ID:

dse_664

 Coordinate:

scaffold_1:6381036-6381268 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [Dsec\GM20318-cds]; exon [dsec_GLEANR_3139:2]; CDS [Dsec\GM20318-cds]; exon [dsec_GLEANR_3139:1]; intron [Dsec\GM20318-in]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTTGTCTCAGTCTCAGAAAACAACAGCAACAACACCAACAACAGCAGAGGTACCAACTAATGCTGATAAAATGCAAAAGCAACAGCAACTAAAGCAGCAACTTTTTGCTGCCTGCAGCATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGCGAATGAAGCGTTAGCAGAACCAGCAACAACAACAGCAGCAACACTTGCCACCGGCAAAGCAGCAAAAACAATATTAGAAAACGGCATAAGAAGGGAATCCTCGCCTCCGCTGTCGAATCCATTGAGGCCTCCTCCTCATCGTCATCCTCCTCCTCGTCATCCTCCTCCTCGTCATC
**************************************************...........(((((......(((..........))).......)))))..((((((((((((((................(((....)))....((.....((((.((((...)))).)))).....))..........))))......(((((...))))).)))))))))).............(((((...((.((((....)).))))...)))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V113
male body		 V114
embryo
...............................................................................................................................................................................................................................................GGCATCAGTAGGGAATCTTC.......................................................................... 20 3 5 0.20 1 0 1 0
..................................................................................................................................................................................................................GCAAAGCAGCAAAGAGGATAT...................................................................................................... 21 3 6 0.17 1 1 0 0
...........................................................................................................................................................................................................................................................................GGTCGAGTCCATTTAGGCC............................................... 19 3 12 0.08 1 1 0 0
...............................................................................................................CCTTCAGCATTAAAGAGAAA.......................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 1

Anti-sense strand reads

GAAACAGAGTCAGAGTCTTTTGTTGTCGTTGTTGTGGTTGTTGTCGTCTCCATGGTTGATTACGACTATTTTACGTTTTCGTTGTCGTTGATTTCGTCGTTGAAAAACGACGGACGTCGTAATTTCATTTTTCACTTTTGTGTAATCGTTGATGACGCTTACTTCGCAATCGTCTTGGTCGTTGTTGTTGTCGTCGTTGTGAACGGTGGCCGTTTCGTCGTTTTTGTTATAATCTTTTGCCGTATTCTTCCCTTAGGAGCGGAGGCGACAGCTTAGGTAACTCCGGAGGAGGAGTAGCAGTAGGAGGAGGAGCAGTAGGAGGAGGAGCAGTAG
**************************************************...........(((((......(((..........))).......)))))..((((((((((((((................(((....)))....((.....((((.((((...)))).)))).....))..........))))......(((((...))))).)))))))))).............(((((...((.((((....)).))))...)))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V115
head
 M054
female body
 V113
male body
.................................................................................................................................................................................................................................................................................................AGGAGTAGCAGTAGGAGGA......................... 19 0 2 0.50 1 1 0 0
.........................TCGTTGTTGTGGCTGTTGT................................................................................................................................................................................................................................................................................................. 19 1 6 0.17 1 0 1 0
.................................GTGGTAGTTGGCGTCTCC.......................................................................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 1 0
........................................................................................................................................................................................................................................................................................................................CAGTAGGAGGAGGAGGAGTA. 20 1 10 0.10 1 0 0 1
.........................................................................................................................................................................................................................................................................................................CAGTAGGAGGAGGAGGAGTA................ 20 1 10 0.10 1 0 0 1
...................................................................................................................................................................................CGTTGTTGTTGTCGTCGTT....................................................................................................................................... 19 0 20 0.05 1 0 1 0
.........................................................................................................................................................................................................................................................................CGTCAGGTTAGGTAATTCC................................................. 19 3 20 0.05 1 0 0 1
...........................GTTGTTGTGGCTGTTGTCGA.............................................................................................................................................................................................................................................................................................. 20 2 20 0.05 1 0 1 0
.........................................................................................................................................................................................................................................................................GGTCAGGTTAGGTAACTCC................................................. 19 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_1:6380986-6381318 - dse_664 CTTTGTCTCAG-TCTCAGAAAACAACAGC-------------------AACAACACCAACAACAG---------C------------------------------------------------------------AGAGGTACCAACTAAT---------------------GCTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTAAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGC---------------------------------GAATGAAG---------------------CGT------TAGCAGAACCAGCA------ACA------ACAAC---AGCAGC---AACACTTGCCACC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACGG---CATAAGAAGGGAATCCTCGCCTCCG-C-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCATT------------GAGGCCT---CCTCCTCATCGTCATCCTCCTCCTCGTCATCCTCCTCCTCGTCATC
droSim2 2r:9544194-9544557 - CTTTGTCTCAG-TCTCAGAAAACAACAGC-------------------AACAACACC---------------AACGACGACG------ACAACAACAAC---AGCAGCAGCAG---------------CAGCAGCAGAGGCAACAACTAAT---------------------GCTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTGAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGC---------------------------------GAATGCAG---------------------CGT------TAGCAGCAGCAACAACAACA---ACAACAACAACAACAGCAACACCAACACTTGCCACC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACGG---CATCAAGAAGGAATCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCGTT------------GAGGCCT---CCTCCTCATCGTCA---------------TCCTCCTCCTCGTCATC
