ID:

dse_638

 Coordinate:

scaffold_1:3993797-3993947 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.3 -12.9 -12.9

Flybase annnotation

exon [dsec_GLEANR_3333:1]; CDS [Dsec\GM20514-cds]; intron [Dsec\GM20514-in]

No Repeatable elements found

Sense Strand Reads

----##############################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GACCATGCAGTTGAATTTGGTCCGCAATGGCAACACTTTCGAGTCGTATAGTTAAAATGTTAAAAAAAAGCATGTGATAAATTTCAATATAATTTGATTAACAATTTACTAACACAAAATCCCTAAAACACACACCAAAAACGTTCGCAGGCGATTAGTTCGAGTTTGAGAACAGATTGAGATGGACGTGAAATATTTTTCGAGAAATTGTACTAACCCAGATAACTCTATTTCTACTAATATGTATCTTA
********************************************************************************************************************************************(((((((....(((((.((((........)))).)))))...)))))))..************************************************************ 		Read size # Mismatch Hit Count Total Norm Total V113
male body		 V114
embryo
 V115
head
 M054
female body
....................................................................................................................................................AGGCGATTAGTTCGAGTTTGGG................................................................................. 22 1 1 1.00 1 0 0 1 0
..........................................................................................................................................................................AACAGATTGAGATGGACGTGA............................................................ 21 0 1 1.00 1 1 0 0 0
....................................................................................................................................................................TTTGAGAACAGATTGAGATGGA................................................................. 22 0 1 1.00 1 1 0 0 0
........................................................................................................................................................................AGAACAGATTGAGATGGA................................................................. 18 0 1 1.00 1 0 1 0 0
.....TGTAGTTGAATTTGGTCCGCAATG.............................................................................................................................................................................................................................. 24 1 1 1.00 1 0 1 0 0
...........................................................................................................................................................................ACAGATTGAGATGGACGTGAAATATTTTT................................................... 29 0 1 1.00 1 1 0 0 0
.................................................................................................................................................................................TGAGATGGACGTGAAATATTTTT................................................... 23 0 1 1.00 1 0 1 0 0
.........................................................................................................................................................................GAACAGATTGAGATGGACGT.............................................................. 20 0 1 1.00 1 0 1 0 0
............................................................................................................................................ACGTTCGCAGGCGATTAGTT........................................................................................... 20 0 1 1.00 1 0 1 0 0
................................................................................................................................................................CGAGTTTGAGAACAGATTGAGATG................................................................... 24 0 1 1.00 1 1 0 0 0
....................................TTTCGAGTCGTATAGTTAA.................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0
......................................................................................................................ATCCCTCAAACACACACCAA................................................................................................................. 20 1 1 1.00 1 0 0 0 1
................................................................................................................................................................CGAGTTTGAGAACAGATTGAGATGGA................................................................. 26 0 1 1.00 1 1 0 0 0
..........................................................................................................................................................................AACAGATTGAGATGGACGTG............................................................. 20 0 1 1.00 1 0 1 0 0
........................................................................................................................................................................AGAACAGATTGAGATGGACGTGA............................................................ 23 0 1 1.00 1 1 0 0 0
........................................................................................................................................................GATTAGTTCGAGTTTGAGA................................................................................ 19 0 1 1.00 1 1 0 0 0
......GCAGTTGAATTTGGTCCGCA................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0
.............................................................................................................................................................................AGATTGAGATGGACGTGAAAT......................................................... 21 0 1 1.00 1 1 0 0 0
...............................................................................................................................................................................ATTAAGTTGGAGGTGAAATATT...................................................... 22 3 2 0.50 1 1 0 0 0
.............................................................................................................................................................................AGATTGAGATGGACGTGAAAACA....................................................... 23 3 2 0.50 1 0 0 0 1
..................GGTCAGCAATGGCAGCGCTTT.................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0
....ATGCAGATGAATTTAGTC..................................................................................................................................................................................................................................... 18 2 5 0.20 1 0 1 0 0
...CATGAAGTTGTATCTGGTCC.................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0
.....................................................................................................................................ACCAAAATCGTGCGCAAGCG.................................................................................................. 20 3 11 0.09 1 1 0 0 0

Anti-sense strand reads

CTGGTACGTCAACTTAAACCAGGCGTTACCGTTGTGAAAGCTCAGCATATCAATTTTACAATTTTTTTTCGTACACTATTTAAAGTTATATTAAACTAATTGTTAAATGATTGTGTTTTAGGGATTTTGTGTGTGGTTTTTGCAAGCGTCCGCTAATCAAGCTCAAACTCTTGTCTAACTCTACCTGCACTTTATAAAAAGCTCTTTAACATGATTGGGTCTATTGAGATAAAGATGATTATACATAGAAT
