ID:

dse_681

 Coordinate:

scaffold_1:7815456-7815606 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.9 -5.9 -5.8

Flybase annnotation

exon [dsec_GLEANR_4313:2]; CDS [Dsec\GM21543-cds]; intron [Dsec\GM21543-in]

No Repeatable elements found

mature
  1. dse_891  scaffold_1640:142-162 +
  2. dse_1351  scaffold_4580:1067-1087 -
  3. dse_1431  scaffold_5408:206-226 +
  4. dse_681  scaffold_1:7815557-7815577 +
star
  1. dse_891  scaffold_1640:117-137 +
  2. dse_1351  scaffold_4580:1092-1112 -
  3. dse_1431  scaffold_5408:181-201 +
  4. dse_681  scaffold_1:7815532-7815552 +
  5. scaffold_1:7817737-7817757 +
  6. scaffold_13914:807-827 +

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTTTTTGTTAATCCTAAACGTAAAAAGTAATACGCAATTTTCTTTTGATTACCACCATGGCGACCTACTCCAGCATTAGCTGCTCTCCCACATGCGCAACTTCTTCATATCCACGGACGACACCGGAATGTGCGAAACGGTGATGCTGAGCGAACAAGTCCTTCACGCAGCAGAGGAACATGAAGCGTTCCTTCCTGGAGTGGCGCAACCGGATGCCTGGTGTTTCGCTCCGGCGTTGTCCCGCCCCCCG
******************************************************************************************************************************...((((.(((((.((..(((...))).))..))..))).))))..******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V115
head
 V113
male body		 V114
embryo
...........................................TTTTGATTACCACCATGGCGA........................................................................................................................................................................................... 21 0 6 0.50 3 1 1 1 0
.......................................................................................................................................................CGAACAAGTCCTTCACGCAGC............................................................................... 21 0 4 0.50 2 0 2 0 0
..............................................................................................................................GAATGTGCGAAACGGTGATGC........................................................................................................ 21 0 6 0.50 3 0 2 1 0
............................................TTTGATTACCACCATGGCGACC......................................................................................................................................................................................... 22 0 4 0.50 2 1 0 1 0
................................................................................................................................ATGTGCGAAACGGTGATGCTGT..................................................................................................... 22 1 6 0.33 2 0 1 1 0
.............................................................CGACCTACTCCAGCATTAGCTG........................................................................................................................................................................ 22 0 4 0.25 1 1 0 0 0
...........................................TTTTGATTACCACCATGGCGAC.......................................................................................................................................................................................... 22 0 4 0.25 1 0 0 1 0
.........................................................................................................................................................................................................TGGCGCAACCGGATGCCTGGT............................. 21 0 4 0.25 1 0 1 0 0
.............................................................CTACCTACTCCAGCATTAGCTGCTCTC................................................................................................................................................................... 27 1 4 0.25 1 1 0 0 0
.............................................................................TAGCTGCTCTCCCACATGCGC......................................................................................................................................................... 21 0 4 0.25 1 0 0 0 1
.............................................................TGACCTACTCCAGCATTAGCTG........................................................................................................................................................................ 22 1 4 0.25 1 1 0 0 0
............................................................GCGACCTACTCCAGCATTAGC.......................................................................................................................................................................... 21 0 4 0.25 1 1 0 0 0
................................................................CCTGCTCCAGCATTAGCTGCTC..................................................................................................................................................................... 22 1 4 0.25 1 0 1 0 0
.............................................TTGATTACCACCATGGCGACC......................................................................................................................................................................................... 21 0 4 0.25 1 0 0 1 0
....................................................................................................CTTCTTCATATCCACGGACGA.................................................................................................................................. 21 0 4 0.25 1 1 0 0 0
......................................................ACCATGGCGACCTACTCCAGC................................................................................................................................................................................ 21 0 4 0.25 1 1 0 0 0
............................................TTTGATTACCACCATGGCGAC.......................................................................................................................................................................................... 21 0 4 0.25 1 0 0 1 0
.............................................................................................................................................TGATGCTGAGCGAACAAGTT.......................................................................................... 20 1 4 0.25 1 0 1 0 0
......................................................................................................................................................................CGCAGCAGAGGAACATGAAGC................................................................ 21 0 4 0.25 1 0 1 0 0
..................................................TACCACCATGGCGACCTACTCC................................................................................................................................................................................... 22 0 4 0.25 1 1 0 0 0
................................................................................................................................ATGTGCGAAACGGTGATG......................................................................................................... 18 0 6 0.17 1 0 1 0 0
...............................................................................................................................AATGTGCGAAACGGTGATGT........................................................................................................ 20 1 6 0.17 1 0 0 1 0
........................................TTCTTTTGATTGCCACCATGG.............................................................................................................................................................................................. 21 1 6 0.17 1 1 0 0 0
........................................................................................................................................AACGGTGATGCTGAGCGACCA.............................................................................................. 21 1 6 0.17 1 0 0 1 0
........................................TTCTTTTGATTACCACCATGG.............................................................................................................................................................................................. 21 0 6 0.17 1 1 0 0 0
.......................................TTTCTTTTGATTACCACCATGG.............................................................................................................................................................................................. 22 0 6 0.17 1 1 0 0 0
...................................................................................................................................TGCGAAACGGTGATGCTGAGC................................................................................................... 21 0 6 0.17 1 0 1 0 0
........................................................................................................................................................................CAGCAGAGGAGCATGAAGCGT.............................................................. 21 1 6 0.17 1 0 0 1 0
.........................................TCTTTTGATTACCACCATGGTT............................................................................................................................................................................................ 22 2 6 0.17 1 1 0 0 0
