dse_752

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ATCCCCAGCAGCAACAGCAGCAGCAACACTCGCCCCACTCCCTGGTGCGGGTGAAAAAGGAACCGAATGTTGGTCAGCGGCACTTGTCGCCGCATCACCAGCAACAGTCGCCGCTCCTGCAGCACCACCAACAGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCATCTGCATCAGCAACAGCAACAGCAGCAGCACCACCAGCAGCAACCCCAGGCACTGGCCACTGATGCATCCGGCTTCCCTGGC ************************************************************************************************************************************************....................((..((((....((....))....))))..))***************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo	V113 male body	V115 head	M054 female body
...........................................................................................................TCGCCTCACCTGGAGCACCA............................................................................................................................	20	3	11	0.64	7	5	2	0	0
.................................................................................................................................................................CAGAAGAGTCTGCATCAGCAACA...................................................................	23	3	2	0.50	1	1	0	0	0
..CCCCAGCAGCAACAGCAGCA.....................................................................................................................................................................................................................................	20	0	7	0.14	1	1	0	0	0
..................................................................................................................................................CAACAACAACAGCAGCAGCAG....................................................................................	21	0	20	0.10	2	0	0	2	0
..................................................................................................................................................CAACAACAACAGCAGCAGCAGC...................................................................................	22	0	20	0.10	2	2	0	0	0
.............................................................................................................GCCTCACCTGGAGCACCACC..........................................................................................................................	20	3	18	0.06	1	1	0	0	0
............................................................................................................CGCCGCTCCCCCAGCACC.............................................................................................................................	18	2	19	0.05	1	0	0	0	1
.........................................................................................................................................CAGCAGCAGCAACAACAAC...............................................................................................	19	0	20	0.05	1	1	0	0	0
..................................................................................................................................................CAACAACAACAGCAGCAGCAGCA..................................................................................	23	0	20	0.05	1	1	0	0	0
...................................................................................................................................................AACAACAACAGCAGCAGCAGC...................................................................................	21	0	20	0.05	1	1	0	0	0
.............................................................................................................GCCTCTCCTGGAGCACCA............................................................................................................................	18	2	20	0.05	1	1	0	0	0
....................................................................................................................................................................................AACAGCAACAGCAGCAGC.....................................................	18	0	20	0.05	1	1	0	0	0

