dse_740

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GGCCTTGCGCCTGGACTTCAAGCTTGCTCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTCTAGAGAGGGATGCAACGGAAATACCTATATATATGCGCATATATATATTATAGTGGGCAGTTCCAAAAAGCGATACATATATCCACATTTAGCGATGCATAGTTGCCCTGCTCTCCTGCCCTCTACTCACTTTCCTTGTACTATATATGTTATCTCCGCCATTCCCGAA *******************************************************************************...........(((...((((...((((((((((((......)))))))....)))))...)))).....)))..*********************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V114 embryo	V115 head	M054 female body	V113 male body
.................................................................................CTAGAGAGGGATGCAACGGAA.....................................................................................................................................................	21	0	1	1.00	1	0	0	1	0
..............................CGTCGAGACGAACTTTGATGGC.......................................................................................................................................................................................................	22	1	1	1.00	1	0	1	0	0
..............ACTTCAAGCTTGCTCCCGTCGAGAC....................................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0
.................................................................................................................................TTATAGTGGGCAGTTCCAAAAAGCGAT...............................................................................................	27	0	1	1.00	1	0	0	0	1
...............................................................................TTCTAGAGAGGGATGCAAC.........................................................................................................................................................	19	0	1	1.00	1	1	0	0	0
..........................................................................................................................................................ATACATATATCCACATTTAGCGATGC.......................................................................	26	0	1	1.00	1	0	1	0	0
....................................................ATTAGCAGTTTTTACAGT.....................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0
.........................................................................GATAATTTCTAGAGAGGG................................................................................................................................................................	18	2	8	0.38	3	2	1	0	0
........................................................................CGATAATTTCTAGAGAGG.................................................................................................................................................................	18	2	3	0.33	1	1	0	0	0
.......................................................................GCGATAATTTCTAGAGAGGG................................................................................................................................................................	20	3	7	0.14	1	0	0	0	1
....TTGCGCTTGGACTTGAAGGTT..................................................................................................................................................................................................................................	21	3	8	0.13	1	0	1	0	0
.........................................................................AATTATTTCTAGAGGGGAAT..............................................................................................................................................................	20	3	10	0.10	1	0	0	0	1

CCGGAACGCGGACCTGAAGTTCGAACGAGGGCAGCTCTGCTTGAAACTACCATAATCGTCAAAAATGTCAGGGATAATAAAGATCTCTCCCTACGTTGCCTTTATGGATATATATACGCGTATATATATAATATCACCCGTCAAGGTTTTTCGCTATGTATATAGGTGTAAATCGCTACGTATCAACGGGACGAGAGGACGGGAGATGAGTGAAAGGAACATGATATATACAATAGAGGCGGTAAGGGCTT *********************************************************************************************...........(((...((((...((((((((((((......)))))))....)))))...)))).....)))..*******************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V113 male body	V115 head	M054 female body
..........................................................................TAATAAAGATCTCCCCTTA..............................................................................................................................................................	19	2	2	0.50	1	1	0	0
...................................................................................................................................................................................................................TAAAGGCACATGATATATA.....................	19	2	5	0.20	1	1	0	0
...........................................................................AATAAAGATCTCCCCTTA..............................................................................................................................................................	18	2	7	0.14	1	0	1	0
.....................................................................................................................................................TTCTCTATGTACTTAGGTGT..................................................................................	20	3	12	0.08	1	0	0	1