.....................................ATTTTCTTTTGATTACCACCA................................................................................................................................................................................................. 21 0 6 0.17 1 1 0 0 0
................................................................................................................................ATGTGCGAAACGGTGATGCTG...................................................................................................... 21 0 6 0.17 1 0 1 0 0
................................................................................................................................ATGTGCGAAACGGTGATGCTGTT.................................................................................................... 23 2 6 0.17 1 0 0 1 0
..........................................CTTTTGATTACCACCATGGC............................................................................................................................................................................................. 20 0 6 0.17 1 1 0 0 0
..........................................CTTTTGATTACCACCATGGCG............................................................................................................................................................................................ 21 0 6 0.17 1 0 1 0 0
...........................................TTTTGATTGCCGCCATGGCGA........................................................................................................................................................................................... 21 2 6 0.17 1 0 0 1 0
...............................................................................................................................AATGTGCGAAACGGTGATG......................................................................................................... 19 0 6 0.17 1 1 0 0 0
..............................................................................................................................GAATGTGCGAAGCGGTGATGC........................................................................................................ 21 1 7 0.14 1 0 0 1 0
................................................................................................................CACGGACGACACCGGAATG........................................................................................................................ 19 0 7 0.14 1 0 1 0 0
................................................................................................................CGCGGACGACACCGGAATGTGC..................................................................................................................... 22 1 7 0.14 1 0 0 1 0
........................................................................................................TTCATATCCACGGACGACACC.............................................................................................................................. 21 0 7 0.14 1 0 1 0 0
...............................................................................................................................AATGTGCGAAGCGGTGATGCT....................................................................................................... 21 1 7 0.14 1 0 0 1 0
.......................AAAAGCAAGACGTAATTTTCTT.............................................................................................................................................................................................................. 22 3 8 0.13 1 1 0 0 0
.........................................................................................................................................................................AGCAGAGGAACATGAAGC................................................................ 18 0 9 0.11 1 0 0 0 1

Anti-sense strand reads

GAAAAAACAATTAGGATTTGCATTTTTCATTATGCGTTAAAAGAAAACTAATGGTGGTACCGCTGGATGAGGTCGTAATCGACGAGAGGGTGTACGCGTTGAAGAAGTATAGGTGCCTGCTGTGGCCTTACACGCTTTGCCACTACGACTCGCTTGTTCAGGAAGTGCGTCGTCTCCTTGTACTTCGCAAGGAAGGACCTCACCGCGTTGGCCTACGGACCACAAAGCGAGGCCGCAACAGGGCGGGGGGC
*******************************************************************************...((((.(((((.((..(((...))).))..))..))).))))..****************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V113
male body		 V115
head
 M054
female body
 V114
embryo
...........................................................CCGCTGGGTGAGGTCGTAATC........................................................................................................................................................................... 21 1 4 1.50 6 3 3 0 0
.....................................................GTGGTACCGCTGGATGAGGTC................................................................................................................................................................................. 21 0 4 1.25 5 2 3 0 0
........................................................GTACCGCTGGATGAGGTCGTA.............................................................................................................................................................................. 21 0 4 1.00 4 2 0 1 1
....................................................GGTGGTACCGCTGGATGAGGT.................................................................................................................................................................................. 21 0 4 1.00 4 2 2 0 0
..........................................................ACCGCTGGGTGAGGTCGTAAT............................................................................................................................................................................ 21 1 4 1.00 4 2 2 0 0
........................................................GTACCGCTGGGTGAGGTCGTA.............................................................................................................................................................................. 21 1 4 1.00 4 1 1 2 0
...........................................................CCGCTGGATGAGGTCGTAATC........................................................................................................................................................................... 21 0 4 0.75 3 1 2 0 0
............................................................CGCTGGGTGAGGTCGTAATCG.......................................................................................................................................................................... 21 1 4 0.75 3 3 0 0 0
...................................................TGGTGGTACCGCTGGATGAGGT.................................................................................................................................................................................. 22 0 4 0.75 3 1 2 0 0
.....................................................TTGGTACCGCTGGATGAGGTCG................................................................................................................................................................................ 22 1 4 0.75 3 1 1 1 0
............................................................CGCTGGATGAGGTCGTAATC........................................................................................................................................................................... 20 0 4 0.50 2 1 0 1 0
.............................................................GCTGGGTGAGGTCGTAATC........................................................................................................................................................................... 19 1 4 0.50 2 0 2 0 0
..........................................................ACCGCTGGGTGAGGTCGTAATC........................................................................................................................................................................... 22 1 4 0.50 2 1 1 0 0
....................................................GGTGGTACCGCTGGATGAGGTC................................................................................................................................................................................. 22 0 4 0.50 2 2 0 0 0
.......................................................GGTACCGCTGGGTGAGGTCGT............................................................................................................................................................................... 21 1 4 0.50 2 0 1 1 0
............................................................CGCTGGATGAGGTCGTAATCG.......................................................................................................................................................................... 21 0 4 0.50 2 1 1 0 0
...............................................CTAATGGTGGTACCGCTGGAT....................................................................................................................................................................................... 21 0 4 0.25 1 1 0 0 0