TAGGGGTCGTCGTTGTCGTCGTCGTTGTGAGCGGGGTGAGGGACCACGCCCACTTTTTCCTTGGCTTACAACCAGTCGCCGTGAACAGCGGCGTAGTGGTCGTTGTCAGCGGCGAGGACGTCGTGGTGGTTGTCGTCGTCGTCGTCGTTGTTGTTGTCGTCGTCGTCGTAGACGTAGTCGTTGTCGTTGTCGTCGTCGTGGTGGTCGTCGTTGGGGTCCGTGACCGGTGACTACGTAGGCCGAAGGGACCG ***************************************************....................((..((((....((....))....))))..))************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo	M054 female body	V113 male body
..........................................................................................................................................................................................ATGTCGTCGTCGTGATGGTCGTC..........................................	23	2	4	0.25	1	1	0	0
...................................................................................................................GTACGTCGTGGTGGTTGT......................................................................................................................	18	1	5	0.20	1	0	1	0
......................................................................................................................................................................................................TGGGGGTCATCCTTGGGGT..................................	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSec2	scaffold_10:1678630-1678880 +	dse_752	ATCCCC-AGCAGCAACAGCAGCAGCAAC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAAAAGGAACCGAAT---GTTGGT----------------------CAGCGGCACTTGTCGCCGCATCACCAGCAACA----------------------GTCGCCGCTCCTGCAGCACCACCAACAGCAGCAGCAGCAG-------------------------CAAC---------------AACAACAGCAGCAGCAGCATCTGCATCA------GC------AACAGC---------AACAGCAG------------CAGCAC------CAC---CAGCA---GC-------------A------------------------ACCCCAGGCACTG------------------------GCCACTGATGCATCC--GGCTTCCCTGGC
droSim2	x:1735098-1735347 +		ATCCCC-AGCAGCAACAGCAGCAGCAAC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAAAAGGAACCGAAT---GTTGGT----------------------CAGCGGCACTTGTCGCCGCATCACCAGCAACA----------------------GTCGCCGCTCCTGCAGCACCACCAACAGCAGCAGCAGCAG-------------------------CAAC---------------AACAACAGCAGCAGCAGCATCTGCATCA------GC------AACAGC---------AACAGCAG------------CAGCAC------CAC---CAGCA---GC-------------A------------------------ACCGCAGGCACTG------------------------GCC-TTGATGCATCC--GGCTTCCCTGGC
dm3	chrX:1893163-1893409 +		ATCCCC-AGCAGCAACAGCAGCAGCAAC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAAAAGGAACCGAAT---GTTGGT----------------------CAGCGGCACTTATCGCCGCATCACCAACAACA----------------------GTCGCCACTCCTGCAGCACCACCAACAGCAGCAGCAGCAG-------------------------CAAC---------------AACAAC---AGCAACAGCATCTGCATCA------GC------AACAGC---------AACAGCAG------------CAGCAT------CAC---CAGCA---GC-------------A------------------------GCCCCAGGCACTG------------------------GCC-CTGATGCATCC--GGCTTCCCTGGC
droEre2	scaffold_4644:1863673-1863916 +		ATCCCC-AGCAGCAGCAGCAGCAGCAGC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAAAAGGAACCGAAT---GTGGGT----------------------CAGCGGCACTTGTCGCCGCACCACCAGCAACA----------------------GTCGCCGCTCCTGCAGCACCACCAACAGCAGCAGCAGCAG-------------------------CAGC---------------AAC------AGCAGCAGCATCTACACCA------GC------AACAGC---------AGCAGCAG------------CAGCAC------CAC---CAGCA---GC-------------A------------------------GCCCCAGGCACTG------------------------GCC-CTCATGCATCC--CGCTTCCCTGGC
droYak3	X:6857740-6858007 -		ACCTGCGGCCAGCAACAATAGCAGTAGC------------------AGCAGCACTACCGCCCGGCA-----------GCAGCACGAGC--GTGGTA-----TACGGC--TATCCTGGCTACCGGCGACACTCCCAGCATCAACAGCAACA----------------------ACAGCAACAACAGCAACAACAACAACAGCAGCAGCAACAG-------------------------CAGC---------------AGCAACAGCAGCCACCGCATCCGCATCTTGTCCAGC------AGCAGC------AGCAACAGTCG------------CCACATCG---CCAG---CAGCA---GC-------------A------------------------GCAGCTCTACCAG------------------------GCC-ACTGTGCTGCC--ACCTCCATTGCA
droEug1	scf7180000409182:436522-436762 +		ATCCCC-AGCAGCAACAGCAGCAGCAGC------------------ACTCGCCCCACTCCTTGGTGCGGGTGAAGAAGGAACCGAAT---GTGGGC----------------------CAGCGTCACCTGTCGCCGCATCATCAGCAACA----------------------GTCGCCGCACCTGCAGCACCACCAGCAGCAACAGCAGCAG-------------------------C---------------------------AGCAGCAACATTTGCACCA------GC------AACAGC---------AGCAACAG------------CAACAC------CAT---CAGCAGCAGC-------------A------------------------ACCCCAGGCACTT------------------------GCC-CTTATGCATCC--CGCTTCCCTGGC
droBia1	scf7180000301760:4497125-4497365 +		ATCCCC-AGCAGCAACAGCA---GCAAC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAGAAGGAGCCGAAT---GTTGGC----------------------CAGCGGCACCTTTCGCCGCACCATCAGCAGCA----------------------GTCGCCGCACCTGCAGCACCACCAGCAGCAACAGCAGCAG-------------------------C---------------------------AGCAGCAACATCTACACCA------GC------AACAAC------AGCAACAGCAG------------CAGCAACA---CCAC---CAGCA---GC-------------A------------------------GCCGCAGGCCCTG------------------------GCC-CTGATGCATCC--CGCCTCGCTGGC
droTak1	scf7180000415211:49406-49667 -		ATCCCC-AGCAGCAACAGCAACAGCAGCAGCAACAACAGCAGCAACACTCGCCGCACTCCTTGGTGCGCGTGAAGAAGGAACCGAAT---GTGGTT----------------------CAGCGGCATTTGTCGCCCCATCACCAGCAGCA----------------------GTCGCCGCACCTGCAACAGCAACAGCAGCAGCAGCAAC----------------------------------------------------------------ACCTACACCA------GC---AGCA---GCAGCAGCAACACCTACAC---------CAGCAACAC---CACCAGCAGC---AGCAGC-------------A------------------------ACCACAGGCGCTG------------------------GCC-CTCATGCATCC--CGCCTCGTTGGC
droEle1	scf7180000491001:1403842-1404106 +		ATCCGC-AGCAG------------CAAC------------------ATTCGCCTCACTCTTTGGTGAGGGTGAAGAAGGAGCCGAAT---GTTGGT----------------------CAGCGTCACTTGTCGCCGCATCACCCGCAACA----------------------GTCGCCCCACCTGCAGCACCACCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAGC-------------AGC------AACAACAGCAGCAGCAGCATCTACACCA------GC------A---GC---------AACAGCAG------------CAACAC------CAC---CAGC-------------------AACAAC------AGC------AGCAACCGCAAGCTCTG------------------------GCC-CTAATGCATCC--CGCCTCGCTGGC
droRho1	scf7180000777610:26019-26262 -		ATCCGC-AGCAGCA---------GCAGC------------------ACTCGCCCCACTCTTTGGTGCGGGTGAAGAAGGAGCCGAAC---GTGGGC----------------------CAGCGGCACCTGTCGCCGCACCACCCGCAACA----------------------GTCGCCGCACCTGCAGCACCACCAGCAGCAACAGCAGCAG-------------------------CAGC------------------------AGCAGCAGCACCTGCACCAGCAGCAGCAGC---AACAGC---------AGCAGCAG------------CAACAC------CAC---CAGCAGCAAC-------------A------------------------GCCACAGGCCCTG------------------------GCC-CTGATGCACCC--CGCCTCGCTGGC
droFic1	scf7180000454072:3005145-3005403 +		AGCAAC-AGCAGCAGCAGCAGCAGCAAC------------------ACTCGCCGCACTCGCTGGTGCGCGTGAAGAAGGAGCCGAGC---GTGGGT----------------------CAGCGGCACCTCTCGCCGCACCACCAGCAGCAG-------------CAGCAGCAGTCGGCGCACCTGCAGCACCACCACCAGCAGCAGCAGCAG-------------------------C---------------------------AGCAGCAGCACCTCCACCA------GC------AGCACC---------AACAGCAGCAGCAACAC---CTGCAG------CAGCAGC---AGCAGC-------------A------------------------ACCGCAGGCACTC------------------------GCG-CTCATGCACCC--CGCCTCGCTGGC
droKik1	scf7180000302610:158456-158711 +		AGCAGC-AACAGCAGCAGCAGCAGCAAC------------------ACTCGCCGCACTCCTTGGTGCGCGTGAAGAAGGAGCCCAATCAGGTGGGT----------------------CAGCGTCACCTGTCGCCGCATCACCAGCAGCA----------------------TCAGCAACAGCAGCAGCAACATCTCCACCAGCAGCAGCAT-------------------------AATC---------------TTCACCAGCAGCAACACAATCTCCACCA------AC------AGCAGC---------AGCAGCAG------------CATCAA------CAGCAGC---AGCAGC-------------A------------------------GCCCCAGGCCCTG------------------------GCC-CTGATGCATCC--CGCCTCGCTGGC
droAna3	scaffold_13117:805209-805453 -		ACGCCC-AGCAGCAGCAGCAGCCGG-GC------------------GCTGGCTCCGG-CTCCGGATCGGGCGGGCA-------------------G----------------------CAGGCCCACCACCCGTACAACCAGCAGCAGCACCTGCACCACCTGC-AGCAGCTCCAGGCG------------CAGCAGCAGCAGCACCAGCAG-------------------------CAAC---------------AACAACAGCAGCAGCTCCAGGCTCAGCA------GC------A---GC---------AGCATCAC------------CACCAC------CAC---CACC-------------------ATCCGC------TGCA------CC-ACCACATGCACCA-------------------------CC-ACGGAGCAGCC--GGGTACGCCGAG
droBip1	scf7180000395567:7176-7419 -		AACACC-AGCAGCAACAACAGCAGCAAC------------------ATCAGCTGCA-------------------------------------------------------------------------------ACAGCACCAGCAACA----------------------GTTACAACACCAGCAGCAGCAGCAACAGCAACAGCACCTG-------------------------CACCAGCAACAGCTTCAGCCGCACCAGCAGCAAATGCAACACCACCA------GC------AGCAAC---------AACAGCAG------------CAGCAACAGCACCAGCAGC---TGCTGCA-CGAGTCCCAGCAGCAACAGCAGCAGCA---------GTACCACCCACA---------------------------T-CACCTACATCC--GCACAGCCTGCC
dp5	XL_group1a:2562997-2563234 +		CCC--C-ACCAGCAGCAGCAGCAGCAGC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAGAAGGAGCCGAAT---GCGGGAACACACACGGGATC-------ACAGCGGCACCTCTCGCCGCACCATCAGCAGCA----------------------GTCGCCGCACATGCAGCACCACCAGCAGCAGCAGCAGCAA-------------------------C---------------------------AG------------------------------------------------------------------CAGCAC---CACCAGCAGC---AGCAGCAGAGAGAGC----CGCC---------------------ACCGCAGGCGCTG------------------------GCA-CTGATGCATTCGTCGCTCTCCCTGC
droPer2	scaffold_0:634971-635187 +		ATCAGC-AACAGCAACATCAGCAGCAAC------------------AGCAGCAGCAACAGCAGCA-------------------------------------------------------------------GCAGCAACAACAGCAGCA----------------------GCAGCAACAT---------------CAGCAACAGCAACAT-------------------------CAGC------AGCAACAGCAGCAGC---AGCAACAACAGCAGCAGCA------------------GC---------AACATCAG------------CAACAG------CAA---C---A---GC-------------AACAAC------AGC------AGCTGC---AGCCCC--CCCCAAGACCCCCAATGACGC---TCA-GTGACATATTC--AA-CAGCCTGGC
droWil2	scf2_1100000004913:128523-128737 -		AACAGC-AGCAGCAACAACAGCATCAGC------------------AACAGCAACAG---CAGCAACGAATGCAACAGCAACAGCA---------A----------------------CAGCAGCAACAATTGCAGCAACAACAGCAACA----------------------GCAGCAACAACAACAGCAACAACAACAACAGCAGCAACAA-------------------------CAAC---------------AGCAGCAGCAACAACAGCAACAGCAACA------AC------AACAGC---------AGCAGCAA------------CAGCAA------CAA---CAGCA---GC-------------A------------------------GCAGCAGCAACTG-----------------------------------------------------
droVir3	scaffold_12928:2241089-2241307 -		AACTGC-AGCAACAACAGCAGCAGCAAC------------------AGCAGCATCATCAGCAGCTGCAAC---------------------------------------A-------ACAACAGCAGCAGCTGCAGCACCATCAGCAGCA----------------------TCTGCAG---------------------CAACAACAGCAG------CAGCTTCATCAGCAGCTTC----------AGCAGCATCAGCAACAGCAGCATCAGCA---ACAACA------GC---AGCA---GC---------AACAGCAG------------CAACAGCA---ACAG---C----------------------AGCAAC---------ATC---AGCTGCCACAG--------------------------------------------C--CGCCACCAGTGC
droMoj3	scaffold_6496:5256350-5256587 +		AGCAGC-AGCAGCAGCAGCAGCAGCAGC------------------AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG----------------------------------------------CAGCAGCAGCAGCAGCAGCAGCAGCA----------------------GCAGCAG---------------------CAGCAGCAGCAG------CAGCAGCAGCAGCAGCAGC----------AGCAGCAGCAGCAGCAGCAGCAGCAGCA---GCAGCA------GC------AGCAGC---------AGCAGCAG------------CAGCAGCA---GCAG---C----------------------AGCAGC---------AGCAGCAGCAACAGCAGCAGTAG------------------CACTCAGCT-CATATGCATAC--T---------GC
droGri2	scaffold_15203:5574481-5574734 -		AACAAC-AGCAGCAGCAACAGCAGCAAC------------------ATTCGCCGCATGCTCTGATACGCGTCAAAAAGGAGCCCACT---TCAAGTGGCAGCGCTCAACA-------GCAGCGGCATCTGTCACCGCATCATCATCAGCA----------------------GCAACAG---CAGCAGCACCAGCAACATCAACAGCAGCAG-------------------------C---------AGCAACAGCAGCAGCAGCAGCAA------------CA------GC------AACAGC---------AGCAACAC------------CATCAC------CAG---CAACA---GC-------------A------------------------ACAACAGCAACAG------------------------TCG-CTGCTGCATTC--AGCATCGCTG--

