ID:

dse_729

 Coordinate:

scaffold_1:11566198-11566348 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dsec_GLEANR_4606:1]; CDS [Dsec\GM21855-cds]; intron [Dsec\GM21855-in]; Antisense to intron [Dsec\GM19918-in]

No Repeatable elements found

mature
star
  1. scaffold_1:11564951-11564972 +
  2. dse_729  scaffold_1:11566260-11566281 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTTCAAGACCCAGCTTTGCCTTAACACTACTGCTTTCTTCGAGGCCAAGGTGCCCGCTTAGGTCAATTGAAGGGTCTTCTCCTAATTGGCCAAGGTTGTTTGTTTTCCTATATGATCAATCGTTTTTATATGAATACAAACATTTATGGTTTAAAATAAAAATTAAGAAATTTGCAAATTAAGCTTTAGACAGTCTCTAGTCAATATATTTATCTAAAAGTAAATGTTTAATGCCATTTTAAGCACACTA
*************************************************************************************.........(((((.((((........)))).)))))............********************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total V114
embryo
 M054
female body
 V113
male body		 V115
head
....................................................GCCCGCTTAGCTCAGTTG..................................................................................................................................................................................... 18 2 7 5.00 35 0 33 0 2
.....................................................................................ATTGGCCAAGGTTGTTTGT................................................................................................................................................... 19 0 1 2.00 2 0 0 2 0
.................................................................AATTGAAGGGTCTTCTCCTA...................................................................................................................................................................... 20 0 2 2.00 4 2 0 2 0
................................................................................................................ATGATCAATCGTTTTTATATGA..................................................................................................................... 22 0 2 2.00 4 0 4 0 0
....................................................................................AATTGGCCAAGGTTGTTTGTTTTC............................................................................................................................................... 24 0 1 2.00 2 2 0 0 0
..............................................................................TCTCCTAATTGGCCAAGGTTGTTTGTTC................................................................................................................................................. 28 1 1 1.00 1 0 0 1 0
..........................................................................................................TCCTATATGATCAATCGTTTTT........................................................................................................................... 22 0 2 1.00 2 1 1 0 0
....................CTTAACACTACTGCTTTCTTCGA................................................................................................................................................................................................................ 23 0 2 1.00 2 1 1 0 0
............................................................................CTTCTCCTAATTGGCCAAGGTTGTT...................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0
............................................................................CTTCTCCTAATTGGCCAAGGTTGTTTG.................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0
.....................................................................................................................................AATACAAACATTTATGGTT................................................................................................... 19 0 1 1.00 1 0 1 0 0
......................................................CCGCTTAGGTCAATTGAAG.................................................................................................................................................................................. 19 0 2 1.00 2 2 0 0 0
..................................................................................................................GATCAATCGTTTTTATATGAATACAAA.............................................................................................................. 27 0 1 1.00 1 0 1 0 0
............................................................................CTTCTCCTAATTGGCCAAGGTTGTTTGT................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0
.....................................................................................................................................................................................AAGCTTTAGACAGTCTCTAGT................................................. 21 0 1 1.00 1 1 0 0 0
................................................................................................................................ATATGAATACAAACATTTATGGTT................................................................................................... 24 0 1 1.00 1 0 1 0 0
........................................CGAGGCCAAGGTGCCCGCTTAGGTC.......................................................................................................................................................................................... 25 0 2 1.00 2 2 0 0 0
............................................................................CTTCTCCTAATTGGCCAAGGT.......................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0
..................................................................................................................GATCAATCGTTTTTATATGA..................................................................................................................... 20 0 2 1.00 2 1 1 0 0
..................................................................................................................................ATAAATACAAACATTTATGGT.................................................................................................... 21 1 1 1.00 1 0 1 0 0
...............................................................................................................................TATATGAATACAAACATTAAGGGT.................................................................................................... 24 2 1 1.00 1 0 0 1 0
............................................................................CTTCTCCTAATTGGCCAAG............................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0
................................................................................................................ATGATCAATCGTTTTTATATGAATACA................................................................................................................ 27 0 1 1.00 1 0 0 0 1
.......................................................................................TGGCCAAGGTTGTTTGTTTTCCT............................................................................................................................................. 23 0 1 1.00 1 1 0 0 0
.................................................................................CCTAATTGGCCAAGGTTGTTTGT................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0
............................................................................................................................................................................TTGCAAATTAAGCTTTAGACAGTCT...................................................... 25 0 1 1.00 1 0 0 1 0
......................................................................................TTGGCCAAGGTTGTTTGTTTTCCTAT........................................................................................................................................... 26 0 1 1.00 1 1 0 0 0
................................................................CAATTGAAGGGTCTTCTCCTAATT................................................................................................................................................................... 24 0 2 1.00 2 2 0 0 0
.................................................................................CCTAATTGGCCAAGGTTGTTTGTTT................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0
.....................................................................................ATTGGCCAAGGTTGTTTGTTTTCCTAT........................................................................................................................................... 27 0 1 1.00 1 0 0 0 1
..................................................................................................................GATCAATCGTTTTTATATGAAT................................................................................................................... 22 0 1 1.00 1 0 1 0 0
......................................................................................TTGGCCAAGGTTGTTTGTTTTCCT............................................................................................................................................. 24 0 1 1.00 1 1 0 0 0
....................................................................................AATTGGCCAAGGTTGTTTGT................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0
.....................................................................................................................CAATCGTTTTTATATGAATACA................................................................................................................ 22 0 1 1.00 1 0 1 0 0
................................................................................................................................ATATGAATACAAACATTTATG...................................................................................................... 21 0 1 1.00 1 1 0 0 0
...............................................AAGGTGCCCGCTTAGGTCAATTGAAGG................................................................................................................................................................................. 27 0 2 0.50 1 1 0 0 0
.......................................................CGCTTAGGTCAATTGAAGGGT............................................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0
..........................................................TTAGGTCAATTGAAGGGTCTTCTCCT....................................................................................................................................................................... 26 0 2 0.50 1 0 0 1 0
..........................................................TTAGGTCAATTGAAGGGT............................................................................................................................................................................... 18 0 2 0.50 1 1 0 0 0
................................................................CAATTGAAGGGTCTTCTC......................................................................................................................................................................... 18 0 2 0.50 1 1 0 0 0
..................................................GTGCCCGCTTAGGTCAATTGAAGG................................................................................................................................................................................. 24 0 2 0.50 1 0 0 1 0
...................................................TGCCCGCTTAGGTCAATTGAAGGGT............................................................................................................................................................................... 25 0 2 0.50 1 1 0 0 0
...............................................AAGGTGCCCGCTTAGGTCA......................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0
......................................................................................................GTTTTCCTATATAATCAATC................................................................................................................................. 20 1 2 0.50 1 1 0 0 0
..................................................GTGCCCGCTTAGGTCAATTGAAGGGT............................................................................................................................................................................... 26 0 2 0.50 1 1 0 0 0
.............................................CCAAGGTGCCCGCTTAGGTCAAT....................................................................................................................................................................................... 23 0 2 0.50 1 1 0 0 0
.....................................................................................ATTGGCCAGGGTTGTTTGTTTTCCTAT........................................................................................................................................... 27 1 2 0.50 1 1 0 0 0
................................GCTTTCTTCGAGGCCAAGGT....................................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0
.....................TTAACACTACTGCTTTCTTCGAGGCC............................................................................................................................................................................................................ 26 0 2 0.50 1 0 1 0 0
....CAAGACCCAGCTTTGCCTT.................................................................................................................................................................................................................................... 19 0 2 0.50 1 0 1 0 0
..............................................CAAGGTGCCCGCTTAGGTC.......................................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0
....................................................GCCCGCTTAGGTCAATTGAAGGGT............................................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0
........................................................................................GGCCAAAGTTGTTGATTTTCCT............................................................................................................................................. 22 3 4 0.50 2 0 2 0 0
.............................................CCAAGGTGCCCGCTTAGGTCAATTG..................................................................................................................................................................................... 25 0 2 0.50 1 0 0 0 1
..................................................GTGCCCGCTTAGGTCAATTGAAGGGTC.............................................................................................................................................................................. 27 0 2 0.50 1 0 0 1 0
.........................................................CTTAGGTCAATTGAAGGGT............................................................................................................................................................................... 19 0 2 0.50 1 1 0 0 0
............................................................................................................CTATATGATCAATCGTTTTTATATGA..................................................................................................................... 26 0 2 0.50 1 1 0 0 0
..............................................................................................................ATATGATCAATCGTTTTTATATGA..................................................................................................................... 24 0 2 0.50 1 0 0 1 0
.................................................................AATTGAAGGGTCTTCTCCTAATT................................................................................................................................................................... 23 0 2 0.50 1 0 1 0 0
......................TAACACTACTGCTTTCTTCGAGGC............................................................................................................................................................................................................. 24 0 2 0.50 1 0 1 0 0
......................................................CCGCTTAGGTCAATTGAAGGGT............................................................................................................................................................................... 22 0 2 0.50 1 1 0 0 0
..............................................CAAGGTGCCCGCTTAGGTCAATTGAAG.................................................................................................................................................................................. 27 0 2 0.50 1 0 1 0 0
...................................TTCTTCGAGGCCAAGGTGCCCGCTTAGG............................................................................................................................................................................................ 28 0 2 0.50 1 1 0 0 0
..............................................CAAGGTGCCCGCTTAGGTCA......................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0
.............................................CCAAGGTGCCCGCTTAGGTC.......................................................................................................................................................................................... 20 0 2 0.50 1 1 0 0 0
......................................................................................................GTTTTCCTATATGATCAATC................................................................................................................................. 20 0 2 0.50 1 0 1 0 0
