ID:

dse_652

 Coordinate:

scaffold_1:5632546-5632769 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-18.9

Flybase annnotation

CDS [Dsec\GM20375-cds]; exon [dsec_GLEANR_3198:1]; exon [dsec_GLEANR_3198:2]; CDS [Dsec\GM20375-cds]; intron [Dsec\GM20375-in]

No Repeatable elements found

Sense Strand Reads

--------------------------------------############--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AACGGTCACTCTGAATTGTTCTTTCCTTTTTCATCAACATGGCTGATCAGGTAAGATTCCACGAGAGTGTGCTAAATAAATGAAATACGCGGGTTAAACGGCTCATACGAGCCCGCAACAAGATGCCCTCTAAAGTGTAAGTGCCTAGTGAATGGATGAACCTATGGAGCAGCGGGCAAACGCCATGGGAAGCGAAACCTGGACCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTGTCGCCAATAGTGAACACGAAATGATGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAAAACGCGGTGGTCGTAGTGCGTCG
**************************************************.......((((((..((.(((((............(((((((((.....(((((....)))))...........))))......))))))))))))..))..))))..********************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V115
head
 V114
embryo
 V113
male body		 M054
female body
.......................................TGGCTGATCAGGTAAGAT........................................................................................................................................................................................................................................................................... 18 0 1 17.00 17 9 8 0 0
.........................................GCTGATCAGGTAAGATTCC........................................................................................................................................................................................................................................................................ 19 0 1 3.00 3 1 1 0 1
....................................ACATGGCTGATCAGGTAAGATTC......................................................................................................................................................................................................................................................................... 23 0 1 3.00 3 1 0 2 0
.........................................GCTGATCAGGTAAGATTC......................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 1 1 0 0
.......................................TGGCTGATCAGGTAAGATTCCAC...................................................................................................................................................................................................................................................................... 23 0 1 2.00 2 1 0 1 0
.........................................................................................................................................TAAGTGCCTAGTGAATGGATG...................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0
...............................CATCAACATGGCTGATCAGA................................................................................................................................................................................................................................................................................. 20 1 1 1.00 1 0 1 0 0
.................GTTCTTTCCTTTTTCATCAACATGGCT........................................................................................................................................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0
.....................................CATGGCTGATCAGGTAAGAT........................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0
................................ATCAACATGGCTGATCAGGTAA.............................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 1 0
...............................TATCAACATGGCTGATCAG.................................................................................................................................................................................................................................................................................. 19 1 1 1.00 1 0 1 0 0
................................ATCAACATGGCTGATCAGGTAAGATTC......................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0
.......................................................................................................................................................ATGGATGAACCTATGGAGCAGCGGGC................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1
.........................................GCTGATCAGGTAAGATTCCACGAGAG................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0
............................TTTCATCAACATGGCTGATCAGAAC............................................................................................................................................................................................................................................................................... 25 3 1 1.00 1 0 1 0 0
....................................................................................................................................................................TGGAACAGCGGGCAGAAGCCATGG........................................................................................................................................ 24 3 1 1.00 1 0 0 0 1
.........................................GCTGATCAGGTAAGATTACACGA.................................................................................................................................................................................................................................................................... 23 1 1 1.00 1 0 0 0 1
................................ATCAACATGGCTGATCAGGTAAGAT........................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0
..................................................GTAAGATTCCACGAGAGTGTGCT........................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0
...................................................TAAGATTCCACGAGAGTGTGCTAAAT....................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0
................................ATCAACATGGCTGATCAG.................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 0 1
...........................................................................................................................................................ATGAACCTATGGAGCAGCGGGC................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0
..........................................................................................................................................................GATGAACCTATGGAGCAGC....................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0
...................................AACATGGCTGATCAGGTAAG............................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0
.............................................ATCAGGTAAGATTCCACGAGAGTG............................................................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
....................................ACATGGCTGATCAGGTAAGATTCC........................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0
................................ATCAACATGGCTGATCAGA................................................................................................................................................................................................................................................................................. 19 1 1 1.00 1 0 0 1 0
....................................ACATGGCTGATCAGGTAAGATT.......................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
......................TTCCTTTTTCATCAACATGGCTGA...................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1
.............................TTCATCAACATGGCTGATCAGGTAAGAT........................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1
........................................GGCTGATCAGGTAAGATTCC........................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 0 1 0
................................ATCAACATGGCTGATCAGGTAAGA............................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
.........................................................................................................................................TAAGTGCCTAGTGAATGGATGAACC.................................................................................................................................................................. 25 0 1 1.00 1 0 0 1 0
...................................AACGTGGCTGATCAGGTAAGATTCC........................................................................................................................................................................................................................................................................ 25 1 1 1.00 1 0 1 0 0
....................................................................................................................AACAAGATGCCCTCTAAAGT............................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0
..........................TTTTTCATCAACATGGCTGATCAGAAC............................................................................................................................................................................................................................................................................... 27 3 1 1.00 1 0 1 0 0
.....................................CATGGCTGATCAGGTAAGATTCC........................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 1 0 0 0
........................CCTTTTTCATCAACATGGCT........................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0
...................................................TAAGATTCCACGAGAGTGTGCTAAA........................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0
...................................AACATGGCTGATCAGGTAAGATTCCA....................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0
......................................................................................................................................................................................................................................GCATGGTGTCGCCAATAGTGA......................................................................... 21 0 1 1.00 1 1 0 0 0
...........................................TGATCAGGTAAGATTCCACGAGAGTG............................................................................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 1
...................................AACATGGCTGATCAGGTAAGAT........................................................................................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0
...................................AACATGGCTGATCAGGTAAGATTCC........................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0
...............................................CAGGTAAGATTCCACGAGAG................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 1
......................TTCCTTTTTCATCAACATGGCT........................................................................................................................................................................................................................................................................................ 22 0 1 1.00 1 0 1 0 0
.....................................................AGATTCCACGAGAGTGTGCT........................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0
.........................................................................................................................................TAAGTGCCTAGTGAATGGATGAACCTA................................................................................................................................................................ 27 0 1 1.00 1 0 1 0 0
.......................................TTGCTGATCAGGTAAGAT........................................................................................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0
...............................CATCAACATGGCTGATCAGAAC............................................................................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 1
................................................................................TGAAATACCCGGGCTTAAC................................................................................................................................................................................................................................. 19 3 9 0.22 2 0 0 0 2
................................ATCAACATGGCTGATCAGAAC............................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 1 0

Anti-sense strand reads

TTGCCAGTGAGACTTAACAAGAAAGGAAAAAGTAGTTGTACCGACTAGTCCATTCTAAGGTGCTCTCACACGATTTATTTACTTTATGCGCCCAATTTGCCGAGTATGCTCGGGCGTTGTTCTACGGGAGATTTCACATTCACGGATCACTTACCTACTTGGATACCTCGTCGCCCGTTTGCGGTACCCTTCGCTTTGGACCTGGTCGGAGCGGGATTGGGGTGAAATCGCGTACCACAGCGGTTATCACTTGTGCTTTACTACATATAACGTCGTTTGGCTTGCGAGCAAGGCGTTCGTTTTGCGCCACCAGCATCACGCAGC
**********************************************************************************************************************************************************************.......((((((..((.(((((............(((((((((.....(((((....)))))...........))))......))))))))))))..))..))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V115
head
.....................................................................................................................................................................CCTCGTCTCCCGTTTGTGGTA.......................................................................................................................................... 21 2 1 1.00 1 1 0