Species	Coordinate	ID	Alignment
droSec2	scaffold_10:252727-252977 +	dse_740	GGCCTTGCGCCTGGACTTCAAGCTTGCTCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------ATGCAACGGAAA---------------------------------------------------------------TACCTATATATA----TG------CGCATATATATATTATAGT-----GG--GCAGTTCCAAAAAGCGATAC----------------------------------ATATA------TC---------------CACATTTAGCGATGC---------------A-TAGT-TGCC---------CTGC------------T----CTCCTGCCCTCTACTCACT--TTCCTTGTACTATATA--------TGTTATCTCCG---C-CATT-----CCC----------GA-------A
droSim2	x:316764-317014 +		GGCCTTGCGCCTGGACTTCAAGCTTGCTCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------ATGCAACGGAAA---------------------------------------------------------------TACCTATATATA----TG------CGCATATATATATTATAGT-----GG--GCAGTTCCAAAAAGCTATAC----------------------------------ATATA------TC---------------CACATTTAGCGATGC---------------A-TAGT-TGCC---------CTGC------------T----CTCCTGCCCTCTCCTCACT--TTCCTTGTACTATATA--------TGTTATCTCCG---C-CATT-----CCC----------GA-------A
dm3	chrX:396920-397169 +		GGCCTTGCGCCTGGACTTTAAGCTTGCGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------ATGCAACGGAAA---------------------------------------------------------------TACCTATATATA----TG------CGCATA--TATATTATATT-----GG--GCAGTTCCAAAATGCTATAC----------------------------------ATATA------TC---------------CACATTTAGCGATGC---------------A-TAGTATTCT---------CTGC------------T----CTCCTGCCCTCTCCGCACT--ATCCTTGTACTATATA--------TGTTATCTCCG---C-CATT-----CCC----------GA-------A
droEre2	scaffold_4644:348001-348257 +		GGCCTTGCGCCTGGACTTCAAGCTTGCGCCCGTCGAGACGAACTTTGATGGTATTAGCCGTTTTTACAGTCCCTATTATATC------TAGAGAGG------G-------ATGCAACGGAAA---------------------------------------------------------------TACATATATACA----TG------CGCATA--TATATTTTAGT-----GG--GCAGTTCCAAAAAACGATAC----------------------------------ATATA------TT---------------CACCTATAGCGATGC---------------A-TAGT-TGCC---------CTGCTCTT----CTGCT----CTCCTGCTCTCTCCACACC--TTCCTTGTACTATATA--------TGTTATCTCCG---T-CATT-----TCC----------GA-------A
droYak3	X:323127-323403 +	dya_1284	GGCCTTGCGCCTGGACTTCAAGCTTGCGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGAAA---------------------------------------------------------------TACATATATACA----TGCATACACGCATA--TATATTTTAGT-----CG--GCAGTTTCAAAAA-CGATAC----------------------------------ATATA------TC---------------CACCTATAGCGATGC---------------A-TCGT-TGCCCATAGTCCCCTGCTACC----CTGCT----CGCCTGCTC--TCCGCACCCCTTCCTTGTACTATATA--------TGTTATCCCCG---C-CATT-----TCC----------GA-ACTCAGA
droEug1	scf7180000409277:769100-769368 +		GGCCTTGCGCCTGGACTTCAAGCTGACGCCCGTCGAGACGGACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATT---------------------------------------------------------------TACATATATATA----TG------CGCATA--TGTATTTTAGT-----CG--CCAGCTAGAAAAAACGAAAC----------------------------------ACAAACACACACACACA-------TAGC----------CATTCCATGA---CCTGCACC-TAGT-TGGC---------CTGC------------TC---CTCCTGCTCACTCCGCACTAACTCCTTGTACTATATC------TATGTTATCTCC-----------------C----------CGAACCCGAT
droBia1	scf7180000301760:1432892-1433176 +		GGCCCTGCGGCTGGACTTCAAGCTGACGCCCGTCGAGACGAACTTTGCTGGTATTAGCAGTTTGTACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATA---------------------------------------------------------------TACACATATATA----TG------CGCATA--TTTAGTTTAGT-----CG--CCGGCTAGACAC--C-----AGACAC--------TACACCAGACACCAGACTCCCGACACACACGTACTCA-------TAGC----------CCCGCCATGA---CCTGCACC-TAGT-TGGC---------CTGC------------TC---CGCCCGCTCACTCCGCACCACGTCCTTGTACTATA----------TGTTACCCCCG---C-CATC-----GCC----------CG-------A
droTak1	scf7180000415281:335007-335290 -		GGCCCTGCGGCTGGACTTCAAGCTGACGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATA---------------------------------------------------------------TACATATATATA----TG------CGCATA--TGTATTTTAGT-----CG--CCAGCTAGAAAA--C-----TAAAACAACTAGAA-ACAC--CACACCAT----AC----------CACATA-------TAGCCAC--------ATGCCATGACCACCTGCACC-TAGT-TGGC---------CTGC------------TC---CTCCTGCTCACTCCGCACA-ATTCCTTGTACTATATA--------TGTTATCTCCG---T-CATT-----TCC----------CGAA-----A