************************************************************(((((((....(((((.((((........)))).)))))...)))))))..******************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M054
female body
 V115
head
.............................................................................................................................................................CAAGTTGAAACTCTGGTCTA.......................................................................... 20 3 9 0.11 1 0 1
..................................................................................................................................................................................................................................TGATAAAGATGATGATACA...... 19 2 10 0.10 1 1 0
............................................................ATTGTTTTTAGTACACTTTTTA......................................................................................................................................................................... 22 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSec2 scaffold_1:3993747-3993997 - dse_638 GACCATGCAGTT------GAATTTGGTCCG-----CAA--T--------------------------G-------GCAACACTTTCGAGTCG---TATAGTTAAAA-------TGTT------------------------AAA--AAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAAC-----------------------AATTTACTAACAC-----AA---AATCCC-T--AAA-----ACACAC--------ACC--------AA---------------------------------------------------AAACGTTCG---------------CAGGCGATTAGTTCGAGTTTGAGAACAGAT-TGAGATGGAC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------
droSim2 2r:7150214-7150463 - GACCATGCAGTT------GAATTTGGTCCG-----CAA--T--------------------------G-------GCAACACTTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------TAA--AAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAAC-----------------------AATTTACTAACAC-----AA---AATCCC-C--AAA-----ACACAC--------CCC--------AA---------------------------------------------------AAACGTTCG---------------CAGGCGATTAGTTCGAGTTTGAGAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------
dm3 chr2R:6381949-6382216 - GACCATGCAGTT------GAATTTGGTCCG-----CAA--T--------------------------G-------GCAACACTTTCGAGTCG---TATAGTTAAAA-------TGTTT-----------------------AAA--AAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAAC-----------------------AATTTACTAACAC-----AA---AATCCC-C--AGA-----ACACAC--------CCC--------AA---------------------------------------------------AAACGTTCG---------------CAGGCGATAAGTTCAAGTTTGAGAACAGAT-TGAGATGGA--------------------------------------------------------ATATTC-------A-------------------------------ATTCAATA---------------T-----CGTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------
droEre2 scaffold_4845:19370219-19370476 + GACCATGCAGTT------GTATTTGGTCCG-----AAA--T--------------------------G-------GCAACACTTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------TAA--AAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAAC-----------------------AATTTACTAACAC-----AA---AAATCA-C--CAA-----ACACACCAAAACACCCC--------AA---------------------------------------------------ACACGTTCG---------------CAGTCGATTAGTTCGAGTTTGAGAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------
droYak3 2R:2758242-2758494 + GACCATGCAGTT------GAATTTGGTCCG-----AAA--T--------------------------G-------GCAAAACTTTCGAGTCG--TTATAGTTAAAA-------TGTT------------------------AAA--AAA-AAGCATGTGATAAATTTTAATATAAT-TTGATTAAT-----------------------AATTTACTAACAC-----TA---AATCAC-C--A-A-----ACACAC--------CCCCCC-----AA---------------------------------------------------ACATGTTCG---------------CAG-CGATTCGTTCGAGTTTGAGAACAA-TATGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------
droEug1 scf7180000409672:4633155-4633478 + GC----------------TAATTTGGTCCG---AGAAA--T--------------------------G-------GCAAAAATTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCTATATAAT-TTGATTAAC-----------------------AATTTACTAACAC-----TA---AATGCCCTTCAAA-----CCACCC--------CCC--C---CCC--CCCAAAAAAAAAAACAAATACAGACAGTTTGCATAC-----------------------------TACTG------------------GAGT------------------TAGTCGTTGTTA---C----T-----------------------------AGA---------------------------GTATGTACTACTACAATGCGAACGATTACCATACAAAAAAATTAATGAA-AAGAAGTGAAATATTTTTGGAGAAATTGTACTAACAC-CCAGAAGATAACTCTATTTCTACTAA-TAT--GTATCTTTA--------------TTAA--------------------------------------------------------
droBia1 scf7180000301506:80721-81039 - GACCATGCAAAC------AATTTTGGTCCC---G-GAG--T--------------------------G-------GCAAAACTTTCGAGTCG---TATAGTTAAAA-------AGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAACAAA-------------------CAATTTACTAACAC-----AA---AGTCCC-C--AAAAAA-AACACAT--------CCCG-------AA------------AAACAAACGCAGGCAGTTCGCATATG----TACAAACAC--------------CTAATGG-------CTATTAGTTCAAGTTTGAG--C--------------CG---TTT---C----T------------------CTG--------AGT---------------------------GTATGTA---------TGTGGGCGAATACCATA---------------A---GAAGTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTTTA--------------TTAA--------------------------------------------------------
droTak1 scf7180000415683:56340-56661 + GACCATGCAAGC------AATTTTGGTCCG-----AAA--T--------------------------G-------GCAAAACTTTCGAGTCG---TATAGTTAAAA-------AGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAACAAA-------------------CAATTTACTAACAC-----AA---AATCCC-C--ACA-----A--CAT--------CCC--TAAA------------------ACAAACGCAGACAGTTCGCATATG----T-------C--------------CAAATGGCGCCAGGAAATT-GTTCGGGT-TGAGAACGGGC-TAAGATAGCCG---TTA---C----C-------------------AG---------GC---------------------------ATATGTA---------TGTGGGCAAATAGCATA---------------A---AAAGTAAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTTTA--------------ATAA--------------------------------------------------------
droEle1 scf7180000491349:1071875-1072207 + GACCATGCAAGCGAATGCGAATTGGGTCCG-----AAA--T--------------------------G-------GCAAAACTTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTTAATATAAT-TTGATTAACAAA-------------------CAATTTACTAACAC-----AA---AGTCCC-C--AAA-----ACACTC--------CCC--------AA-----------------ACCGCAGACAGTTCGCATATATA--TACAGACAC--------------CAAATGGAGCCAGGCGATTAGTTCGAGTTTGAGAACGAAT-TAAGATAGTCG---GGA---T----T-------------------A---------------------------------------GTATGTA---------TGTGGGCAGATACCATA---------------A---AAAATGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---ATCTCTATTTCTACTAA-TAT--GTATCTTTA--------------TTAA--------------------------------------------------------
droRho1 scf7180000779999:381097-381418 + GACCATGCAAGC------GAATTTGGTCCG-----AAA--T--------------------------G-------GCAA-ACTTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTTAATATAAT-TTGATTAACAAA-------------------CAATTTACTAACAC-----AA---AGTCCC-C--A-A-----ACACAC--------CCC--------GA-----------------ACCGCAGACAGTTCGCATATA----TACAGACAC--------------CAAATGGCGCCAGGTGATTAGTTCGAGTTTGAGAACGAAT-TA-AATAATCG---GGA---T----T-------------------A---------------------------------------GTATGTA---------TGTGGGCAATTACCTTA---------------A---AATATGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTTTA--------------TTAA--------------------------------------------------------