dm3 chr2R:8865097-8865454 - CTTTGTCTCAG-TCTCAGAAAACAACAAC-------------------AACAACAAC---------ACCACCAACGACGACG------ACAACAACAAC---AGCAGCAG------------------CAGCAGCAGAGGCAACAACTAAT---------------------GCTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTGAAGCAG----------CAACTTTTCGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGC---------------------------------GAATGCAG---------------------CAT------TAGCAGCAGCAACA---------ACCACAACAACAACAGCAACACCAGCACTTGCCACC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACGG---CATAAAGAAGGAATCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCGTT------------GAGGCCT---CCTCCTCATCGTCA------------------TCCTCCTCCTCGTC
droEre2 scaffold_4845:16957071-16957437 + CTTTGTATCAG-TCCCAGAAAACAACAAC-------------------AGCAACAGC---------------AGCGACGACA------ACAACAACAACACCAGTAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCAGAGGCAACAACTAAT---------------------GCTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTGAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGC---------------------------------AAATGCAG---------------------CAA------CA---------------------------GCGGC---AGCAAC---ACCACTTGCCACC---GGCAAAG---------------TGGCAAAAACAATATTAGAGAACGG---CATCAAGAAGGAAACTACGCCTCCAGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCATT------------GAGGCCT---CCTCCTCATCGTCATCCTCCTCATCCTCGTCCTCATCCTCGTCCTC
droYak3 2R:8102357-8102720 + CTTTGTATCAG-TCCCAGAAAACAACAAC-------------------AATAACT------------------GCGACGACG------ACAACAACAACACCAGCAGCAGCAGCAG------------AAACAGCAGAGGCAACAACTAAT---------------------GCTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTGAAGCAG----------CTACTTTTTGC----CGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGC---------------------------------GAATGCAG---------------------CAG------CAGCAGCAGCAGCA---------ACAACAGCAACAGCAGCAAC---ACAACTTGCCACG---GGCAAAG---------------CGGCAAAAACAATATTAGAAAACGG---CATCAAGAAGGAATCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCGTT------------GAGGCCT---CCTCCTCATCTTCATCCTCC---------TCCTCCTCGTCCTCCTC
droEug1 scf7180000409672:3755520-3755805 + CTTTGTCTC-------AGAAAACAACAAC-------------------AACAACAGC---------------------A---------------------------------------------------------GCAGCAACAACGAAC------------------GGCGTTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTAAAGAAT----------CAACTTTTTGC----TGCCTGTAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCGACA------------------------------------AATG------------------------------------------------------------------T---TGCAGC---AATACTTGCCACC---GGCAAAG---------------TGGCAAAAACAATATTAGAAAATGG---CATCAAGAAGGAATCAACGCCTCCGGTAACAAC---GAATGC--------------------------------------------------------------------------------------T---------------------------------GT---------------------T-GA----------ATCAGTT------------GAGGCAT---CTTCA---------TCCTCC---------TCCTCTTCGTCTTCATC
droBia1 scf7180000302292:1923450-1923759 - CTTTGTCTC-------AGAAAGCAGCCAC-------------------AGCAACAGCAACAGCAA---------C---AGCGGCAGC---------------------------------------GACAACTGCGGCAGCAACAACTAAT------------------------G---ATAAAATGCAAAAGCAAC------------AGCA-------------GCTAAAGCAG----------CAACTTTTTGC----CGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTAC------------------------------------------------------------------------A---------------------------GCGGC---TGCAAC---AACACTTGCCACC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACAG---CATCAAGAAGGAATCGACGCCTCCGGG-----------------------------------------------------------------------------------------------------A---------------------------------GC---------------------G-GA----------GTCCCTTGAGAACGCCGC---CGCCT---CCTCCTCTTCATCA---------------TCCTCCTCCTCCTCCAC
droTak1 scf7180000415762:248191-248512 + CTTTGTCTC-------AGAAATCAACAAC-------------------AGAAACAAC------AA---------C---A---------------------------------------------------------GCTGCACCAACTAAT---------------------GTTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTAAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTAC---------------------------------AACGGCT---------------------------------------------------GCA------ACAAC---AACAAC---AACACTTGCCACC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACAG---CATCAAGAAGGAATCAACGCCTCCGGTGACGACGACAAATGC--------------------------------------------------------------------------------------C---------------------------------GT---------------------T-GA----------ATGCGCT------------GAGGCAGCCAACTCCACCTCCTCCTCATCATCTTCTTCATCCTCCTCCTCCTCATC
droEle1 scf7180000491215:173885-174170 + CTTTGTCTC-------AGAAAACAG-------------------------------------------------------------------------------------------------------------------CAACAACTAAT---------------------GTTG---ATAAAATGCAAAAGCAAC------------ATCA-------------ACTGAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCTACAGC---------------------------------------------------------------------------AGCAGCA---------ACT------ACAAC---TGCAAC---AACACTTGCCCCC---GGTAAAG---------------CAGCAAAAACAATATTAGAAAACAG---CATCAAGAAAGAATCAACGCCTCCGGCCAC------GAATGC--------------------------------------------------------------------------------------C---------------------------------GT---------------------C-GA----------TGCCAAT------------GAGGCAT---CTTCCTCATCATCGTCCTCC------TCCTCATCGTCTTCGTCGTC
droRho1 scf7180000779957:25839-26118 + CTTTGTCTC-------AGAAAACAG-------------------------------------------------------------------------------------------------------------------CAACAACTAAT---------------------GTTG---ATAAAATGCAAAGGCAAC------------ACCA-------------AATGAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCTACAGC---------------------------------A------------------------------G------TAGCAGCAGTA---------ACT------ACAAC---TGCAAC---AACACTTGCCCCC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACAG---CATCAAGAAGGAATCAACGCCTCCGGCCAC------GAATGC--------------------------------------------------------------------------------------C---------------------------------GT---------------------C-GA----------TTCCAAT------------GAGGCCT---CATCCTCATCATCA------------------TCCTCATCGTCATC
droFic1 scf7180000454066:400599-400926 + CTTTGTCTC-------AGAAAACAGAAAC-------------------AGAAACAGA------AA---------C---G---------------------------------------------------------GCAGCAGCAACTAAT---------------------GTTG---ATAAAATGCAAAAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA-GCAACTGAAGCAG----------CAACTTTTTAC----CGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACGCATTAGCAGCTACA------------------------------------------------------------------------------------------------ACTACAACGACAAATGCAAC---AGAACTTGCCCCA---GGGAAAG---------------CGGCAAAAACAATATTAGAAAACAG---CATGCAGAAGGAATCAACGCCTCCGGTCAT------GAATGC--------------------------------------------------------------------------------------C---------------------------------GT---------------------C-GA----------ATCCGTT------------GAGGCCT---CCTCCTCATCATCATCCTCC------TCCTCCTCCTCCTCCTCGTC
droKik1 scf7180000302639:466735-467029 + CTTTGTCTC-------AGAAAACAGCAAC----------------------------------------------------------------------------------------------------------------ACCAACTAAT---------------------GTTG---ATAAAATGCACAAGCAAC------------AA----------------------CAG----------CAACTTATTGC----TGCCAGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACAACGGC---------------------------------AACAGCA---------------------------------------------------ACA------GCAAC---AGCAACAGCACAACTTGCCACCAGCGGCAAGG---------------CGGCAAAAACAATATTAGAAAAAAGAAACATCAAGAAGGAATCAACGCCACCGGCCAC------GAGTGCTACTGCCTCGAC--------------------------------------------------------------------------T---------------------------------GT---------------------G-GA----------ATCCGTT------------GAGGCCA---CCTCATC------ATCCTGC------TTCTCGTCCTCTTCCTCCAC