droEle1	scf7180000491272:688275-688536 +		GGCCGTGCGCCTGGACTTCAAGCTGACGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTATACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATA---------------------------------------------------------------TACATATATATA----TG------CGCATA--TATATTTTAGT-----CG--CCAGCTAGAAAA--C-----AAAAAA--------------A-------------AAAAC----AACACACA-------TAGC----------CATGCCATGA---CCTGCACC-TAGT-TGGC---------CTGC------------TC---CTCCTGCTCACTCCGCACA--TACCTTGTACTATATC--------TGTTACCTCCG---T-CATT-----TCC----------CG-------A
droRho1	scf7180000776532:214892-215146 +		GGCCTTGCGCCTGGACTTCAAGCTGACGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTATACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATA---------------------------------------------------------------TACATATATATA----TG------CGCATA--TATATTTTAGT-----CG--CCAGCTAGAAAA--CGA-----AAAC--------------------------------------ACACACA-------TAGC----------CATGCCATGA---CCTGCACC-TAGT-TGGC---------TTGC------------TC---CTCCTGCTCACTCCGCACA--TTCCTTGTACTATATA--------TGTTATCCCTG---T-CATT-----TCC----------CG-------A
droFic1	scf7180000453927:869668-869961 +		GGCCTTGCGCCTGGACTTCAAACTGACGCCCGTTGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGCCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATA---------------------------------------------------------------TACATATATATATA--TG------CGCATA--TATAATTTAGT-----CG--CCAGCTAGAAAA--C-----AAAAAC--------------ACACACCAA----CCCACAAACCCACACACA-------TAGC----------CATGCCATGA---CCTGCACC-TAGT-TGGC---------CTGC------------TC---CTTCTGCTCACTCCGCACT---CGTTTGTACTATATACATGTATATGTTATTTCCT---C-CTTG----------TTTCCCCCCA-ACTC-GA
droKik1	scf7180000302698:575381-575656 -		GGCACTGCGCGTCGACTTCAAGCTGAAGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAAAGCGGAGGAGGA-------ACGC--CAGAAA---------------------------------------------------------------GCCCTATATATATACATG----------------AA---TAGC--AGCAGATCCGGCTAGAAAC--A----CACAC------------------------------ACACACACACAAACACATAGCATATA---------------GCCATGA---CCTGCACC-TAGT-TTGC---------A--C------------TC---TGCCAGCTTCTTCCC--------TATTGTACTATA----------TGTTGACTCTG---CTCATCATCCTCTACTTTTC----AC-CCTTCAC
droAna3	scaffold_12929:2466502-2466847 -		GGCACTGCGCCTGGACTTCAAGCTGGCGCCCGTCGAGGCGAACTTTGATGGTATTTCCAGTTTTCACAATCCCTATTATTTC------TAAAGAGGATTGAGG-------CTGC--CGGATGGCCGCGACACCAAAAATAACGAACAAAAAATGAACAGAAATTAGGAA-AAAACA-TACCACATT--ATATATATA----TG------TATATGTATATGCTATGCTGAAGCTAATCCAGCTAGAGAA--T---CC----------------------------------ACATA------GCCACA-------TAGC----------CATGTCATGA---ACTGCACTTTAGT-TAGC---------CTGCTACTGCTACTGCTACTGCTCCTGTTCACACCGCACC--TCCTCTGTACTATATA--------TTTTACATCTATATC-TATA-----TCT----------GT-------A
droBip1	scf7180000396434:456139-456454 -		GGCACTGCGCCTGGACTTTAAACTGGCGCCCGTCGAGGCAAACTTTGATGGTATTTCCAGTTTTCACAATCCCTATTATTTC------TAAAGAGGATTGAGG-------CTGC--CGGATGGCCCCGAAACCAA-ATTAATGAACAAA-AATGAACA-AAATTATGAAAAAAACATTACCACATTATATATATGTA----TA------TGTATATGTATATG---CTGCAGCTAATCCAGCTAGAGAA--T---C------------------------------------------------CACA-------TAGC----------CATGTCATGA---ACTGCACTTTAGT-TAGC---------CTGC------------T------CCTGCTCACACCGCACA--TCCTCTGTACTATATA--------TAT-ATCTACT---A-TATCTA---TCT----------TA-------A
dp5	XL_group1e:4411160-4411245 +		GGCTCTGCGGCTGGACTTCAAGCTGCTGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTATACAGTCCCTATTTTTTC------TAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_17:1352665-1352750 +		GGCTCTGCGGCTGGACTTCAAGCTGCTGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTATACAGTCCCTATTTTTTC------TAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004590:4363716-4363800 +		GGCTTTGCGTATCGATTTCAAACTGTTGCCCCTTGAGACGAAATATGATGGTATTAGCAGTTTATATAGTCCATATTTCT-T------TAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_12932:1354185-1354265 +		GGCGCTGCGCGTCGACTTCAAGCTGACGCCCGTCGAGAGCAACTTTGATGGTATTAGCAGTTATTACAATCCATACTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6473:3112956-3113077 -		GGCGCTGCGACTGGACTTCAAGCTGACGCCCGTTGAGAGCAACTTTGATGGTATTAGCAGTTATTACAATCCATACTTTTTTAGGCATTAAAGCGG------GTGCCCAACTGCAACGGCGA---------------------------------------------------------------CAGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14853:6663931-6664025 +		GGCGATGCGAGTCGACTTCAAACTATCGCCCGTCGAAAGCAATTTTGATGGTATTAGCAGTTATTACAATCCATACTTTTTT-----------AGG------C-------ATTAAACGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSec2