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

ATCCCC-AGCAGCAACAGCAGCAGCAAC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAAAAGGAACCGAAT---GTTGGT----------------------CAGCGGCACTTGTCGCCGCATCACCAGCAACA----------------------GTCGCCGCTCCTGCAGCACCACCAACAGCAGCAGCAGCAG-------------------------CAAC---------------AACAACAGCAGCAGCAGCATCTGCATCA------GC------AACAGC---------AACAGCAG------------CAGCAC------CAC---CAGCA---GC-------------A------------------------ACCCCAGGCACTG------------------------GCCACTGATGCATCC--GGCTTCCCTGGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..CCCC-AGCAGCAACAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	1	0
.............................................................................................................................................................................................................................................CAAC---------------AACAACAGCAGCAGCAG................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2
.............................................................................................................................................................................................................................................CAAC---------------AACAACAGCAGCAGCAGC...............................................................................................................................................................................................	22	20	0.10	2	0	0	2	0
...........................................................................................................................................................................................................CAGCAGCAG-------------------------CAAC---------------AACAAC...........................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0
.............................................................................................................................................................................................................................................CAAC---------------AACAACAGCAGCAGCAGCA..............................................................................................................................................................................................	23	20	0.05	1	0	0	1	0
..............................................................................................................................................................................................................................................AAC---------------AACAACAGCAGCAGCAGC...............................................................................................................................................................................................	21	20	0.05	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................AACAGC---------AACAGCAG------------CAGC................................................................................................................................	18	20	0.05	1	0	0	1	0