............................................................CGCTGGGTGAGGTCGTAAT............................................................................................................................................................................ 19 1 4 0.25 1 1 0 0 0
..............................................................................................................................................................CAGGAAGTGCGTCGTCTCCTT........................................................................ 21 0 4 0.25 1 0 0 1 0
.......................................................GGTACCGCTGGATGAGGTCGTAA............................................................................................................................................................................. 23 0 4 0.25 1 0 0 1 0
.................................................................................................................................................................GAAGTGCGTCGTCTCCTTGTA..................................................................... 21 0 4 0.25 1 0 0 1 0
.......................................................GGTACCGCTGGGTGAGGTCGTA.............................................................................................................................................................................. 22 1 4 0.25 1 1 0 0 0
....................................................TGTGGTACCGCTGGATGAGGTC................................................................................................................................................................................. 22 1 4 0.25 1 0 1 0 0
..................................................TTGGTGGTACCGCTGTATGAGGT.................................................................................................................................................................................. 23 2 4 0.25 1 0 0 1 0
....................................................GGTGGTACCGCTGGATGAG.................................................................................................................................................................................... 19 0 4 0.25 1 0 1 0 0
..........................................................ACCGCTGGATGAGGTCGTAA............................................................................................................................................................................. 20 0 4 0.25 1 1 0 0 0
.............................................................GCCGGATGAGGTCGTAATCGA......................................................................................................................................................................... 21 1 4 0.25 1 1 0 0 0
....................................................TTTGGTACCGCTGGGTGAGGTCG................................................................................................................................................................................ 23 3 4 0.25 1 1 0 0 0
.....................................................GTGGTACCGCTGGGTGAGGTCT................................................................................................................................................................................ 22 2 4 0.25 1 0 0 1 0
...................................................TGGTGGTGCCGCTGGATGAGGT.................................................................................................................................................................................. 22 1 4 0.25 1 0 1 0 0
...........................................................CCGATGGGTGAGGTCGTAATC........................................................................................................................................................................... 21 2 4 0.25 1 0 0 1 0
................................................................................................................................................................GGAAGTGCGTCGTCTCCTT........................................................................ 19 0 4 0.25 1 0 1 0 0
....................................................GGTGGTACCGCTGGGTGAGGTC................................................................................................................................................................................. 22 1 4 0.25 1 1 0 0 0
.................................................AATGGTGGTACCGCTGGATG...................................................................................................................................................................................... 20 0 4 0.25 1 1 0 0 0
.......................................................................................................................................................................................TTCGCAAGGAAGGACCTCAC................................................ 20 0 4 0.25 1 0 1 0 0
.........................................................................................................................................TGCCACTACGACTCGCTTGTT............................................................................................. 21 0 4 0.25 1 0 0 0 1
.....................................................CTGGTACCGCTGGGTGAGGTC................................................................................................................................................................................. 21 2 4 0.25 1 1 0 0 0
.........................................................................................GTGTACGCGTTGGAGAAGTAT............................................................................................................................................. 21 1 4 0.25 1 1 0 0 0
........................................................GTACCGCTGGGTGAGGTCGTC.............................................................................................................................................................................. 21 2 4 0.25 1 0 1 0 0
....................................................GGTGGTACCGCTGGATGA..................................................................................................................................................................................... 18 0 4 0.25 1 0 0 1 0
.....................................................TTGGTACCGCTGGGTGAGGTCG................................................................................................................................................................................ 22 2 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................................GCCTACGGACCACAAAGCGAG.................... 21 0 4 0.25 1 0 1 0 0
..................................................................TTGAGGTCGTAATCGACGAGAG................................................................................................................................................................... 22 1 4 0.25 1 1 0 0 0
..................................................................................................................................................................................................GGACCTCACCGCGTTGGCCTA.................................... 21 0 4 0.25 1 0 1 0 0
...........................................................................................................................................................................................................CGCGTTGGCCTACGGACCACA........................... 21 0 4 0.25 1 1 0 0 0
.......................................................GGTACCGCTGGATGAGGTCG................................................................................................................................................................................ 20 0 4 0.25 1 0 0 1 0
..............................................TTTAATGGTGGTACCGCTGGATG...................................................................................................................................................................................... 23 2 4 0.25 1 1 0 0 0
.................................................................................................................................................................................................................GGCCTACGGACCACAAAGCGAGGC.................. 24 0 4 0.25 1 0 0 1 0
...........................................................CCGCTGGATGAGGTCGTAAT............................................................................................................................................................................ 20 0 4 0.25 1 1 0 0 0
....................................................TGTGGTACCGCTGGGTGAGGTC................................................................................................................................................................................. 22 2 4 0.25 1 1 0 0 0