GGCCTTGCGCCTGGACTTCAAGCTTGCTCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------ATGCAACGGAAA---------------------------------------------------------------TACCTATATATA----TG------CGCATATATATATTATAGT-----GG--GCAGTTCCAAAAAGCGATAC----------------------------------ATATA------TC---------------CACATTTAGCGATGC---------------A-TAGT-TGCC---------CTGC------------T----CTCCTGCCCTCTACTCACT--TTCCTTGTACTATATA--------TGTTATCTCCG---C-CATT-----CCC----------GA-------A	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.................................................................................C------TAGAGAGG------G-------ATGCAACGGAA..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
..............................CGTCGAGACGAACTTTGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
..............ACTTCAAGCTTGCTCCCGTCGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................TTATAGT-----GG--GCAGTTCCAAAAAGCGAT....................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0
...............................................................................TTC------TAGAGAGG------G-------ATGCAAC..............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................................ATAC----------------------------------ATATA------TC---------------CACATTTAGCGATGC---------------......................................................................................................................................	26	1	1.00	1	0	0	0	1
....................................................ATTAGCAGTTTTTACAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

droSim2

GGCCTTGCGCCTGGACTTCAAGCTTGCTCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------ATGCAACGGAAA---------------------------------------------------------------TACCTATATATA----TG------CGCATATATATATTATAGT-----GG--GCAGTTCCAAAAAGCTATAC----------------------------------ATATA------TC---------------CACATTTAGCGATGC---------------A-TAGT-TGCC---------CTGC------------T----CTCCTGCCCTCTCCTCACT--TTCCTTGTACTATATA--------TGTTATCTCCG---C-CATT-----CCC----------GA-------A	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................GACGAACTTTGATGGTATTAGCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CGAGACGAACTTTGATGGTATTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GTCGAGACGAACTTTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................GCTTGCTCCCGTCGAGACGAACTTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...CTTGCGCCTGGACTTCAAGCTTGCTCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GTCGAGACGAACTTTGATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CCCGTCGAGACGAACTTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................TC------TAGAGAGG------G-------ATGCAACGGAA..........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TGC------------T----CTCCTGCCCTCTCCT..............................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CTTGCTCCCGTCGAGACGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GCTCCCGTCGAGACGAACTTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................TGCC---------CTGC------------T----CTCCTGCCCTCTCCTC.............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................A-TAGT-TGCC---------CTGC------------T----CTCCTGCCCTCT.................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GCTCCCGTCGAGACGAACTTTGATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................GACGAACTTTGATGGTATTAGCAGG......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