droSim2

ATCCCC-AGCAGCAACAGCAGCAGCAAC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAAAAGGAACCGAAT---GTTGGT----------------------CAGCGGCACTTGTCGCCGCATCACCAGCAACA----------------------GTCGCCGCTCCTGCAGCACCACCAACAGCAGCAGCAGCAG-------------------------CAAC---------------AACAACAGCAGCAGCAGCATCTGCATCA------GC------AACAGC---------AACAGCAG------------CAGCAC------CAC---CAGCA---GC-------------A------------------------ACCGCAGGCACTG------------------------GCC-TTGATGCATCC--GGCTTCCCTGGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
........GCAGCAACAGCAGCAGCAAC------------------AC.................................................................................................................................................................................................................................................................................................................................................................................................................................	22	9	0.89	8	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................ACAGCAG------------CAGCAC------CA......................................................................................................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAT.............................................................................................................................................................................................	16	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................AACAGC---------AACAGCAG------------CAGCA...............................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................AG-------------------------CAAC---------------AACAACAGCAGCAGCAGC...............................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......AGCAGCAACAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

ATCCCC-AGCAGCAACAGCAGCAGCAAC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAAAAGGAACCGAAT---GTTGGT----------------------CAGCGGCACTTATCGCCGCATCACCAACAACA----------------------GTCGCCACTCCTGCAGCACCACCAACAGCAGCAGCAGCAG-------------------------CAAC---------------AACAAC---AGCAACAGCATCTGCATCA------GC------AACAGC---------AACAGCAG------------CAGCAT------CAC---CAGCA---GC-------------A------------------------GCCCCAGGCACTG------------------------GCC-CTGATGCATCC--GGCTTCCCTGGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................AGCACCACCAACAGCAGCAGCAGCAG-------------------------CA..................................................................................................................................................................................................................................	28	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AGCACCACCAACAGCAGCAGCAGCAG-------------------------CC..................................................................................................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GGCACTTATCGCCGCATCA....................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................AGC---------AACAGCAG------------CAGCAT------CAC---CAGCA---T.........................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GCAAC------------------ACTCGCCCCACTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................CGCCGCATCACCAACAACA----------------------.....................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................TGAAAAAGGAACCGAAT---GTTGGT----------------------CAGC.......................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................AGCAAC------------------ACTCGCCCCACTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........CAGCAACAGCAGCAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........AGCAACAGCAGCAGCAAC------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AGCAGCAG-------------------------CAAC---------------AACAAC---A.......................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CCAACAGCAGCAGCAGCAG-------------------------C...................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CAACAGCAGCAGCAGCAG-------------------------CAA.................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ATCCCC-AGCAGCAGCAGCAGCAGCAGC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAAAAGGAACCGAAT---GTGGGT----------------------CAGCGGCACTTGTCGCCGCACCACCAGCAACA----------------------GTCGCCGCTCCTGCAGCACCACCAACAGCAGCAGCAGCAG-------------------------CAGC---------------AAC------AGCAGCAGCATCTACACCA------GC------AACAGC---------AGCAGCAG------------CAGCAC------CAC---CAGCA---GC-------------A------------------------GCCCCAGGCACTG------------------------GCC-CTCATGCATCC--CGCTTCCCTGGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
ATCCCC-AGCAGCAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................AACAGCAGCAGCAGCAG-------------------------CA..................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	4	0	0	0
...........................................................................................................................................................................................................................................................................................A------GC------AACAGC---------AGCAGCAG------------CAGCAC------CA......................................................................................................................	25	5	0.20	1	0	0	0	0	1	0	0
........................................................................................................................................................................................GCAGCACCACCAACAGCAGCA....................................................................................................................................................................................................................................................................	21	6	0.17	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................A------GC------AACAGC---------AGCAGCAG------------CA..................................................................................................................................	19	20	0.10	2	0	0	0	0	0	2	0
......................................................................................................................................................................................................AGCAGCAGCAGCAG-------------------------CAGC---------------AAC------A.......................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................CAG------------CAGCAC------CAC---CAGCA---GC-------------A------------------------..................................................................	20	20	0.05	1	1	0	0	0	0	0	0
...CCC-AGCAGCAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................GCAGCAGCAGCAG-------------------------CAGC---------------AAC------AGCAGCA.................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................CCAACAGCAGCAGCAGCAG-------------------------CA..................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
..............................................................................................................................................................................................CCACCAACAGCAGCAGCA.................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................C------AACAGC---------AGCAGCAG------------CAGC................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0