..........................................................................................................................TGGCCTTACACGCTTTGCCAC............................................................................................................ 21 0 6 0.17 1 0 0 1 0
...............................................................................................................................TTACACGCTTTGCCACTACGAC...................................................................................................... 22 0 6 0.17 1 0 1 0 0
........................................................................................................................................................................GTCGTCTCCTTGTACTTCGCA.............................................................. 21 0 6 0.17 1 0 0 1 0
...................................GTTAAAAGAGAACTAGTGGTG................................................................................................................................................................................................... 21 2 6 0.17 1 0 0 1 0
.........................................TGAAAACTAATGGTGGTAC............................................................................................................................................................................................... 19 1 6 0.17 1 0 1 0 0
..........................................................................................................................................................................CGTCTCCTTGTACTTCGCA.............................................................. 19 0 6 0.17 1 0 1 0 0
..................................................ATGGTGGTACCGCTGGGT....................................................................................................................................................................................... 18 1 6 0.17 1 0 0 1 0
..................................................................................................................................CACGCTTTGCCACTACGACT..................................................................................................... 20 0 6 0.17 1 1 0 0 0
.........................................AGAAAACTAATGGTGGTA................................................................................................................................................................................................ 18 0 6 0.17 1 0 0 0 1
...................................................TGGTGGTACCGCTGGGTGAG.................................................................................................................................................................................... 20 1 6 0.17 1 0 1 0 0
..................................CGTTAAAAGAAAACTAGTGGT.................................................................................................................................................................................................... 21 1 6 0.17 1 1 0 0 0
.................................GCGTTAAAAGAAAACTAA........................................................................................................................................................................................................ 18 0 6 0.17 1 0 0 1 0
.......................................AAAGAAAACTAATGGTGGT................................................................................................................................................................................................. 19 0 6 0.17 1 0 0 1 0
...................................................TGGTGGTGCCGCTGGGTGAGGT.................................................................................................................................................................................. 22 2 6 0.17 1 0 1 0 0
.......................................................GGCAACCCTGGATGAGGTCG................................................................................................................................................................................ 20 3 7 0.14 1 0 0 1 0
...............................................................................................................GGTGCCTGCTGTGGCCTTAC........................................................................................................................ 20 0 7 0.14 1 0 0 1 0
........................................................GGAACCCTGGATGAGGTCG................................................................................................................................................................................ 19 3 19 0.05 1 0 0 1 0
...............................................................................................................TGTGGCTGCTGTGACCTTA......................................................................................................................... 19 3 20 0.05 1 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_1:7815406-7815656 + dse_681 CTTTTTTGTTAATCCTAAACGT------AAAAAGTAAT-------ACGCAATTTTCTTTTGATTAC---CACCATGGCGACCTACTCC----AGCATTAGCTGCTCTCCCACATGCGCAACTTCTTCATATCCACGGACGACACCGGAATGTGCGAAACGGTGATGCTGAGCGAACAAGTCCTTCACGCAGCAGAGGAACATGAAGCGTTCC--------------------------------------------TTCCTGGAGTGGCGCAACCGGATGCCTGGTGTTTCGCTCCGGCGTTGTCCCGCCCCCCG
droSim2 2r:11004821-11005110 + ---------------------TATAAATAGAAATTAATTTGGGAAAAGCTATTTTCTTTTGTTTAC---CACTATGGCGCCCCACTCCAACCAGCATTGGCTGCTCTCCCACATCCGCAACTCCTTCATATCAACGGACGACACCGGAATGTGCGAAACGGTGATGCTGAGCGAACAAGTCCTTCACGCAGCAGAGCAACATGAAGCGTTCCTCGTCGTCGCTGAGTTCCAGTCCCGAATAGCAGATAAAGTCAACTTCCTGGAGTGGCGCAACCGGATGCCGGGTGTTTCGCTCCGGCGTTGTTCCGCCCCCC-
dm3 chr2R:10299392-10299512 + --------------------------------------------------ATTTTCTTTTGTTTAC---TACCATGGCGACCTACTCCAACCAGCATTGGCTGCTCTCCCACATCCGCAACTCCTTCATATCCACGGACGACACCGGAATGTGCGAGACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droEre2 scaffold_4845:15545603-15545746 - ---------------------T------AGAAATTAATTTCGGAAAAGCGACTTTCTTTTGTTTAC---CACCATGGCGACCTACTCCAACCAGCATTGGCTGCTCTCCCACATCCGCAACTCCTTCATATCCACGGACGACACGGGAATGTGCGAGACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droYak3 2R:10232409-10232552 + ---------------------T------AGAAATTAATTTCGGAAAAGCGACTTTCTTTTGTTTAC---CACCATGGCCACCTACTCCAATCAGCACTGGCTGCTCTCCCATATCCGCAACTCCTTCATATCCACAGACGACACCGGAATGTGCGAGACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000409462:2545366-2545509 - ---------------------T------AGAAATTAATTTCGGAAAAGCGATTTTCTTTTGTTTAC---CATCATGGCCACCTATTCCAATCAGCACTGGCTGCTCTCCCATATCCGGAACTCCTTTATCTCCACGGACGACACCGGAATGTGTGAAACCGTTATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301754:2355568-2355691 - -----------------------------------------------GCGATTTTCTTTTGTTTAC---CACCATGGCCACCTATTCCAATCAGCACTGGCTGCTCTCCCACATTCGCAACTCCTTCATCTCCACGGACGACAGCGGAATGTGCGAGACGGTGATGTTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droTak1 scf7180000415272:145975-146101 + -----------------------------------------------GCGATTTTCTTTTGTTTACCACCACCATGGCCACCTACTCCAACCAGCACTGGCTGCTCTCCCACATCCGCAACTCCTTCATCTCCACGGACGACTCGGGCATGTGCGAGACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000491349:565117-565260 - ---------------------T------AGAAAATAATTTCGGAAAAGCGATTTTCTGTTGTTTAC---CACCATGGCCACCTATTCCAATCAGCACTGGCTGCTCTCCCACATCCGCAACTCCTTCATCTCCACGGACGACTCGGGCATGTGTGAAACAGTGATGCTCAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droRho1 scf7180000779318:121587-121730 + ---------------------T------AGAAATTAATTTTGGAAAAGCGATTTTCTTTTGTTTAC---CACCATGGCCACCTATTCCAATCAGCACTGGCTGCTTTCCCACATCCGGAACTCCTTCATCTCCACGGATGACACGGGCATGTGTGAAACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000453215:851963-852086 + -----------------------------------------------GCGATTTTCTTTTGTTTAC---CGCCATGGCTACCTACTCCAATCAGCATTGGCTGCTCTCCCACATCCGCAACTCCTTTATCTCCACGGACGACACCGGGATGTGCGAAACGGTGATGCTGAGTGA---------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302411:182835-182952 - -----------------------------------------------------TTCGTTTGTTTAC---CGCCATGGCCACCTACTCCAACCAGCACTGGTTGCTCTCCCACATCCGGAACTCGTTCATCTCCACGGACGACACGGGCATGTGCGAGACTGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13266:14641184-14641288 + ---------------------------------------------------------------------CATCATGGCCACCTACTCCAATCAGCACTGGCTGCTTTCGCACATCCGCAACTCTTTCATCTCCACGGATGAGACTGGCATCTGCGAGACGGTGATGTTAAGTGA---------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000396428:184460-184565 - -----------------------------------------------------------------C---CATCATGGCCACCTACTCCAATCAGCACTGGCTGCTATCGCACATCCGCAACTCCTTCATATCCACGGACGAGACTGGCATCTGTGAGACGGTAATGCTAAGTGA---------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:4383370-4383509 - ---------------------A--------AAAGTAATTTACAAAAATAAA--ACCATTTGTCTTC---AAACATGGCCACCTACTCAAACCAGCATTGGCTGCTGTCCCACATACGCAACTCCTTCATCTCAACCGACGACACCGGGATGTGCGAGACCGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_2:4571279-4571418 - ---------------------A--------AAAGTAATTTACAAAAATAAA--ACCATTTGTCTTC---AAACATGGCCACCTACTCAAACCAGCATTGGCTGCTGTCCCACATACGCAACTCCTTCATCTCAACCGACGACACCGGGATGTGCGAGACCGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004513:3544867-3544967 - -------------------------------------------------------------------------ATGGCCACCTATTCCAATCAGCACTGGCTATTGTCCCACATACGCAACTCCTTCATATCCACCGATGACACTGGCATGTGCGAAACTGTGATGCTCAGCAA---------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12875:13609578-13609678 + -------------------------------------------------------------------------ATGGCCACCTATTCCAACCAGCACTGGCTTCTCTCGCACATACGCAACTCATTCATTTCCACGGATGACACGGGCATATGCGAGACCGTAATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:9029389-9029489 + -------------------------------------------------------------------------ATGGCCACGTATTCCAATGCGCACTGGCTCCTCTCGCACATACGCAACTCATTCATCTCCACAGATGATACGGGCATATGCGAGACCGTAATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:17620828-17620928 - -------------------------------------------------------------------------ATGGCCACCTATTCCAACCAGCACTGGCTGCTCTCGCACATCCGCAACTCGTTCATATCGACGGACGACACGGGCATCTGCGAGACGGTGATGCTCAGCGA---------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CTTTTTTGTTAATCCTAAACGT------AAAAAGTAAT-------ACGCAATTTTCTTTTGATTAC---CACCATGGCGACCTACTCC----AGCATTAGCTGCTCTCCCACATGCGCAACTTCTTCATATCCACGGACGACACCGGAATGTGCGAAACGGTGATGCTGAGCGAACAAGTCCTTCACGCAGCAGAGGAACATGAAGCGTTCC--------------------------------------------TTCCTGGAGTGGCGCAACCGGATGCCTGGTGTTTCGCTCCGGCGTTGTCCCGCCCCCCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................TTTTGATTAC---CACCATGGCGA...........................................................................................................................................................................................................................................2160.5031101
...........................................................................................................................................................................CGAACAAGTCCTTCACGCAGC...........................................................................................................................2140.5020002
..................................................................................................................................................GAATGTGCGAAACGGTGATGC....................................................................................................................................................2160.5030102
.........................................................TTTGATTAC---CACCATGGCGACC.........................................................................................................................................................................................................................................2240.5021100
....................................................................................................................................................ATGTGCGAAACGGTGATGCTGT.................................................................................................................................................2260.3320101
.............................................................................CGACCTACTCC----AGCATTAGCTG....................................................................................................................................................................................................................2240.2511000
........................................................TTTTGATTAC---CACCATGGCGAC..........................................................................................................................................................................................................................................2240.2510100
.........................................................................................................................................................................................................................................................................TGGCGCAACCGGATGCCTGGT.............................2140.2510001
.................................................................................................TAGCTGCTCTCCCACATGCGC.....................................................................................................................................................................................................2140.2510010
............................................................................GCGACCTACTCC----AGCATTAGC......................................................................................................................................................................................................................2140.2511000
..........................................................TTGATTAC---CACCATGGCGACC.........................................................................................................................................................................................................................................2140.2510100
........................................................................................................................CTTCTTCATATCCACGGACGA..............................................................................................................................................................................2140.2511000
......................................................................ACCATGGCGACCTACTCC----AGC............................................................................................................................................................................................................................2140.2511000
.........................................................TTTGATTAC---CACCATGGCGAC..........................................................................................................................................................................................................................................2140.2510100
.................................................................................................................................................................TGATGCTGAGCGAACAAGTT......................................................................................................................................2040.2510001
..........................................................................................................................................................................................CGCAGCAGAGGAACATGAAGC............................................................................................................2140.2510001
...............................................................TAC---CACCATGGCGACCTACTCC----...............................................................................................................................................................................................................................2240.2511000
....................................................................................................................................................ATGTGCGAAACGGTGATG.....................................................................................................................................................1860.1710001
...................................................................................................................................................AATGTGCGAAACGGTGATGT....................................................................................................................................................2060.1710100
.....................................................TTCTTTTGATTAC---CACCATGG..............................................................................................................................................................................................................................................2160.1711000
....................................................TTTCTTTTGATTAC---CACCATGG..............................................................................................................................................................................................................................................2260.1711000
.......................................................................................................................................................TGCGAAACGGTGATGCTGAGC...............................................................................................................................................2160.1710001
......................................................TCTTTTGATTAC---CACCATGGTT............................................................................................................................................................................................................................................2260.1711000
..................................................ATTTTCTTTTGATTAC---CACCA.................................................................................................................................................................................................................................................2160.1711000