GGCCTTGCGCCTGGACTTTAAGCTTGCGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------ATGCAACGGAAA---------------------------------------------------------------TACCTATATATA----TG------CGCATA--TATATTATATT-----GG--GCAGTTCCAAAATGCTATAC----------------------------------ATATA------TC---------------CACATTTAGCGATGC---------------A-TAGTATTCT---------CTGC------------T----CTCCTGCCCTCTCCGCACT--ATCCTTGTACTATATA--------TGTTATCTCCG---C-CATT-----CCC----------GA-------A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........GCCTGGACTTTAAGCTTGCGCCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................TGCGCCCGTCGAGACGAACTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6
........................................................................................................................AA---------------------------------------------------------------TACCTATATATA----TG------CGCATA--TATAT.....................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................TAAGCTTGCGCCCGTCGAGACGATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................G-------ATGCAACGGAAA---------------------------------------------------------------TACCTATA..................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ACTTTAAGCTTGCGCCCGTCGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................T--ATCCTTGTACTATATA--------TGT.............................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................ATGCTATAC----------------------------------ATATA------TC---------------CAC.................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TATATT-----GG--GCAGTTCCAAAATGCT......................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................GC---------------A-TAGTATTCT---------CTGC------------T----CTCCT........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................AGCGATGC---------------A-TAGTATTCT---------CTGC------------T----C............................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AGCTTGCGCCCGTCGAGACGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................TCT---------CTGC------------T----CTCCTGCCCTCTCCGCA............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................TCGAGACGAACTTTGATGGTATTAGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TCCTTGTACTATATA--------TGG.............................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

GGCCTTGCGCCTGGACTTCAAGCTTGCGCCCGTCGAGACGAACTTTGATGGTATTAGCCGTTTTTACAGTCCCTATTATATC------TAGAGAGG------G-------ATGCAACGGAAA---------------------------------------------------------------TACATATATACA----TG------CGCATA--TATATTTTAGT-----GG--GCAGTTCCAAAAAACGATAC----------------------------------ATATA------TT---------------CACCTATAGCGATGC---------------A-TAGT-TGCC---------CTGCTCTT----CTGCT----CTCCTGCTCTCTCCACACC--TTCCTTGTACTATATA--------TGTTATCTCCG---T-CATT-----TCC----------GA-------A	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................ATACA----TG------CGCATA--TATATTTTAGT-----..........................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GATGC---------------A-TAGT-TGCC---------CTGCT.............................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..........................................CTTTGATGGTATTAGCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..............................CGTCGAGACGAACTTTGATGGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................ACATATATACA----TG------CGCATA--T.........................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................ATATA------TT---------------CACCTATAGCGATGC---------------......................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..........................................................................ATTATATC------TAGAGAGG------G-------ATGCAACG.............................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TGCTCTT----CTGCT----CTCCTGCTCT...................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............CTTCAAGCTTGCGCCCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0
.................................................................................C------TAGAGAGG------G-------ATGCAACG.............................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..................CAAGCTTGCGCCCGTCGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...............................................................................ATC------TAGAGAGG------G-------ATGCAACGGAA..........................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
........................................AACTTTGATGGTATTAGCCGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................................................ATATTTTAGT-----GG--GCAGTTCCA.............................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0