droYak3

ACCTGCGGCCAGCAACAATAGCAGTAGC------------------AGCAGCACTACCGCCCGGCA-----------GCAGCACGAGC--GTGGTA-----TACGGC--TATCCTGGCTACCGGCGACACTCCCAGCATCAACAGCAACA----------------------ACAGCAACAACAGCAACAACAACAACAGCAGCAGCAACAG-------------------------CAGC---------------AGCAACAGCAGCCACCGCATCCGCATCTTGTCCAGC------AGCAGC------AGCAACAGTCG------------CCACATCG---CCAG---CAGCA---GC-------------A------------------------GCAGCTCTACCAG------------------------GCC-ACTGTGCTGCC--ACCTCCATTGCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................................................................................................................................CATCTTGTCCAGC------AGCAGC------...........................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CG------------CCACATCG---CCAG---CAGCA---GC-------------A------------------------GCA...............................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCTACCAG------------------------GCC-ACTGTGCTGCC--............	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............AACAATAGCAGTAGC------------------AGCAGCACTAC........................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CGCATCTTGTCCAGC------AGCAGC------AGCAAC.....................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................TCTACCAG------------------------GCC-ACTGTGCTGCC--ACC.........	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................ACCGCCCGGCA-----------GCAGCACGAGC--.......................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................ACTACCGCCCGGCA-----------GCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................CGGCGACACTCCCAGCATCA....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TCCAGC------AGCAGC------AGCAACAGTCG------------CCA.................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GC------AGCAGC------AGCAACAGTCG------------CCACC...............................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TCTTGTCCAGC------AGCAGC------AGCAACAG...................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................CACGAGC--GTGGTA-----TACGGC--....................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
....................................................ACTACCGCCCGGCA-----------GCAGCACG............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................CAGCTCTACCAG------------------------GCC-ACTGTGCTGCC--ACC.........	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......GGCCAGCAACAATAGCAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................A-----TACGGC--TATCCTGGCTACC.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................TATCCTGGCTACCGGCGA..................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AACAG-------------------------CAGC---------------AGCAACAGCAGCCACCGC...............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACAGTCG------------CCACATCG---CCAG---CAGCA---..........................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................GGCGACACTCCCAGCATCAACA.................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................G------------CCACATCG---CCAG---CAGCA---GC-------------A------------------------GCAGC.............................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................ACAACAACAACAGCAGCAGCAACAG-------------------------CA..................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GCAGCAACAG-------------------------CAGC---------------AGCAACAGCAGC.....................................................................................................................................................................................................	26	20	0.10	2	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GCAGCAACAG-------------------------CAGC---------------AGCA.............................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................AACAACAACAACAGCAGCA....................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................AACAACAACAACAGCAGCAGCAAC...............................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................AGCAGCAGCAACAG-------------------------CAGC---------------AGCAACAGC........................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................CAACAACAGCAGCAGCAACAG-------------------------CAG.................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AACAACAGCAGCAGCAACAG-------------------------C...................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ATCCCC-AGCAGCAACAGCAGCAGCAGC------------------ACTCGCCCCACTCCTTGGTGCGGGTGAAGAAGGAACCGAAT---GTGGGC----------------------CAGCGTCACCTGTCGCCGCATCATCAGCAACA----------------------GTCGCCGCACCTGCAGCACCACCAGCAGCAACAGCAGCAG-------------------------C---------------------------AGCAGCAACATTTGCACCA------GC------AACAGC---------AGCAACAG------------CAACAC------CAT---CAGCAGCAGC-------------A------------------------ACCCCAGGCACTT------------------------GCC-CTTATGCATCC--CGCTTCCCTGGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ATCCCC-AGCAGCAACAGCA---GCAAC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAGAAGGAGCCGAAT---GTTGGC----------------------CAGCGGCACCTTTCGCCGCACCATCAGCAGCA----------------------GTCGCCGCACCTGCAGCACCACCAGCAGCAACAGCAGCAG-------------------------C---------------------------AGCAGCAACATCTACACCA------GC------AACAAC------AGCAACAGCAG------------CAGCAACA---CCAC---CAGCA---GC-------------A------------------------GCCGCAGGCCCTG------------------------GCC-CTGATGCATCC--CGCCTCGCTGGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATCCCC-AGCAGCAACAGCAACAGCAGCAGCAACAACAGCAGCAACACTCGCCGCACTCCTTGGTGCGCGTGAAGAAGGAACCGAAT---GTGGTT----------------------CAGCGGCATTTGTCGCCCCATCACCAGCAGCA----------------------GTCGCCGCACCTGCAACAGCAACAGCAGCAGCAGCAAC----------------------------------------------------------------ACCTACACCA------GC---AGCA---GCAGCAGCAACACCTACAC---------CAGCAACAC---CACCAGCAGC---AGCAGC-------------A------------------------ACCACAGGCGCTG------------------------GCC-CTCATGCATCC--CGCCTCGTTGGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ATCCGC-AGCAG------------CAAC------------------ATTCGCCTCACTCTTTGGTGAGGGTGAAGAAGGAGCCGAAT---GTTGGT----------------------CAGCGTCACTTGTCGCCGCATCACCCGCAACA----------------------GTCGCCCCACCTGCAGCACCACCAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGCAGC-------------AGC------AACAACAGCAGCAGCAGCATCTACACCA------GC------A---GC---------AACAGCAG------------CAACAC------CAC---CAGC-------------------AACAAC------AGC------AGCAACCGCAAGCTCTG------------------------GCC-CTAATGCATCC--CGCCTCGCTGGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATCCGC-AGCAGCA---------GCAGC------------------ACTCGCCCCACTCTTTGGTGCGGGTGAAGAAGGAGCCGAAC---GTGGGC----------------------CAGCGGCACCTGTCGCCGCACCACCCGCAACA----------------------GTCGCCGCACCTGCAGCACCACCAGCAGCAACAGCAGCAG-------------------------CAGC------------------------AGCAGCAGCACCTGCACCAGCAGCAGCAGC---AACAGC---------AGCAGCAG------------CAACAC------CAC---CAGCAGCAAC-------------A------------------------GCCACAGGCCCTG------------------------GCC-CTGATGCACCC--CGCCTCGCTGGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCAAC-AGCAGCAGCAGCAGCAGCAAC------------------ACTCGCCGCACTCGCTGGTGCGCGTGAAGAAGGAGCCGAGC---GTGGGT----------------------CAGCGGCACCTCTCGCCGCACCACCAGCAGCAG-------------CAGCAGCAGTCGGCGCACCTGCAGCACCACCACCAGCAGCAGCAGCAG-------------------------C---------------------------AGCAGCAGCACCTCCACCA------GC------AGCACC---------AACAGCAGCAGCAACAC---CTGCAG------CAGCAGC---AGCAGC-------------A------------------------ACCGCAGGCACTC------------------------GCG-CTCATGCACCC--CGCCTCGCTGGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCAGC-AACAGCAGCAGCAGCAGCAAC------------------ACTCGCCGCACTCCTTGGTGCGCGTGAAGAAGGAGCCCAATCAGGTGGGT----------------------CAGCGTCACCTGTCGCCGCATCACCAGCAGCA----------------------TCAGCAACAGCAGCAGCAACATCTCCACCAGCAGCAGCAT-------------------------AATC---------------TTCACCAGCAGCAACACAATCTCCACCA------AC------AGCAGC---------AGCAGCAG------------CATCAA------CAGCAGC---AGCAGC-------------A------------------------GCCCCAGGCCCTG------------------------GCC-CTGATGCATCC--CGCCTCGCTGGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ACGCCC-AGCAGCAGCAGCAGCCGG-GC------------------GCTGGCTCCGG-CTCCGGATCGGGCGGGCA-------------------G----------------------CAGGCCCACCACCCGTACAACCAGCAGCAGCACCTGCACCACCTGC-AGCAGCTCCAGGCG------------CAGCAGCAGCAGCACCAGCAG-------------------------CAAC---------------AACAACAGCAGCAGCTCCAGGCTCAGCA------GC------A---GC---------AGCATCAC------------CACCAC------CAC---CACC-------------------ATCCGC------TGCA------CC-ACCACATGCACCA-------------------------CC-ACGGAGCAGCC--GGGTACGCCGAG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................G-------------------------CAAC---------------AACAACAGCAGCAGCTCC...............................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.......AGCAGCAGCAGCAGCCGG-GC------------------...................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
...............................................................................................................................................................................................................AGCAG-------------------------CAAC---------------AACAACAGCAGCAGC..................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0