....................................................................................................................................................ATGTGCGAAACGGTGATGCTG..................................................................................................................................................2160.1710001
....................................................................................................................................................ATGTGCGAAACGGTGATGCTGTT................................................................................................................................................2360.1710100
.......................................................CTTTTGATTAC---CACCATGGC.............................................................................................................................................................................................................................................2060.1711000
.......................................................CTTTTGATTAC---CACCATGGCG............................................................................................................................................................................................................................................2160.1710001
...................................................................................................................................................AATGTGCGAAACGGTGATG.....................................................................................................................................................1960.1711000
....................................................................................................................................CACGGACGACACCGGAATG....................................................................................................................................................................1970.1410001
............................................................................................................................TTCATATCCACGGACGACACC..........................................................................................................................................................................2170.1410001
.............................................................................................................................................................................................AGCAGAGGAACATGAAGC............................................................................................................1890.1110010
droSim2
---------------------TATAAATAGAAATTAATTTGGGAAAAGCTATTTTCTTTTGTTTAC---CACTATGGCGCCCCACTCCAACCAGCATTGGCTGCTCTCCCACATCCGCAACTCCTTCATATCAACGGACGACACCGGAATGTGCGAAACGGTGATGCTGAGCGAACAAGTCCTTCACGCAGCAGAGCAACATGAAGCGTTCCTCGTCGTCGCTGAGTTCCAGTCCCGAATAGCAGATAAAGTCAACTTCCTGGAGTGGCGCAACCGGATGCCGGGTGTTTCGCTCCGGCGTTGTTCCGCCCCCC-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................TTCACGCAGCAGAGCAACATG................................................................................................................2112.00200000100000001000
...................................................................................................................................................................................................................................................................CTGGAGTGGCGCAACCGGATG...................................2112.00200000000000002000
.......................................................................................................................................................TGCGAAACGGTGATGCTGAGC...............................................................................................................................................2122.00400000000000013000
.......................................................................................................................................................................................TCACGCAGCAGAGCAACATGAA..............................................................................................................2212.00200000000000002000
.........................................................................................................................................................................................................TGAAGCGTTCCTCGTCGTCG..............................................................................................2012.00200000000101000000
.........................................................................................................................................................................................................TGAAGCGTTCCTCGTCGTCGC.............................................................................................2112.00200000000020000000
...............................................................................................................................................CCGGAATGTGCGAAACGGTGA.......................................................................................................................................................2122.00400000030000001000
...........................................................................................................................................................................................................................................................TCAACTTCCTGGAGTGGCGCA...........................................2111.00100010000000000000
...................................................................................................................................................................................TCCTTCACGCAGCAGAGCAACA..................................................................................................................2211.00100000100000000000
.............................................................................................................................................................................AACAAGTCCTTCACGCAGCA..........................................................................................................................2011.00100001000000000000
....................................................................................................................................................................................................................................................................TGGAGTGGCGCAACCGGA.....................................1811.00100000000001000000
....................................................................................................................................................................TGCTGAGCGAACAAGTCCTTCACGC..............................................................................................................................2511.00100000000001000000
....................................................................................................................................................................................................................................................................TGGAGTGGCGCAACCGGATT...................................2011.00100000000000001000
......................................................................................................................................................................................TTCACGCAGCAGAGCAACATGAAGCGTT.........................................................................................................2811.00100000000001000000
..................................................................................................................................TCAACGGACGACACCGGAATGTGCGA...............................................................................................................................................................2611.00100000010000000000
.......................................................................................................................................................................................TCACGCAGCAGAGCAACATGA...............................................................................................................2111.00100001000000000000
.................................................................................................TGGCTGCTCTCCCACATCC.......................................................................................................................................................................................................1921.00200000200000000000
......................................................................................................................................................................................TTCACGCAGCAGAGCAACA..................................................................................................................1911.00100000100000000000