droAna3 scaffold_13266:6334746-6335037 - CTTTGTCTC-------ACAAGCCAACTTCTGCAACA-------CAAGCAGCAACACTAACAACAA---------C---A---------------------------------------------------------ACAACAACAACTAAT---------------------GTTGCTAATAAAATGCAACAACAAC------------AACA----------ACAACAAAAACAA----------CAAATTTTCAC----AGCCAGCGGC------------------------------GGCATTAAAGTAAAAAGTGAAAACACATTAGCTGCAACA------------------------------------------------------------------C------TCGTCGTAGC---------------------------------------------TGGA---AGCAAA------AACATTGCAACAAAGCAAGTCCTATTGGAGAATGG---CATTAAGAAGGAATCAACGCCACCGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------GAGGCCT---CCTGTTCC------TCCTCC---------TCCTCATCATCCTCATC
droBip1 scf7180000395839:490515-490803 - CTTTGTCTC-------AGAAAGCAACTGC-------------------AGCAACAAA------------------------------------------------------------------------------------AACAACTAAT---------------------GTTG---CTGATAGGCAAAAGCAAC------------AACA-------------AC---ACCAG----------CAACTTTTTCA----AGCCAACGGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCAACA------------------------------------------------------------------------------------------------------------------------CTTCATGCCGCA---AGCAAAGTCAGCAATGTTGCAACAACAAAAACGCTGTTAGAGAATGG---CATTAAGAAGGAATCAACGCCGCCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------A-GAGCAGCAGTCC-ACAGTA------------GAGGCCT---CCACATCATCATCATCCTGC---TCCTCCTCCTCATCCTCCTCATC
dp5 3:5631925-5632259 - CAGCAGCAG-------CAACAGCAGCAGC-------------------AG------C------AA---------CAACAGCAACAGC---------------AACAACAGCAAC-----------------------------------------------------------------------AGCAACAGCAGC------------A----------------GCAACAGCAG----------CAAGTTTTTGC----TGTCAGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCAGTAACAGCAACAGTTGCAACACCAACAACAACAACAACCAATGCAACACCAGCAGCAACGCCAGCAGCAA---------------------------------CAG------------C---AACAGTAG------------CAG---------------CAGCAAAAAGCATGTTAGAAAAGAA---CATCAAGAAGGAATCAACGCCACCGGCAACTACTCCTAATGT--------------------------------------------------------------------------------------C---------------------------------GT---------------------C-GA----------ATCAGTC------------GAGGCCG---CCTCCTC------------CTCCGCCTCATGCTGCTCATCGTCGGC
droPer2 scaffold_2:5826419-5826824 - AGCAGCAAC-------AGCA-GCAACAAC-------------------AG------C------AACAG---CAGCAACAGCA------GCAACAGCAACAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAGCAACAGC--------------------------------------------AACAACAGCAAC------------AGCA-------------GCAGCAGCAG----------CAAGTTTTTGC----TGTCAGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCAGTAACAGCAACAGTTGCAACACCAACAACAACAACAACTAATGCAACACCAGCAGCAACGCCAGCAGCAACAGCAGCAGCAACAGCA---------ACA------GTAGC---AGCAGC---AACAGTAG------------CAG---------------CAGCAAAAAGCATGTTAGAAAAGAA---CATCAAGAAGGAATCAACGCCACCGGCAACTACTCCTAATGT--------------------------------------------------------------------------------------C---------------------------------GT---------------------C-GA----------ATCAGTC------------GAGGCCG---CCTCCTC------------CTCCGCCTCATGCTGCTCATCGTCGGC
droWil2 scf2_1100000004511:5781815-5782122 - CTCCAACAA-------CAACAGCAACAAC-------------------AA------C------AACAT---CATC------AACAGCAGCAACAT---------------CAT--------------------------------------------------------------------CAGCAGCAACAGCAAC------------ACCA-------------ACATCAGCAA----------CA--TTCTCAT----AGTCTTCATC---------------------------------ATCAACAGCAGCAGCAACAAC--AACAACAGCAACAGC---------------------------------------------------------------------------AACAGCAACA---------ACA---ACAAC---AACAAC---AACA-------------------------------------------------------------------ACTT----------------------------------------------------------------------------------------------AGCTGCTCCCTA-------------AGCAATGGTGGAGGTCCTTTGTACACCATCAGCAGTGTGCATCAATTTGGTCCGGCCAGTAACAACAGTTC---CGCC------------TCCGCCT---CCTCCTCCTCCACCACTTCCTCCGCCTCATCCTCCTCATCATCATC
droVir3 scaffold_12963:8170612-8170905 - ACTTGCA---A-TGCCAAAATGCAATTG-------------------------------------------------------------------------------------------------------------------CAATTGCTTTTTCTAACCACACAAAATGCACGC---ACAAACCACAAGAACAAC------------AGCA-------------ACTAGAACAATTCGCATGCCCAGCTGCAAAC----TAGCTACAAC------------------------AACCAC---ACACAGGCCCCAAACAGCGAC-AATTGATTGCGGCAGC---------------------------------------------------------------------------AACACCA---------ACA------ACAAC---GACAAC---AGC-----------------AAG---------------CAGCACGGACAATGACAGCGTACA-----------------------------------------------------------------------------------------------------------AGCGACTT--GTCATCAAC------A---------------------------------TT---------------------C-AC----------ATCCACA------------TCATCAT---CATCATCATCAACATC---CTCCGCATCATCATCATCATCATCAAC
droMoj3 scaffold_6496:3614946-3615238 - ATTAAAGTAAAAAGTGAAAACGCAACAAC-------AGCAACAAC---AA------C------AACAG---CAGC---------------------------------------------------------------------AGCAACT---------------------GTAA---CT--AATGCATTCACAAC------------AACA---ACAGC-AGCAGCAA------------------AGGCTTTGCAGGCTTGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAACA-------ACAACAG---CATTAAGAAAGAAGCAACACCTCCAGCAAC------AACTGC------GGCGGCTGAGGGCTCCACCACCATCACCAACAACAATAACAACAACAACAACAAC-------------AA----------C---------------------------------A----------------------A-CAACAACAGTTC---AGCA------------TTTGCCT---CGTCATGCTCATCATTCTCC---TCCTCATCATCCTCGTCGTCTTC
droGri2 scaffold_15203:7215562-7215861 + CAACAACAA-------CAACAACAACAAC-------------------AA------C------AG---------CAGCAGCTACAATTACAACAA---------------------------------GCAC-----------------------------------------------------AGCAGAAACAAT------------AGCAATAATAGCA------T------G----------CAACAGT--CA----CGCCCACAATGTCTAAGTGAAATCAGATTGAGGC-------------CTGTCAAAACTGGCAGATTATTAACTACGACTGC---------------------------------AACAACAA---------------------CAA------CA---------------------------ACAAC---AGCAAC---AACA---ACC-------ACATAT---------------CTACAACAACAACAACAGCA-ACAA---CAGCAATCG----------------------------------------------------------------------------------------------AATGGCTTTCATCGTCGCCGCTTGGC---------------------------------AG---------------------C-AA----------AACCATCAACGTCGCCGCCGCAGTCG---TCGCCGCAACGTCG------------------TC-----------C

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
CTTTGTCTCAG-TCTCAGAAAACAACAGC-------------------AACAACACCAACAACAG---------C------------------------------------------------------------AGAGGTACCAACTAAT---------------------GCTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTAAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGC---------------------------------GAATGAAG---------------------CGT------TAGCAGAACCAGCA------ACA------ACAAC---AGCAGC---AACACTTGCCACC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACGG---CATAAGAAGGGAATCCTCGCCTCCG-C-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCATT------------GAGGCCT---CCTCCTCATCGTCATCCTCCTCCTCGTCATCCTCCTCCTCGTCATCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droSim2
CTTTGTCTCAG-TCTCAGAAAACAACAGC-------------------AACAACACC---------------AACGACGACG------ACAACAACAAC---AGCAGCAGCAG---------------CAGCAGCAGAGGCAACAACTAAT---------------------GCTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTGAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGC---------------------------------GAATGCAG---------------------CGT------TAGCAGCAGCAACAACAACA---ACAACAACAACAACAGCAACACCAACACTTGCCACC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACGG---CATCAAGAAGGAATCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCGTT------------GAGGCCT---CCTCCTCATCGTCA---------------TCCTCCTCCTCGTCATCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAAAACGG---CATCAAGAAGGAATC...................................................................................................................................................................................................................................................................2611.00100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGG---CATCAAGAAGGAATCCACGCC.............................................................................................................................................................................................................................................................2511.00100000000100000000