...................................................................TTGAAGGGTCTTCTCCTAATT................................................................................................................................................................... 21 0 2 0.50 1 1 0 0 0
.........................CACTACTTCTCTCTTCGGGGC............................................................................................................................................................................................................. 21 3 3 0.33 1 0 1 0 0
........................................................................................GGCCAAAGTTGTTGATTTTCC.............................................................................................................................................. 21 3 10 0.30 3 1 2 0 0
..................................................................................................................GATCAATCATTTGTATACGA..................................................................................................................... 20 3 6 0.17 1 0 1 0 0
.........................................................................................GCCAAAGTTGTTGATTTTCCT............................................................................................................................................. 21 3 20 0.05 1 0 1 0 0

Anti-sense strand reads

AGAAGTTCTGGGTCGAAACGGAATTGTGATGACGAAAGAAGCTCCGGTTCCACGGGCGAATCCAGTTAACTTCCCAGAAGAGGATTAACCGGTTCCAACAAACAAAAGGATATACTAGTTAGCAAAAATATACTTATGTTTGTAAATACCAAATTTTATTTTTAATTCTTTAAACGTTTAATTCGAAATCTGTCAGAGATCAGTTATATAAATAGATTTTCATTTACAAATTACGGTAAAATTCGTGTGAT
*********************************************************************************************************************.........(((((.((((........)))).)))))............************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M054
female body
AGAAGTTGTCGGTCGAAAAGG...................................................................................................................................................................................................................................... 21 3 7 0.14 1 1
.................................................ACACGGGCGAATCGAGTCAA...................................................................................................................................................................................... 20 3 14 0.07 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_1:11566148-11566398 + dse_729 TCTTCAAGACCCAGCTTTGCCTTAACACTACTGCTTTCTTCGAGGCCAAGGTGCCCGCTTAGGTCAATTGAAGGG-TCTTC-----TCC---TAATTGGCCAAGGTTGTTTGTTTTCCTATA--------TGATCAATCGTTTTTATATGAATACAAACATTTAT-GGTTTAAAATAAAAATTAAGAAATTTGCAAATTAAGCTTTAGACAGTCTCTAGTCAATATATTTATCTAAAAGTAAATGTTTAATGCCATT-TT----AAGCACACTA---------------------
droSim2 2r:14757624-14757874 + TCTTCAAGACCCAGCTTTGCCTTAACACTACTGCTTTCTTCGAGGCCAAGGTGCCCGCTTAGGTCAATTGAAGGG-TTTTC-----TCC---TAATTGGCCATGGTTGTTTGTTTTTCTATA--------TGATCAATCGTTTTTATATGAATACAAACATTTAT-GGTTTAAAATAAAAATTTCAAAATTTGCAAATTAAGCTTTAGATTATCTCTAGTCAATAT-TTCATCTAAAAGTAAATGTTTATTGCCACTTTT----AAGCACTTTA---------------------
dm3 chr2R:14075733-14075928 + TCTTCAAGACGCAGCTTTGTCTTAACACCACTGCTTTCTTCGAGGCCAAGGTACCCGCTTAGGTCAATTGAAGGG-GTTCC-----TCC---TAA-TGGCAATAGTTGTTTGTTTT------------------CAATCGTTTTTATATGACTAAAAACAACTAT-AATGAAA---AAAAATTTCAAAATTTGCAAATTAAGC-----------------------------------------GTTTATTGACATT-TT----AAGCACACTA---------------------
droEre2 scaffold_4845:8296100-8296294 + TCTTCAAGACCCAGCTTTGCCTTAATACTAATGCTTTCTTCGAGGCCAAGGTACCCGTCTAGGTAAATTGTTACC-GTTCTCGTGTTTC---TGA-AGGCATTTTTT-----T------------------TATTATTATTTTGTTTATAATT----------------TTAAAATATAAATTTTAAAATTGGGAAATAAAACTTTAGATAACCTTTCGTCAATAG-TTCATCAAAAAGT-------------------------------------------------------
droYak3 2R:15110349-15110600 - TCTTCAAGACCCAGCTTTGCCTTAATACTACTGCTTTCTTCGAGGCCAAGGTACCCGCCTAGGTCAAGCGAAGGG-ACTCC-----TCC---TTATTCGCCATAATTGTTTGTTTTCCTAAA--------TGATTCATAATTTGTATATAATTTCAAA-ATTAATAAGCTCAAAATAAAAAAT-AAAAATATGCAAATAAAACTTTAGATAACCTCTAGCCAATAG-TTTATTTAAAAGTACA-GTTTATTGCCACT-TTCAATAAGGAAATTT---------------------
droEug1 scf7180000409672:3070036-3070125 + TCTTCAAGACCCAGCTGTGTCTTAATACCTCTGCTTTCTTCGAGGCCAGGATTCCTGTTTAATACATTCTTTGGA-AATTC-----TGT---TAAATGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000302292:2092305-2092371 + ATTTCAAAACCCAGCTATGTCTCAACACTTCTGCTTTCTTTGAGGCCAAGATACCCGCTTAGGTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000416016:672696-672859 - TCTTCAAGACCCAGCTATGCCTCAATACTACTGCTTTCTTCGAGGCCAAGATACCTGCCTAAGTCTATAAAAACGAGCAAC-----CCGTAGTTATTGGATGTTGTGGAATGTTCTTGCTTA--------TAGTAAATCATTATTAGAT----------------------------------------------------------------------------------------------------------------------CACTCTAAAAATAATACATTTTAAAATA
droEle1 scf7180000491027:616095-616226 + TCTTCCAGACCCAGCTGTGTCTCAATACCAGTGCTTTCTTCGAGGCCAAGATCCCAGTTTAATTCAATGTTAAAT-ACTTT-----T------------------------------TATTCAATTGAGTCAATCAAGCG-----ATAAAAAAACAAACCATTAT-GCTTTAAA-------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000769565:4398-4471 - TGTTCAAGACCCAGCTGTGCCTCAATACCAGTGCTTTCTTCGAGGCCAAGATTCCCGTTTAAGTCTTTTAAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453851:248971-249042 - TCTTCAGAACTCAGCTCTGTCTTAACACTTCTGCTTTCTTCGAGGCCAAGATTCCCGTCTAATTTAATAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302471:277057-277124 - ATTTCACCACCCAGCTGTGCCTCAATCCTAGCGCTGTCTACGAGGCCAAAGTACCAGTTTAGATTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:5036795-5036893 - TA--CAAGACCCAGTTGTGCCTCAACCCCGATGCCTTACACGAGGTTCAAGTACCAGTGTAAAGCTAA--------CTTTT-----TCAGAATAGTTAGTTAATGTAATTTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395751:262256-262308 - T--TCAAGACCCAGTTGTGCCTCAACCCCGAAGCCTTCCACGAGGTTCAAGTACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:11361082-11361148 - GGTACAGAACAGAGCTATGCCTCAATCCGAATGCTTTTTATGAGGCCCAAATACCCGTTTAGAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_4:6764212-6764278 - GGTACAGAACAGAGCTATGCCTCAATCCGAATGCTTTTTATGAGGCCCAAATACCCGTTTAGAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004513:3933825-3933882 - TA--CAAGACTTTGGTTTGTCTTAATTCGTCGGCCTTCTATGAGGCACAGATACCAGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:13865849-13865915 + ATCGGTCTACCCGTGTTTGCCTCAAGCCCGAAGCCTTTGAAATGGCTCAGGTGGTGGTGTAAATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:17370745-17370780 - ATCTGGAAACACGAGTTTGCCTCAAATCTAACGCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
TCTTCAAGACCCAGCTTTGCCTTAACACTACTGCTTTCTTCGAGGCCAAGGTGCCCGCTTAGGTCAATTGAAGGG-TCTTC-----TCC---TAATTGGCCAAGGTTGTTTGTTTTCCTATA--------TGATCAATCGTTTTTATATGAATACAAACATTTAT-GGTTTAAAATAAAAATTAAGAAATTTGCAAATTAAGCTTTAGACAGTCTCTAGTCAATATATTTATCTAAAAGTAAATGTTTAATGCCATT-TT----AAGCACACTA---------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................ATTGGCCAAGGTTGTTTGT......................................................................................................................................................................................1912.0020200
.................................................................AATTGAAGGG-TCTTC-----TCC---TA.........................................................................................................................................................................................................2022.0040220
.........................................................................................................................A--------TGATCAATCGTTTTTATATGA................................................................................................................................................2222.0044000
.............................................................................................AATTGGCCAAGGTTGTTTGTTTTC..................................................................................................................................................................................2412.0020020
...............................................................................TC-----TCC---TAATTGGCCAAGGTTGTTTGTTC....................................................................................................................................................................................2811.0010100
...................................................................................................................TCCTATA--------TGATCAATCGTTTTT......................................................................................................................................................2221.0021010
....................CTTAACACTACTGCTTTCTTCGA............................................................................................................................................................................................................................................................2321.0021010
.............................................................................CTTC-----TCC---TAATTGGCCAAGGTTGTT.........................................................................................................................................................................................2511.0010100
.............................................................................CTTC-----TCC---TAATTGGCCAAGGTTGTTTG.......................................................................................................................................................................................2711.0011000
......................................................................................................................................................AATACAAACATTTAT-GGTT.............................................................................................................................1911.0011000
......................................................CCGCTTAGGTCAATTGAAG..............................................................................................................................................................................................................................1921.0020020
...................................................................................................................................GATCAATCGTTTTTATATGAATACAAA.........................................................................................................................................2711.0011000
.............................................................................CTTC-----TCC---TAATTGGCCAAGGTTGTTTGT......................................................................................................................................................................................2811.0011000
.......................................................................................................................................................................................................AAGCTTTAGACAGTCTCTAGT...........................................................................2111.0010010
.................................................................................................................................................ATATGAATACAAACATTTAT-GGTT.............................................................................................................................2411.0011000
........................................CGAGGCCAAGGTGCCCGCTTAGGTC......................................................................................................................................................................................................................................2521.0020020
.............................................................................CTTC-----TCC---TAATTGGCCAAGGT.............................................................................................................................................................................................2111.0010010
...................................................................................................................................GATCAATCGTTTTTATATGA................................................................................................................................................2021.0021010
.............................................................................CTTC-----TCC---TAATTGGCCAAG...............................................................................................................................................................................................1911.0010010
.........................................................................................................................A--------TGATCAATCGTTTTTATATGAATACA...........................................................................................................................................2711.0010001
................................................................................................TGGCCAAGGTTGTTTGTTTTCCT................................................................................................................................................................................2311.0010010
.......................................................................................CC---TAATTGGCCAAGGTTGTTTGT......................................................................................................................................................................................2311.0010010
..............................................................................................................................................................................................TTGCAAATTAAGCTTTAGACAGTCT................................................................................2511.0010100
...............................................................................................TTGGCCAAGGTTGTTTGTTTTCCTAT..............................................................................................................................................................................2611.0010010
................................................................CAATTGAAGGG-TCTTC-----TCC---TAATT......................................................................................................................................................................................................2421.0020020
.......................................................................................CC---TAATTGGCCAAGGTTGTTTGTTT....................................................................................................................................................................................2511.0011000
..............................................................................................ATTGGCCAAGGTTGTTTGTTTTCCTAT..............................................................................................................................................................................2711.0010001
...................................................................................................................................GATCAATCGTTTTTATATGAAT..............................................................................................................................................2211.0011000
...............................................................................................TTGGCCAAGGTTGTTTGTTTTCCT................................................................................................................................................................................2411.0010010
.............................................................................................AATTGGCCAAGGTTGTTTGT......................................................................................................................................................................................2011.0010100
......................................................................................................................................CAATCGTTTTTATATGAATACA...........................................................................................................................................2211.0011000
.................................................................................................................................................ATATGAATACAAACATTTAT-G................................................................................................................................2111.0010010
...............................................AAGGTGCCCGCTTAGGTCAATTGAAGG.............................................................................................................................................................................................................................2720.5010010
.......................................................CGCTTAGGTCAATTGAAGGG-T..........................................................................................................................................................................................................................2120.5010100
..........................................................TTAGGTCAATTGAAGGG-TCTTC-----TCC---T..........................................................................................................................................................................................................2620.5010100