droFic1 scf7180000454066:1300780-1301089 + GACCATAGAAGA------GAATTTGGTCCG-----AAA--T--------------------------G-------GCAAAACTTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAACAAA-------------------CAATTTACTAACAC-----AA---AATCCC-C--CAAATA-AACACAC--------CCC--------GA--------A-----AGAAACGCAGACAGTTCGCATA----------------------------------------------TTTGTTCGAGTTCGAGAACGGAT-TTAGATAGTCGACGGGA---C----TAAA--------------------------------------------------------GTTAGTA---------TGTGAGCGATAACCATA---------------A---AAAGTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTTTA--------------TTAA--------------------------------------------------------
droKik1 scf7180000302406:99763-100040 - G-------------------------TCCG-----AAA--T--------------GTT---------G-------GCAGAGCTTTCGAGTCGAGTTATAGTTAAAA-------TGT-------------------------AAAGAGAA-AGGCATGTGATAAATTTCAATATAAT-TTGATTAACAAACAAACAA-ACAAACA--ATCTATCTACTAACAC-----AAATAAA-CCC-TTTAGA-----ACACAC--------CCA------AGATACA------------GAAAGGCAGACGG--------------------------------------------------------------------AGG-----------AAGG------------------------------------------------GTGTGTGTATAAC--------------------------------------------CCATA--------------AA---AAAGTGAAATATTTTTCGAGAAATTGTACTAACACCCCAGATAACAACTCTAT-TCTACTAA-TATGTGTATCCTTA--------------TTAA-T-TAA--------------------------------------------------
droAna3 scaffold_13266:17854612-17854936 - TACCA-GCAATT-------TCTTTGGTCCA---A-AAA--T--------------------------G-------GCGATACTTTCGAGTCG---TATAGTTAAAA-------TTT-------------------------AAA--GGA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAACAAACA------------------AATTTACTAACAA-----AA---AACA--ATTAAGC-----CCACAC--------CCC--C---ACA--CACA--AAATAAAACA---ACAGATAATTTACATACATATAT-----------------GGATGGAAATGTA-------TATCTATGTAAGTTTGAA--CT----------------TGTTT---TTTTTTT-----------------------------G-------GCGACCCAAGCTTA------------------------------AAATAAAATA---------------T---A--AAGAAATATTTTTCGAGAAATTGTACTAAC---ACAGAAGATAACTCTATTTCTACTAA-CAT--GTATCCTTA--------------TTAA--------------------------------------------------------
droBip1 scf7180000396735:1118793-1119121 - TACCA-GCAATT-------TCTTTGGTCCA---AAAAA--T--------------------------G-------GCGAAACTTTCGAGTCG---TATAGTTAAAA-------TTT-------------------------AAA--GGA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAACAAACA------------------AATTTACTAACAAAACAAAAAAAAA-CA-ATTTAGC---CCACACCC--------CCC------ACAAACACA--AAAGAAAACA---ATTGAGAATTTACATATA----T-----------------GGGAAAAAATAGA-------TATATATGTGAGTTTGAA--TT----------------TGTTT---T----TT-----------------------------G-------GCAACCCAAGCTTA------------------------------AAATAAAATA---------------T---A--AAGAAATATTTTTCGAGAAATTGTACTAAC---ACAGATGATAACTCTATTTCTACTAA-CAT--GTATCCTTA--------------TTAA--------------------------------------------------------
dp5 3:16224346-16224697 + TACCATAC--TC------GTATGTGGTCCA-----TAA--T--------------------------G-------GCAA-GCTTTCGAGTCG---TATAGTTAAAG-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCTATATAAT-TTGATTAACAAAAAAAAAAGAAAAA------CAATTTACTAACAC-----AA---ACCCCC-T--T-------ACACAC--------ACCAACAAA----------------A-CAAAATACAGACAGCTAGCACATA----GGCAAACA------------------------------------TCAAAGTTTGAG--CAGAT-TTAGATGGGTG---GGAGGCC----TATTGCGAAAAGATACTACCTGGCCGTACCATTGTATGTAAAA---------------------------------CATAGACACATA-----------CATCCAAGAA---AAAGTGAAATATTTTTCGAGAACTTGTACTAAC---CCAGAT---AACTCTTTTTCTACTAA-T----GTATTCTT------------------A--------------------------------------------------------
droPer2 scaffold_4:540330-540679 - TACCATAC--TC------GTATGTGGTCCA-----TAA--T--------------------------G-------GCAA-GCTTTCGAGTCG---TATAGTTAAAG-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCTATATAAT-TTGATTAACAAAAAAA--AGAAAAA------CAATTTACTAACAC-----AA---ACCCCC-T--T-------ACACAC--------ACCAACAAA----------------A-CACAATACAGACAGCTAGCACATA----GGCAACCA------------------------------------TCAAAGTTTGAG--CAGAT-TTAGATGGGTG---GGAGGCC----TATTGCGAAAAGATACTACCTGGCCGTACCATTGTATGTAAAA---------------------------------CATAGACACATA-----------CATCCAAGAA---AAAGTGAAATATTTTTCGAGAACTTGTACTAAC---CCAGAT---AACTCTTTTTCTATTAA-T----GTATTCTT------------------A--------------------------------------------------------
droWil2 scf2_1100000004382:276181-276548 - AAACAAAT--------------TTGT-C---------------------------------------ATTAGATGA-----C--TTGAGTTGAG-TGTAGTTAAAAAA-----GGA-------------------------AAA--GAAAGAGCATGTGATAAAT-TCAATATAATTTTGATTAACAAACAAACAA-AAAAAAGAGAAAAAACTACTAACAC-----AC---AC---A-C--AAA-----ACACAC--------ACA--------------------------------------------TATA----CACACACACACACTTTTG---------------CAGGCAA---------------------AT-CTACA----C----------------------------------------------------GTGAAACCT-------AACTAACTATCTTA---------TCTAACTAACTATC-TA---------------TAA-A-GAAAACATATTTTTCGAGAAATTGTACCAACTAGGCAAA--GTGAAACTATTTA-ACTAAATCT--GTATGTATGTATGTATATGTACGATAAATGTAACTGTATCTAGCAATTTTTCATTTTGTTTTTGTTGCCTTTATTGTTTTTTT
droVir3 scaffold_12875:16351156-16351345 - TAATATATATTT------ATATATATTCAATATATAAATGTGGCAAATGCAAGACACAAGCCTA-GCG-------TTC-GACT-TTGGGTCA---TATAGTTAAAAA-----GTGTTAAAGAAGAAGAAAACCATGGAAATAAT--GAA-GAGCATGTGATAAAT-TCAATATAATTTTGATTAACAAA-------------------CAATTTACTAACAC-----GC---AACACA-------------CACAC--------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6496:7405237-7405421 + GTATGTGTAAAT------G----TAGCTAA-----TAC--T----------AGA--CAAGCCTAGGCA-------TTG-GAC-TTTGAGTCA---TATAGTTAAAAAAAAAAGTGTTACAGAAGAAGAAAATAATGGAAATAAT--GAA-GAGCATGTGATAAAT-TCAATATAATTTTGATTAACAAC-------------------CAATTTACTAACAC-----AC---ACACAC-A-------------CAC--------ACA-------------TA--GA-----GGAAAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15245:5208011-5208157 - GCCTA-GC-----------------------------------------------------------G-------ATA-GACT-TTGAGTCA---TATAGTTAAAAAAAA--ATGTA---AAAGAAGAAAACAATGG---------AAA-GAGCATGTGATAAAT-TCAATATAATTTTGATTAACAAC-------------------CGATTTACTAACAT-----GC---AACA---T--AAC-----A--CATA------CAAC--TAAA------------------ACACACACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSec2
GACCATGCAGTT------GAATTTGGTCCG-----CAA--T--------------------------G-------GCAACACTTTCGAGTCG---TATAGTTAAAA-------TGTT------------------------AAA--AAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAAC-----------------------AATTTACTAACAC-----AA---AATCCC-T--AAA-----ACACAC--------ACC--------AA---------------------------------------------------AAACGTTCG---------------CAGGCGATTAGTTCGAGTTTGAGAACAGAT-TGAGATGGAC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................AACAGAT-TGAGATGGAC----------------------------------------------------------------------------------------------------------------------------------GTGA................................................................................................................................................2111.0010100
.................................................................................................................................................................................................................................................................................................................................................................................TTTGAGAACAGAT-TGAGATGGA.......................................................................................................................................................................................................................................................................................2211.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................AGAACAGAT-TGAGATGGA.......................................................................................................................................................................................................................................................................................1811.0010010