.....................AAAGGAAAAAGAAGTTGT............................................................................................................................................................................................................................................................................................. 18 1 2 0.50 1 0 1
..........................................................................................................................................................................................CCCTTAGCTTGGGACCTGG....................................................................................................................... 19 2 11 0.09 1 1 0
......................................................................................................................................................................................GGTACCCTTGGCTTTGGGA........................................................................................................................... 19 3 11 0.09 1 1 0
...................................................................................................................................................................................................................................................................................................TCCGGTCGTTTTGCGCCACCAG........... 22 3 20 0.05 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_1:5632496-5632819 - dse_652 AACGGTCACTCTGAATTGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGAGTGTGCTA-AAT-AAATGAAA-TACGCGGGTTAAACGGCT---CATACGAGCCCGC-------AACAAGATGCCCTCT-AAAGTGTAAGTGCCTAGTGAATGG-AT-GAACCTATGGAGCAGCG------------GGCAAACGCCATG-GG-A-AGCG---------------------------------------------------AAA---------CCTGG---ACCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----AAATG-----------------A---TGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAAAACGCGGTGGTCGTAGTGCGTCG
droSim2 2r:8793090-8793413 - dsi_1735 AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGAGTGTGCTA-AAT-AAATGAAA-TACGCGGGCTAAACGGCT---CATACGAGCCCGC-------AACAAGATGCCCTCT-AAAGTGTAAGTGACCAGTGAATGG-AT-GAACCTATGGAGCAGCG------------GGCAAACGCCCTG-GG-A-GGCG---------------------------------------------------CAA---------CCTGG---ACCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----AAATG-----------------A---TGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTAGTGCGTCG
dm3 chr2R:8088006-8088329 - AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGAGTGTGCTA-AAT-AAATGAAA-TACGCGGGTTAAACGGCT---GATGCGAACCCGC-------AACAAGATGCCCTCT-GAAGTGTAAGTGACCAGTGAATGG-AT-GAACCTATGGAGCAGCG------------AACAAACGCACTG-GG-A-AGCG---------------------------------------------------TAG---------CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----AAATG-----------------A---TGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTTGTGCGTCG
droEre2 scaffold_4845:17707321-17707641 + AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGAGTGTGCTA-AAT-AAATGAAA-TACGCGGGTTAAACGGCG---GATGCGAAGCCGA-------AACAAGATGCCCGAT-GATGTGTAAGTGACGAGTGAGTGG-AC-ACACCCATGGAGTAGCA------------AGCAATCGCCCTG-GG-A-AGCG---------------------------------------------------CAG---------CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----A--------------------AA---TGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCTGTGGTTGTTGTGCGTCG
droYak3 2R:8861889-8862209 + AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGAGTGTGCTG-AAT-AAATGAAA-TACGCGGGTTAAACGGCG---GATGCAAAGCCGA-------AGCAAAATGCCCGAT-GAGGTGTAAGTGACGAGTGAGTGG-AC-AAACCTATGGAATAGCG------------AGCAAAAGCCCTG-GG-A-AGCG---------------------------------------------------CAG---------CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----A--------------------AA---TGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTAGTGCGTCG
droEug1 scf7180000409462:2035636-2035956 + AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGATTGTGCTT-AAT-AAATGAAA-TACGCGCGTTAAACGGCG---GATGGAGACACAA-------AACATGTTGCCCGAG-GACTTGTAAGTGAGATATGAGTGG-AC-CAATTCGTGACGGAGCG------------AGGAAACTCCATA-GA-A-GCCA---------------------------------------------------AAA---------CTCAA---ACCAACCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----A--------------------AA---TGTATATTGCAGCAAACTGAACGCGCGTTCCGCAAACAACATGCTGTTGTCGTTGTGCGTCG
droBia1 scf7180000301754:1834646-1834967 + AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ATGAGGAAGTGCTT-AAT-AAATGAAA-TTCGCGGGTTAAACGACG---GTTGCAAACCCGA-------AACAAGATGCCAAGG-GAAGTGTAAGTGAGATGTGACTGG-AC-GAACCGCTGGCGGGCAA------------GAGGAACACCCTGAGG-A-AAGG---------------------------------------------------CAT---------TCCAG---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----A--------------------AA---TGTATATTCCAGCAAACCGAACGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGCCG
droTak1 scf7180000415091:141036-141358 - AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ATGAGGAAGTGCTT-AAT-AAATGAAA-TACGCGGCTTAAACGTCG---CATGCAGACCCGA-------AACAAGATGCCACGG-GGAGTGTAAGTGACGCACGAGTGG-AT-GAACCGCCGCAGGAGAA------------GCGAAACCGCCTG-GGCGCCACA---------------------------------------------------CAA---------CCCGA---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCAAATAGTGAACACG----A--------------------AA---TGTATATTGCAGCAAACCGAACGCGCGTTCCGCAAACAGCACGCGGTGGTCGTTGTGCGTCG
droEle1 scf7180000491349:36381-36682 + -------------------TCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGAATAC--CGAGAGTTCGTTG-AAA-TAGTGAAA-TACGCTGCTTAAACAACG---GTTGGAGATTCCG-------GACAAAGTGCCAGAG-GCCTTGTAAGTGAGCTGTTGCTGG-AC-GAACCAGAGGAGGTGTC------------AGGAATCGACCCA-GC-AAGACA---------------------------------------------------GAA---------TCCGG---AGCAGCCTCGACCTAACCCCACTTTAGCGCATGGTG------------TCGCACGTAGTGAACTCG----A--------------------AA---TGTATATTCCAGCAAACCGAACGCGCGTTCCGCAAGCAGCACGCGGTGGTCGTTGTGCGCCG
droRho1 scf7180000777695:17890-18193 + ------------------TTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-CAGAGAGTGAGCTA-AAT-AAATGAAA-TACGCATGTTAAACGGCG---GATGGAGTCCCGA-------AACAAGATGCCAGAG-GCGGTGTAAGTGAGATGTGGGTGA-AC-AAATCACTGGAGGAGCC------------ATGAATCGCCTGC-TC-GGGCCA---------------------------------------------------CAG---------TTTGG---AGCAGCTTCGCCCTAACCCTACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----A--------------------AA---TGTATATTCCAGCAAACCGAACGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGTCG
droFic1 scf7180000453778:443556-443857 + ------------------TTCTTT---CTTTTTCCATCAACATGGCTGATCAGGTAGGATTTC-GCTACGGCGTGCTA-ACT-AAATGAAA-TAGGCGTAAAAAACGGCG---GACAAATAACCAA-------CACACGATGACGGAG-GCCGTATAAGTGAGCTGTAGGTGA-AC-GCGACGCCGGAGAAGCG------------ATGGGCCACCTAG-GA-G-TGAA---------------------------------------------------CCA---------TCTAG---AGCAGCCTCACCCTAACCCCACTTTAGCGCATGGTG------------TCTCCAGTAGTGAAC-CA----A--------------------AT---TGTATGTTGCAGCAAACCGAGCGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGCCG
droKik1 scf7180000302411:851938-852243 - -----------------GCTCTTT---CCTCTTTCAACAACATGGCTGATCAGGTAAGATTCC-ACGACAATGTGTAA-AAT-AAATGAAA-TACGCGGCCTAAACCACG---GATGCAAAATGAA-------AAGAGACAGCCAAAGAGGTTTGTAAGTGAGACGTGA-TGG-ATGGAAGCGATGGAAAGGCC------------GGGACACCGAGCG-GC-AGCCAA---------------------------------------------------CAA---------TTCGC---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------CCTCAAATAGTGTACACG----A--------------------AA---TGTATATTGCAGCAAACCGAACGCGCGTTCCGCAAACAGCACGCGGTGGTTGTGGTGCGACG
droAna3 scaffold_13266:5381477-5381782 - --------CTCTAAGTCTTTCTTT---CTTTTTT--TCAACATGGCTGATCAGGTAAGGTTTTCAAAAACGCGTGAAC-AAT-AAATGAAAATAAGGCAATGAA-GCAAGGAAATTGCGAAATGGA-----------------------AATGTGCAAGTAAGTTATTGCTTG--C-AAATCAATGGACTGGACGGTGAAATATTCTGGAAA--------------------------------------------------------------------CAATTCCAGGGAGTCAA---AGCAGATGCGCCCTAACCCTACTTTTGCACATGCTG------------TCTCACAATGTGTACACG----A--------------------AA---TGTATATTCCAGCAAACCGAACGAGCCTTTCGCAAGCAGCACGCGGTGGTTGTGGTGCGCCG
droBip1 scf7180000395751:1163486-1163791 - --------CTCTAAGTCTTTCTTT---CTTTTTT--TCAACATGGCTGATCAGGTAAGGTTTTTAAAAACGCGTTAAC-AAT-AAATGAAAATTAGGCGAGGAA-GCCTGGAAAAAGCGAAATGGGAACGGAAGA----GTGAGTGAT-TGCTT-------GCAAATCAATGG-AC-CGGACTGTGAAATATCT------------AGCAAACAAC-TG----A-A--------------------------------------------------------------GGGAGTCAG---AGAAGATGCGCCCTAACCCTACTTTTGCACATGCTG------------TCTCACAATGTGTACACG----A--------------------AA---TGTATATTCCAGCAAACTGAACGAGCTTTTCGCAAGCAGCACGCGGTTGTTGTGGTGCGCCG
dp5 3:2928693-2929000 + dps_986 ------------------TTCTTTCTTTCTTTTGCTTCAAAATGGCTGATCAGGTAAGACTTT-CGGAAAATGTGTTGAAAT-TAATGATT-TATAGCGGTTTTAAGGCG---GATGTGAGGTAAA-------TTGATAGTGCCAGAT-GGAAAGTAAGTGAGTTGTGCGTGA-AT-AAACTTTGTATGGAGGG------------ATG---------------------------------------------TCAAGTGATGCGGAA-------GAAGAAA--C------TGTGG---TCCATGTTCAACCTAACCTTACTTTAGCGCATGGTA------------TCTGACAAAGTGTACACG----A--------------------AA---TGT--ATTCCAGCAAACTGAACGTGCATTCCGCAAACAACATGCGGTGGCCACTGTGCGGCG
droPer2 scaffold_2:3119096-3119403 + ------------------TTCTTTCTTTCTTTTGCTTCAAAATGGCTGATCAGGTAAGACTTT-CGGAAAATGTGTTGAAAT-TAATCATT-TATAGCGGTTTTAAGGCG---GATGTGAGGTAAA-------TACATAGTGGCAGAT-GGAAAGTAAGTGAGTTGAGCGTGA-AT-AAACTTTGTATAGAGGG------------ATG---------------------------------------------TCAAGTGATGCGGAA-------GAAGAAA--C------TGTGG---TCCATGTTCAACCTAACCTTACTTTAGCGCATGGTA------------TCTGACAAAGTGTACACG----A--------------------AA---TGT--ATTCCAGCAAACTGAACGTGCATTCCGCAAACAACATGCGGTGGCCACTGTGCGGCG
droWil2 scf2_1100000004558:529580-529886 - ------------------TTCTTT---CCTCTTGCTCCAACATGGCTGATCAGGTAAGGCGTA-AAAAT-GTGGTCAA-AATTAAATAAAT-TGAGTGCGATAAAGTGTA---AACATC-AGTGGA-------TTGAGCTGGACAAAG-AGTCAACAAGTGACTTGTGT-TGGAAG-ATA-TGCCGGATTGG----------------------------------------------A------TTG---ATGAGGAGTAATCCTAAT-------GCATCAT--C------GATGGA--GCCCGCTTCAACCTAACCCTACTTTCCAGCATGGTG------------TCTCAAGAACTGAAACAA----C--------------------TT---TTTATATTGTAGCAAACCGAGCGCGCTTTCCGCAAACAGCATGCGGTGCCAACCGTGCGTCG
droVir3 scaffold_12875:6773007-6773364 + dvi_5536 ------------------TTCTTT---CCTCTTGCTCCAACATGGCTGATCAGGTAAGGCAGC-AAAAATGTGTTCGA-AATTAAATAAAA-TACGGCATTTAATGCGCT---GCTATAAGATAAA-------TGCACTGTGAAATGT-GAAAT-TAAGTGCATTGTGAGTTG-AA-CTACACA----AT------------------------TGCTG-T------------GCAGCGCAATCATTGTGAGTGTATTGTTTGGGAAA-TCGAAATTCAACAG--CCAG---A-TAGGCCAGCATATTCAACCTAACCACACTTGCACGCATGCTTCGAACGCTGGTGTCTCACAATGTACACACT--CGGAATTTT-----ATT-------ATTATTATTATTATAGCAAACGGAACGTGCATTTCGCAAGCAGCACTCGGTGCCGACAACGCGTCG
droMoj3 scaffold_6496:13444852-13445187 - ------------------TTCTTT---CCTCTTGCTCCAACATGGCTGATCAGGTAAGGCAGC-AAAAATGTGTTCGA-AATTAAATAAAA-TACGTCAGTTATAGCATT---GCTATAAAACAAA-------TTTAATGTGAAATGT-GAAATAT-GGTGCATTGTGAGTTG-AG-CAATACAT----T------------------------TACTG-T------------ATACCA------TTG--AATGTGTTGTTTTCCAAAAAGGAGAAGCAACAG--CGAG---TGAGG---CTCACATTCAACCTAACCACACTTCTACGCATGCTG------------TTTACGCTGCTAAATACACTTGGAATTTG-----ACT-------A---TTATTTTTGTAGCAAACAGAACGCGCATTTCGCAAGCAACACTCAGTGCCGACAATACGACG
droGri2 scaffold_15112:1650448-1650802 + ------------------TTCTTT---CCTCTTGCTCCAACATGGCTGATCAGGTAAGGCACC-AAAAGTGTGTTCGA-AATTAAATAAAA-TACAGCATTTAATGCGCT---ACACTATGATACA-------ACCAAAGTGAATTGT-GAAGT-TAAGTGTGTTGTGAGTAC-AC-CCAGACA----ATAA------------------------------------TTTTTACAGTACAAGCACTGCAAGTGCATTGTTTGGCAAA-GACAAATTTACAAC--TCAG---CTCAT-CGAG--CATTCAACCTAACCAAACTTTTAGGCATGCTG--A------A--TATCTCACAACACACACA----AAATGTGGAATAGCTATTTATTTTGA--TTGGTTGTAGCAAATGGAACGTGCGTTTTGCAAACAAAATGCGGTGCCGACAACGCGTCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
AACGGTCACTCTGAATTGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGAGTGTGCTA-AAT-AAATGAAA-TACGCGGGTTAAACGGCT---CATACGAGCCCGC-------AACAAGATGCCCTCT-AAAGTGTAAGTGCCTAGTGAATGG-AT-GAACCTATGGAGCAGCG------------GGCAAACGCCATG-GG-A-AGCG---------------------------------------------------AAA---------CCTGG---ACCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----AAATG-----------------A---TGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAAAACGCGGTGGTCGTAGTGCGTCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................TGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................18117.00170089
............................................GCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................1913.0031011
.......................................ACATGGCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................2313.0030201
............................................GCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................1812.0020011
..........................................TGGCTGATCAGGTAAGATTCC-AC........................................................................................................................................................................................................................................................................................................................................................................................................2312.0020101
...........................................................................................................................................................TAAGTGCCTAGTGAATGG-AT-G........................................................................................................................................................................................................................................................................................2112.0020002
..................................CATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.................GTTCTTT---CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
........................................CATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...................................ATCAACATGGCTGATCAGGTAA.................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