..............................................................................GACG------ACAACAACAAC---AGCAGCAGCAG---------------C..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
........................................................C---------------AACGACGACG------ACAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.33101000000000000000
............................................................................................................AGCAG---------------CAGCAGCAGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18120.08100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAACAGCAACA......................................................................................................................................................................................................................................................................................................................................................21200.05100000001000000000
dm3
CTTTGTCTCAG-TCTCAGAAAACAACAAC-------------------AACAACAAC---------ACCACCAACGACGACG------ACAACAACAAC---AGCAGCAG------------------CAGCAGCAGAGGCAACAACTAAT---------------------GCTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTGAAGCAG----------CAACTTTTCGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGC---------------------------------GAATGCAG---------------------CAT------TAGCAGCAGCAACA---------ACCACAACAACAACAGCAACACCAGCACTTGCCACC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACGG---CATAAAGAAGGAATCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCGTT------------GAGGCCT---CCTCCTCATCGTCA------------------TCCTCCTCCTCGTCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCACC---GGCAAAG---------------CAGCAAA.......................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................CCACCAACGACGACG------ACAACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCGTT------------GAGGCC..................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................CAG---------------------CAT------TAGCAGCAGCAACA---------AC.........................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CTGCAGC---------------------------------ATTAAAGTAAAAAGTGAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGG---CATAAAGAAGGAAT....................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................CAAAAGCAAC------------AGCA-------------ACTGAAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................AAAGCAAC------------AGCA-------------ACTGAAGCAG----------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...................................................................CCACCAACGACGACG------ACAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................AAC---------ACCACCAACGACGACG------ACAACAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAG---------------CAGCAAAAACAATATTAGA...........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......TCAG-TCTCAGAAAACAACAAC-------------------AACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TCTCAG-TCTCAGAAAACAACAAC-------------------AACAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTTGCCACC---GGCAAAG---------------CAGCAAAA......................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................AAGTGAAAACACATTAGCAACTACTGC---------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---CCTCCTCATCGTCA------------------TCCTCCT.......2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TTTGTCTCAG-TCTCAGAAAACAACAAA-------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................AAAAGCAAC------------AGCA-------------ACTGAAGCAG----------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................AAAGCAAC------------AGCA-------------ACTGAAGCAG----------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACACCAGCAC...............................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................C---------------------------------ATTAAAGTAAAAAGTGAAAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................GAAAACACATTAGCAACTACTGC---------------------------------GAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................G----------CAACTTTTCGC----TGCCTGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................GCAG------------------CAGCAGCAGAGGCAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2121.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGCACTTGCCACC---GGCAA...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TGCAAAAGCAAC------------AGCA-------------ACTGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCACTTGCCACC---GGCAAAG---------------CAG...........................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................ACAAC---------ACCACCAACGACGACG------ACAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGAAGGAATCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------..................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................T------TAGCAGCAGCAACA---------ACCACAACA..................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCGTT------------........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGTCA------------------TCCTCCTCCTCGTC2011.0010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCATCGTCA------------------TCCTCCTCCT....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................ACTACTGC---------------------------------GAATGCAG---------------------CAT------TAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCACC---GGCAAAG---------------CAGCAAAA......................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---------ACCACAACAACAACAGCA.........................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAAAACGG---CATAAAGAAGG.......................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGAAGGAATCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-.......................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCGTCA------------------TCCTCCTCCTCGT.2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................TGCAAAAGCAAC------------AGCA-------------ACTGAAGCAG----------C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCGT.....................................................................2611.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................C---------ACCACCAACGACGACG------ACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
....................................................ACAAC---------ACCACCAACGACGACG------ACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CAGCAGCAGAGGCAACAACTAAT---------------------GC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---------------------C-GA----------ATCCGTT------------GAGGCCT---CCTC..........................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCGTT------------GAG.....................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCATCGTCA------------------TCCTCCTCC.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------ACCACAACAACAACAGCAA........................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........CAG-TCTCAGAAAACAACAGA-------------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