droYak3

GGCCTTGCGCCTGGACTTCAAGCTTGCGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGAAA---------------------------------------------------------------TACATATATACA----TGCATACACGCATA--TATATTTTAGT-----CG--GCAGTTTCAAAAA-CGATAC----------------------------------ATATA------TC---------------CACCTATAGCGATGC---------------A-TCGT-TGCCCATAGTCCCCTGCTACC----CTGCT----CGCCTGCTC--TCCGCACCCCTTCCTTGTACTATATA--------TGTTATCCCCG---C-CATT-----TCC----------GA-ACTCAGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............CTTCAAGCTTGCGCCCGTCGAGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................ATTTTAGT-----CG--GCAGTTTCAAAAA-C.......................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
................................................................................TC------TAGAGAGG------G-------CTGCAACGGAAA---------------------------------------------------------------..........................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................C------TAGAGAGG------G-------CTGCAACGGA...........................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................ATTATTTC------TAGAGAGG------G-------CTGC.................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............CTTCAAGCTTGCGCCCGTCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TTTAGT-----CG--GCAGTTTCAAAAA-C.......................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................ATTATTTC------TAGAGAGG------G-------CTGCAACGG............................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................GTCGAGACGAACTTTGATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................TTC------TAGAGAGG------G-------CTGCAACGGAAA---------------------------------------------------------------T.........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................ATTTTAGT-----CG--GCAGTTTCAAAAA-CGAT....................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............GACTTCAAGCTTGCGCCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................GTCGAGACGAACTTTGATGGTATTAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................TATTATTTC------TAGAGAGG------G-------CTGC.................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................CATACACGCATA--TATATTTTAGT-----CG--GC....................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................TTGCGCCCGTCGAGACGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................ATTATTTC------TAGAGAGG------G-------CT...................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................TATATTTTAGT-----CG--GCAGTTTCA.............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................GACGAACTTTGATGGTATTAGCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................C--TCCGCACCCCTTCCTTGTA...............................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............GACTTCAAGCTTGCGCCCGTCGAGACGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................ATATTTTAGT-----CG--GCAGTTT...............................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................GTCGAGACGAACTTTGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................TAGAGAGG------G-------CTGCAACGGAAA---------------------------------------------------------------TAC.......................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GGCCTTGCGCCTGGACTTCAAGCTGACGCCCGTCGAGACGGACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATT---------------------------------------------------------------TACATATATATA----TG------CGCATA--TGTATTTTAGT-----CG--CCAGCTAGAAAAAACGAAAC----------------------------------ACAAACACACACACACA-------TAGC----------CATTCCATGA---CCTGCACC-TAGT-TGGC---------CTGC------------TC---CTCCTGCTCACTCCGCACTAACTCCTTGTACTATATC------TATGTTATCTCC-----------------C----------CGAACCCGAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GGCCCTGCGGCTGGACTTCAAGCTGACGCCCGTCGAGACGAACTTTGCTGGTATTAGCAGTTTGTACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATA---------------------------------------------------------------TACACATATATA----TG------CGCATA--TTTAGTTTAGT-----CG--CCGGCTAGACAC--C-----AGACAC--------TACACCAGACACCAGACTCCCGACACACACGTACTCA-------TAGC----------CCCGCCATGA---CCTGCACC-TAGT-TGGC---------CTGC------------TC---CGCCCGCTCACTCCGCACCACGTCCTTGTACTATA----------TGTTACCCCCG---C-CATC-----GCC----------CG-------A	