..........................................................TTAGGTCAATTGAAGGG-T..........................................................................................................................................................................................................................1820.5010010
................................................................CAATTGAAGGG-TCTTC-----TC...............................................................................................................................................................................................................1820.5010010
..................................................GTGCCCGCTTAGGTCAATTGAAGG.............................................................................................................................................................................................................................2420.5010100
...................................................TGCCCGCTTAGGTCAATTGAAGGG-T..........................................................................................................................................................................................................................2520.5010010
...............................................AAGGTGCCCGCTTAGGTCA.....................................................................................................................................................................................................................................1920.5010010
..................................................GTGCCCGCTTAGGTCAATTGAAGGG-T..........................................................................................................................................................................................................................2620.5010010
.............................................CCAAGGTGCCCGCTTAGGTCAAT...................................................................................................................................................................................................................................2320.5010010
................................GCTTTCTTCGAGGCCAAGGT...................................................................................................................................................................................................................................................2020.5010010
.....................TTAACACTACTGCTTTCTTCGAGGCC........................................................................................................................................................................................................................................................2620.5011000
....CAAGACCCAGCTTTGCCTT................................................................................................................................................................................................................................................................................1920.5011000
..............................................CAAGGTGCCCGCTTAGGTC......................................................................................................................................................................................................................................1920.5010010
....................................................GCCCGCTTAGGTCAATTGAAGGG-T..........................................................................................................................................................................................................................2420.5010010
.............................................CCAAGGTGCCCGCTTAGGTCAATTG.................................................................................................................................................................................................................................2520.5010001
..................................................GTGCCCGCTTAGGTCAATTGAAGGG-TC.........................................................................................................................................................................................................................2720.5010100
.........................................................CTTAGGTCAATTGAAGGG-T..........................................................................................................................................................................................................................1920.5010010
.....................................................................................................................CTATA--------TGATCAATCGTTTTTATATGA................................................................................................................................................2620.5010010
.......................................................................................................................ATA--------TGATCAATCGTTTTTATATGA................................................................................................................................................2420.5010100
.................................................................AATTGAAGGG-TCTTC-----TCC---TAATT......................................................................................................................................................................................................2320.5011000
......................TAACACTACTGCTTTCTTCGAGGC.........................................................................................................................................................................................................................................................2420.5011000
......................................................CCGCTTAGGTCAATTGAAGGG-T..........................................................................................................................................................................................................................2220.5010010
..............................................CAAGGTGCCCGCTTAGGTCAATTGAAG..............................................................................................................................................................................................................................2720.5011000
...................................TTCTTCGAGGCCAAGGTGCCCGCTTAGG........................................................................................................................................................................................................................................2820.5010010
..............................................CAAGGTGCCCGCTTAGGTCA.....................................................................................................................................................................................................................................2020.5010010
.............................................CCAAGGTGCCCGCTTAGGTC......................................................................................................................................................................................................................................2020.5010010
...............................................................................................................GTTTTCCTATA--------TGATCAATC............................................................................................................................................................2020.5011000
...................................................................TTGAAGGG-TCTTC-----TCC---TAATT......................................................................................................................................................................................................2120.5010010
droSim2
TCTTCAAGACCCAGCTTTGCCTTAACACTACTGCTTTCTTCGAGGCCAAGGTGCCCGCTTAGGTCAATTGAAGGG-TTTTC-----TCC---TAATTGGCCATGGTTGTTTGTTTTTCTATA--------TGATCAATCGTTTTTATATGAATACAAACATTTAT-GGTTTAAAATAAAAATTTCAAAATTTGCAAATTAAGCTTTAGATTATCTCTAGTCAATAT-TTCATCTAAAAGTAAATGTTTATTGCCACTTTT----AAGCACTTTA---------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................GATCAATCGTTTTTATAT..................................................................................................................................................1813.00300210000000000000
...................................................................................................................................GATCAATCGTTTTTATATGA................................................................................................................................................2012.00200200000000000000
.......................................................CGCTTAGGTCAATTGAAG..............................................................................................................................................................................................................................1812.00200200000000000000
..........................ACTACTGCTTTCTTCGAGGCCAAG.....................................................................................................................................................................................................................................................2411.00100100000000000000
.CTTCAAGACCCAGCTTTGCC..................................................................................................................................................................................................................................................................................2021.00200200000000000000
..................................................GTGCCCGCTTAGGTCAATTGAAGGG-T..........................................................................................................................................................................................................................2611.00100000000000100000
...................................................................................................................................GATCAATCGTTTTTATATGAA...............................................................................................................................................2111.00100100000000000000
.............................................................................TTTC-----TCC---TAATTGGCCATG...............................................................................................................................................................................................1911.00100100000000000000
....................................................................................................................................................................................................ATTAAGCTTTAGATTATCT................................................................................1911.00100100000000000000
..........................................................................G-TTTTC-----TCC---TAATTGGCCATGGTTGTTT........................................................................................................................................................................................2811.00100010000000000000
..............................................CAAGGTGCCCGCTTAGGTCAAT...................................................................................................................................................................................................................................2211.00100000000000100000
.CTTCAAGACCCAGCTTTGCCT.................................................................................................................................................................................................................................................................................2120.50100010000000000000
dm3
TCTTCAAGACGCAGCTTTGTCTTAACACCACTGCTTTCTTCGAGGCCAAGGTACCCGCTTAGGTCAATTGAAGGG-GTTCC-----TCC---TAA-TGGCAATAGTTGTTTGTTTT------------------CAATCGTTTTTATATGACTAAAAACAACTAT-AATGAAA---AAAAATTTCAAAATTTGCAAATTAAGC-----------------------------------------GTTTATTGACATT-TT----AAGCACACTA---------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................GCTTAGGTCAATTGAAGGG-GTTCC-----.................................................................................................................................................................................................................24114.001400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020002100000000
.......................................................CGCTTAGGTCAATTGAAGGG-GTTCC-----T................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..........................................................................................................................................................................................AAATTTGCAAATTAAGC-----------------------------------------GT.................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................................................GTCAATTGAAGGG-GTTCC-----TC...............................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................CTTAGGTCAATTGAAGGG-GT.........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................TTAGGTCAATTGAAGGG-GT.........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................TTGCAAATTAAGC-----------------------------------------GTTTATTGACAT.......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..................................................................................................................................................................................................AAATTAAGC-----------------------------------------GTTTATTGACATT-.....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CAAGGTACCCGCTTAGGT.......................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................ATTGACATT-TT----AAGCACACTA---------------------2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
.....................................................CCCGCTTAGGTCAATTGAAGGG-GTT........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CGCTTAGGTCAATTGAAGGG-GTTCC-----TCC---...........................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................CGCTTAGGTCAATTGAAGGG-GTTC.......................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CTTAACACCACTGCTTTCTTCGAGGC.........................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................CGCTTAGGTCAATTGAAGGG-...........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........................................................GCTTAGGTCAATTGAAGGG-...........................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................TAA-TGGCAATAGTTGTTTGT......................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.CTTCAAGACGCAGCTTTGT...................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................TCTTCGAGGCCAAGGTACCCGCTTA..........................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................AT-AATGAAA---AAAAATTTCAAA...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CCGCTTAGGTCAATTGAAGG.............................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................ACAACTAT-AATGAAA---AAAAAT.................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................ATTTGCAAATTAAGC-----------------------------------------GTTTATTGT..........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................ACTGCTTTCTTCGAGGCCAAGG....................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TCTTCAAGACCCAGCTTTGCCTTAATACTAATGCTTTCTTCGAGGCCAAGGTACCCGTCTAGGTAAATTGTTACC-GTTCTCGTGTTTC---TGA-AGGCATTTTTT-----T------------------TATTATTATTTTGTTTATAATT----------------TTAAAATATAAATTTTAAAATTGGGAAATAAAACTTTAGATAACCTTTCGTCAATAG-TTCATCAAAAAGT-------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................GTTACC-GTTCTCGTGTTTC---TGA-AGGC...................................................................................................................................................................................................2617.0073000400
.......................................................................TACC-GTTCTCGTGTTTC---TGA-AGGC...................................................................................................................................................................................................2415.0054000100
................................................................AAATTGTTACC-GTTCTCGT...................................................................................................................................................................................................................1915.0052000210
...........................................................................................................................................................................AAAATATAAATTTTAAAATTGGGA....................................................................................................2414.0042000020
........................................................................ACC-GTTCTCGTGTTTC---TGA-AGGC...................................................................................................................................................................................................2314.0041000300