...................................ATCAACATGGCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001
.........................................................................................................................................................................ATGG-AT-GAACCTATGGAGCAGCG------------GGC.........................................................................................................................................................................................................................................................2611.0011000
............................................GCTGATCAGGTAAGATTCC-ACGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010001
...............................TTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
...................................ATCAACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
.....................................................GTAAGATTCC-ACGAGAGTGTGCT.............................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
......................................................TAAGATTCC-ACGAGAGTGTGCTA-AAT-.......................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
...................................ATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
..............................................................................................................................................................................AT-GAACCTATGGAGCAGCG------------GGC.........................................................................................................................................................................................................................................................2211.0010010
............................................................................................................................................................................G-AT-GAACCTATGGAGCAGC.........................................................................................................................................................................................................................................................................1911.0010010
......................................AACATGGCTGATCAGGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
................................................ATCAGGTAAGATTCC-ACGAGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
.......................................ACATGGCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
...................................ATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.......................................ACATGGCTGATCAGGTAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
......................TT---CCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000
................................TTCATCAACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
...........................................GGCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
...................................ATCAACATGGCTGATCAGGTAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
...........................................................................................................................................................TAAGTGCCTAGTGAATGG-AT-GAACC....................................................................................................................................................................................................................................................................................2511.0010100
.....................................................................................................................................AACAAGATGCCCTCT-AAAGT................................................................................................................................................................................................................................................................................................................2011.0010010
.............................TTTTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
........................................CATGGCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
...........................CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
......................................................TAAGATTCC-ACGAGAGTGTGCTA-AA.........................................................................................................................................................................................................................................................................................................................................................................................2511.0010001
......................................AACATGGCTGATCAGGTAAGATTCC-A.........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
........................................................................................................................................................................................................................................................................................................................................GCATGGTG------------TCGCCAATAGTGA.................................................................................................2111.0010001
..............................................TGATCAGGTAAGATTCC-ACGAGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
......................................AACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
......................................AACATGGCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..................................................CAGGTAAGATTCC-ACGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
......................TT---CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
........................................................AGATTCC-ACGAGAGTGTGCT.............................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
...........................................................................................................................................................TAAGTGCCTAGTGAATGG-AT-GAACCTA..................................................................................................................................................................................................................................................................................2711.0010010
..................................CATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2230.3311000
...................................ATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710100
droSim2
AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGAGTGTGCTA-AAT-AAATGAAA-TACGCGGGCTAAACGGCT---CATACGAGCCCGC-------AACAAGATGCCCTCT-AAAGTGTAAGTGACCAGTGAATGG-AT-GAACCTATGGAGCAGCG------------GGCAAACGCCCTG-GG-A-GGCG---------------------------------------------------CAA---------CCTGG---ACCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----AAATG-----------------A---TGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTAGTGCGTCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................TGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................18130.0030168400000001100000
...........................................GGCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................1914.00422000000000000000
.............................TTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1813.00303000000000000000
............................................GCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................1813.00320000000001000000
..............................TTTTCATCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300300000000000000
.......................................ACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................2113.00330000000000000000
.......................T---CCTTTTTCATCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2913.00300020010000000000
................................TTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2412.00202000000000000000
...................................................................................................................................................T-AAAGTGTAAGTGACCAGTGAATGG-A...........................................................................................................................................................................................................................................................................................2612.00200000001100000000
............................................GCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
..........................................TGGCTGATCAGGTAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................................1912.00220000000000000000
.............................TTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200110000000000000
..........................................TGGCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................2012.00202000000000000000
.....................TTT---CCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200000000000000
..........................................TGGCTGATCAGGTAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................1821.50330000000000000000
.....................................................GTAAGATTCC-ACGAGAGTGTGCTA-AAT-.......................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000001000000
......................................AACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
.............................TTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
............................CTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................TTTTTCATCAACATGGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
......................................AACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1511.00100000000001000000
.........................................ATGGCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.......................T---CCTTTTTCATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
...............................TTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
...........................CCTTTTTCATCAACATGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
......................................................TAAGATTCC-ACGAGAGT..................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000000001000000
.............................................................................................................T---CATACGAGCCCGC-------AACAAGATGCCC.........................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
...............................TTTCATCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
..............................TTTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
.................................................................................T-AAATGAAA-TACGCGGGT.....................................................................................................................................................................................................................................................................................................................................................................1811.00100000000001000000
...................TCTTT---CCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
.......................................ACATGGCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
....................CTTT---CCTTTTTCATCAACATGGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...........................................GGCTGATCAGGTAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...............................................................................................................................................................................................GCG------------GGCAAACGCCCTG-GG-A-GGCG---------------------------------------------------..................................................................................................................................................................................2311.00100000000000100000
..................................................CAGGTAAGATTCC-ACGAGAGTGT................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000100000000000
...............TCGTTCTTT---CCTTTTTCATCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
.........................................................................................................................................................TGTAAGTGACCAGTGAATGG-A...........................................................................................................................................................................................................................................................................................2111.00100000001000000000
......................................AACATGGCTGATCAGGTAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.........................................................................................................................................................................................GGAGCAGCG------------GGCAAACGCCCTG-GG-A-.........................................................................................................................................................................................................................................2511.00100000000001000000