............................................................................................................AG------------------CAGCAGCAGAGGCAACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................AACGACGACG------ACAACAACAAC---AGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................AACAACAAC-------------------AACAACAAC---------ACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.3330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACAACAAC-------------------AACAACAAC---------ACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.3030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAGCAACACC....................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................GACG------ACAACAACAAC---AGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................AC-------------------AACAACAAC---------ACCACCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AACAAC-------------------AACAACAAC---------ACCAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
........................ACAAC-------------------AACAACAAC---------ACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000100000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................C---AGCAGCAG------------------CAGCAGCAGAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
....................AACAACAAC-------------------AACAACAAC---------ACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................C---AGCAGCAG------------------CAGCAGCAGAGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2370.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.......................................................................................................GCAGCAG------------------CAGCAGCAGAGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................................C---AGCAGCAG------------------CAGCAGCAGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACACCAGCA................................................................................................................................................................................................................................................................................................................................................17180.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002
.......................................................................................................GCAGCAG------------------CAGCAGCAGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2090.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
droEre2
CTTTGTATCAG-TCCCAGAAAACAACAAC-------------------AGCAACAGC---------------AGCGACGACA------ACAACAACAACACCAGTAGCAGCAGCAGCAGCAGCAGCCGCAGCAGCAGAGGCAACAACTAAT---------------------GCTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTGAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGC---------------------------------AAATGCAG---------------------CAA------CA---------------------------GCGGC---AGCAAC---ACCACTTGCCACC---GGCAAAG---------------TGGCAAAAACAATATTAGAGAACGG---CATCAAGAAGGAAACTACGCCTCCAGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCATT------------GAGGCCT---CCTCCTCATCGTCATCCTCCTCATCCTCGTCCTCATCCTCGTCCTCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................ATTAAAGTAAAAAGTGAAAACACATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.........................................................................GCGACGACA------ACAACAACAACACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCATCCTCGTCCTCATC.........2050.2011000000
......................CAACAAC-------------------AGCAACAGC---------------AGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
.......................................................................................................GTAGCAGCAGCAGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0511000000
droYak3
CTTTGTATCAG-TCCCAGAAAACAACAAC-------------------AATAACT------------------GCGACGACG------ACAACAACAACACCAGCAGCAGCAGCAG------------AAACAGCAGAGGCAACAACTAAT---------------------GCTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTGAAGCAG----------CTACTTTTTGC----CGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTGC---------------------------------GAATGCAG---------------------CAG------CAGCAGCAGCAGCA---------ACAACAGCAACAGCAGCAAC---ACAACTTGCCACG---GGCAAAG---------------CGGCAAAAACAATATTAGAAAACGG---CATCAAGAAGGAATCCACGCCTCCGGC-----------------------------------------------------------------------------------------------------T---------------------------------GT---------------------C-GA----------ATCCGTT------------GAGGCCT---CCTCCTCATCTTCATCCTCC---------TCCTCCTCGTCCTCCTCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................AACAAC-------------------AATAACT------------------GCGACGAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000
...............................................................................................................................................................................................................................................................................................................................GAAAACACATTAGCAACTACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................AAACAACAAC-------------------AATAACT------------------GCGAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------GT---------------------C-GA----------ATCCGTT------------GAGGCCT---CCTCCTC.......................................2711.00101000000000
....................AACAACAAC-------------------AATAACT------------------GCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTAGAAAACGG---CATCAAGAAGGA......................................................................................................................................................................................................................................................................2711.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................CAG------CAGCAGCAGCAGCA---------ACAACAGCA..................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------ACAACAGCAACAGCAGC..........................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAACAGCAGCAAC---....................................................................................................................................................................................................................................................................................................................................................20200.05100000100000
.............................................................................................................................................................................................................................................................................................................................................................................................AG---------------------CAG------CAGCAGCAGCAGCA---------ACAAC......................................................................................................................................................................................................................................................................................................................................................................24200.05100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------ACAACAGCAACAGC.............................................................................................................................................................................................................................................................................................................................................................16200.05100000000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---------ACAACAGC...................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AG---------------------CAG------CAGCAGCAGCAGCA---------ACAA.......................................................................................................................................................................................................................................................................................................................................................................23200.05101000000000
...............................................................................................CAACACCAGCAGCAGCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100000100000
droEug1
CTTTGTCTC-------AGAAAACAACAAC-------------------AACAACAGC---------------------A---------------------------------------------------------GCAGCAACAACGAAC------------------GGCGTTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTAAAGAAT----------CAACTTTTTGC----TGCCTGTAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCGACA------------------------------------AATG------------------------------------------------------------------T---TGCAGC---AATACTTGCCACC---GGCAAAG---------------TGGCAAAAACAATATTAGAAAATGG---CATCAAGAAGGAATCAACGCCTCCGGTAACAAC---GAATGC--------------------------------------------------------------------------------------T---------------------------------GT---------------------T-GA----------ATCAGTT------------GAGGCAT---CTTCA---------TCCTCC---------TCCTCTTCGTCTTCATCSizeHit CountTotal NormTotal
No Reads
droBia1
CTTTGTCTC-------AGAAAGCAGCCAC-------------------AGCAACAGCAACAGCAA---------C---AGCGGCAGC---------------------------------------GACAACTGCGGCAGCAACAACTAAT------------------------G---ATAAAATGCAAAAGCAAC------------AGCA-------------GCTAAAGCAG----------CAACTTTTTGC----CGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTAC------------------------------------------------------------------------A---------------------------GCGGC---TGCAAC---AACACTTGCCACC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACAG---CATCAAGAAGGAATCGACGCCTCCGGG-----------------------------------------------------------------------------------------------------A---------------------------------GC---------------------G-GA----------GTCCCTTGAGAACGCCGC---CGCCT---CCTCCTCTTCATCA---------------TCCTCCTCCTCCTCCACSizeHit CountTotal NormTotal
No Reads
droTak1
CTTTGTCTC-------AGAAATCAACAAC-------------------AGAAACAAC------AA---------C---A---------------------------------------------------------GCTGCACCAACTAAT---------------------GTTG---ATAAAATGCAAAAGCAAC------------AGCA-------------ACTAAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACTACTAC---------------------------------AACGGCT---------------------------------------------------GCA------ACAAC---AACAAC---AACACTTGCCACC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACAG---CATCAAGAAGGAATCAACGCCTCCGGTGACGACGACAAATGC--------------------------------------------------------------------------------------C---------------------------------GT---------------------T-GA----------ATGCGCT------------GAGGCAGCCAACTCCACCTCCTCCTCATCATCTTCTTCATCCTCCTCCTCCTCATCSizeHit CountTotal NormTotal
No Reads
droEle1
CTTTGTCTC-------AGAAAACAG-------------------------------------------------------------------------------------------------------------------CAACAACTAAT---------------------GTTG---ATAAAATGCAAAAGCAAC------------ATCA-------------ACTGAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCTACAGC---------------------------------------------------------------------------AGCAGCA---------ACT------ACAAC---TGCAAC---AACACTTGCCCCC---GGTAAAG---------------CAGCAAAAACAATATTAGAAAACAG---CATCAAGAAAGAATCAACGCCTCCGGCCAC------GAATGC--------------------------------------------------------------------------------------C---------------------------------GT---------------------C-GA----------TGCCAAT------------GAGGCAT---CTTCCTCATCATCGTCCTCC------TCCTCATCGTCTTCGTCGTCSizeHit CountTotal NormTotal
No Reads
droRho1
CTTTGTCTC-------AGAAAACAG-------------------------------------------------------------------------------------------------------------------CAACAACTAAT---------------------GTTG---ATAAAATGCAAAGGCAAC------------ACCA-------------AATGAAGCAG----------CAACTTTTTGC----TGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCTACAGC---------------------------------A------------------------------G------TAGCAGCAGTA---------ACT------ACAAC---TGCAAC---AACACTTGCCCCC---GGCAAAG---------------CAGCAAAAACAATATTAGAAAACAG---CATCAAGAAGGAATCAACGCCTCCGGCCAC------GAATGC--------------------------------------------------------------------------------------C---------------------------------GT---------------------C-GA----------TTCCAAT------------GAGGCCT---CATCCTCATCATCA------------------TCCTCATCGTCATCSizeHit CountTotal NormTotal
No Reads
droFic1
CTTTGTCTC-------AGAAAACAGAAAC-------------------AGAAACAGA------AA---------C---G---------------------------------------------------------GCAGCAGCAACTAAT---------------------GTTG---ATAAAATGCAAAAGCAGCAGCAGCAGCAACAGCAGCAGCAGCA-GCAACTGAAGCAG----------CAACTTTTTAC----CGCCTGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACGCATTAGCAGCTACA------------------------------------------------------------------------------------------------ACTACAACGACAAATGCAAC---AGAACTTGCCCCA---GGGAAAG---------------CGGCAAAAACAATATTAGAAAACAG---CATGCAGAAGGAATCAACGCCTCCGGTCAT------GAATGC--------------------------------------------------------------------------------------C---------------------------------GT---------------------C-GA----------ATCCGTT------------GAGGCCT---CCTCCTCATCATCATCCTCC------TCCTCCTCCTCCTCCTCGTCSizeHit CountTotal NormTotal
No Reads
droKik1
CTTTGTCTC-------AGAAAACAGCAAC----------------------------------------------------------------------------------------------------------------ACCAACTAAT---------------------GTTG---ATAAAATGCACAAGCAAC------------AA----------------------CAG----------CAACTTATTGC----TGCCAGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAACAACGGC---------------------------------AACAGCA---------------------------------------------------ACA------GCAAC---AGCAACAGCACAACTTGCCACCAGCGGCAAGG---------------CGGCAAAAACAATATTAGAAAAAAGAAACATCAAGAAGGAATCAACGCCACCGGCCAC------GAGTGCTACTGCCTCGAC--------------------------------------------------------------------------T---------------------------------GT---------------------G-GA----------ATCCGTT------------GAGGCCA---CCTCATC------ATCCTGC------TTCTCGTCCTCTTCCTCCACSizeHit CountTotal NormTotal
No Reads
droAna3
CTTTGTCTC-------ACAAGCCAACTTCTGCAACA-------CAAGCAGCAACACTAACAACAA---------C---A---------------------------------------------------------ACAACAACAACTAAT---------------------GTTGCTAATAAAATGCAACAACAAC------------AACA----------ACAACAAAAACAA----------CAAATTTTCAC----AGCCAGCGGC------------------------------GGCATTAAAGTAAAAAGTGAAAACACATTAGCTGCAACA------------------------------------------------------------------C------TCGTCGTAGC---------------------------------------------TGGA---AGCAAA------AACATTGCAACAAAGCAAGTCCTATTGGAGAATGG---CATTAAGAAGGAATCAACGCCACCGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------GAGGCCT---CCTGTTCC------TCCTCC---------TCCTCATCATCCTCATCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCGGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A------------GAGGCCT---CCTGTT........................................2311.001100000
.......................................................CTAACAACAA---------C---A---------------------------------------------------------ACAACAACAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2350.201010000