............................................................................GTTCTCGTGTTTC---TGA-AGGC...................................................................................................................................................................................................2014.0040000310
....................................................................................................................................................................................................ATAAAACTTTAGATAACCTTTCGT...........................................................................2413.0031000200
.................................................................AATTGTTACC-GTTCTCGTGTTTC---TGA-A......................................................................................................................................................................................................2713.0030000300
............................................................................................................................................................................................ATTGGGAAATAAAACTTTA........................................................................................1913.0032000100
.......................................................................TACC-GTTCTCGTGTTTC---TGA-A......................................................................................................................................................................................................2112.0021100000
...............................................................................................................................................................................TATAAATTTTAAAATTGGGA....................................................................................................2012.0020000110
.............................................................................................................................................................................AATATAAATTTTAAAATTGGGA....................................................................................................2212.0021000010
.........................................................................................................................................................................................AAAATTGGGAAATAAAACTTTAGAT.....................................................................................2512.0022000000
.................................................................AATTGTTACC-GTTCTCGTGT.................................................................................................................................................................................................................2012.0021000100
....................................................................................................................................................................................................ATAAAACTTTAGATAACCTTTCGTCAATA......................................................................2912.0022000000
.......................................................................TACC-GTTCTCGTGTTTC---TGA-AGG....................................................................................................................................................................................................2312.0021000100
............................................................................................................................................................................................................TTAGATAACCTTTCGTCAATAG-TT..................................................................2412.0022000000
..........................................................................C-GTTCTCGTGTTTC---TGA-AGGC...................................................................................................................................................................................................2112.0022000000
...........................................GGCCAAGGTACCCGTCTAG.........................................................................................................................................................................................................................................1912.0022000000
..............................................................................................................................................................................ATATAAATTTTAAAATTGGGA....................................................................................................2112.0020000110
.............................................................................................................................................................................AATATAAATTTTAAAATTGGGAA...................................................................................................2312.0021000010
....................................................................................................................................................................................................ATAAAACTTTAGATAACCTTTCGTCAAT.......................................................................2812.0021000010
....................................................................................................................................................................................................ATAAAACTTTAGATAACCTTTCGTCA.........................................................................2612.0021000010
........................................................................ACC-GTTCTCGTGTTTC---TGA-A......................................................................................................................................................................................................2012.0022000000
..............................................CAAGGTACCCGTCTAGGT.......................................................................................................................................................................................................................................1812.0021000010
...........................................GGCCAAGGTACCCGTCTA..........................................................................................................................................................................................................................................1812.0020000020
.....................................................................GTTACC-GTTCTCGTGTTTC---TGA-AGGCAT.................................................................................................................................................................................................2812.0022000000
..........................................................................................................................................................................................................CTTTAGATAACCTTTCGTCAATAG-....................................................................2412.0022000000
......................................TTCGAGGCCAAGGTACCCGTCTAGGT.......................................................................................................................................................................................................................................2612.0020000200
............................................................................................................................................................................................................TTAGATAACCTTTCGTCAATA......................................................................2112.0021000100
.CTTCAAGACCCAGCTTTGC...................................................................................................................................................................................................................................................................................1911.0011000000
....................................................................................................................................................................................ATTTTAAAATTGGGAAATAAAAC............................................................................................2311.0010000100
.........................................GAGGCCAAGGTACCCGTCTAG.........................................................................................................................................................................................................................................2111.0010000010
................................................................................TCGTGTTTC---TGA-AGGCAT.................................................................................................................................................................................................1811.0011000000
...........................CTAATGCTTTCTTCGAGGC.........................................................................................................................................................................................................................................................1911.0011000000
....................................................................................................................................................................................................ATAAAACTTTAGATAACCTTTCGTCAA........................................................................2711.0011000000
.................TGCCTTAATACTAATGCTTTCTTCGA............................................................................................................................................................................................................................................................2611.0011000000
........................................................................................................................................................................................................AACTTTAGATAACCTTTCGT...........................................................................2011.0010000100
...................................................................TTGTTACC-GTTCTCGTGTTTC---TGA-AGGCA..................................................................................................................................................................................................2911.0011000000
..............................................................................................................................................................................................TGGGAAATAAAACTTTAGA......................................................................................1911.0010000100
...............................................................................................................................................................................................................GATAACCTTTCGTCAATAG-TTCATCAA............................................................2711.0011000000
..........................................................................................................................................................................................................CTTTAGATAACCTTTCGTCAA........................................................................2111.0011000000
...............................................................................CTCGTGTTTC---TGA-AGGCATT................................................................................................................................................................................................2011.0010100000
..................................................................ATTGTTACC-GTTCTCGTGT.................................................................................................................................................................................................................1911.0010000100
.........................................GAGGCCAAGGTACCCGTCTAGGT.......................................................................................................................................................................................................................................2311.0011000000
....................................TCTTCGAGGCCAAGGTACCCGTC............................................................................................................................................................................................................................................2311.0011000000
............................................................................................................................................................................AAATATAAATTTTAAAATTGGGA....................................................................................................2311.0010000010
...............................................................................................................................................................................................................GATAACCTTTCGTCAATAG-TT..................................................................2111.0011000000
................................................................................................................T------------------TATTATTATTTTGTTTATAATT----------------T.............................................................................................................................2411.0011000000
...........................................................................................................................................................................................AATTGGGAAATAAAACTTTA........................................................................................2011.0011000000
...................................................................................................................................................................................................AATAAAACTTTAGATAACCTTTCGTCA.........................................................................2711.0011000000
............................................................................................................................................................................................................TTAGATAACCTTTCGTCAATAG-TTCATCA.............................................................2911.0011000000
................................................................AAATTGTTACC-GTTCTCGTGTTTC---TG.........................................................................................................................................................................................................2611.0011000000
.............................................................................TTCTCGTGTTTC---TGA-AGGC...................................................................................................................................................................................................1911.0011000000
..........................................................................C-GTTCTCGTGTTTC---TGA-AGGCATT................................................................................................................................................................................................2411.0011000000
.....................................CTTCGAGGCCAAGGTACCCGTCTAGGT.......................................................................................................................................................................................................................................2711.0011000000
..................................................................................GTGTTTC---TGA-AGGCATTTTT.............................................................................................................................................................................................2011.0011000000
..............................................................................................................................................................................ATATAAATTTTAAAATTGGGAAAT.................................................................................................2411.0010000010
............................................................................................................................................................................................ATTGGGAAATAAAACTTTAGATA....................................................................................2311.0011000000
.......................................................................................................................................................................................................AAACTTTAGATAACCTTTCGTCA.........................................................................2311.0011000000
.........................................................................CC-GTTCTCGTGTTTC---TGA-AGGC...................................................................................................................................................................................................2211.0011000000