..............................TTTTCATCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000001000000000
....................CTTT---CCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
......................................AACATGGCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
..............................TTTTCATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000100000000
..............................TTTTCATCAACATGGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.......................T---CCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCGCAAGCAACACGCGGTGGTCGTA........2711.00100000010000000000
...............................TTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
............................................GCTGATCAGGTAAGATTCC-AC........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000100000
..................................CATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100000000000000
...................................ATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2150.40200200000000000000
.........TCTGAATCGTTCTTT---CCTTTTTCATC....................................................................................................................................................................................................................................................................................................................................................................................................................................2630.33100000001000000000
.ACGGTCACTCTGAATCGTTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.33100000010000000000
..........CTGAATCGTTCTTT---CCTTTTTCATCAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................2830.33100100000000000000
AACGGTCACTCTGAATCGTTCTTT---CCTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2830.33100000001000000000
..CGGTCACTCTGAATCGTTCTTT---CCT............................................................................................................................................................................................................................................................................................................................................................................................................................................2530.33100100000000000000
dm3
AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGAGTGTGCTA-AAT-AAATGAAA-TACGCGGGTTAAACGGCT---GATGCGAACCCGC-------AACAAGATGCCCTCT-GAAGTGTAAGTGACCAGTGAATGG-AT-GAACCTATGGAGCAGCG------------AACAAACGCACTG-GG-A-AGCG---------------------------------------------------TAG---------CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----AAATG-----------------A---TGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTTGTGCGTCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................TGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................181129.00129000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000001000000000000000000000000000000000000000300000010000000000000003210000000000100020000100000001000100101001212200541100100000000011033000310010014140110004330224020114004210221112010
............................................GCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................18133.00330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000120110000002000000000000000200100002110001001000000510000000000000010220110000
.....................................................GTAAGATTCC-ACGAGAGTGTGCTA-AA.........................................................................................................................................................................................................................................................................................................................................................................................26120.00200000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000050000001000000000000010302010000000000000000000000000000100000000000000000000000000000000000000011000000100000000000000000001000000
..........................................TGGCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................20118.00180000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000110100000000000001000000001001400140000000000001100
............................................GCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................19115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000101000000010000000000000000000010000000001000000020000002001000000000110000
............................CTTTTTCATCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................23112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001500000000000000000000000010000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000010000000
...................................................................................................................................................................................ACCTATGGAGCAGCG------------AACAAAC.....................................................................................................................................................................................................................................................22111.001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................T---CCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................26110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020201400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
............................CTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................21110.00100000000000000000000000010000000000000000000000000001000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010102000000000000000000000000000000000001000000000000000000000000000000000000000100000000000000000000000000
......................................AACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................22110.00100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000100200210000000000000110
..............................................................................................................................................................................................................................................................................................................................................................................................................TATATTGCAGCAAACCGAACGCTCGT..................................2619.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................2119.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000010100200000000000000100
.................................TCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000101200000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................T---CCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2318.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000010500000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.....................................................GTAAGATTCC-ACGAGAGTGTGC..............................................................................................................................................................................................................................................................................................................................................................................................2218.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040001000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000
...........................................GGCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................1918.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110301010000000000000010
.................................................................................T-AAATGAAA-TACGCGGGTTAAACGGC.............................................................................................................................................................................................................................................................................................................................................................2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010002000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000100000
............................................GCTGATCAGGTAAGATTCC-A.........................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000120000000000000000000000000
...........................CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010002000000002000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...........................CCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000003000000000000000000000000000000000000000000000000000000000000100000100000000000010000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACACGCGGTGGTCGTTGTGCGTC.2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GTAAGATTCC-ACGAGAGTGTGCT.............................................................................................................................................................................................................................................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000010000000200000000000000000000000000
...................................ATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000040000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................GTAAGTGACCAGTGAATGG-AT-GAACC....................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100000000000000000000000000000000000000001000000000100000000000000000000000
...............................TTTCATCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2016.0060000000000000000000000010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.....................................................GTAAGATTCC-ACGAGAGTGTGCTA-AAT-.......................................................................................................................................................................................................................................................................................................................................................................................2716.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000001000000000010000101000000000000000000100000
...................................ATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................1916.0060000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020001001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CTTT---CCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001210000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GTAAGATTCC-ACGAGAGTGT................................................................................................................................................................................................................................................................................................................................................................................................2015.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
............................................GCTGATCAGGTAAGATTCC-ACGAGAG...................................................................................................................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000010000000001000000000000000000000100
............................................GCTGATCAGGTAAGATTCC-AC........................................................................................................................................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000012000000000000000000000100
...................TCTTT---CCTTTTTCATCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................CATGGCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................2315.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000
..........................................TGGCTGATCAGGTAAGATT.............................................................................................................................................................................................................................................................................................................................................................................................................1915.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000010000000
............................................GCTGATCAGGTAAGATTCC-ACGAG.....................................................................................................................................................................................................................................................................................................................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000010000000002000000000
............................CTTTTTCATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2515.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000