........................................................................................................................................................................................................................................................................................................................................................................................ACAGAT-TGAGATGGAC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTT.......................................................................................................................................2911.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................TGAGATGGAC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTT.......................................................................................................................................2311.0010010
......................................................................................................................................................................................................................................................................................................................................................................................GAACAGAT-TGAGATGGAC----------------------------------------------------------------------------------------------------------------------------------GT..................................................................................................................................................2011.0010010
..........................................................................................................................................................................................................................................................................................................................................ACGTTCG---------------CAGGCGATTAGTT..................................................................................................................................................................................................................................................................................................................2011.0010010
.............................................................................................................................................................................................................................................................................................................................................................................CGAGTTTGAGAACAGAT-TGAGATG.........................................................................................................................................................................................................................................................................................2411.0010100
..................................................................................TTTCGAGTCG---TATAGTTAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100
.............................................................................................................................................................................................................................................................................................................................................................................CGAGTTTGAGAACAGAT-TGAGATGGA.......................................................................................................................................................................................................................................................................................2611.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................AACAGAT-TGAGATGGAC----------------------------------------------------------------------------------------------------------------------------------GTG.................................................................................................................................................2011.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................AGAACAGAT-TGAGATGGAC----------------------------------------------------------------------------------------------------------------------------------GTGA................................................................................................................................................2311.0010100
.....................................................................................................................................................................................................................................................................................................................................................................GATTAGTTCGAGTTTGAGA.......................................................................................................................................................................................................................................................................................................1911.0010100
......GCAGTT------GAATTTGGTCCG-----CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
..........................................................................................................................................................................................................................................................................................................................................................................................AGAT-TGAGATGGAC----------------------------------------------------------------------------------------------------------------------------------GTGAAAT.............................................................................................................................................2111.0010100
..........................................................................................................................................................................................................................................................................................................................................................................................AGAT-TGAGATGGAC----------------------------------------------------------------------------------------------------------------------------------GTGAAAACA...........................................................................................................................................2320.5011000
droSim2
