------------------------ACAAACAAGGTATGCTTTAGATAACTCGAATATC-AC--ATCTTC-A--G--TGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTGTA--CGAAAC-----------------TACAACTAAGATT---TCATATAGCAACAAAAAA----C
droEre2	scaffold_4690:9689020-9689202 +	der_172	confident	GA----------TCGGG--------------A------------------------TCC---------------------------------------------------------------------------------C--------------GG-A---TTCG-GAGTCAACAAACTCTTGTCAAACAAACGAG--CAGAATTCAACCCAAGGTATGGCCTAGATAACTCGGGTATC-AC--ATCTTT-A-TG--CATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTA--AGAAATAACGCCTTAACTCGGTCTGCAGCTCAA-----------------------------
droYak3	X:11885610-11885801 -	dya_61	confident	CG----------GTTCC--------------T-----------------------ATTC---------------------------------------------CTATTCCGATTCCG----------------------------------------A---TTCG-GAATCAACCAAGTGCGGAC---------AGCTCAGAGTTCACCCCAAGGTATGGCCTAGATAACACGGGTATC-AC--ATCTTT-A-TG--CATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTGTA--AGGAAA-----------------T-GCACTCTGCTCATCAGTTAAACTACTAAGA------T
droEug1	scf7180000409230:879528-879662 -			TA----------TCTTT--------------A------------------------TAT---------------------------------------------CCATATCCATGTCCAGTGGAAATCTACAGGCC--------------------------------------------------------------------ACCAACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGC--ATTT------GCATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGAATTCAAGCCTTG------------------------------------------------------------------
droBia1	scf7180000302069:1150869-1151018 -			CG----------GTGGG--------------ATCCCCAACGTCGCAGTGGGTCCTA----------------------------------------------TG---TTCCAGTACTA----------------------------------------G---TCCA-GACCT--------------------------ACCCAATTCACACCAAGGCCTGGCCTCGATCACGCGGGTATC-GC--ATCT------G--CAACTGATATCTGATGAGATA-TTCACGTCTTCGAAACCAAGCCTTG------------------------------------------------------------------
droTak1	scf7180000415169:844679-844820 -			CA----------TAAGG-TG---------AGAT----------------------------------------------------------------------------------------------CTAATGGGTATCGTATTGTCTAATTATTGAAT-------------------------------------CTTGCTAGTTAACCCCAAGGTCTGGCCTCGATCACGCGGATATC-GC--ATCT------G--CAATTGATATCTGGTGAGATA-TTCACGTCGTCGAAACCATGCCTTG------------------------------------------------------------------
droEle1	scf7180000490751:1118883-1119001 +			AGACCGAC-AGATCGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCC----------------------ATCCATTCCCCTCCAAGGTATGGACTCGATCACGCGAGTATC-GC--ACCTTC-C-TG--CAATCGATAATCGGTGAGATA-TTCACGTCGTCGAATCCATGTCTTG------------------------------------------------------------------
droRho1	scf7180000761121:189929-190092 -			CA----------CCAGA-TC---------CCAA----------------------------------------------------------------------------------------------ATCTTAGATCCCGACCCATCCACTGCCAGCAT-------------------------------------C-ATCCATTCCACACCAAGGTCTGGCCTCGATCACGCGAGTATC-GC--ACCTTC-C-TG--CAATCGATATTCGGTGAGATA-TTCACGTCGTCGAAGCCGTGCCTTGGT--CAGAG------------------T-TTGGCTAAAT--------------------------C
droFic1	scf7180000454073:1734011-1734162 +			CA----------TTTTT--------------T------------------------TCT---------------------------------------------------------------------------------A-----------------------------------AGTGCCTAAT---------TCCCGCAAGTCCAATCCAACATCCGATTTCGACCACGTGGGTATC-ACTCACCTTTCCGCT--CATTTGATATCGGGTGAGATA-TTCACGTCGTTGAATCCGTGTCTTGGA--AAGGAG-----------------T-----TTATGTTATATAATA------------------
droKik1	scf7180000302517:1183795-1183942 +			TAACCAGCTAAACAGCTACCCATCTACTCAGCT----------------------------------------------------------------------------------------------CCTCTGGGAGTCGA--------------GGCTC---------------T----------------------AGATGCAAACCTCCATGGCACGGTCTGGATTACGAGAATATC-GC--ACCTTT-GACG--CCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAGTCCGTG-----------------------------------------------------------------------
droAna3	scaffold_13417:2467412-2467582 -	dan_36	confident	AG----------TCCTA--------------C------------------------CCC----------------------------------------------CACACC-------------------------------------------------AG----C----GAGGC----------------------ACACGCGTACCGCCGAGGTTCGGCCTCGATCACGAGAACGTC-GC--ATCTTA-G-TT--ACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCGGC--TTGGCC-----------------ACCAATCGCAAGCATACCTAGTACCGGAAGTACATATCT
droBip1	scf7180000395874:39824-39936 -			CA----------CACCA--------------G--------------------------------------------------------------------------------------------------------------------------------------C----TACCC----------------------AAACGCATACCGCTGAGGTCCGGCCTCGATCACGAGAACGTC-GC--ATCTTA-G-TT--ACGTTTTCATATGATGAGATA-TTCACGTCGTCGAAACCGTGCCTCG------------------------------------------------------------------
droVir3	scaffold_13042:906586-906728 -	dvi-mir-977	Known_mirbase	AC----------A-GGA--------------A------------------------TAGCAACGGAAACAGGAACCGGAACAGAAACAGGAAAAAGAAATTGTG--------------------------------------------------------------------TTCC----------------------CCCTGG-----CC--CAGCCCAGTTGCGATTGCGCGGACATC-TC--ATCGTA-TAAA--CATTCGATAACCAACGAGATA-TTCACGTTATCGAGAC---------------------------------------------------------------------------
droMoj3	scaffold_6328:2900856-2900966 -	dmo_55	confident	AAACGAAATGAA----------------------------------------------C---------------------------------------------------------------------------------C-----------------------------------AG-TTCGTTG---------T--------TCTGGCC--CAGCCCGGTTCCGATTGCGCGGACATC-TC--ATCGTC-TGAC--CATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCG-----------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