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.....................................................................................................TAAACGGCT---GATGCGAACCCG.............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.....................TTT---CCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................AACGCACTG-GG-A-AGCG---------------------------------------------------TAG---------C.....................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................................TAAACGGCT---GATGCGAACCCGC-------AACATC...............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......ACTCTGAATCGTTCTTT---CCTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGTGGTCGTTGTGCGT..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................GTGACCAGTGAATGG-AT-GAACCTA..................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................C-------AACAAGATGCCCTCT-GAAG.................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000
.....................................CAACATGGCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACCGAACGCTCGTTCCGCA............................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................TG-----------------A---TGTATATTGCAGCAAACCGAACGCT.....................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGAGTGTGCTA-AAT-AAATGAAA-TACGCGGGTTAAACGGCG---GATGCGAAGCCGA-------AACAAGATGCCCGAT-GATGTGTAAGTGACGAGTGAGTGG-AC-ACACCCATGGAGTAGCA------------AGCAATCGCCCTG-GG-A-AGCG---------------------------------------------------CAG---------CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----A--------------------AA---TGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCTGTGGTTGTTGTGCGTCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................T---CCTTTTTCATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2712.0022000000
......................TT---CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2212.0021100000
.............................TTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1812.0021000010
..................................CATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2212.0022000000
..........................................TGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000020
.....................................................................................................................................AACAAGATGCCCGAT-GATGT................................................................................................................................................................................................................................................................................................................2011.0010000100
............................CTTTTTCATCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
............................CTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
......................TT---CCTTTTTCATCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001
...........TGAATCGTTCTTT---CCTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
............................................GCTGATCAGGTAAGATTCC-..........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
....................CTTT---CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
..............................TTTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
............................................GCTGATCAGGTAAGATTC............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...................................ATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001000
...........................................GGCTGATCAGGTAAGATTCC-AC........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
...............................TTTCATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000000
....................................................................................................................................................................................................................................................................................................CCTGG---ACCAGCTTCGCCCTAACCCCACT.......................................................................................................................................2811.0011000000
......................TT---CCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
..................................CATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
........................................................................................................................................AAGATGCCCGAT-GATGTGTAAGT..........................................................................................................................................................................................................................................................................................................2311.0010001000
....GTCACTCTGAATCGTTCTTT---...............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
...................................ATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
.............AATCGTTCTTT---CCTTTTTC.......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010001000
............................CTTTTTCATCAACATGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
..............................TTTTCATCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.........................................................................................................................................................................................................................................................................................AG---------CCTGG---ACCAGCTTCGCCCT................................................................................................................................................2111.0010001000
.............................TTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
.............................................................................................................................................................................................................................................................................................................................................................CGCCAATAGTGAACACG----A--------------------...................................................................1811.0010001000
.....................................CAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................1870.1410100000
droYak3
AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGAGTGTGCTG-AAT-AAATGAAA-TACGCGGGTTAAACGGCG---GATGCAAAGCCGA-------AGCAAAATGCCCGAT-GAGGTGTAAGTGACGAGTGAGTGG-AC-AAACCTATGGAATAGCG------------AGCAAAAGCCCTG-GG-A-AGCG---------------------------------------------------CAG---------CCTGG---ACCAGCTTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----A--------------------AA---TGTATATTGCAGCAAACCGAACGCTCGTTCCGCAAGCAACACGCGGTGGTCGTAGTGCGTCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................TT---CCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2414.00403100000000
..........................................TGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................1813.00320010000000
...............TCGTTCTTT---CCTTTTTCATCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................2812.00202000000000
...........................CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2012.00201000010000
.....................TTT---CCTTTTTCATCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2712.00201100000000
.........................................................................................................................................................................................................................................................................................AG---------CCTGG---ACCAGCTTCGCCC.................................................................................................................................................2011.00100100000000
.....................................................................................................................................AGCAAAATGCCCGAT-GAGGTGTAAG...........................................................................................................................................................................................................................................................................................................2511.00100010000000
......................TT---CCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.............................TTTTTCATCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTGGTCGTAGTGCGTCG2011.00100000010000
.......................T---CCTTTTTCATCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000000000
........................................................................................................................................................................................................................................................................................................G---ACCAGCTTCGCCCTAACCCCA.........................................................................................................................................2211.00100000010000
..............................TTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
.................................TCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100000000
.....................................................................................................................................................................GTGAGTGG-AC-AAACCTATG................................................................................................................................................................................................................................................................................1911.00100000010000
..............................TTTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
..................................CATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
...........TGAATCGTTCTTT---CCTTTTTCATCAACA................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
..............................TTTTCATCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCTCGTTCCGCAAGC.........................1911.00100100000000
.............................TTTTTCATCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.......................................ACATGGCTGATCAGGTAAGAT..............................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000
.....................TTT---CCTTTTTCATCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
....................CTTT---CCTTTTTCATCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000
..........CTGAATCGTTCTTT---CCTTTTT........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
............................CTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000
..............ATCGTTCTTT---CCTTTTTCATCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
.....................TTT---CCTTTTTCATCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000
.............................................CTGATCAGGTAAGATTCC-ACGAGAGT..................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000
.......................T---CCTTTTTCATCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
...GGTCACTCTGAATCGTTCTTT---CCT............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000
droEug1
AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ACGAGATTGTGCTT-AAT-AAATGAAA-TACGCGCGTTAAACGGCG---GATGGAGACACAA-------AACATGTTGCCCGAG-GACTTGTAAGTGAGATATGAGTGG-AC-CAATTCGTGACGGAGCG------------AGGAAACTCCATA-GA-A-GCCA---------------------------------------------------AAA---------CTCAA---ACCAACCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----A--------------------AA---TGTATATTGCAGCAAACTGAACGCGCGTTCCGCAAACAACATGCTGTTGTCGTTGTGCGTCGSizeHit CountTotal NormTotal
No Reads
droBia1
AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ATGAGGAAGTGCTT-AAT-AAATGAAA-TTCGCGGGTTAAACGACG---GTTGCAAACCCGA-------AACAAGATGCCAAGG-GAAGTGTAAGTGAGATGTGACTGG-AC-GAACCGCTGGCGGGCAA------------GAGGAACACCCTGAGG-A-AAGG---------------------------------------------------CAT---------TCCAG---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----A--------------------AA---TGTATATTCCAGCAAACCGAACGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGCCGSizeHit CountTotal NormTotal
No Reads
droTak1
AACGGTCACTCTGAATCGTTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-ATGAGGAAGTGCTT-AAT-AAATGAAA-TACGCGGCTTAAACGTCG---CATGCAGACCCGA-------AACAAGATGCCACGG-GGAGTGTAAGTGACGCACGAGTGG-AT-GAACCGCCGCAGGAGAA------------GCGAAACCGCCTG-GGCGCCACA---------------------------------------------------CAA---------CCCGA---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------TCGCAAATAGTGAACACG----A--------------------AA---TGTATATTGCAGCAAACCGAACGCGCGTTCCGCAAACAGCACGCGGTGGTCGTTGTGCGTCGSizeHit CountTotal NormTotal
No Reads
droEle1
-------------------TCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGAATAC--CGAGAGTTCGTTG-AAA-TAGTGAAA-TACGCTGCTTAAACAACG---GTTGGAGATTCCG-------GACAAAGTGCCAGAG-GCCTTGTAAGTGAGCTGTTGCTGG-AC-GAACCAGAGGAGGTGTC------------AGGAATCGACCCA-GC-AAGACA---------------------------------------------------GAA---------TCCGG---AGCAGCCTCGACCTAACCCCACTTTAGCGCATGGTG------------TCGCACGTAGTGAACTCG----A--------------------AA---TGTATATTCCAGCAAACCGAACGCGCGTTCCGCAAGCAGCACGCGGTGGTCGTTGTGCGCCGSizeHit CountTotal NormTotal
No Reads
droRho1
------------------TTCTTT---CCTTTTTCATCAACATGGCTGATCAGGTAAGATTCC-CAGAGAGTGAGCTA-AAT-AAATGAAA-TACGCATGTTAAACGGCG---GATGGAGTCCCGA-------AACAAGATGCCAGAG-GCGGTGTAAGTGAGATGTGGGTGA-AC-AAATCACTGGAGGAGCC------------ATGAATCGCCTGC-TC-GGGCCA---------------------------------------------------CAG---------TTTGG---AGCAGCTTCGCCCTAACCCTACTTTAGCGCATGGTG------------TCGCCAATAGTGAACACG----A--------------------AA---TGTATATTCCAGCAAACCGAACGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGTCGSizeHit CountTotal NormTotal