.........................................................................................................................................................................................TGCAACAACAAC------------AACA----------ACAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
............................................................AACAA---------C---A---------------------------------------------------------ACAACAACAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
..........................................................ACAACAA---------C---A---------------------------------------------------------ACAACAACAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
CTTTGTCTC-------AGAAAGCAACTGC-------------------AGCAACAAA------------------------------------------------------------------------------------AACAACTAAT---------------------GTTG---CTGATAGGCAAAAGCAAC------------AACA-------------AC---ACCAG----------CAACTTTTTCA----AGCCAACGGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCAACA------------------------------------------------------------------------------------------------------------------------CTTCATGCCGCA---AGCAAAGTCAGCAATGTTGCAACAACAAAAACGCTGTTAGAGAATGG---CATTAAGAAGGAATCAACGCCGCCAGCAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------A-GAGCAGCAGTCC-ACAGTA------------GAGGCCT---CCACATCATCATCATCCTGC---TCCTCCTCCTCATCCTCCTCATCSizeHit CountTotal NormTotal
No Reads
dp5
CAGCAGCAG-------CAACAGCAGCAGC-------------------AG------C------AA---------CAACAGCAACAGC---------------AACAACAGCAAC-----------------------------------------------------------------------AGCAACAGCAGC------------A----------------GCAACAGCAG----------CAAGTTTTTGC----TGTCAGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCAGTAACAGCAACAGTTGCAACACCAACAACAACAACAACCAATGCAACACCAGCAGCAACGCCAGCAGCAA---------------------------------CAG------------C---AACAGTAG------------CAG---------------CAGCAAAAAGCATGTTAGAAAAGAA---CATCAAGAAGGAATCAACGCCACCGGCAACTACTCCTAATGT--------------------------------------------------------------------------------------C---------------------------------GT---------------------C-GA----------ATCAGTC------------GAGGCCG---CCTCCTC------------CTCCGCCTCATGCTGCTCATCGTCGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................CAACAGTTGCAACACCAACAACAAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................GCAAC-----------------------------------------------------------------------AGCAACAGCAGC------------A----------------GC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020200000000
..............................................................................AGCAACAGC---------------AACAACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000100000
......CAG-------CAACAGCAGCAGC-------------------AG------C------AA---------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000100000
.............................................................................................................GCAAC-----------------------------------------------------------------------AGCAACAGCAGC------------A----------------GCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
...........................................................................................................CAGCAAC-----------------------------------------------------------------------AGCAACAGCAGC------------A----------------GCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.0510100000000
..........................................................................................................ACAGCAAC-----------------------------------------------------------------------AGCAACAGCAGC------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000010000
.....................GCAGCAGC-------------------AG------C------AA---------CAACAGCAACAGC---------------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.0510100000000
..........................AGC-------------------AG------C------AA---------CAACAGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
AGCAGCAAC-------AGCA-GCAACAAC-------------------AG------C------AACAG---CAGCAACAGCA------GCAACAGCAACAGCAGCAACAGCAACAGCAGCAGCAGCAACAACAGCAACAGC--------------------------------------------AACAACAGCAAC------------AGCA-------------GCAGCAGCAG----------CAAGTTTTTGC----TGTCAGCAGC---------------------------------ATTAAAGTAAAAAGTGAAAACACATTAGCAGCAGTAACAGCAACAGTTGCAACACCAACAACAACAACAACTAATGCAACACCAGCAGCAACGCCAGCAGCAACAGCAGCAGCAACAGCA---------ACA------GTAGC---AGCAGC---AACAGTAG------------CAG---------------CAGCAAAAAGCATGTTAGAAAAGAA---CATCAAGAAGGAATCAACGCCACCGGCAACTACTCCTAATGT--------------------------------------------------------------------------------------C---------------------------------GT---------------------C-GA----------ATCAGTC------------GAGGCCG---CCTCCTC------------CTCCGCCTCATGCTGCTCATCGTCGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................AACAACAGCAAC------------AGCA-------------GCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25150.071001000
..........................................................................................................................................................................................ACAACAGCAAC------------AGCA-------------GCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.051010000
...........................................................................................................................................................................................CAACAGCAAC------------AGCA-------------GCAGCAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
.........................................................................................................................................................................................AACAACAGCAAC------------AGCA-------------GCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
.............................................................................................................GCAACAGCAGCAGCAGCAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
droWil2
CTCCAACAA-------CAACAGCAACAAC-------------------AA------C------AACAT---CATC------AACAGCAGCAACAT---------------CAT--------------------------------------------------------------------CAGCAGCAACAGCAAC------------ACCA-------------ACATCAGCAA----------CA--TTCTCAT----AGTCTTCATC---------------------------------ATCAACAGCAGCAGCAACAAC--AACAACAGCAACAGC---------------------------------------------------------------------------AACAGCAACA---------ACA---ACAAC---AACAAC---AACA-------------------------------------------------------------------ACTT----------------------------------------------------------------------------------------------AGCTGCTCCCTA-------------AGCAATGGTGGAGGTCCTTTGTACACCATCAGCAGTGTGCATCAATTTGGTCCGGCCAGTAACAACAGTTC---CGCC------------TCCGCCT---CCTCCTCCTCCACCACTTCCTCCGCCTCATCCTCCTCATCATCATCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC---AACA-------------------------------------------------------------------ACTT----------------------------------------------------------------------------------------------AGCTGCTCCCT................................................................................................................................................................2511.00101000
........................................................C------AACAT---CATC------AACAGCAGCAAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100
..............................................................................................................CAT--------------------------------------------------------------------CAGCAGCAACAGCAAC------------ACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100010