CA----------ATGGA--------------A------------------------TAC---------------------------------------------------------------------------------C-----------------------------------AACTCCGGAG---------TGCCGAAAATTCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATCTTC-A--G--TGTTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGGTTTGTT--TGAAA------------------A-CTACTCAGATCATATCACATACCAACAAGAAA----C	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA............................................................................	22	1	107.00	107	3	96	6	2
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT...............................................................................	19	1	82.00	82	2	15	14	51
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA..............................................................................	20	1	37.00	37	0	36	0	1
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA.............................................................................	21	1	33.00	33	1	30	0	2
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATC...........................................................................................................................	22	1	8.00	8	1	6	0	1
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA...........................................................................	23	1	5.00	5	1	3	0	1
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--AT............................................................................................................................	21	1	3.00	3	0	2	1	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--A.............................................................................................................................	20	1	3.00	3	1	1	0	1
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT.............................................................................	21	1	2.00	2	0	2	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAA............................................................................	21	1	1.00	1	1	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA..............................................................................	19	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT.............................................................................	21	1	1.00	1	0	1	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT............................................................................	22	1	1.00	1	0	1	0	0

droSim2

CA----------ATGGA--------------A------------------------TAC---------------------------------------------------------------------------------C-----------------------------------AACTCCGGAG---------TGCCGAAAATGCATCCCAAGGTATGGTTTAGATAACTCGAATATC-AC--ATTTTC-A--G--TGTTCGATATCTGATGAGATA-TTCACGTTGTCTAAACCATGGTTTGTTTTTGAAA------------------A-CTACTCAGATCATATCATATGCCAACAAGAAA----C	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA.............................................................................	21	1	2553.00	2553	0	2	0	1	1954	31	1	2	2	2	1	0	0	557	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA..............................................................................	20	1	577.00	577	0	1	0	0	392	8	1	4	2	1	1	0	0	167	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTC................................................................................	18	1	295.00	295	0	0	0	0	291	3	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAA.............................................................................	22	1	275.00	275	0	13	0	0	181	11	2	0	0	3	1	0	0	64	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT...............................................................................	19	1	218.00	218	0	0	0	0	168	4	2	0	0	0	2	0	0	42	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA............................................................................	22	1	217.00	217	0	7	0	1	23	0	28	14	18	23	1	0	0	102	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC...........................................................................	23	1	183.00	183	0	0	0	0	179	4	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTA..............................................................................	21	1	110.00	110	1	17	0	0	62	2	2	0	0	0	0	0	0	26	0	0	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATT...........................................................................................................................	22	1	54.00	54	0	16	0	0	32	0	0	1	0	1	0	0	0	4	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAA............................................................................	23	1	40.00	40	0	2	0	0	1	0	7	2	7	1	1	0	0	19	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA...........................................................................	23	1	33.00	33	0	0	0	0	0	0	2	3	14	6	0	0	0	8	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCT...............................................................................	20	1	32.00	32	0	7	0	0	20	0	0	1	0	0	0	0	0	4	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTC................................................................................	19	1	30.00	30	0	0	0	0	29	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--AT............................................................................................................................	21	1	28.00	28	0	0	0	0	25	0	0	0	0	0	0	0	0	3	0	0	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--A.............................................................................................................................	20	1	28.00	28	0	0	0	0	27	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATTTT.........................................................................................................................	24	1	24.00	24	0	18	0	0	0	0	0	0	1	1	0	0	0	4	0	0	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATTT..........................................................................................................................	23	1	17.00	17	0	3	0	0	10	1	0	1	0	0	0	0	0	2	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAA.............................................................................	20	1	16.00	16	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGT.................................................................................	18	1	15.00	15	0	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATTTTC-.......................................................................................................................	25	1	13.00	13	0	4	0	0	7	0	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--..............................................................................................................................	19	1	13.00	13	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT.............................................................................	21	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTA..............................................................................	19	1	6.00	6	0	0	0	1	4	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAAC...........................................................................	24	1	5.00	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTT..............................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-A.................................................................................................................................	18	1	4.00	4	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCA...............................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAAA..........................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTT..............................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCTAAAC...........................................................................	22	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTGTCT...............................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAT............................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
............................................................................................................................................................................................................TGCATCCCAAGGTATGGTT....................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCC...............................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCTAAAA...........................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAACC..........................................................................	24	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTTT.............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................TTC-A--G--TGTTCGATATCTGA...................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............TGGA--------------A------------------------TAC---------------------------------------------------------------------------------C-----------------------------------AACTCCGGAG---------TG..............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAACA...........................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAG............................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAG.............................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTT...................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TGGTTTGTTTTTGAAA------------------A-CTACTCAGA............................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTCG...............................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTGTA................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