No Reads
droFic1
------------------TTCTTT---CTTTTTCCATCAACATGGCTGATCAGGTAGGATTTC-GCTACGGCGTGCTA-ACT-AAATGAAA-TAGGCGTAAAAAACGGCG---GACAAATAACCAA-------CACACGATGACGGAG-GCCGTATAAGTGAGCTGTAGGTGA-AC-GCGACGCCGGAGAAGCG------------ATGGGCCACCTAG-GA-G-TGAA---------------------------------------------------CCA---------TCTAG---AGCAGCCTCACCCTAACCCCACTTTAGCGCATGGTG------------TCTCCAGTAGTGAAC-CA----A--------------------AT---TGTATGTTGCAGCAAACCGAGCGCTCGTTCCGCAAACAACACGCGGTGGTCGTTGTGCGCCGSizeHit CountTotal NormTotal
No Reads
droKik1
-----------------GCTCTTT---CCTCTTTCAACAACATGGCTGATCAGGTAAGATTCC-ACGACAATGTGTAA-AAT-AAATGAAA-TACGCGGCCTAAACCACG---GATGCAAAATGAA-------AAGAGACAGCCAAAGAGGTTTGTAAGTGAGACGTGA-TGG-ATGGAAGCGATGGAAAGGCC------------GGGACACCGAGCG-GC-AGCCAA---------------------------------------------------CAA---------TTCGC---AGCAGCCTCGCCCTAACCCCACTTTAGCGCATGGTG------------CCTCAAATAGTGTACACG----A--------------------AA---TGTATATTGCAGCAAACCGAACGCGCGTTCCGCAAACAGCACGCGGTGGTTGTGGTGCGACGSizeHit CountTotal NormTotal
No Reads
droAna3
--------CTCTAAGTCTTTCTTT---CTTTTTT--TCAACATGGCTGATCAGGTAAGGTTTTCAAAAACGCGTGAAC-AAT-AAATGAAAATAAGGCAATGAA-GCAAGGAAATTGCGAAATGGA-----------------------AATGTGCAAGTAAGTTATTGCTTG--C-AAATCAATGGACTGGACGGTGAAATATTCTGGAAA--------------------------------------------------------------------CAATTCCAGGGAGTCAA---AGCAGATGCGCCCTAACCCTACTTTTGCACATGCTG------------TCTCACAATGTGTACACG----A--------------------AA---TGTATATTCCAGCAAACCGAACGAGCCTTTCGCAAGCAGCACGCGGTGGTTGTGGTGCGCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.......................T---CTTTTTT--TCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1912.002020000
................................TT--TCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2212.002020000
..............................TTTT--TCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2012.002020000
...................................................................................................................................................................................ATCAATGGACTGGACGGTGAA..................................................................................................................................................................................................................................................................2111.001010000
.............................TTTTT--TCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.....................TTT---CTTTTTT--TCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
................................................................................................................................................................................................................................................................................................................GATGCGCCCTAACCCTACTTTTGCAC................................................................................................................................2611.001010000
...........................................................................................................................................................................TG--C-AAATCAATGGACTGGACGGTGA...................................................................................................................................................................................................................................................................2511.001001000
............................TTTTTT--TCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...............................TTT--TCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000010
....................CTTT---CTTTTTT--TCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
..................................................................................................................................................................................AATCAATGGACTGGACGGT.....................................................................................................................................................................................................................................................................1911.001000010
....................CTTT---CTTTTTT--TCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGGTGGTTGTGGTGCGCC.2011.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGCCTTTCGCAAGCAGCACGCGGTG..............2811.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAACGAGCCTTTCGCAAGCAGC......................2611.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCTTTCGCAAGCAGCACGC..................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGGTTGTGGTGCGCC.1811.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCGGTGGTTGTGGTGCGCC.2111.001100000
...............................TTT--TCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...........................CTTTTTT--TCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................TTTTTT--TCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.................................T--TCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCTTTCGCAAGCAGCA.....................1911.001000001
...........................CTTTTTT--TCAACATGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................1820.501010000
droBip1
--------CTCTAAGTCTTTCTTT---CTTTTTT--TCAACATGGCTGATCAGGTAAGGTTTTTAAAAACGCGTTAAC-AAT-AAATGAAAATTAGGCGAGGAA-GCCTGGAAAAAGCGAAATGGGAACGGAAGA----GTGAGTGAT-TGCTT-------GCAAATCAATGG-AC-CGGACTGTGAAATATCT------------AGCAAACAAC-TG----A-A--------------------------------------------------------------GGGAGTCAG---AGAAGATGCGCCCTAACCCTACTTTTGCACATGCTG------------TCTCACAATGTGTACACG----A--------------------AA---TGTATATTCCAGCAAACTGAACGAGCTTTTCGCAAGCAGCACGCGGTTGTTGTGGTGCGCCGSizeHit CountTotal NormTotal
No Reads
dp5
------------------TTCTTTCTTTCTTTTGCTTCAAAATGGCTGATCAGGTAAGACTTT-CGGAAAATGTGTTGAAAT-TAATGATT-TATAGCGGTTTTAAGGCG---GATGTGAGGTAAA-------TTGATAGTGCCAGAT-GGAAAGTAAGTGAGTTGTGCGTGA-AT-AAACTTTGTATGGAGGG------------ATG---------------------------------------------TCAAGTGATGCGGAA-------GAAGAAA--C------TGTGG---TCCATGTTCAACCTAACCTTACTTTAGCGCATGGTA------------TCTGACAAAGTGTACACG----A--------------------AA---TGT--ATTCCAGCAAACTGAACGTGCATTCCGCAAACAACATGCGGTGGCCACTGTGCGGCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................TCTTTTGCTTCAAAATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2814.0040100000300
................................TGCTTCAAAATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2313.0030200000100
...............................................................................................................................................................TGAGTTGTGCGTGA-AT-AAACTTTG.................................................................................................................................................................................................................................................................................2412.0020000000020
..................................CTTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.......................................................................................................................................................................................................................................................................GCGGAA-------GAAGAAA--C------TGTGG---TCCAT.........................................................................................................................................................2411.0010000000001
............................CTTTTGCTTCAAAATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..............................TTTGCTTCAAAATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.......................................AAATGGCTGATCAGGTAAGACTTT-C.........................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
................................TGCTTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
...........................................GGCTGATCAGGTAAGACTTT-..........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010000
.................................GCTTCAAAATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
...........................TCTTTTGCTTCAAAATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACATGCGGTGGCCACTGTGCGGC.2811.0010010000000
..........................TTCTTTTGCTTCAAAATGGCTGATCAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
...........................TCTTTTGCTTCAAAATGGCTGATCAGG....................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
...................................TTCAAAATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................................................................................................................................................GAA-------GAAGAAA--C------TGTGG---TCCATGTT......................................................................................................................................................2411.0010100000000
..............................TTTGCTTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
..................................CTTCAAAATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................................................TAAGACTTT-CGGAAAATGTGTTGAAA.........................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCGGTGGCCACTGTG.....1811.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGTGGCCACTGTGCGGCG1911.0010100000000
.......................................AAATGGCTGATCAGGTAAGAC..............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
...................................TTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2130.6720010000001
....................................TCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2060.1710100000000
droPer2
------------------TTCTTTCTTTCTTTTGCTTCAAAATGGCTGATCAGGTAAGACTTT-CGGAAAATGTGTTGAAAT-TAATCATT-TATAGCGGTTTTAAGGCG---GATGTGAGGTAAA-------TACATAGTGGCAGAT-GGAAAGTAAGTGAGTTGAGCGTGA-AT-AAACTTTGTATAGAGGG------------ATG---------------------------------------------TCAAGTGATGCGGAA-------GAAGAAA--C------TGTGG---TCCATGTTCAACCTAACCTTACTTTAGCGCATGGTA------------TCTGACAAAGTGTACACG----A--------------------AA---TGT--ATTCCAGCAAACTGAACGTGCATTCCGCAAACAACATGCGGTGGCCACTGTGCGGCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................TTGCTTCAAAATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2013.003210000
..................................CTTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
..........................TTCTTTTGCTTCAAAATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2212.002200000
............................................GCTGATCAGGTAAGACTT............................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
......................................................................................................................................................GAAAGTAAGTGAGTTGAGC.................................................................................................................................................................................................................................................................................................1912.002200000
...................................TTCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2121.503300000
.................................GCTTCAAAATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................................................................................................................................................................................................................................................................................CAACCTAACCTTACTTTAGCGCATGGT...........................................................................................................................2711.001001000
..............................TTTGCTTCAAAATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.................................................................................................................................................................................................G------------ATG---------------------------------------------TCAAGTGATGCGGAA-------GAAGA.................................................................................................................................................................................2411.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAACTGAACGTGCAT..................................1911.001000001
......................TTCTTTCTTTTGCTTCAAAATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
..........................................................................................................................................AGTGGCAGAT-GGAAAGTA.............................................................................................................................................................................................................................................................................................................1811.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGCGGTGGCCACTGTGCGGC.2311.001000001
........................................AATGGCTGATCAGGTAAGACT.............................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGCGGTGGCCACTGTGCG...2211.001000001
....................................TCAAAATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2040.502200000
droWil2