..............................................................................................................................................................................................................CGTTCCTCGTCGTCGCTGAGT........................................................................................2111.00100001000000000000
........................................................................................................................................................................................CACGCAGCAGAGCAACATGAA..............................................................................................................2111.00100000000000100000
.......................................................................................................................................................................................TCACGCAGCAGAGCAACATG................................................................................................................2011.00100000100000000000
...................................................................................................................................................................ATGCTGAGCGAACAAGTCCTT...................................................................................................................................2121.00200000000000002000
...............................................................................................................................................................................................CAGAGCAACATGAAGCGTTCC.......................................................................................................2111.00100001000000000000
.................................................................................................TGGCTGCTCTCCCACATC........................................................................................................................................................................................................1821.00200000200000000000
.............................................................................................................................................................................AACAAGTCCTTCACGCAG............................................................................................................................1811.00100000100000000000
............................................................................................................................................ACACCGGAATGTGCGAAACGG..........................................................................................................................................................2120.50100000000000001000
...........................................................................................................................................................AAACGGTGATGCTGAGCGAAC...........................................................................................................................................2120.50101000000000000000
...............................................................................................................................................................................................................GTTCCTCGTCGTCGCTGA..........................................................................................1820.50101000000000000000
.............................................................................................................................................CACCGGAATGTGCGAAACGGT.........................................................................................................................................................2120.50100000000000001000
...............................................................................................................................................CCGGAATGTGCGAAACGGTG........................................................................................................................................................2020.50100000000000001000
.............................................................................................................................................CACCGGAATGTGCGAAACGGTGATGCTG..................................................................................................................................................2820.50100010000000000000
.......................TAAATAGAAATTAATTTGGGA...............................................................................................................................................................................................................................................................................2120.50100000000100000000
...............................................................................................ATTGGCTGCTCTCCCACATCCGCAACT.................................................................................................................................................................................................2720.50100000010000000000
........................................................................................................................................GACGACACCGGAATGTGCGAC..............................................................................................................................................................2120.50100000000000001000
............................................................................................................................................................AACGGTGATGCTGAGCGAACAAGTCC.....................................................................................................................................2620.50100000010000000000
............................................................................................................................................................................................................AGCGTTCCTCGTCGTC...............................................................................................1620.50100000000001000000
dm3
--------------------------------------------------ATTTTCTTTTGTTTAC---TACCATGGCGACCTACTCCAACCAGCATTGGCTGCTCTCCCACATCCGCAACTCCTTCATATCCACGGACGACACCGGAATGTGCGAGACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................TGTGCGAGACGGTGATGCTGA.................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001001000000000000000001000000000000000000000
..................................................................................................................CCGCAACTCCTTCATATCCAC....................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TCCTTCATATCCACGGACGACACCGGAA......................................................................................................................................................................2813.0030000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................CGCAACTCCTTCATATCCACG...................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TGTGCGAGACGGTGATGCTGAG................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.........................................................................................................................................ACGACACCGGAATGTGCGAGA.............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TGCGAGACGGTGATGCTG..................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................GGCGACCTACTCCAACCAGCA...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ATGTGCGAGACGGTGATGCTGAGCG..............................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