dm3

CC----------GGGGA--------------A------------------------TCC---------------------------------------------------------------------------------C--------------AACACAA----CGAATCA---------------------------------ACAAACAAGGTATGCTTTAGATAACTCGAATATC-AC--ATCTTC-A--G--TGTTCGAAATCTGATGAGATA-TTCACGTTGTCTAAATCATGTTTTGTA--CGAAAC-----------------TACAACTAAGATT---TCATATAGCAACAAAAAA----C	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT...............................................................................	19	1	58925.00	58925	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	54	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	5	0	1	1	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	9	2	2	5	0	2	43	2	4	111	0	0	2	1	0	10	0	0	3	14	5	14	1	15	3	1	0	22	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	8	0	2	0	1	0	5	0	0	0	0	0	0	1	306	2	359	0	0	0	0	175	0	362	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	11	2	1	0	0	0	0	0	0	0	0	3	0	0	2	0	0	0	0	1	0	0	1	5	0	1	0	0	90	5	0	39	4	6	121	24	21	1	5	0	3	1	0	8	135	5	7521	7	1	14	1	1	1	4	7	1	1	0	0	0	0	0	47	2	0	7	3	20	14	14	0	1	16	0	20	2	0	0	0	0	51	0	49	53	2	0	0	0	0	9	1	3099	1	0	1	0	0	0	202	0	17	7	74	3	59	35	10	1	51	45328	13	68	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA............................................................................	22	1	19962.00	19962	0	0	0	0	0	7	0	0	2	3	6	53	1	0	0	0	0	0	0	0	0	0	0	2811	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	6	0	14	22	0	1	3	20	5	34	1	3	373	6	4	323	5	0	20	49	0	30	4	2	20	6	17	23	1	321	21	4	8	130	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	0	4	0	2	1	40	2	2	0	2	0	5	2	0	0	0	0	0	3	522	0	874	0	0	0	0	440	0	828	4	0	0	0	0	0	1	3	0	0	0	0	0	4	0	0	0	7	25	0	0	0	2	0	5	9	3	1	50	2	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	31	0	0	8	0	0	2	0	0	0	0	0	0	2	0	1	19	4	1611	1	1	1	1	2	2	1	8	2	3	1	4	3	3	0	17	3	0	2	0	1	1	3	33	2	69	0	1	0	1	4	0	0	132	0	88	117	0	0	0	5	0	2	6	9387	5	0	0	0	5	1	36	0	16	1	71	1	2	3	0	0	0	958	0	25	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA.............................................................................	21	1	15814.00	15814	0	0	0	0	1	20	0	0	1	1	4	129	6	0	0	0	0	0	0	0	0	0	0	3191	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	49	3	1	8	0	0	17	42	7	148	7	3	1504	10	14	1008	8	3	62	104	31	186	1	0	96	46	102	134	3	746	59	13	17	541	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	2	0	0	1	11	0	2	0	1	0	1	0	0	0	0	0	0	3	530	7	628	0	0	0	0	451	0	544	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	12	0	0	0	0	0	1	1	0	0	12	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	26	0	0	6	0	0	1	0	0	0	0	0	2	0	0	3	32	0	1107	1	0	3	0	1	0	0	4	0	0	0	3	0	1	0	8	1	0	1	0	0	0	2	2	6	42	0	1	0	0	0	0	0	72	0	42	64	0	0	0	1	0	2	4	3221	3	1	0	0	0	0	14	0	5	0	43	0	1	1	0	0	0	525	0	6	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA..............................................................................	20	1	8506.00	8506	0	0	0	0	0	2	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	1772	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	0	1	0	13	6	1	14	1	0	138	3	4	189	0	0	0	6	14	29	1	0	14	17	10	26	1	52	8	1	4	86	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	2	0	1	0	14	0	2	0	1	0	1	0	0	0	0	0	0	2	305	0	312	0	0	0	0	266	0	206	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	10	0	0	6	0	0	2	0	2	0	1	0	0	0	0	0	19	1	1317	2	0	2	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	2	0	23	0	2	0	0	0	0	0	38	0	32	38	0	1	0	0	0	0	0	2720	3	0	0	0	1	0	17	0	4	1	23	0	2	1	0	0	0	659	2	8	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATC...........................................................................................................................	22	1	1778.00	1778	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	102	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	29	0	0	7	0	0	3	2	1	1	0	0	1	1	6	7	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	8	0	2	0	0	0	3	0	0	0	0	1	0	0	217	0	87	0	0	0	0	131	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	0	0	2	7	4	17	9	4	2	51	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	4	1	435	1	0	0	0	1	0	1	6	0	0	0	1	0	1	0	6	0	0	2	0	0	0	0	2	0	3	0	0	0	0	0	0	0	6	0	1	3	0	0	0	0	0	0	0	270	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	235	1	6	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--AT............................................................................................................................	21	1	658.00	658	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	16	0	0	0	0	0	4	0	0	2	4	4	2	0	9	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	80	1	10	0	0	0	0	43	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	3	1	6	4	0	0	8	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	173	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	61	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	110	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAA...........................................................................	23	1	463.00	463	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	5	0	0	5	0	0	1	0	0	3	0	0	0	0	0	0	0	7	3	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	22	0	0	0	0	7	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	4	0	0	1	0	0	0	0	244	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	31	0	2	0