droBip1

AACACC-AGCAGCAACAACAGCAGCAAC------------------ATCAGCTGCA-------------------------------------------------------------------------------ACAGCACCAGCAACA----------------------GTTACAACACCAGCAGCAGCAGCAACAGCAACAGCACCTG-------------------------CACCAGCAACAGCTTCAGCCGCACCAGCAGCAAATGCAACACCACCA------GC------AGCAAC---------AACAGCAG------------CAGCAACAGCACCAGCAGC---TGCTGCA-CGAGTCCCAGCAGCAACAGCAGCAGCA---------GTACCACCCACA---------------------------T-CACCTACATCC--GCACAGCCTGCC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CCC--C-ACCAGCAGCAGCAGCAGCAGC------------------ACTCGCCCCACTCCCTGGTGCGGGTGAAGAAGGAGCCGAAT---GCGGGAACACACACGGGATC-------ACAGCGGCACCTCTCGCCGCACCATCAGCAGCA----------------------GTCGCCGCACATGCAGCACCACCAGCAGCAGCAGCAGCAA-------------------------C---------------------------AG------------------------------------------------------------------CAGCAC---CACCAGCAGC---AGCAGCAGAGAGAGC----CGCC---------------------ACCGCAGGCGCTG------------------------GCA-CTGATGCATTCGTCGCTCTCCCTGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................................................................................................................................................................................................................................................................................................................................AC---CACCAGCAGC---AGCAGCAG......................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.....................................................................................................................................................................................................CAGCAGCAGCAGCAA-------------------------C---------------------------AG------------------------------------------------------------------C...................................................................................................................................	19	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........GCAGCAGCAGCAGCAGC------------------ACTC...............................................................................................................................................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................CACCACCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GCAC---CACCAGCAGC---AGCAGCAG......................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................GCAC---CACCAGCAGC---AGCAGCA.......................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................CACCAGCAGCAGCAGCAGC...............................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CAGCACCACCAGCAGCAGCAG...................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................CAGCAC---CACCAGCAGC---AGCAG.........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................CAC---CACCAGCAGC---AGCAGCA.......................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................C---CACCAGCAGC---AGCAGCAG......................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CCACCAGCAGCAGCAGCAG................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................GCAGCAGCAA-------------------------C---------------------------AG------------------------------------------------------------------CAGCAC---C..........................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................AG------------------------------------------------------------------CAGCAC---CACCAGCAGC---AG............................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................GCACCACCAGCAGCAGCAGCA.................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................AGCAGCAGCAGCAGCAA-------------------------C---------------------------AG------------------------------------------------------------------C...................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

ATCAGC-AACAGCAACATCAGCAGCAAC------------------AGCAGCAGCAACAGCAGCA-------------------------------------------------------------------GCAGCAACAACAGCAGCA----------------------GCAGCAACAT---------------CAGCAACAGCAACAT-------------------------CAGC------AGCAACAGCAGCAGC---AGCAACAACAGCAGCAGCA------------------GC---------AACATCAG------------CAACAG------CAA---C---A---GC-------------AACAAC------AGC------AGCTGC---AGCCCC--CCCCAAGACCCCCAATGACGC---TCA-GTGACATATTC--AA-CAGCCTGGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................AT-------------------------CAGC------AGCAACAGCAGCAGC---AGC.....................................................................................................................................................................................................	24	9	0.11	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................AGC------AGCAACAGCAGCAGC---AGC.....................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
........................................................................................................................................CAACAACAGCAGCA----------------------GCAGCAA..............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................GCAACAACAGCAGCAGCA------------------GC---------AACA....................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................AACAGCAGCAGC---AGCAACA.................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
..........................AC------------------AGCAGCAGCAACAGCAGCA-------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................GCAACAACAGCAGCA----------------------GCAGC................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................GCAGCAGC---AGCAACAACAGCAGCA........................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
...........................................................GCAGCA-------------------------------------------------------------------GCAGCAACAACAGCAGCA----------------------.....................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
...................................................CAGCAACAGCAGCA-------------------------------------------------------------------GCAGCAACA....................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................CAACAACAGCAGCAGCA------------------GC---------AA......................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
....................GCAGCAAC------------------AGCAGCAGCAACAGCAGCA-------------------------------------------------------------------.............................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................GCAACAACAGCAGCA----------------------GCAGCAACA............................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
......................................................................................................................................AGCAACAACAGCAGCA----------------------GCAGC................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................AGCAACAGCAGCAGC---AGCAA...................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................AGCAACAACAGCAGCAGCA------------------GC---------........................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0