............................................................................................................................................................................................................................................................................ATC---------------------------------ATCAACAGCAGCAGCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.17100010
........................................................C------AACAT---CATC------AACAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19120.08100010
...........................................................................................................................................................................................................................................................................................................................................ACAGCAACAGC---------------------------------------------------------------------------AACAGCAACA---------A..........................................................................................................................................................................................................................................................................................................................................................................22200.05100001
............................................................................................................................................................................................................................................................................ATC---------------------------------ATCAACAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05100010
droVir3
ACTTGCA---A-TGCCAAAATGCAATTG-------------------------------------------------------------------------------------------------------------------CAATTGCTTTTTCTAACCACACAAAATGCACGC---ACAAACCACAAGAACAAC------------AGCA-------------ACTAGAACAATTCGCATGCCCAGCTGCAAAC----TAGCTACAAC------------------------AACCAC---ACACAGGCCCCAAACAGCGAC-AATTGATTGCGGCAGC---------------------------------------------------------------------------AACACCA---------ACA------ACAAC---GACAAC---AGC-----------------AAG---------------CAGCACGGACAATGACAGCGTACA-----------------------------------------------------------------------------------------------------------AGCGACTT--GTCATCAAC------A---------------------------------TT---------------------C-AC----------ATCCACA------------TCATCAT---CATCATCATCAACATC---CTCCGCATCATCATCATCATCATCAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGACAATGACAGCGTACA-----------------------------------------------------------------------------------------------------------AGCGA......................................................................................................................................................................2412.002020000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------A---------------------------------TT---------------------C-AC----------ATCCACC------------........................................................1740.251000000000000000000000000000000000000000000000000000000000100000
droMoj3
ATTAAAGTAAAAAGTGAAAACGCAACAAC-------AGCAACAAC---AA------C------AACAG---CAGC---------------------------------------------------------------------AGCAACT---------------------GTAA---CT--AATGCATTCACAAC------------AACA---ACAGC-AGCAGCAA------------------AGGCTTTGCAGGCTTGCAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAACAACA-------ACAACAG---CATTAAGAAAGAAGCAACACCTCCAGCAAC------AACTGC------GGCGGCTGAGGGCTCCACCACCATCACCAACAACAATAACAACAACAACAACAAC-------------AA----------C---------------------------------A----------------------A-CAACAACAGTTC---AGCA------------TTTGCCT---CGTCATGCTCATCATTCTCC---TCCTCATCATCCTCGTCGTCTTCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGC------GGCGGCTGAGGGCTCCA.................................................................................................................................................................................................................2311.001000001
.TTAAAGTAAAAAGTGAAAACGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
........................ACAAC-------AGCAACAAC---AA------C------AAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAAC-------------AA----------C---------------------------------A----------------------A-CAACAAC................................................................................28200.051100000
...........................AC-------AGCAACAAC---AA------C------AACAG---C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
..........................AAC-------AGCAACAAC---AA------C------AACAG---CAGC---------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000010
..........................AAC-------AGCAACAAC---AA------C------AACAG---CAGC---------------------------------------------------------------------AGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.051100000
..........................AAC-------AGCAACAAC---AA------C------AACAG---CA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051100000
droGri2
CAACAACAA-------CAACAACAACAAC-------------------AA------C------AG---------CAGCAGCTACAATTACAACAA---------------------------------GCAC-----------------------------------------------------AGCAGAAACAAT------------AGCAATAATAGCA------T------G----------CAACAGT--CA----CGCCCACAATGTCTAAGTGAAATCAGATTGAGGC-------------CTGTCAAAACTGGCAGATTATTAACTACGACTGC---------------------------------AACAACAA---------------------CAA------CA---------------------------ACAAC---AGCAAC---AACA---ACC-------ACATAT---------------CTACAACAACAACAACAGCA-ACAA---CAGCAATCG----------------------------------------------------------------------------------------------AATGGCTTTCATCGTCGCCGCTTGGC---------------------------------AG---------------------C-AA----------AACCATCAACGTCGCCGCCGCAGTCG---TCGCCGCAACGTCG------------------TC-----------CSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGTCG---TCGCCGCA......................................1811.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGCAGTCG---TCGCCGCAACGTCG------------------..............2411.00110
..........................................................................................................................................................................................................................................................................................................................................................................................AACAA---------------------CAA------CA---------------------------ACAAC---AGCAAC---AAC.................................................................................................................................................................................................................................................................................................................................................24200.05110
............................................................................................................................................................................................................................................................................................................................................................................................CAA---------------------CAA------CA---------------------------ACAAC---AGCAAC---AA..................................................................................................................................................................................................................................................................................................................................................21200.05110

Generated: 05/17/2015 at 10:29 PM