........................................................................................................................................................................................................................................................TTC-A--G--TGTTCGAAATCTGA...................................................................................................	19	1	454.00	454	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	19	0	1	9	0	0	0	0	0	0	0	0	1	0	0	3	0	10	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	157	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	1	4	0	0	0	0	0	0	0	3	0	1	4	0	0	0	0	0	0	0	113	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	101	0	0	0
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..................................................................................................................................................................................................................................................................................AGATA-TTCACGTTGTCTAA.............................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAG...........................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TAGATAACTCGAATATC-AC--ATT...........................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTC-A--G--TGTTCGAAATCTGATC.................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................TA-TTCACGTTGTCTAAATC..........................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTCC.............................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTATT............................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GA----------TCGGG--------------A------------------------TCC---------------------------------------------------------------------------------C--------------GG-A---TTCG-GAGTCAACAAACTCTTGTCAAACAAACGAG--CAGAATTCAACCCAAGGTATGGCCTAGATAACTCGGGTATC-AC--ATCTTT-A-TG--CATTCGATATCTGGTGAGATAATTCACGTTGTCTAAACCATGTTTTGTA--AGAAATAACGCCTTAACTCGGTCTGCAGCTCAA-----------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................................................................................................................................TAGATAACTCGGGTATC-AC--AT............................................................................................................................	21	1	8.00	8	0	0	2	0	5	1	0
...............................................................................................................................................................................................................................TAGATAACTCGGGTATC-AC--A.............................................................................................................................	20	1	7.00	7	0	0	0	0	6	1	0
................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCTA..............................................................................	21	1	6.00	6	0	0	0	0	5	1	0
................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCT...............................................................................	20	1	4.00	4	0	0	0	0	2	2	0
............................................................................................................................................................................................................TTCAACCCAAGGTATGGCC....................................................................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0
...............................................................................................................................................................................................................................TAGATAACTCGGGTATC-AC--ATCT..........................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................ATTCAACCCAAGGTATGGCC....................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................TAGATAACTCGGGTATC-AC--ATC...........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTC................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGTCTAAA............................................................................	23	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................TGAGATAATTCACGTTGT.................................................................................	18	1	1.00	1	0	0	0	0	0	1	0