droWil2

AACAGC-AGCAGCAACAACAGCATCAGC------------------AACAGCAACAG---CAGCAACGAATGCAACAGCAACAGCA---------A----------------------CAGCAGCAACAATTGCAGCAACAACAGCAACA----------------------GCAGCAACAACAACAGCAACAACAACAACAGCAGCAACAA-------------------------CAAC---------------AGCAGCAGCAACAACAGCAACAGCAACA------AC------AACAGC---------AGCAGCAA------------CAGCAA------CAA---CAGCA---GC-------------A------------------------GCAGCAGCAACTG-----------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................AACAGCA---------A----------------------CAGCAGCAACA................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	3	0
.............................................................................................................................AACAATTGCAGCAACAACAG................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0
......................................................................................................................................AGCAACAACAGCAACA----------------------GCAGCAA..............................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0
...............................................................CAACGAATGCAACAGCAACAGCA---------A----------------------C..........................................................................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0
.......................TCAGC------------------AACAGCAACAG---CAGCAACGAA...........................................................................................................................................................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	1	0
..CAGC-AGCAGCAACAACAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
...................................................................................................................................................................................................................A-------------------------CAAC---------------AGCAGCAGCAACAAC..................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	2
...................................................................................................................................TGCAGCAACAACAGCAACA----------------------GCAG.................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
......................................................................................................................................AGCAACAACAGCAACA----------------------GCAG.................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0
...............................................................................................................................................................................................................................................................................AGCAACAGCAACA------AC------AACAGC---------AGCA....................................................................................................................................................	25	20	0.10	2	0	2	0	0	0
.........................AGC------------------AACAGCAACAG---CAGCAACG.............................................................................................................................................................................................................................................................................................................................................................................................................	22	11	0.09	1	0	0	0	1	0
...............CAACAGCATCAGC------------------AACAGCAACAG---CAG..................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
............CAACAACAGCATCAGC------------------AACAGCAACAG---.....................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0
............CAACAACAGCATCAGC------------------AACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0
............................................................................AGCAACAGCA---------A----------------------CAGCAGCAACAATT.............................................................................................................................................................................................................................................................................................................................................	25	16	0.06	1	0	0	0	1	0
...................AGCATCAGC------------------AACAGCAACAG---CAG..................................................................................................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
...............CAACAGCATCAGC------------------AACAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	1	0
......................................................................TGCAACAGCAACAGCA---------A----------------------CAGCAGC....................................................................................................................................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0
......................ATCAGC------------------AACAGCAACAG---CAGCAAC..............................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
..................................................................................AGCA---------A----------------------CAGCAGCAACAATTG............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.........................................................................AACAGCAACAGCA---------A----------------------CAGCAGC....................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
...................................................................................................................................TGCAGCAACAACAGCAACA----------------------GCAGC................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.............................................................................................................................AACAATTGCAGCAACAACAGCAA.............................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.............................................................................................................................AACAATTGCAGCAACAACAGCA..............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................GCAGCAA------------CAGCAA------CAA---CAGCA---GC-------------A------------------------GC................................................................	26	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................ACAACAGCAGCAACAA-------------------------CAAC---------------A................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................ACA------AC------AACAGC---------AGCAGCAA------------CA..................................................................................................................................	21	20	0.05	1	0	0	0	1	0
..............................................................................................................................................................................AGCAACAACAACAGCAACAA...............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
....................................................................................................................................GCAGCAACAACAGCAACA----------------------G....................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
.................................................................................................................................................CAACA----------------------GCAGCAACAACAACAGC....................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................A------AC------AACAGC---------AGCAGCAA------------CAGCA...............................................................................................................................	22	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................AA-------------------------CAAC---------------AGCAGCAGCAACAA...................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................CAA-------------------------CAAC---------------AGCAGCAGCAACAACA.................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................AACAGCAACA------AC------AACAGC---------AGCA....................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................C---------AGCAGCAA------------CAGCAA------CAA---CAGCA---G.........................................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................ACA------AC------AACAGC---------AGCAGCAA------------....................................................................................................................................	19	20	0.05	1	0	0	0	1	0
..................................................................................................................................TTGCAGCAACAACAGCAACA----------------------GCAGC................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................CAACAACAGCAACAACAACA..........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................ACAACAACAACAGCAGCAA................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.............................................................................................................................AACAATTGCAGCAACAACAGCAAC............................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................AAC---------------AGCAGCAGCAACAACAGCAACA...........................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0
...................................................................................................................................TGCAGCAACAACAGCAACA----------------------GCA..................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................CAGC---------AGCAGCAA------------CAGCAA------CAA---..................................................................................................................	21	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................ACA------AC------AACAGC---------AGCAGCAA------------CAG.................................................................................................................................	22	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................................................................AACA------AC------AACAGC---------AGCAGCAA------------....................................................................................................................................	20	20	0.05	1	0	0	0	0	1
..................................................................................................................................TTGCAGCAACAACAGCAACA----------------------GCAG.................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................AACAGCAACA------AC------AACAGC---------AGCAGCA.................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.........................AGC------------------AACAGCAACAG---CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
................................................................................................................................AATTGCAGCAACAACAGCAACA----------------------GC...................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
........................................................................CAACAGCAACAGCA---------A----------------------CAGCAG.....................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
............................................................................................................................CAACAATTGCAGCAACAACAGCAA.............................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.............................................................................................................................AACAATTGCAGCAACAACAGC...............................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................CAACAA-------------------------CAAC---------------AGCAGCAGC........................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................CAA------------CAGCAA------CAA---CAGCA---GC-------------A------------------------GCAG..............................................................	24	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................GCAACAGCAACA------AC------AACAGC---------........................................................................................................................................................	20	20	0.05	1	0	1	0	0	0