------------------TTCTTT---CCTCTTGCTCCAACATGGCTGATCAGGTAAGGCGTA-AAAAT-GTGGTCAA-AATTAAATAAAT-TGAGTGCGATAAAGTGTA---AACATC-AGTGGA-------TTGAGCTGGACAAAG-AGTCAACAAGTGACTTGTGT-TGGAAG-ATA-TGCCGGATTGG----------------------------------------------A------TTG---ATGAGGAGTAATCCTAAT-------GCATCAT--C------GATGGA--GCCCGCTTCAACCTAACCCTACTTTCCAGCATGGTG------------TCTCAAGAACTGAAACAA----C--------------------TT---TTTATATTGTAGCAAACCGAGCGCGCTTTCCGCAAACAGCATGCGGTGCCAACCGTGCGTCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................CTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1916.00601041
..................TTCTTT---CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2613.00302010
.......................T---CCTCTTGCTCCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................2013.00302010
..........................................TGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................1813.00330000
...........................CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2013.00300030
.....................TTT---CCTCTTGCTCCAACATG..............................................................................................................................................................................................................................................................................................................................................................................................................................2012.00202000
...................................TCCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
..............................CTTGCTCCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200200
.....................TTT---CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2312.00200020
..................TTCTTT---CCTCTTGCTCCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2712.00211000
..................TTCTTT---CCTCTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2812.00202000
.......................T---CCTCTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2612.00201010
...................TCTTT---CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200020
...............................TTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
......................TT---CCTCTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
......................TT---CCTCTTGCTCCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..................................CTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...............................TTGCTCCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.................................GCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000
........................................CATGGCTGATCAGGTAAG................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...................................TCCAACATGGCTGATCAGGTAAGGCGTA-..........................................................................................................................................................................................................................................................................................................................................................................................................2811.00110000
...................TCTTT---CCTCTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
......................TT---CCTCTTGCTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
......................TT---CCTCTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
...................................TCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
....................CTTT---CCTCTTGCTCCAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
....................CTTT---CCTCTTGCTCCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
................................................ATCAGGTAAGGCGTA-AAAA......................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
...........................................................................................................GTA---AACATC-AGTGGA-------TTGA.................................................................................................................................................................................................................................................................................................................................1911.00100010
..................................CTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
...........................................GGCTGATCAGGTAAGGCGTA-AAAAT-G...................................................................................................................................................................................................................................................................................................................................................................................................2611.00100001
...........................................................................................................................................................................................ATTGG----------------------------------------------A------TTG---ATGAGGAGT......................................................................................................................................................................................................1811.00100010
....................CTTT---CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
........................................................................................................................................................CAACAAGTGACTTGTGT-TGGAA...........................................................................................................................................................................................................................................................................................2211.00100100
............................CTCTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
..................................CTCCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...........................CCTCTTGCTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
....................CTTT---CCTCTTGCTCCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
..............................................................................................................................................................................AG-ATA-TGCCGGATTGG----------------------------------------------A------TTG---ATGA...........................................................................................................................................................................................................2411.00100100
.............................TCTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
......................TT---CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.................................................................................................................AACATC-AGTGGA-------TTGAGCTG.............................................................................................................................................................................................................................................................................................................................2011.00100001
........................................................................................................................................................CAACAAGTGACTTGTGT-TGGA............................................................................................................................................................................................................................................................................................2111.00100010
....................................CCAACATGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..............................CTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......................................................................................AAAT-TGAGTGCGATAAAGT...............................................................................................................................................................................................................................................................................................................................................................1911.00100001
......................TT---CCTCTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
............................CTCTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
...............................................................................................................................................................................G-ATA-TGCCGGATTGG----------------------------------------------A------TTG---ATGA...........................................................................................................................................................................................................2311.00100010
...................................TCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2130.67200020
....................................CCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................1940.50200110
droVir3
------------------TTCTTT---CCTCTTGCTCCAACATGGCTGATCAGGTAAGGCAGC-AAAAATGTGTTCGA-AATTAAATAAAA-TACGGCATTTAATGCGCT---GCTATAAGATAAA-------TGCACTGTGAAATGT-GAAAT-TAAGTGCATTGTGAGTTG-AA-CTACACA----AT------------------------TGCTG-T------------GCAGCGCAATCATTGTGAGTGTATTGTTTGGGAAA-TCGAAATTCAACAG--CCAG---A-TAGGCCAGCATATTCAACCTAACCACACTTGCACGCATGCTTCGAACGCTGGTGTCTCACAATGTACACACT--CGGAATTTT-----ATT-------ATTATTATTATTATAGCAAACGGAACGTGCATTTCGCAAGCAGCACTCGGTGCCGACAACGCGTCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................CTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2115.005001300000000000000000000000000000000010000000000000000000000000
......................TT---CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2215.005003000000000000000000000000000000001000000000000000000000001000
..........................................TGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................1813.003010000000000000000000000000000000000000000000000000001000010000
.................................GCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2313.003001100000000000000000000000001000000000000000000000000000000000
................................TGCTCCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2113.003002000000000000000000000000000001000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACGGAACGTGCATTTCGCA............................2013.003002000000000000000000000000000000000000000000000000000000000100
..............................CTTGCTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................2012.002001000000000000001000000000000000000000000000000000000000000000
............................CTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000002000
.......................T---CCTCTTGCTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................2412.002001000000000000000000100000000000000000000000000000000000000000
..............................CTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2212.002001000000000000000000000000000000000010000000000000000000000000
....................................CCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................1812.002001000000000000000000000000000000000000000000000000000000001000
......................TT---CCTCTTGCTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................2512.002000000000000000000010010000000000000000000000000000000000000000
............................CTCTTGCTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000002
....................CTTT---CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2412.002000110000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................GTGAAATGT-GAAAT-TAAGTGCATT.....................................................................................................................................................................................................................................................................................................2412.002000000000000000000000000000000000000000000000000000000000002000
.......................................ACATGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2112.002010000000000000000000000000000000000000000000000000000000010000
..............................CTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000010000000000000000000000000000000000000000
......................TT---CCTCTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000100000000000000000000000000000000000000000
........................................CATGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
...............................TTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTGCCGACAACGCGT..2011.001000000000000000010000000000000000000000000000000000000000000000
..................................CTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................1611.001000000000000000000000000000000000000000000000000000000010000000
................................TGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000001000000000000000000000000000000000000000000000000
........................................CATGGCTGATCAGGTAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000100
............................CTCTTGCTCCAACATGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................3211.001000000000000000000000000000000000000000000000000001000000000000