droYak3

CG----------GTTCC--------------T-----------------------ATTC---------------------------------------------CTATTCCGATTCCG----------------------------------------A---TTCG-GAATCAACCAAGTGCGGAC---------AGCTCAGAGTTCACCCCAAGGTATGGCCTAGATAACACGGGTATC-AC--ATCTTT-A-TG--CATTCGATATCTGGTGAGATA-TTCACGTTGTCTAAACCATGTTTTGTA--AGGAAA-----------------T-GCACTCTGCTCATCAGTTAAACTACTAAGA------T	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAA............................................................................	22	1	50.00	50	1	4	0	0	0	1	44	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCT...............................................................................	19	1	24.00	24	0	1	0	0	2	6	15	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTA..............................................................................	20	1	17.00	17	0	1	0	0	0	0	16	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAA.............................................................................	21	1	16.00	16	0	0	0	0	0	1	15	0	0	0	0
...............................................................................................................................................................................................................................TAGATAACACGGGTATC-AC--AT............................................................................................................................	21	1	5.00	5	0	1	0	0	0	0	3	0	0	1	0
...............................................................................................................................................................................................................................TAGATAACACGGGTATC-AC--ATC...........................................................................................................................	22	1	5.00	5	1	2	1	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................CTAGATAACACGGGTATC-AC--AT............................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................TAGATAACACGGGTATC-AC--A.............................................................................................................................	20	1	2.00	2	0	0	0	0	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................CTAGATAACACGGGTATC-AC--A.............................................................................................................................	21	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAAAC...........................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAT.............................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTGTCTAC.............................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