droVir3

AACTGC-AGCAACAACAGCAGCAGCAAC------------------AGCAGCATCATCAGCAGCTGCAAC---------------------------------------A-------ACAACAGCAGCAGCTGCAGCACCATCAGCAGCA----------------------TCTGCAG---------------------CAACAACAGCAG------CAGCTTCATCAGCAGCTTC----------AGCAGCATCAGCAACAGCAGCATCAGCA---ACAACA------GC---AGCA---GC---------AACAGCAG------------CAACAGCA---ACAG---C----------------------AGCAAC---------ATC---AGCTGCCACAG--------------------------------------------C--CGCCACCAGTGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................ACAGCAGCATCAGCA---ACAAC......................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TGCAGCACCATCAGCAGCA----------------------TCTGCAG---------------------C........................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................CAGCAGCTTC----------AGCAGCATCAGCAAC...........................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................ACCATCAGCAGCA----------------------TCTGCAG---------------------CAACAACA.................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TGCAAC---------------------------------------A-------ACAACAGCAGCAGCT.............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................G---------------------CAACAACAGCAG------CAGCTTCATC.............................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGCTTCATCAGCAGCTTC----------AGCAGCATCAG...............................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CTGCCACAG--------------------------------------------C--CGCCACCAGT..	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CTTCATCAGCAGCTTC----------AGCAGCATCAGC..............................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GCAGCACCATCAGCAGCA----------------------TCT..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGCTTCATCAGCAGCTTC----------AGCAGC....................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................CAGCTTCATCAGCAGCTTC----------AGCA......................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................GCAGCATCATCAGCAGCT................................................................................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................AGCATCAGCAACAGCAGCATC..................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GCAGCATCAGCA---ACAACA------GC---..........................................................................................................................................................................	20	5	0.40	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GCAGCATCAGCAACAGCAGCAT...................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................GCAAC---------------------------------------A-------ACAACAGCAGCAGCTG............................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AGCAGCATCAGCA---ACAACA------GC---A.........................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................AAC---------------------------------------A-------ACAACAGCAGCAGCTGCAGC........................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................ATCAGCA---ACAACA------GC---AGCA---GC---------........................................................................................................................................................	21	6	0.17	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GCAACAGCAGCATCAGCA---ACA........................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................CAGCAACAGCAGCATCAGCA---ACA........................................................................................................................................................................................	23	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................AGCAACAGCAGCATCAGCA---AC.........................................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................CATCAGCA---ACAACA------GC---AGCA---G..................................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................AGCAAC------------------AGCAGCATCATCA......................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CAAC---------------------------------------A-------ACAACAGCAGCAGCTGC...........................................................................................................................................................................................................................................................................................................................................	22	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CAAC---------------------------------------A-------ACAACAGCAGCAGCTG............................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AGCAGCATCAGCA---ACAACA------...............................................................................................................................................................................	19	13	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................CA---GC---------AACAGCAG------------CAACAGCA---ACAG---C----------------------AGCA.......................................................................................	29	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................GCAGCAGCAAC------------------AGCAGCATCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................AGCA---GC---------AACAGCAG------------CAACAGCA---ACAG---C----------------------A..........................................................................................	28	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACAGCAG------------CAACAGCA---ACAG---C----------------------A..........................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....C-AGCAACAACAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................ACAGCAG------------CAACAGCA---ACAG---C----------------------A..........................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CAGCAG------------CAACAGCA---ACAG---C----------------------AGCA.......................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................CAAC---------------------------------------A-------ACAACAGCAGCAGCT.............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................GCAAC---------------------------------------A-------ACAACAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.........................................................CAGCAGCTGCAAC---------------------------------------A-------ACAAC.......................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................AACAGCAG------------CAACAGCA---ACAG---C----------------------...........................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................CAGCATCAGCA---ACAACA------GC---T.........................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................A---GC---------AACAGCAG------------CAACAGCA---.........................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................ACAGCAG------------CAACAGCA---ACAG---C----------------------...........................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CAGCATCAGCAACAGCAGCA....................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................AG------------CAACAGCA---ACAG---C----------------------AGCAAC---------............................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AGCAGC-AGCAGCAGCAGCAGCAGCAGC------------------AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG----------------------------------------------CAGCAGCAGCAGCAGCAGCAGCAGCA----------------------GCAGCAG---------------------CAGCAGCAGCAG------CAGCAGCAGCAGCAGCAGC----------AGCAGCAGCAGCAGCAGCAGCAGCAGCA---GCAGCA------GC------AGCAGC---------AGCAGCAG------------CAGCAGCA---GCAG---C----------------------AGCAGC---------AGCAGCAGCAACAGCAGCAGTAG------------------CACTCAGCT-CATATGCATAC--T---------GC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.....C-AGCAGCAGCAGCAGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	3	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................AG---C----------------------AGCAGC---------AGCAGCAGCAACAGC.............................................................	24	20	0.05	1	1	0	0	0	0	0

droGri2

AACAAC-AGCAGCAGCAACAGCAGCAAC------------------ATTCGCCGCATGCTCTGATACGCGTCAAAAAGGAGCCCACT---TCAAGTGGCAGCGCTCAACA-------GCAGCGGCATCTGTCACCGCATCATCATCAGCA----------------------GCAACAG---CAGCAGCACCAGCAACATCAACAGCAGCAG-------------------------C---------AGCAACAGCAGCAGCAGCAGCAA------------CA------GC------AACAGC---------AGCAACAC------------CATCAC------CAG---CAACA---GC-------------A------------------------ACAACAGCAACAG------------------------TCG-CTGCTGCATTC--AGCATCGCTG--	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................TCAAGTGGCAGCGCTCAACA-------............................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0
...................................................CCGCATGCTCTGATACGCGTCA........................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
..........................................................CTCTGATACGCGTCAAAAAGGAGCC..............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0
...AAC-AGCAGCAGCAACAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0

dse_752

scaffold_10:1678680-1678830 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-7.8	-7.2	-6.8