................................................................AAATTGTTACC-GTTCTCGTGTTTC---T..........................................................................................................................................................................................................2511.0011000000
...........................................................................................................................................................................................AATTGGGAAATAAAACTTTAGATAAC..................................................................................2611.0010000100
....................................TCTTCGAGGCCAAGGTACCCGTCTAG.........................................................................................................................................................................................................................................2611.0011000000
............................................................................GTTCTCGTGTTTC---TGA-AGGCA..................................................................................................................................................................................................2111.0011000000
............................................................................GTTCTCGTGTTTC---TGA-AG.....................................................................................................................................................................................................1811.0011000000
.........................................................................CC-GTTCTCGTGTTTC---TGA-AG.....................................................................................................................................................................................................2011.0010000100
..................................TTTCTTCGAGGCCAAGGTACCCGTCTAG.........................................................................................................................................................................................................................................2811.0011000000
.....................................................................................................................................................................................................TAAAACTTTAGATAACCTTTCGTCA.........................................................................2511.0011000000
.................................................................AATTGTTACC-GTTCTCGTGTTTC---T..........................................................................................................................................................................................................2411.0011000000
...................................................................................................................................................................................................AATAAAACTTTAGATAACCTTTCGTC..........................................................................2611.0010000100
...............................................................................................................................................................................................................GATAACCTTTCGTCAATA......................................................................1811.0011000000
.............................................................................................................................................................................................TTGGGAAATAAAACTTTAGATA....................................................................................2211.0010000100
..............................................................GTAAATTGTTACC-GTTCTCGTGTTTC---T..........................................................................................................................................................................................................2711.0011000000
............................................................................GTTCTCGTGTTTC---TGA-AGGCATTTT..............................................................................................................................................................................................2511.0011000000
................................................................................................................................................................................................................ATAACCTTTCGTCAATAG-TTC.................................................................2111.0011000000
...................................................................................................................................................................................................AATAAAACTTTAGATAACCTTTCGTCAAT.......................................................................2911.0010000100
....CAAGACCCAGCTTTGCCTTAATACTAAT.......................................................................................................................................................................................................................................................................2811.0011000000
.......................................................................................................................................................................................................AAACTTTAGATAACCTTTCGT...........................................................................2111.0010000010
.....................................................................GTTACC-GTTCTCGTGTTTC---TGA-A......................................................................................................................................................................................................2311.0010000100
........................................CGAGGCCAAGGTACCCGTCTAGGTA......................................................................................................................................................................................................................................2511.0010000100
................................GCTTTCTTCGAGGCCAAGGTACC................................................................................................................................................................................................................................................2311.0011000000
.............................................................................................................................................................................AATATAAATTTTAAAATTGGGAAAT.................................................................................................2511.0010000010
................................................................AAATTGTTACC-GTTCTCGTGTTT...............................................................................................................................................................................................................2311.0010000100
......................TAATACTAATGCTTTCTTCG.............................................................................................................................................................................................................................................................2011.0011000000
.......................AATACTAATGCTTTCTTCGAGGCC........................................................................................................................................................................................................................................................2411.0010000100
.......................................................................TACC-GTTCTCGTGTTTC---TGA-.......................................................................................................................................................................................................2011.0010000010
..........................................................................................................................................................................................................CTTTAGATAACCTTTCGT...........................................................................1811.0010000010
.....................................................CCCGTCTAGGTAAATTGTTACC-...........................................................................................................................................................................................................................2211.0010000100
...............................................................................................................................................................................................................GATAACCTTTCGTCAATAG-TTCATC..............................................................2511.0011000000
.....................................................................GTTACC-GTTCTCGTGTTTC---TGA-AGGCA..................................................................................................................................................................................................2711.0011000000
................................GCTTTCTTCGAGGCCAAGGTACCC...............................................................................................................................................................................................................................................2411.0011000000
............................................................................................................................................................................................................TTAGATAACCTTTCGTCAATAG-TTC.................................................................2511.0010000100
............................................................................................................................................................................................ATTGGGAAATAAAACTTTAGATAA...................................................................................2411.0010000100
..................................TTTCTTCGAGGCCAAGGTACCCGTCTA..........................................................................................................................................................................................................................................2711.0010000010
......................................................................................................................................................................................TTTAAAATTGGGAAATAAAACTTTA........................................................................................2511.0011000000
......................................................................................TTC---TGA-AGGCATTTTTT-----T------------------T...................................................................................................................................................................1911.0011000000
...........................................GGCCAAGGTACCCGTCTAGGT.......................................................................................................................................................................................................................................2111.0010000010
...............TTTGCCTTAATACTAATGC.....................................................................................................................................................................................................................................................................1911.0011000000
............................................................................................................................................................................................................TTAGATAACCTTTCGTCAATAG-TTCATC..............................................................2811.0011000000
..............................................CAAGGTACCCGTCTAGGTA......................................................................................................................................................................................................................................1911.0010000100
........................................................GTCTAGGTAAATTGTTACC-GTTCTCGT...................................................................................................................................................................................................................2711.0011000000
.....................................................................GTTACC-GTTCTCGTGTTTC---TGA-AGG....................................................................................................................................................................................................2511.0010000010
..................................................................ATTGTTACC-GTTCTCGTGTTTC---TGA-.......................................................................................................................................................................................................2511.0011000000
...........................................................................................................................................................................................................TTTAGATAACCTTTCGTCAATAA-AA..................................................................2511.0011000000
....................................................ACCCGTCTAGGTAAATTGTTACC-GTTCT......................................................................................................................................................................................................................2811.0011000000
...............................................................................................................................................................................................................GATAACCTTTCGTCAATAG-T...................................................................2011.0011000000
.........................................................................CC-GTTCTCGTGTTTC---TGA-AGGCATT................................................................................................................................................................................................2511.0011000000
.......................................................................................................................................................................................................AAACTTTAGATAACCTTTCGTCAATA......................................................................2611.0011000000
..............................................................................................................................................................................ATATAAATTTTAAAATTGGGAA...................................................................................................2211.0010000100
......................................................................TTACC-GTTCTCGTGTTTC---TGA-AGGC...................................................................................................................................................................................................2511.0011000000
..................................................................................................................................................................................................................AACCTTTCGTCAATAG-TT..................................................................1811.0011000000
.............GCTTTGCCTTAATACTAATGC.....................................................................................................................................................................................................................................................................2111.0011000000
..........................................................................................................................................................................................................CTTTAGATAACCTTTCGTCAAT.......................................................................2211.0011000000
................................................................................................................................................................................ATAAATTTTAAAATTGGGAA...................................................................................................2011.0011000000
.....................................................................................................................................................................................TTTTAAAATTGGGAAATAAAACT...........................................................................................2311.0011000000
...........................................................................................................................................................................................................TTTAGATAACCTTTCGTCAAA.......................................................................2111.0011000000