TA----------TCTTT--------------A------------------------TAT---------------------------------------------CCATATCCATGTCCAGTGGAAATCTACAGGCC--------------------------------------------------------------------ACCAACCCAAGGTCTGGTCTCGATCACGCGGGTATCTGC--ATTT------GCATTTTGTATATCTGGTGAGATA-TTCACGTAGTCGAATTCAAGCCTTG------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CG----------GTGGG--------------ATCCCCAACGTCGCAGTGGGTCCTA----------------------------------------------TG---TTCCAGTACTA----------------------------------------G---TCCA-GACCT--------------------------ACCCAATTCACACCAAGGCCTGGCCTCGATCACGCGGGTATC-GC--ATCT------G--CAACTGATATCTGATGAGATA-TTCACGTCTTCGAAACCAAGCCTTG------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CA----------TAAGG-TG---------AGAT----------------------------------------------------------------------------------------------CTAATGGGTATCGTATTGTCTAATTATTGAAT-------------------------------------CTTGCTAGTTAACCCCAAGGTCTGGCCTCGATCACGCGGATATC-GC--ATCT------G--CAATTGATATCTGGTGAGATA-TTCACGTCGTCGAAACCATGCCTTG------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGACCGAC-AGATCGTG-----------------------------------------------------------------------------------------------------------------------------------------------------------ATCC----------------------ATCCATTCCCCTCCAAGGTATGGACTCGATCACGCGAGTATC-GC--ACCTTC-C-TG--CAATCGATAATCGGTGAGATA-TTCACGTCGTCGAATCCATGTCTTG------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CA----------CCAGA-TC---------CCAA----------------------------------------------------------------------------------------------ATCTTAGATCCCGACCCATCCACTGCCAGCAT-------------------------------------C-ATCCATTCCACACCAAGGTCTGGCCTCGATCACGCGAGTATC-GC--ACCTTC-C-TG--CAATCGATATTCGGTGAGATA-TTCACGTCGTCGAAGCCGTGCCTTGGT--CAGAG------------------T-TTGGCTAAAT--------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CA----------TTTTT--------------T------------------------TCT---------------------------------------------------------------------------------A-----------------------------------AGTGCCTAAT---------TCCCGCAAGTCCAATCCAACATCCGATTTCGACCACGTGGGTATC-ACTCACCTTTCCGCT--CATTTGATATCGGGTGAGATA-TTCACGTCGTTGAATCCGTGTCTTGGA--AAGGAG-----------------T-----TTATGTTATATAATA------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TAACCAGCTAAACAGCTACCCATCTACTCAGCT----------------------------------------------------------------------------------------------CCTCTGGGAGTCGA--------------GGCTC---------------T----------------------AGATGCAAACCTCCATGGCACGGTCTGGATTACGAGAATATC-GC--ACCTTT-GACG--CCTTTGATATCTGGTGAGATA-TTCACGTGGTCGAGTCCGTG-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AG----------TCCTA--------------C------------------------CCC----------------------------------------------CACACC-------------------------------------------------AG----C----GAGGC----------------------ACACGCGTACCGCCGAGGTTCGGCCTCGATCACGAGAACGTC-GC--ATCTTA-G-TT--ACATTTCCATATGATGAGATA-TTCACGTCGTCGAAACCGTGTCTCGGC--TTGGCC-----------------ACCAATCGCAAGCATACCTAGTACCGGAAGTACATATCT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAA.............................................................................	21	1	226.00	226	29	0	0	16	173	8
...............................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--ATCT..........................................................................................................................	23	1	179.00	179	15	2	0	9	144	9
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGA..............................................................................	20	1	136.00	136	33	0	0	9	91	3
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAA............................................................................	22	1	134.00	134	27	0	0	4	102	1
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAA.............................................................................	22	1	49.00	49	2	0	0	3	44	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGA..............................................................................	21	1	33.00	33	3	0	0	0	29	1
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAT............................................................................	22	1	32.00	32	3	0	0	1	25	3
...............................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--AT............................................................................................................................	21	1	30.00	30	3	1	0	5	21	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAA............................................................................	23	1	23.00	23	3	0	0	2	16	2
...............................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--ATC...........................................................................................................................	22	1	20.00	20	5	1	0	0	14	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCG...............................................................................	19	1	12.00	12	2	0	0	2	8	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAT............................................................................	23	1	11.00	11	1	0	0	2	7	1
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCG...............................................................................	20	1	10.00	10	0	0	0	0	10	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAATT...........................................................................	23	1	8.00	8	0	0	0	0	8	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGAAA............................................................................	21	1	6.00	6	6	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAAT...........................................................................	23	1	5.00	5	0	0	0	0	4	1
...............................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--A.............................................................................................................................	20	1	5.00	5	0	0	0	0	5	0
..................................................................................................................................................................................................................................................................................AGATA-TTCACGTCGTCGAA.............................................................................	19	1	3.00	3	3	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAT.............................................................................	21	1	3.00	3	0	0	0	1	2	0
...............................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--ATCTTT-.......................................................................................................................	25	1	3.00	3	0	0	0	1	1	1
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGAA.............................................................................	20	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAATT...........................................................................	24	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--AA............................................................................................................................	21	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--ATCTT.........................................................................................................................	24	1	2.00	2	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGATT............................................................................	22	1	2.00	2	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAATTT..........................................................................	24	1	2.00	2	0	0	0	1	1	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAC.............................................................................	21	1	2.00	2	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGT..............................................................................	20	1	2.00	2	0	0	0	1	1	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAG.............................................................................	21	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGT..............................................................................	21	1	1.00	1	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAACT..........................................................................	25	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGATT............................................................................	23	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAATTT..........................................................................	25	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--ATCTC.........................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAATT..........................................................................	24	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................................................................................CTCGATCACGAGAACGTC-GC--ATCT..........................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAAAT...........................................................................	24	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGTTT............................................................................	22	2	1.00	2	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAAG............................................................................	22	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAG.............................................................................	22	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTCGTCGAGTT...........................................................................	23	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................TCGATCACGAGAACGTC-GC--T.............................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTCGTCGAT.............................................................................	22	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTCGTCGT..............................................................................	19	2	0.50	1	1	0	0	0	0	0