GACCATGCAGTT------GAATTTGGTCCG-----CAA--T--------------------------G-------GCAACACTTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------TAA--AAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAAC-----------------------AATTTACTAACAC-----AA---AATCCC-C--AAA-----ACACAC--------CCC--------AA---------------------------------------------------AAACGTTCG---------------CAGGCGATTAGTTCGAGTTTGAGAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................TCGAGTTTGAGAACAGAT-TGAGATGGT.......................................................................................................................................................................................................................................................................................2712.00200000020000000000
...........T------GAATTTGGTCCG-----CAA--T--------------------------G-------GCAACACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000011000000000
...........................................................................................................................................................................................................................................................................................................................................................................TTCGAGTTTGAGAACAGAT-TGAGATGGT.......................................................................................................................................................................................................................................................................................2812.00200000010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................TGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGAAAT...............................................................................................................................2611.00100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................GAGTTTGAGAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GT..................................................................................................................................................2811.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................TTGAGAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAA...............................................................................................................................................2711.00100000001000000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGA..................................................................................................................................2811.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................TAGTTCGAGTTTGAGAACAGAT-TG..............................................................................................................................................................................................................................................................................................2411.00100000000001000000
.................................................................................................TAGTTAAAA-------TGT-------------------------TAA--AA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTAAC---CCAGAT---AACTCT....................................................................................................2011.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................GAGAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GC..................................................................................................................................................2211.00101000000000000000
..........................................................................................................................................................................................................................................................ACACAC--------CCC--------AA---------------------------------------------------AAACGTTCG---------------CAGGC..........................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................T-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAAT.............................................................................................................................................1811.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTC......................................................................................................................................2111.00100010000000000000
dm3
GACCATGCAGTT------GAATTTGGTCCG-----CAA--T--------------------------G-------GCAACACTTTCGAGTCG---TATAGTTAAAA-------TGTTT-----------------------AAA--AAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAAC-----------------------AATTTACTAACAC-----AA---AATCCC-C--AGA-----ACACAC--------CCC--------AA---------------------------------------------------AAACGTTCG---------------CAGGCGATAAGTTCAAGTTTGAGAACAGAT-TGAGATGGA--------------------------------------------------------ATATTC-------A-------------------------------ATTCAATA---------------T-----CGTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...........................................................................................................................................................................................................................................CCC-C--AGA-----ACACAC--------CCC--------AA---------------------------------------------------AAACGTTCG---------------CAA............................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AGTT------GAATTTGGTCCG-----CAA--T--------------------------G-------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTTGGTCCG-----CAA--T--------------------------G-------GCAACACTTTCGAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................AACAC-----AA---AATCCC-C--AGA-----A....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....TGCAGTT------GAATTTGGTCCG-----CAA--T--------------------------G-------GCAAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................CCG-----CAA--T--------------------------G-------GCAACACTTTCGAGTCG---TAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAC---CCAGAT---AACTCTATTTC...............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................A--T--------------------------G-------GCAACACTTTCGAGTCG---TATAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGAGAAATTGTACTAAC---CCAGAT---..........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................C-----------------------AATTTACTAACAC-----AA---AATCCC-C--AGA-----A....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................TTGATTAAC-----------------------AATTTACTAACAC-----AA---AA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TTTGGTCCG-----CAA--T--------------------------G-------GCAACACTTTCGAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........T------GAATTTGGTCCG-----CAA--T--------------------------G-------GCAACACTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................CACAC--------CCC--------AA---------------------------------------------------AAACGTTCG---------------CAGGCGC........................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTACTAAC---CCAGAT---AACTCTATT.................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................TCAAGTTTGAGAACAGAT-TGAGATGG........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCGAGAAATTGTACTAAC---CCAGAT---A.........................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.....................................................................................................................................................................................................................TACTAACAC-----AA---AATCCC-C--AGA-----ACACAC--------CC.....................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................AATCCC-C--AGA-----ACACAC--------CCC--------AA---------------------------------------------------AAACGT.................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droEre2