..........................................................CTAGGTAAATTGTTACC-GTTCTCGTG..................................................................................................................................................................................................................2611.0010000100
...........................................................................................................................................................................................................TTTAGATAACCTTTCGTCAATA......................................................................2211.0010000100
....CAAGACCCAGCTTTGCCTTAATACTAATG......................................................................................................................................................................................................................................................................2911.0011000000
.......................................................................TACC-GTTCTCGTGTTTC---TGA-AGGCATT................................................................................................................................................................................................2711.0011000000
...................................................................TTGTTACC-GTTCTCGTGT.................................................................................................................................................................................................................1811.0011000000
..........................................................................................................................................................................................................CTTTAGATAACCTTTCGTCA.........................................................................2011.0011000000
.CTTCAAGACCCAGCTTTGCCTTA...............................................................................................................................................................................................................................................................................2311.0011000000
..............CTTTGCCTTAATACTAATGC.....................................................................................................................................................................................................................................................................2011.0010000100
droYak3
TCTTCAAGACCCAGCTTTGCCTTAATACTACTGCTTTCTTCGAGGCCAAGGTACCCGCCTAGGTCAAGCGAAGGG-ACTCC-----TCC---TTATTCGCCATAATTGTTTGTTTTCCTAAA--------TGATTCATAATTTGTATATAATTTCAAA-ATTAATAAGCTCAAAATAAAAAAT-AAAAATATGCAAATAAAACTTTAGATAACCTCTAGCCAATAG-TTTATTTAAAAGTACA-GTTTATTGCCACT-TTCAATAAGGAAATTT---------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................AAGCGAAGGG-ACTCC-----TCC---TT.........................................................................................................................................................................................................2013.00303000000000
..................................................GTACCCGCCTAGGTCAAGCGAAGGG-...........................................................................................................................................................................................................................2513.00301000020000
...............................................AAGGTACCCGCCTAGGTCAAGCGAAGG.............................................................................................................................................................................................................................2712.00200000020000
.CTTCAAGACCCAGCTTTGC...................................................................................................................................................................................................................................................................................1922.00404000000000
........................................................................................................................................................................................................................................................ATTGCCACT-TTCAATAAGGA..........................2012.00202000000000
...............................................................................................................GTTTTCCTAAA--------TGATTCATAAT..........................................................................................................................................................2212.00202000000000
............AGCTTTGCCTTAATACTACTGCTTTCTT...............................................................................................................................................................................................................................................................2821.50303000000000
..................................................................................................................................................TATAATTTCAAA-ATTAATAAGCTC............................................................................................................................2411.00101000000000
..................................................GTACCCGCCTAGGTCAAGCGAA...............................................................................................................................................................................................................................2211.00101000000000
.................................................GGTACCCGCCTAGGTCAAGCGAAGG.............................................................................................................................................................................................................................2511.00100000010000
........................................................................................................ATTGTTTGTTTTCCTAAA--------T....................................................................................................................................................................1911.00101000000000
.................................................GGTACCCGCCTAGGTCAAGCGAAGGC-...........................................................................................................................................................................................................................2611.00100000010000
...............................................................................................................................................................ATTAATAAGCTCAAAATAAAA...................................................................................................................2111.00100000010000
....................................................ACCCGCCTAGGTCAAGCGAAGG.............................................................................................................................................................................................................................2211.00100000010000
...............................................AAGGTACCCGCCTAGGTCAAGCGAA...............................................................................................................................................................................................................................2511.00100000010000
...............................................................................................................................................................ATTAATAAGCTCAAAATAAAAAAT-AAAA...........................................................................................................2811.00101000000000
...............................................................................................................GTTTTCCTAAA--------TGATTCAT.............................................................................................................................................................1911.00101000000000
................................................................................................................TTTTCCTAAA--------TGATTCATAATTTGT......................................................................................................................................................2511.00101000000000
.................................................GGTACCCGCCTAGGTCAAGCGAAG..............................................................................................................................................................................................................................2411.00100000010000
.....................................CTTCGAGGCCAAGGTACCCGC.............................................................................................................................................................................................................................................2111.00101000000000
.........................................GAGGCCAAGGTACCCGCCTAGGT.......................................................................................................................................................................................................................................2321.00200200000000
...........................................................TAGGTCAAGCGAAGGG-ACTCC-----TCC---TTATT......................................................................................................................................................................................................2911.00100000010000
..............................................................................................................TGTTTTCCTAAA--------TGATTCATAATTT........................................................................................................................................................2511.00101000000000
.................................................................................................................................................................TAATAAGCTCAAAATAAAAA..................................................................................................................2011.00100000010000
...................................................................................................................TCCTAAA--------TGATTCATAATT.........................................................................................................................................................1911.00101000000000
...................................................TACCCGCCTAGGTCAAGCGAAGG.............................................................................................................................................................................................................................2311.00100000010000
........................ATACTACTGCTTTCTTCGA............................................................................................................................................................................................................................................................1911.00101000000000
...................................................TACCCGCCTAGGTCAAGCG.................................................................................................................................................................................................................................1911.00101000000000
................................................................................................................................................................................................GCAAATAAAACTTTAGATAACCT................................................................................2311.00101000000000
..................................................GTACCCGCCTAGGTCAAGC..................................................................................................................................................................................................................................1911.00101000000000
...........CAGCTTTGCCTTAATACTACTGCT....................................................................................................................................................................................................................................................................2421.00202000000000
..............................................................................................................................................................................................ATGCAAATAAAACTTTAGATAACCTCT..............................................................................2711.00101000000000
....................CTTAATACTACTGCTTTCTTCGA............................................................................................................................................................................................................................................................2311.00101000000000
..................................................................................................................................................................................................................AACCTCTAGCCAATAG-TTT.................................................................1911.00101000000000
..............................................CAAGGTACCCGCCTAGGTCAAGCGAAG..............................................................................................................................................................................................................................2711.00100000010000
.............................ACTGCTTTCTTCGAGGCCAAG.....................................................................................................................................................................................................................................................2111.00101000000000
...........................CTACTGCTTTCTTCGAGGC.........................................................................................................................................................................................................................................................1911.00101000000000
.............................................................................................TATTCGCCATAATTGTTTGT......................................................................................................................................................................................2011.00100000010000
........................................................................GGG-ACTCC-----TCC---TTATTCGCC..................................................................................................................................................................................................2011.00101000000000
...................................................................................................................TCCTAAA--------TGATTCATAATTTGTA.....................................................................................................................................................2311.00101000000000
.....................................................................................................................................................AATTTCAAA-ATTAATAAGCTCAAAAT.......................................................................................................................2611.00101000000000
.................................................GGTACCCGCCTAGGTCAAGCGAAGGG-A..........................................................................................................................................................................................................................2711.00100000010000
..........................ACTACTGCTTTCTTCGAGGCCAAG.....................................................................................................................................................................................................................................................2411.00101000000000
........................................CGAGGCCAAGGTACCCGCC............................................................................................................................................................................................................................................1911.00101000000000
..............................................................................................................................................TGTATATAATTTCAAA-ATTA....................................................................................................................................2011.00101000000000
...............................................................................................................GTTTTCCTAAA--------TGATTCATAATTTGTAT....................................................................................................................................................2811.00101000000000
...............................................................................................................GTTTTCCTAAA--------TGATTCATAATT.........................................................................................................................................................2311.00101000000000