droBip1

CA----------CACCA--------------G--------------------------------------------------------------------------------------------------------------------------------------C----TACCC----------------------AAACGCATACCGCTGAGGTCCGGCCTCGATCACGAGAACGTC-GC--ATCTTA-G-TT--ACGTTTTCATATGATGAGATA-TTCACGTCGTCGAAACCGTGCCTCG------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droVir3

AC----------A-GGA--------------A------------------------TAGCAACGGAAACAGGAACCGGAACAGAAACAGGAAAAAGAAATTGTG--------------------------------------------------------------------TTCC----------------------CCCTGG-----CC--CAGCCCAGTTGCGATTGCGCGGACATC-TC--ATCGTA-TAAA--CATTCGATAACCAACGAGATA-TTCACGTTATCGAGAC---------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGA............................................................................	22	1	17315.00	17315	15	0	29	0	2	464	7	86	0	198	1	0	0	0	3	0	1	1	7	0	451	1	0	0	1	2	9	7	5559	3811	1447	4311	2	271	0	2	0	2	4	541	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	1	0	55	0	7	2	0	0	0	8	1	1	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAG.............................................................................	21	1	15065.00	15065	1	0	19	0	8	646	3	65	0	64	0	0	0	0	3	0	0	0	4	0	621	1	0	1	6	3	4	4	3767	3152	1149	3995	3	481	0	0	1	1	0	1031	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	23	0	1	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATC...........................................................................................................................	22	1	957.00	957	4	0	7	0	0	22	1	2	0	6	0	0	0	0	0	0	0	0	0	0	54	0	0	0	0	0	0	0	221	208	117	234	0	43	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--AT............................................................................................................................	21	1	582.00	582	0	0	0	0	0	6	1	1	0	0	0	0	0	0	0	0	0	0	0	0	27	0	0	0	0	0	0	0	140	130	57	179	0	21	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGT............................................................................	22	1	582.00	582	0	0	0	0	0	42	0	12	0	9	0	0	0	0	0	0	0	0	0	0	52	0	0	0	0	0	0	0	107	95	41	137	0	30	0	0	0	0	0	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGA..............................................................................	20	1	542.00	542	1	0	1	0	0	23	1	3	0	5	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	127	125	53	126	0	21	1	0	0	0	0	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCG...............................................................................	19	1	453.00	453	0	0	2	0	0	41	0	3	0	8	0	0	0	0	0	0	0	0	0	0	38	0	0	0	0	0	1	0	70	76	24	80	0	50	0	0	0	0	0	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGA............................................................................	21	1	140.00	140	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	37	35	19	34	0	3	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--A.............................................................................................................................	20	1	124.00	124	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	33	30	8	31	0	7	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAT---------------------------------------------------------------------------	23	1	115.00	115	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	33	20	7	38	0	1	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAG.............................................................................	20	1	111.00	111	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	29	25	12	22	0	6	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAA---------------------------------------------------------------------------	23	1	102.00	102	1	0	1	0	0	5	0	1	0	3	0	0	0	0	0	1	0	0	1	0	2	0	0	0	0	0	0	0	24	16	9	25	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	1	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCG..........................................................................................................................	23	1	100.00	100	1	0	0	0	0	4	0	1	0	7	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	18	19	6	22	0	5	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGC............................................................................	22	1	57.00	57	0	0	0	0	0	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	8	4	3	4	0	4	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAC.............................................................................	21	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	7	4	4	6	0	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCGTA-.......................................................................................................................	25	1	32.00	32	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	8	3	6	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATC................................................................................	18	1	25.00	25	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	6	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGAGA............................................................................	23	1	18.00	18	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	2	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATT...........................................................................................................................	22	1	17.00	17	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	3	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGAG.............................................................................	22	1	17.00	17	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAT.............................................................................	21	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	1	2	0	3	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCT..........................................................................................................................	23	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAC---------------------------------------------------------------------------	23	1	12.00	12	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	3	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAA.............................................................................	21	1	11.00	11	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	2	3	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCC...............................................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGG............................................................................	22	1	8.00	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGTC.............................................................................	21	1	8.00	8	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GATA-TTCACGTTATCGAGA............................................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGAG---------------------------------------------------------------------------	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGAGTT---------------------------------------------------------------------------	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAGA............................................................................	20	1	4.00	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--..............................................................................................................................	19	1	4.00	4	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................ATA-TTCACGTTATCGAGA............................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGC..............................................................................	20	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCG...............................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCC..........................