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GGCCCTGCGGCTGGACTTCAAGCTGACGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATA---------------------------------------------------------------TACATATATATA----TG------CGCATA--TGTATTTTAGT-----CG--CCAGCTAGAAAA--C-----TAAAACAACTAGAA-ACAC--CACACCAT----AC----------CACATA-------TAGCCAC--------ATGCCATGACCACCTGCACC-TAGT-TGGC---------CTGC------------TC---CTCCTGCTCACTCCGCACA-ATTCCTTGTACTATATA--------TGTTATCTCCG---T-CATT-----TCC----------CGAA-----A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGCCGTGCGCCTGGACTTCAAGCTGACGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTATACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATA---------------------------------------------------------------TACATATATATA----TG------CGCATA--TATATTTTAGT-----CG--CCAGCTAGAAAA--C-----AAAAAA--------------A-------------AAAAC----AACACACA-------TAGC----------CATGCCATGA---CCTGCACC-TAGT-TGGC---------CTGC------------TC---CTCCTGCTCACTCCGCACA--TACCTTGTACTATATC--------TGTTACCTCCG---T-CATT-----TCC----------CG-------A	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGCCTTGCGCCTGGACTTCAAGCTGACGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTATACAGTCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATA---------------------------------------------------------------TACATATATATA----TG------CGCATA--TATATTTTAGT-----CG--CCAGCTAGAAAA--CGA-----AAAC--------------------------------------ACACACA-------TAGC----------CATGCCATGA---CCTGCACC-TAGT-TGGC---------TTGC------------TC---CTCCTGCTCACTCCGCACA--TTCCTTGTACTATATA--------TGTTATCCCTG---T-CATT-----TCC----------CG-------A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GGCCTTGCGCCTGGACTTCAAACTGACGCCCGTTGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGCCCCTATTATTTC------TAGAGAGG------G-------CTGCAACGGATA---------------------------------------------------------------TACATATATATATA--TG------CGCATA--TATAATTTAGT-----CG--CCAGCTAGAAAA--C-----AAAAAC--------------ACACACCAA----CCCACAAACCCACACACA-------TAGC----------CATGCCATGA---CCTGCACC-TAGT-TGGC---------CTGC------------TC---CTTCTGCTCACTCCGCACT---CGTTTGTACTATATACATGTATATGTTATTTCCT---C-CTTG----------TTTCCCCCCA-ACTC-GA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGCACTGCGCGTCGACTTCAAGCTGAAGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTTTACAGTCCCTATTATTTC------TAAAGCGGAGGAGGA-------ACGC--CAGAAA---------------------------------------------------------------GCCCTATATATATACATG----------------AA---TAGC--AGCAGATCCGGCTAGAAAC--A----CACAC------------------------------ACACACACACAAACACATAGCATATA---------------GCCATGA---CCTGCACC-TAGT-TTGC---------A--C------------TC---TGCCAGCTTCTTCCC--------TATTGTACTATA----------TGTTGACTCTG---CTCATCATCCTCTACTTTTC----AC-CCTTCAC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GGCACTGCGCCTGGACTTCAAGCTGGCGCCCGTCGAGGCGAACTTTGATGGTATTTCCAGTTTTCACAATCCCTATTATTTC------TAAAGAGGATTGAGG-------CTGC--CGGATGGCCGCGACACCAAAAATAACGAACAAAAAATGAACAGAAATTAGGAA-AAAACA-TACCACATT--ATATATATA----TG------TATATGTATATGCTATGCTGAAGCTAATCCAGCTAGAGAA--T---CC----------------------------------ACATA------GCCACA-------TAGC----------CATGTCATGA---ACTGCACTTTAGT-TAGC---------CTGCTACTGCTACTGCTACTGCTCCTGTTCACACCGCACC--TCCTCTGTACTATATA--------TTTTACATCTATATC-TATA-----TCT----------GT-------A	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................ATGAACAGAAATTAGGAA-AA.......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................TGCTCCTGTTCACACCGCACC--TCCTCTG.................................................................	28	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................AATGAACAGAAATTAGGAA-A........................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................ATATGCTATGCTGAAGCT.........................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
...................AAGCTGGCGCCCGTCGAGGCGAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..........CTGGACTTCAAGCTGGCGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TGCTACTGCTCCTGTTCACACCGCACC--........................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCCTGTTCACACCGCACC--T.......................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................ATTGAGG-------CTGC--CGGATGGCCGC....................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................ACTGCACTTTAGT-TAGC---------CTG...............................................................................................................	20	1	1.00	1	0	1	0	0	0	0
....................................................................................................................CGGATGGCCGCGACACCAAAAA.........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............ACTTCAAGCTGGCGCCCGTCGAGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................A------GCCACA-------TAGC----------CATGTCATGA---.............................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0