..............................................................................................ATTCGCCATAATTGTTTG.......................................................................................................................................................................................1811.00101000000000
................................................................................................................................................................TTAATAAGCTCAAAATAAAA...................................................................................................................2011.00101000000000
........................................................................................................................................................................................................................................................ATTGCCACT-TTCAATAAG............................1811.00101000000000
..................................................GTACCCGCCTAGGTCAAGCGAAGG.............................................................................................................................................................................................................................2411.00101000000000
.................................................................................................................TTTCCTAAA--------TGATTCATAATTT........................................................................................................................................................2211.00101000000000
............................................................................ACTCC-----TCC---TTATTCGCCAT................................................................................................................................................................................................1911.00101000000000
..............................................................................................................TGTTTTCCTAAA--------TGATTCATAATTTGTAT....................................................................................................................................................2911.00101000000000
.......................................................................................................................AAA--------TGATTCATAATTTGTAT....................................................................................................................................................2011.00101000000000
........................ATACTACTGCTTTCTTCGAGGCCAAG.....................................................................................................................................................................................................................................................2611.00101000000000
....CAAGACCCAGCTTTGCCTTA...............................................................................................................................................................................................................................................................................2021.00202000000000
..........................................................................G-ACTCC-----TCC---TTATTCGCCATAA..............................................................................................................................................................................................2211.00101000000000
........................................CGAGGCCAAGGTACCCGCCTAGGTC......................................................................................................................................................................................................................................2511.00101000000000
..................................................GTACCCGCCTAGGTCAAGCGAAGGG-A..........................................................................................................................................................................................................................2611.00100000010000
...........................................................................................................GTTTGTTTTCCTAAA--------TGATT................................................................................................................................................................2011.00100000010000
................................................................CAAGCGAAGGG-ACTCC-----TCC---TTATT......................................................................................................................................................................................................2411.00100000010000
...TCAAGACCCAGCTTTGCCTT................................................................................................................................................................................................................................................................................2021.00202000000000
.............................................................................................................TTGTTTTCCTAAA--------TGATTCATAAT..........................................................................................................................................................2411.00101000000000
...............................................................................................................GTTTTCCTAAA--------TGATTCATAATTTG.......................................................................................................................................................2511.00101000000000
...............................................AAGGTACCCGCCTAGGTCAAGCGAAG..............................................................................................................................................................................................................................2611.00101000000000
..........................................................CTAGGTCAAGCGAAGGG-ACTCC-----TCC---TTATT......................................................................................................................................................................................................3011.00100000010000
....................................................................................................................................................................................................ATAAAACTTTAGATAACCTCTAGCCAAT.......................................................................2811.00101000000000
..............................................CAAGGTACCCGCCTAGGTCAAGCGAA...............................................................................................................................................................................................................................2611.00100000010000
.......GACCCAGCTTTGCCTTAAT.............................................................................................................................................................................................................................................................................1920.50101000000000
.................TGCCTTAATACTACTGCTTTCT................................................................................................................................................................................................................................................................2220.50101000000000
..............................................CAAGGTACCCGCCTAGGTCA.....................................................................................................................................................................................................................................2020.50101000000000
..TTCAAGACCCAGCTTTGCC..................................................................................................................................................................................................................................................................................1920.50101000000000
.CTTCAAGACCCAGCTTTGCCTTAATAC...........................................................................................................................................................................................................................................................................2720.50110000000000
................TTGCCTTAATACTACTGCTTT..................................................................................................................................................................................................................................................................2120.50101000000000
....................CTTAATACTACTGCTTTCTT...............................................................................................................................................................................................................................................................2020.50101000000000
..............CTTTGCCTTAATACTACTGCTTTC.................................................................................................................................................................................................................................................................2420.50101000000000
.............................................CCAAGGTACCCGCCTAGGT.......................................................................................................................................................................................................................................1920.50100100000000
.CTTCAAGACCCAGCTTTGCCT.................................................................................................................................................................................................................................................................................2120.50101000000000
.......GACCCAGCTTTGCCTTAATACTA.........................................................................................................................................................................................................................................................................2320.50101000000000
..........................................AGGCCAAGGTACCCGCCTA..........................................................................................................................................................................................................................................1920.50101000000000
.............GCTTTGCCTTAATACTACTGCTTT..................................................................................................................................................................................................................................................................2420.50101000000000
...............TTTGCCTTAATACTACTGCTTTCTT...............................................................................................................................................................................................................................................................2520.50101000000000
....CAAGACCCAGCTTTGCCTT................................................................................................................................................................................................................................................................................1920.50101000000000
...TCAAGACCCAGCTTTGCCTTAATA............................................................................................................................................................................................................................................................................2420.50100000010000
TCTTCAAGACCCAGCTTTGCCT.................................................................................................................................................................................................................................................................................2220.50101000000000
..................GCCTTAATACTACTGCTTT..................................................................................................................................................................................................................................................................1920.50101000000000
droEug1
TCTTCAAGACCCAGCTGTGTCTTAATACCTCTGCTTTCTTCGAGGCCAGGATTCCTGTTTAATACATTCTTTGGA-AATTC-----TGT---TAAATGG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
ATTTCAAAACCCAGCTATGTCTCAACACTTCTGCTTTCTTTGAGGCCAAGATACCCGCTTAGGTCAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TCTTCAAGACCCAGCTATGCCTCAATACTACTGCTTTCTTCGAGGCCAAGATACCTGCCTAAGTCTATAAAAACGAGCAAC-----CCGTAGTTATTGGATGTTGTGGAATGTTCTTGCTTA--------TAGTAAATCATTATTAGAT----------------------------------------------------------------------------------------------------------------------CACTCTAAAAATAATACATTTTAAAATASizeHit CountTotal NormTotal
No Reads
droEle1
TCTTCCAGACCCAGCTGTGTCTCAATACCAGTGCTTTCTTCGAGGCCAAGATCCCAGTTTAATTCAATGTTAAAT-ACTTT-----T------------------------------TATTCAATTGAGTCAATCAAGCG-----ATAAAAAAACAAACCATTAT-GCTTTAAA-------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGTTCAAGACCCAGCTGTGCCTCAATACCAGTGCTTTCTTCGAGGCCAAGATTCCCGTTTAAGTCTTTTAAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TCTTCAGAACTCAGCTCTGTCTTAACACTTCTGCTTTCTTCGAGGCCAAGATTCCCGTCTAATTTAATAAAA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
ATTTCACCACCCAGCTGTGCCTCAATCCTAGCGCTGTCTACGAGGCCAAAGTACCAGTTTAGATTTAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TA--CAAGACCCAGTTGTGCCTCAACCCCGATGCCTTACACGAGGTTCAAGTACCAGTGTAAAGCTAA--------CTTTT-----TCAGAATAGTTAGTTAATGTAATTTGTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................AA--------CTTTT-----TCAGAATAGTTAGT...................................................................................................................................................................................................2111.001000010
............................................GTTCAAGTACCAGTGTAAAGCTAA--------C..........................................................................................................................................................................................................................2511.001010000
.............................................TTCAAGTACCAGTGTAAAGCTAA--------C..........................................................................................................................................................................................................................2411.001000010
...............TGTGCCTCAACCCCGATGCCTTAC................................................................................................................................................................................................................................................................2411.001010000
..................................................GTACCAGTGTAAAGCTAA--------CT.........................................................................................................................................................................................................................2011.001000010
..................GCCTCAACCCCGATGCCTTACACGAG...........................................................................................................................................................................................................................................................2611.001100000
................GTGCCTCAACCCCGATGCCTTAC................................................................................................................................................................................................................................................................2311.001010000
............................................................................CTTTT-----TCAGAATAGTTAGTTAATGT.............................................................................................................................................................................................2511.001000010
.............................................................................TTTT-----TCAGAATAGTTAGTT..................................................................................................................................................................................................1911.001000010
......................CAACCCCGATGCCTTACACGA............................................................................................................................................................................................................................................................2111.001100000
...............................................................................TT-----TCAGAATAGTTAGTTAAT...............................................................................................................................................................................................2011.001000010
....................................TACACGAGGTTCAAGTACCAGT.............................................................................................................................................................................................................................................2211.001000010