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCGTC-.......................................................................................................................	25	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GATTGCGCGGACATC-TC--ATC...........................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................GATTGCGCGGACATC-TC--AT............................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TT--C.............................................................................................................................	20	1	3.00	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................ACGAGATA-TTCACGTTATCGA..............................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--C.............................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGT............................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATTT..........................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGACC............................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCGT.........................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATCA..........................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGA..............................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--ATA...........................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................CGATTGCGCGGACATC-TC--AT............................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGCGATTGCGCGGACATC-TC--A.............................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGCT.............................................................................	21	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................GATA-TTCACGTTATCGAG.............................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAT.............................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCAG..............................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGATC............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TT--..............................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GCGATTGCGCGGACATC-TC--AA............................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCGATG............................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TTGCGATTGCGCGGACATC-TC--..............................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CGAGATA-TTCACGTTATCCC..............................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGAT---------------------------------------------------------------------------	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................C----------------------CCCTGG-----CC--CAGCCCAGTT....................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCG...............................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................TTGCGATTGCGCGGACATC-TC--A.............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGCGATTGCGCGGACATC-TC--ATC...........................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAG.............................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TGCGATTGCGCGGACATC-TC--AT............................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAACGAAATGAA----------------------------------------------C---------------------------------------------------------------------------------C-----------------------------------AG-TTCGTTG---------T--------TCTGGCC--CAGCCCGGTTCCGATTGCGCGGACATC-TC--ATCGTC-TGAC--CATTCGATAACCGATGAGATA-TTCACGTTATCGAGACTGCG-----------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGA............................................................................	22	1	473.00	473	61	1	7	16	6	382
...............................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATC...........................................................................................................................	22	1	99.00	99	14	0	2	0	2	81
...............................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--AT............................................................................................................................	21	1	46.00	46	7	0	0	2	1	36
...............................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--A.............................................................................................................................	20	1	34.00	34	4	0	2	0	0	28
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAG.............................................................................	21	1	22.00	22	7	0	0	0	4	11
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGAA...........................................................................	23	1	6.00	6	1	0	0	1	0	4
...............................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATCG..........................................................................................................................	23	1	6.00	6	1	0	0	0	0	5
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGT............................................................................	22	1	6.00	6	1	0	0	0	0	5
.................................................................................................................................................................................................................................................................................GAGATA-TTCACGTTATCGAGA............................................................................	21	1	4.00	4	4	0	0	0	0	0
...............................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATT...........................................................................................................................	22	1	4.00	4	0	0	0	0	0	4
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGAT...........................................................................	23	1	3.00	3	1	0	0	0	0	2
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGA..............................................................................	20	1	3.00	3	0	0	0	0	0	3
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGA............................................................................	23	1	2.00	2	1	0	0	0	0	1
...............................................................................................................................................................................................................................CCGATTGCGCGGACATC-TT--C.............................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGAT...........................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGG............................................................................	22	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATCC..........................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................AGATA-TTCACGTTATCGAGA............................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--AG............................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATG...........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................................................TGAGATA-TTCACGTTATCGAGC............................................................................	22	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................ATGAGATA-TTCACGTTATCGAGT............................................................................	23	1	1.00	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................CCGATTGCGCGGACATC-TC--ATCT..........................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

dse_82

scaffold_8:1735396-1735459 +

Known Ortholog

Testes-restricted

5pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-34.3	-34.1	-33.8