GACCATGCAGTT------GTATTTGGTCCG-----AAA--T--------------------------G-------GCAACACTTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------TAA--AAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAAC-----------------------AATTTACTAACAC-----AA---AAATCA-C--CAA-----ACACACCAAAACACCCC--------AA---------------------------------------------------ACACGTTCG---------------CAGTCGATTAGTTCGAGTTTGAGAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................GAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GT..................................................................................................................................................2014.0040000400
.......................................................................................................................................................................................................................................................................................................................................................................................AACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATAT...........................................................................................................................................2613.0030000300
......................................................................................................................................................................................................................................................................................................................................................................................GAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATT..........................................................................................................................................2812.0020000200
.........................................................................................................................................................................................................................................................................................................................................................................................CAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATAT...........................................................................................................................................2411.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................AACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATA............................................................................................................................................2511.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................GAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAAT.............................................................................................................................................2511.0010000100
...........................................................................................................................................................................................................................................................................................................................................................................................GAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATAT...........................................................................................................................................2211.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................GAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................1811.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................GAGAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAA..............................................................................................................................................2611.0010000100
..................................................................................................................................................................................................................................................................................................................................................................GTCGATTAGTTCGAGTTTGAGAACA....................................................................................................................................................................................................................................................................................................2511.0010001000
..........TT------GTATTTGGTCCG-----AAA--T--------------------------G-------GCAACACT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001
.......................TGGTCCG-----AAA--T--------------------------G-------GCAACACTTTCGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010001000
..................................................................................................................................................................................................................................................................AAACACCCC--------AA---------------------------------------------------ACACGTTCG---------------CAGTCGATT......................................................................................................................................................................................................................................................................................................................2911.0011000000
.......CAGTT------GTATTTGGTCCG-----A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................CAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTT.........................................................................................................................................2611.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................GAACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAA..............................................................................................................................................2411.0010000100