...........................CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000010000000000000000000000000000000000000000
..............................CTTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................ACGGAACGTGCATTTCGCAAGC.........................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................CTTGCTCCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
............................CTCTTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................GCGCAATCATTGTGAGTG............................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...............................TTGCTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..................................CTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
.....................................................GTAAGGCAGC-AAAAATGTGTTCGA-...........................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
....................CTTT---CCTCTTGCTCCAACATGGCTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................CACACT--CGGAATTTT-----ATT-------ATTATTAT..........................................................2611.001000000000000000000000000000010000000000000000000000000000000000
...........................CCTCTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................TCGAAATTCAACAG--CCAG---A-TAGGCC..............................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGAACGTGCATTTCGCAC...........................2311.001000000000000001000000000000000000000000000000000000000000000000
........................................................................................................................................ACTGTGAAATGT-GAAAT-TAA............................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000010000000000000000000000000000
.............................TCTTGCTCCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCACTCGGTGCCGACAACGCGTC.2711.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCAGCACTCGGTGCCGA..........1911.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAACGGAACGTGCATTTCGCA............................2411.001000000000000000000000000000000000000000000000000000000000000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGCAAGCAGCACTCG.................1811.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCATTTCGCAAGCAGCACTCGGTGCC............2811.001000000000000001000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TTATTATAGCAAACGGAAC........................................1911.001000000000000000000000000010000000000000000000000000000000000000
............................CTCTTGCTCCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TACACA----AT------------------------TGCTG-T------------GCAGCGCAATCA.....................................................................................................................................................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGAACGTGCATTTCGCA............................2311.001000000000000000001000000000000000000000000000000000000000000000
....................CTTT---CCTCTTGCTCCAACATGGCTGAT........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000001000
......................................................................................................................................................AAAT-TAAGTGCATTGTGAGTTG-............................................................................................................................................................................................................................................................................................2211.001000010000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGAACGTGCATTTCGCAA...........................2411.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACGGAACGTGCATTTCG..............................1811.001000000000000000001000000000000000000000000000000000000000000000
...................................TCCAACATGGCTGATCAGGTAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000100000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGGTGCCGACAACGCG...1911.001000000000000000010000000000000000000000000000000000000000000000
............................CTCTTGCTCCAACATGGCTGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000001
........................................................................................................................................................................................................................................................................................................................................................................................................................CAAACGGAACGTGCATTTCGCAA...........................2311.001000000000000000000010000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCACTCGGTGCCGACAACGCG...2511.001000000000000000000010000000000000000000000000000000000000000000
...............................TTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................TCTTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000001000000000000000000000000000000000
.........................................ATGGCTGATCAGGTAAGG...............................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................CTCACAATGTACACACT--CGGAA.....................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...................TCTTT---CCTCTTGCTCCAACA................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................TTT---CCTCTTGCTCCAACATGGCC...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
..................TTCTTT---CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................GCAAACGGAACGTGCATTTC...............................2011.001000000000000000000010000000000000000000000000000000000000000000
...........................CCTCTTGCTCCAACATGGC............................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
------------------TTCTTT---CCTCTTGCTCCAACATGGCTGATCAGGTAAGGCAGC-AAAAATGTGTTCGA-AATTAAATAAAA-TACGTCAGTTATAGCATT---GCTATAAAACAAA-------TTTAATGTGAAATGT-GAAATAT-GGTGCATTGTGAGTTG-AG-CAATACAT----T------------------------TACTG-T------------ATACCA------TTG--AATGTGTTGTTTTCCAAAAAGGAGAAGCAACAG--CGAG---TGAGG---CTCACATTCAACCTAACCACACTTCTACGCATGCTG------------TTTACGCTGCTAAATACACTTGGAATTTG-----ACT-------A---TTATTTTTGTAGCAAACAGAACGCGCATTTCGCAAGCAACACTCAGTGCCGACAATACGACGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................CTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2212.002101000
................................TGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2412.002200000
...............................TTGCTCCAACATGGCTGATCAGAAC..................................................................................................................................................................................................................................................................................................................................................................................................................2512.002100010
......................................................TAAGGCAGC-AAAAATGTGT................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
.....................TTT---CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...................................TCCAACATGGCTGATCAGGC...................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
.....................................................GTAAGGCAGC-AAAAATGTGTTCGA-...........................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
...............................TTGCTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
.................................................................................................................................................................................................................................................................................................................ATTCAACCTAACCACACTT......................................................................................................................................1911.001100000
..............................................................................................CGTCAGTTATAGCATT---GC.......................................................................................................................................................................................................................................................................................................................................................1811.001000010
.........................................ATGGCTGATCAGGTAAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
..................................CTCCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.......................T---CCTCTTGCTCCAACATGGCTGATCAGA....................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
................................TGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................................................................................................................................................................................................................................................................GCAACAG--CGAG---TGAGG---CTG...........................................................................................................................................................1911.001000001
............................CTCTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTCAGTGCCGACAATACGAC.2211.001100000
..............................CTTGCTCCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
.....................................................................................................................................................................................................................................................................TTCCAAAAAGGAGAAGCAACAG--CGAG---T.....................................................................................................................................................................2711.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AACAGAACGCGCATTTCGCAAGC.........................2311.001100000
..........................................TGGCTGATCAGGTAAGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................CTTGCTCCAACATGGCTGATCAGAA...................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................GAACGCGCATTTCGCAAGCAACACTCAG................2811.001100000
....................CTTT---CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.....................................................GTAAGGCAGC-AAAAATGTGTTCG.............................................................................................................................................................................................................................................................................................................................................................................................2311.001000001
...........................................GGCTGATCAGGTAAGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
.............................TCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
...................................................AGGTAAGGCAGC-AAAAATG...................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
......................TT---CCTCTTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
............................................GCTGATCAGGTAAGGCAGC-AAAAATGTG.................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
..................................CTCCAACATGGCTGATCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000010
...............................TTGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
............................CTCTTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
droGri2
------------------TTCTTT---CCTCTTGCTCCAACATGGCTGATCAGGTAAGGCACC-AAAAGTGTGTTCGA-AATTAAATAAAA-TACAGCATTTAATGCGCT---ACACTATGATACA-------ACCAAAGTGAATTGT-GAAGT-TAAGTGTGTTGTGAGTAC-AC-CCAGACA----ATAA------------------------------------TTTTTACAGTACAAGCACTGCAAGTGCATTGTTTGGCAAA-GACAAATTTACAAC--TCAG---CTCAT-CGAG--CATTCAACCTAACCAAACTTTTAGGCATGCTG--A------A--TATCTCACAACACACACA----AAATGTGGAATAGCTATTTATTTTGA--TTGGTTGTAGCAAATGGAACGTGCGTTTTGCAAACAAAATGCGGTGCCGACAACGCGTCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........................CCTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................2013.00321
......................TT---CCTCTTGCTCCAACATGGCTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110
............................CTCTTGCTCCAACATGGCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
...............................TTGCTCCAACATGGCTGATCA......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
............................CTCTTGCTCCAACATGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110
.................................GCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................1820.50110
................................TGCTCCAACATGGCTGATC.......................................................................................................................................................................................................................................................................................................................................................................................................................1920.50110

Generated: 05/17/2015 at 10:26 PM