droBip1

GGCACTGCGCCTGGACTTTAAACTGGCGCCCGTCGAGGCAAACTTTGATGGTATTTCCAGTTTTCACAATCCCTATTATTTC------TAAAGAGGATTGAGG-------CTGC--CGGATGGCCCCGAAACCAA-ATTAATGAACAAA-AATGAACA-AAATTATGAAAAAAACATTACCACATTATATATATGTA----TA------TGTATATGTATATG---CTGCAGCTAATCCAGCTAGAGAA--T---C------------------------------------------------CACA-------TAGC----------CATGTCATGA---ACTGCACTTTAGT-TAGC---------CTGC------------T------CCTGCTCACACCGCACA--TCCTCTGTACTATATA--------TAT-ATCTACT---A-TATCTA---TCT----------TA-------A	Size	Hit Count	Total Norm	Total
No Reads

dp5

GGCTCTGCGGCTGGACTTCAAGCTGCTGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTATACAGTCCCTATTTTTTC------TAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................GAGACGAACTTTGATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	6
.............GACTTCAAGCTGCTGCCCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................GTCGAGACGAACTTTGATGGTATTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........GGCTGGACTTCAAGCTGCTGCCCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............GGACTTCAAGCTGCTGCCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................GACGAACTTTGATGGTATTAGCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............GACTTCAAGCTGCTGCCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................ACTTTGATGGTATTAGCAGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................CGAGACGAACTTTGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1
........GGCTGGACTTCAAGCTGCTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................CGAGACGAACTTTGATGGTATT............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...............................GTCGAGACGAACTTTGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GGCTCTGCGGCTGGACTTCAAGCTGCTGCCCGTCGAGACGAACTTTGATGGTATTAGCAGTTTATACAGTCCCTATTTTTTC------TAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................GTCGAGACGAACTTTGATGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................AGCTGCTGCCCGTCGAGACG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0

droWil2

GGCTTTGCGTATCGATTTCAAACTGTTGCCCCTTGAGACGAAATATGATGGTATTAGCAGTTTATATAGTCCATATTTCT-T------TAGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................CTTGAGACGAAATATGATGGTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..........ATCGATTTCAAACTGTTGCCCCTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0
.....TGCGTATCGATTTCAAACTGTTGCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
..............................CCTTGAGACGAAATATGATG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
....................................................ATTAGCAGTTTATATAGTCCATATTT.....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0

droVir3

GGCGCTGCGCGTCGACTTCAAGCTGACGCCCGTCGAGAGCAACTTTGATGGTATTAGCAGTTATTACAATCCATACTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................GCCCGTCGAGAGCAACTTTGATGGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GACTTCAAGCTGACGCCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GACTTCAAGCTGACGCCCGTCGAGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GACTTCAAGCTGACGCCCGTCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................AACTTTGATGGTATTAGCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTCAAGCTGACGCCCGTCGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........GTCGACTTCAAGCTGACGCCCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CTGACGCCCGTCGAGAGCAACT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............CTTCAAGCTGACGCCCGTCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTCAAGCTGACGCCCGTCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAGAGCAACTTTGATGGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TTCAAGCTGACGCCCGTCGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TCAAGCTGACGCCCGTCGAGAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGCGCTGCGACTGGACTTCAAGCTGACGCCCGTTGAGAGCAACTTTGATGGTATTAGCAGTTATTACAATCCATACTTTTTTAGGCATTAAAGCGG------GTGCCCAACTGCAACGGCGA---------------------------------------------------------------CAGCCA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................TGAGAGCAACTTTGATGGTATTAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
............GGACTTCAAGCTGACGCCCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
............................CCCGTTGAGAGCAACTTTGAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.................TCAAGCTGACGCCCGTTGAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

GGCGATGCGAGTCGACTTCAAACTATCGCCCGTCGAAAGCAATTTTGATGGTATTAGCAGTTATTACAATCCATACTTTTTT-----------AGG------C-------ATTAAACGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dse_740

scaffold_10:252777-252927 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-10.6	-10.5	-10.4