..................................................................................................................................................................................................................................................................................................................................................................GTCGATTAGTTCGAGTTTGAGAACAGAT-................................................................................................................................................................................................................................................................................................2811.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATAT...........................................................................................................................................1911.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................AACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GT..................................................................................................................................................1911.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................AACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAAT.............................................................................................................................................2411.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................AACAGAT-TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATT..........................................................................................................................................2711.0010000100
.....................................................................................................................................................................................................................................................................................................................................................................GATTAGTTCGAGTTTGAGAACAG...................................................................................................................................................................................................................................................................................................2311.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................TGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTT.......................................................................................................................................2311.0010000100
droYak3
GACCATGCAGTT------GAATTTGGTCCG-----AAA--T--------------------------G-------GCAAAACTTTCGAGTCG--TTATAGTTAAAA-------TGTT------------------------AAA--AAA-AAGCATGTGATAAATTTTAATATAAT-TTGATTAAT-----------------------AATTTACTAACAC-----TA---AATCAC-C--A-A-----ACACAC--------CCCCCC-----AA---------------------------------------------------ACATGTTCG---------------CAG-CGATTCGTTCGAGTTTGAGAACAA-TATGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTT-------------------A--------------------------------------------------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................GTTCG---------------CAG-CGATTCGTTCGAGTT............................................................................................................................................................................................................................................................................................................2311.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................ACAA-TATGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAA...............................................................................................................................................2111.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................CAA-TATGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAAT.............................................................................................................................................2211.00100000010000
....................................................................................................................................................................................................................................................................................A---------------------------------------------------ACATGTTCG---------------CAG-CGATTCGTTC.................................................................................................................................................................................................................................................................................................................2311.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................AGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGA....................................................................................................................................2411.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................GAACAA-TATGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAA...............................................................................................................................................2311.00100000010000
......................................................................................................................................................................................................................................................................................................................................................................................GAACAA-TATGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAAT.............................................................................................................................................2511.00100000010000
..........................................................................................................................................................................................................................................................................................................................................ATGTTCG---------------CAG-CGATTCGTT..................................................................................................................................................................................................................................................................................................................1911.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AACAA-TATGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GT..................................................................................................................................................1911.00100000010000