.......GACCCAGTTGTGCCTCAACCCCGATGC.....................................................................................................................................................................................................................................................................2720.501010000
...............TGTGCCTCAACCCCGATGCC....................................................................................................................................................................................................................................................................2020.501010000
.........................................GAGGTTCAAGTACCAGTGC...........................................................................................................................................................................................................................................1920.501010000
droBip1
T--TCAAGACCCAGTTGTGCCTCAACCCCGAAGCCTTCCACGAGGTTCAAGTACC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
GGTACAGAACAGAGCTATGCCTCAATCCGAATGCTTTTTATGAGGCCCAAATACCCGTTTAGAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...ACAGAACAGAGCTATGCCT.................................................................................................................................................................................................................................................................................1914.0040400000000
...ACAGAACAGAGCTATGCCTC................................................................................................................................................................................................................................................................................2013.0030300000000
...........................................GGCCCAAATACCCGTTTAGA........................................................................................................................................................................................................................................2012.0020200000000
...ACAGAACAGAGCTATGCCTCAATCCGA.........................................................................................................................................................................................................................................................................2712.0020200000000
..............................ATGCTTTTTATGAGGCCCAAATACCC...............................................................................................................................................................................................................................................2611.0010100000000
....CAGAACAGAGCTATGCCTC................................................................................................................................................................................................................................................................................1911.0010100000000
..........AGAGCTATGCCTCAATCCGAATGCTT...................................................................................................................................................................................................................................................................2611.0010100000000
....CAGAACAGAGCTATGCCTCAAT.............................................................................................................................................................................................................................................................................2211.0010100000000
......................................TATGAGGCCCAAATACCCGTTTAGA........................................................................................................................................................................................................................................2511.0010100000000
...ACAGAACAGAGCTATGCCTCA...............................................................................................................................................................................................................................................................................2111.0010100000000
....CAGAACAGAGCTATGCCTCAATCCGAA........................................................................................................................................................................................................................................................................2711.0010100000000
............AGCTATGCCTCAATCCGAAT.......................................................................................................................................................................................................................................................................2011.0010100000000
....CAGAACAGAGCTATGCCT.................................................................................................................................................................................................................................................................................1811.0010100000000
....................CTCAATCCGAATGCTTTTTATGA............................................................................................................................................................................................................................................................2311.0010010000000
.............GCTATGCCTCAATCCGAAT.......................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
GGTACAGAACAGAGCTATGCCTCAATCCGAATGCTTTTTATGAGGCCCAAATACCCGTTTAGAGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...ACAGAACAGAGCTATGCCT.................................................................................................................................................................................................................................................................................1917.007700000
.GTACAGAACAGAGCTATGCCT.................................................................................................................................................................................................................................................................................2114.004400000
.............GCTATGCCTCAATCCGAATGC.....................................................................................................................................................................................................................................................................2111.001010000
...ACAGAACAGAGCTATGCCTC................................................................................................................................................................................................................................................................................2011.001000001
droWil2
TA--CAAGACTTTGGTTTGTCTTAATTCGTCGGCCTTCTATGAGGCACAGATACCAGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........CTTTGGTTTGTCTTAATTCGTC........................................................................................................................................................................................................................................................................2212.00201100
.........CTTTGGTTTGTCTTAATTCGTCGGC.....................................................................................................................................................................................................................................................................2512.00200200
......................TAATTCGTCGGCCTTCTATGAG...........................................................................................................................................................................................................................................................2211.00100100
...................................TTCTATGAGGCACAGATACC................................................................................................................................................................................................................................................2011.00100100
..................................CTTCTATGAGGCACAGATACCA...............................................................................................................................................................................................................................................2211.00100010
......................TAATTCGTCGGCCTTCTATGAGGC.........................................................................................................................................................................................................................................................2411.00100100
..................GTCTTAATTCGTCGGCCC...................................................................................................................................................................................................................................................................1811.00110000
.........................TTCGTCGGCCTTCTATGAGG..........................................................................................................................................................................................................................................................2011.00100100
....................CTTAATTCGTCGGCCTTCTATGAGG..........................................................................................................................................................................................................................................................2511.00100100
....................CTTAATTCGTCGGCCTTCTATGAGGCACA......................................................................................................................................................................................................................................................2911.00110000
........................ATTCGTCGGCCTTCTATGAG...........................................................................................................................................................................................................................................................2011.00100100
.....................TTAATTCGTCGGCCTTCTATGAGGC.........................................................................................................................................................................................................................................................2511.00100100
.........CTTTGGTTTGTCTTAATTCGTCGGCC....................................................................................................................................................................................................................................................................2611.00100100
...........................CGTCGGCCTTCTATGAGGCACAGA....................................................................................................................................................................................................................................................2411.00101000
.........CTTTGGTTTGTCTTAATTCGTCGGCCTT..................................................................................................................................................................................................................................................................2811.00101000
....................CTTAATTCGTCGGCCTTCTATGAG...........................................................................................................................................................................................................................................................2411.00100100
.....................TTAATTCGTCGGCCTTCTATGAG...........................................................................................................................................................................................................................................................2311.00100100
..................GTCTTAATTCGTCGGCCTT..................................................................................................................................................................................................................................................................1911.00100100
..........TTTGGTTTGTCTTAATTCGTC........................................................................................................................................................................................................................................................................2111.00100100
droVir3
ATCGGTCTACCCGTGTTTGCCTCAAGCCCGAAGCCTTTGAAATGGCTCAGGTGGTGGTGTAAATTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................CTTTGAAATGGCTCAGGTGGTGGT.............................................................................................................................................................................................................................................2413.003000100000000000000000000000000000000000000000000000000000002000
...................................TTTGAAATGGCTCAGGTGGTGGTGTA..........................................................................................................................................................................................................................................2613.003001000000000000000000000000000000000000000000000000000000002000
..................................CTTTGAAATGGCTCAGGTGGT................................................................................................................................................................................................................................................2113.003001100000000000000000000000000000000000000000000000000000001000
..CGGTCTACCCGTGTTTGC...................................................................................................................................................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000003
.................................CCTTTGAAATGGCTCAGGTGGT................................................................................................................................................................................................................................................2212.002000200000000000000000000000000000000000000000000000000000000000
........ACCCGTGTTTGCCTCAAGCCCGA........................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...GGTCTACCCGTGTTTGCCTCAAGCCC..........................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
.................................CCTTTGAAATGGCTCAGGTGGTGGTGTA..........................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.......................................AAATGGCTCAGGTGGTGGT.............................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
...............................AGCCTTTGAAATGGCTCAGGTGGTG...............................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
...........................................GGCTCAGGTGGTGGTGTAAA........................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................AGCCTTTGAAATGGCTCAGGTGGT................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
...............................AGCCTTTGAAATGGCTCAGGTGGTGGT.............................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................GCCTTTGAAATGGCTCAGGTGGTGGC.............................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
..................................CTTTGAAATGGCTCAGGTGGTGGC.............................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
.....................................TGAAATGGCTCAGGTGGT................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...................................TTTGAAATGGCTCAGGTGGTGGT.............................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
....................CTCAAGCCCGAAGCCTTTGAAAT............................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................................GCCTTTGAAATGGCTCAGGTGGTG...............................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
................................GCCTTTGAAATGGCTCAGGTGGT................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.................................CCTTTGAAATGGCTCAGGT...................................................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
................................GCCTTTGAAATGGCTCAGGTGGTGGTGT...........................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
................................GCCTTTGAAATGGCTCAGGTGGTGGT.............................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
........................................AATGGCTCAGGTGGTGGTGT...........................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
droGri2
ATCTGGAAACACGAGTTTGCCTCAAATCTAACGCCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:35 PM