................................................................................................................................TATCCACGGACGACACCGGAATGTGC.................................................................................................................................................................2611.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TGTGCGAGACGGTGATGCTGAGC...............................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................CCTTCATATCCACGGACGACACCGGA.......................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................CCATGGCGACCTACTCCAACCAGC............................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TTTGTTTAC---TACCATGGCGACC.........................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................TCCAACCAGCATTGGCTGCTCTCC..............................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................TTCTTTTGTTTAC---TACCATGGCGACC.........................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................TTGGCTGCTCTCCCACATCCGCAACTCC...............................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................TCCCACATCCGCAACTCCTTCATAT........................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................CTCCCACATCCGCAACTCCTTCATATC.......................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................TCCTTCATATCCACGGACGACACCGG........................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................ACGACACCGGAATGTGCGAGACGG..........................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TTTGTTTAC---TACCATGGCGACCTA.......................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TCTCCCACATCCGCAACTCCTTCATA.........................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................GCGAGACGGTGATGCTGAGC...............................................................................................................................................2011.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TCCACGGACGACACCGGAATGTGCGA...............................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................TCCACGGACGACACCGGAA......................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.............................................................................................................................................CACCGGAATGTGCGAGACGG..........................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................CATATCCACGGACGACACCGGAATG....................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................ACCGGAATGTGCGAGACGGTGATC.....................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................GACGACACCGGAATGTGCGAGAC............................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TGTGCGAGACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................TTAC---TACCATGGCGACCTACTCC...................................................................................................................................................................................................................................2311.0010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................GACGACACCGGAATGTGCGAGA.............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................ACCTACTCCAACCAGCATTGGCTGCTCTCC..............................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................CTTCATATCCACGGACGA..............................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TATCCACGGACGACACCGGAATGTGCGC...............................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
droEre2
---------------------T------AGAAATTAATTTCGGAAAAGCGACTTTCTTTTGTTTAC---CACCATGGCGACCTACTCCAACCAGCATTGGCTGCTCTCCCACATCCGCAACTCCTTCATATCCACGGACGACACGGGAATGTGCGAGACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
---------------------T------AGAAATTAATTTCGGAAAAGCGACTTTCTTTTGTTTAC---CACCATGGCCACCTACTCCAATCAGCACTGGCTGCTCTCCCATATCCGCAACTCCTTCATATCCACAGACGACACCGGAATGTGCGAGACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................AATTAATTTCGGAAAAGC..........................................................................................................................................................................................................................................................................1811.00110000000000
..............................AAATTAATTTCGGAAAAGC..........................................................................................................................................................................................................................................................................1911.00100100000000
droEug1
---------------------T------AGAAATTAATTTCGGAAAAGCGATTTTCTTTTGTTTAC---CATCATGGCCACCTATTCCAATCAGCACTGGCTGCTCTCCCATATCCGGAACTCCTTTATCTCCACGGACGACACCGGAATGTGTGAAACCGTTATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
-----------------------------------------------GCGATTTTCTTTTGTTTAC---CACCATGGCCACCTATTCCAATCAGCACTGGCTGCTCTCCCACATTCGCAACTCCTTCATCTCCACGGACGACAGCGGAATGTGCGAGACGGTGATGTTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
-----------------------------------------------GCGATTTTCTTTTGTTTACCACCACCATGGCCACCTACTCCAACCAGCACTGGCTGCTCTCCCACATCCGCAACTCCTTCATCTCCACGGACGACTCGGGCATGTGCGAGACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
---------------------T------AGAAAATAATTTCGGAAAAGCGATTTTCTGTTGTTTAC---CACCATGGCCACCTATTCCAATCAGCACTGGCTGCTCTCCCACATCCGCAACTCCTTCATCTCCACGGACGACTCGGGCATGTGTGAAACAGTGATGCTCAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
---------------------T------AGAAATTAATTTTGGAAAAGCGATTTTCTTTTGTTTAC---CACCATGGCCACCTATTCCAATCAGCACTGGCTGCTTTCCCACATCCGGAACTCCTTCATCTCCACGGATGACACGGGCATGTGTGAAACGGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
-----------------------------------------------GCGATTTTCTTTTGTTTAC---CGCCATGGCTACCTACTCCAATCAGCATTGGCTGCTCTCCCACATCCGCAACTCCTTTATCTCCACGGACGACACCGGGATGTGCGAAACGGTGATGCTGAGTGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
-----------------------------------------------------TTCGTTTGTTTAC---CGCCATGGCCACCTACTCCAACCAGCACTGGTTGCTCTCCCACATCCGGAACTCGTTCATCTCCACGGACGACACGGGCATGTGCGAGACTGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
---------------------------------------------------------------------CATCATGGCCACCTACTCCAATCAGCACTGGCTGCTTTCGCACATCCGCAACTCTTTCATCTCCACGGATGAGACTGGCATCTGCGAGACGGTGATGTTAAGTGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................GACTGGCATCTGCGAGACGGT.........................................................................................................................................................2111.001000010
............................................................................................................................TTCATCTCCACGGATGAGACTGG........................................................................................................................................................................2311.001100000
droBip1
-----------------------------------------------------------------C---CATCATGGCCACCTACTCCAATCAGCACTGGCTGCTATCGCACATCCGCAACTCCTTCATATCCACGGACGAGACTGGCATCTGTGAGACGGTAATGCTAAGTGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
---------------------A--------AAAGTAATTTACAAAAATAAA--ACCATTTGTCTTC---AAACATGGCCACCTACTCAAACCAGCATTGGCTGCTGTCCCACATACGCAACTCCTTCATCTCAACCGACGACACCGGGATGTGCGAGACCGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................ACCGACGACACCGGGATG....................................................................................................................................................................1811.0010100000000
............................................................................................................................................ACACCGGGATGTGCGAGACC...........................................................................................................................................................2011.0010100000000
droPer2
---------------------A--------AAAGTAATTTACAAAAATAAA--ACCATTTGTCTTC---AAACATGGCCACCTACTCAAACCAGCATTGGCTGCTGTCCCACATACGCAACTCCTTCATCTCAACCGACGACACCGGGATGTGCGAGACCGTGATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.....................................................................................................................................................TGTGCGAGACCGTGATGCTGAGCG..............................................................................................................................................2412.002200000
droWil2
-------------------------------------------------------------------------ATGGCCACCTATTCCAATCAGCACTGGCTATTGTCCCACATACGCAACTCCTTCATATCCACCGATGACACTGGCATGTGCGAAACTGTGATGCTCAGCAA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
-------------------------------------------------------------------------ATGGCCACCTATTCCAACCAGCACTGGCTTCTCTCGCACATACGCAACTCATTCATTTCCACGGATGACACGGGCATATGCGAGACCGTAATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................ATATGCGAGACCGTAATGCT...................................................................................................................................................2011.001010000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................ATATGCGAGACCGTAATGCTGAG................................................................................................................................................2311.001000000000000000000000000000000000010000000000000000000000000000
droMoj3
-------------------------------------------------------------------------ATGGCCACGTATTCCAATGCGCACTGGCTCCTCTCGCACATACGCAACTCATTCATCTCCACAGATGATACGGGCATATGCGAGACCGTAATGCTGAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................ATGCGAGACCGTAATGCTGAG................................................................................................................................................2111.001100000
droGri2
-------------------------------------------------------------------------ATGGCCACCTATTCCAACCAGCACTGGCTGCTCTCGCACATCCGCAACTCGTTCATATCGACGGACGACACGGGCATCTGCGAGACGGTGATGCTCAGCGA---------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:33 PM