............................................................................................................................................................................................................................................................................................................................................GTTCG---------------CAG-CGATTCGTTCGA...............................................................................................................................................................................................................................................................................................................2011.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................ATGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTT........................................................................................................................................2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................GATTCGTTCGAGTTTGAGAACAA-T.................................................................................................................................................................................................................................................................................................2411.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................GATGGTC----------------------------------------------------------------------------------------------------------------------------------GTGAAATATTTTTCGAGAAAT...............................................................................................................................2811.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................AGTTTGAGAACAA-TATGAGATGGTC----------------------------------------------------------------------------------------------------------------------------------GTG.................................................................................................................................................2811.00100000010000
...............................................................................................................................................................................................................................................................................................................................................CG---------------CAG-CGATTCGTTCGAGTTTGA.........................................................................................................................................................................................................................................................................................................2311.00100000010000
droEug1
GC----------------TAATTTGGTCCG---AGAAA--T--------------------------G-------GCAAAAATTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCTATATAAT-TTGATTAAC-----------------------AATTTACTAACAC-----TA---AATGCCCTTCAAA-----CCACCC--------CCC--C---CCC--CCCAAAAAAAAAAACAAATACAGACAGTTTGCATAC-----------------------------TACTG------------------GAGT------------------TAGTCGTTGTTA---C----T-----------------------------AGA---------------------------GTATGTACTACTACAATGCGAACGATTACCATACAAAAAAATTAATGAA-AAGAAGTGAAATATTTTTGGAGAAATTGTACTAACAC-CCAGAAGATAACTCTATTTCTACTAA-TAT--GTATCTTTA--------------TTAA--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GACCATGCAAAC------AATTTTGGTCCC---G-GAG--T--------------------------G-------GCAAAACTTTCGAGTCG---TATAGTTAAAA-------AGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAACAAA-------------------CAATTTACTAACAC-----AA---AGTCCC-C--AAAAAA-AACACAT--------CCCG-------AA------------AAACAAACGCAGGCAGTTCGCATATG----TACAAACAC--------------CTAATGG-------CTATTAGTTCAAGTTTGAG--C--------------CG---TTT---C----T------------------CTG--------AGT---------------------------GTATGTA---------TGTGGGCGAATACCATA---------------A---GAAGTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTTTA--------------TTAA--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GACCATGCAAGC------AATTTTGGTCCG-----AAA--T--------------------------G-------GCAAAACTTTCGAGTCG---TATAGTTAAAA-------AGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAACAAA-------------------CAATTTACTAACAC-----AA---AATCCC-C--ACA-----A--CAT--------CCC--TAAA------------------ACAAACGCAGACAGTTCGCATATG----T-------C--------------CAAATGGCGCCAGGAAATT-GTTCGGGT-TGAGAACGGGC-TAAGATAGCCG---TTA---C----C-------------------AG---------GC---------------------------ATATGTA---------TGTGGGCAAATAGCATA---------------A---AAAGTAAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTTTA--------------ATAA--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GACCATGCAAGCGAATGCGAATTGGGTCCG-----AAA--T--------------------------G-------GCAAAACTTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTTAATATAAT-TTGATTAACAAA-------------------CAATTTACTAACAC-----AA---AGTCCC-C--AAA-----ACACTC--------CCC--------AA-----------------ACCGCAGACAGTTCGCATATATA--TACAGACAC--------------CAAATGGAGCCAGGCGATTAGTTCGAGTTTGAGAACGAAT-TAAGATAGTCG---GGA---T----T-------------------A---------------------------------------GTATGTA---------TGTGGGCAGATACCATA---------------A---AAAATGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---ATCTCTATTTCTACTAA-TAT--GTATCTTTA--------------TTAA--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GACCATGCAAGC------GAATTTGGTCCG-----AAA--T--------------------------G-------GCAA-ACTTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTTAATATAAT-TTGATTAACAAA-------------------CAATTTACTAACAC-----AA---AGTCCC-C--A-A-----ACACAC--------CCC--------GA-----------------ACCGCAGACAGTTCGCATATA----TACAGACAC--------------CAAATGGCGCCAGGTGATTAGTTCGAGTTTGAGAACGAAT-TA-AATAATCG---GGA---T----T-------------------A---------------------------------------GTATGTA---------TGTGGGCAATTACCTTA---------------A---AATATGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTTTA--------------TTAA--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GACCATAGAAGA------GAATTTGGTCCG-----AAA--T--------------------------G-------GCAAAACTTTCGAGTCG---TATAGTTAAAA-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAACAAA-------------------CAATTTACTAACAC-----AA---AATCCC-C--CAAATA-AACACAC--------CCC--------GA--------A-----AGAAACGCAGACAGTTCGCATA----------------------------------------------TTTGTTCGAGTTCGAGAACGGAT-TTAGATAGTCGACGGGA---C----TAAA--------------------------------------------------------GTTAGTA---------TGTGAGCGATAACCATA---------------A---AAAGTGAAATATTTTTCGAGAAATTGTACTAAC---CCAGAT---AACTCTATTTCTACTAA-TAT--GTATCTTTA--------------TTAA--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
G-------------------------TCCG-----AAA--T--------------GTT---------G-------GCAGAGCTTTCGAGTCGAGTTATAGTTAAAA-------TGT-------------------------AAAGAGAA-AGGCATGTGATAAATTTCAATATAAT-TTGATTAACAAACAAACAA-ACAAACA--ATCTATCTACTAACAC-----AAATAAA-CCC-TTTAGA-----ACACAC--------CCA------AGATACA------------GAAAGGCAGACGG--------------------------------------------------------------------AGG-----------AAGG------------------------------------------------GTGTGTGTATAAC--------------------------------------------CCATA--------------AA---AAAGTGAAATATTTTTCGAGAAATTGTACTAACACCCCAGATAACAACTCTAT-TCTACTAA-TATGTGTATCCTTA--------------TTAA-T-TAA--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TACCA-GCAATT-------TCTTTGGTCCA---A-AAA--T--------------------------G-------GCGATACTTTCGAGTCG---TATAGTTAAAA-------TTT-------------------------AAA--GGA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAACAAACA------------------AATTTACTAACAA-----AA---AACA--ATTAAGC-----CCACAC--------CCC--C---ACA--CACA--AAATAAAACA---ACAGATAATTTACATACATATAT-----------------GGATGGAAATGTA-------TATCTATGTAAGTTTGAA--CT----------------TGTTT---TTTTTTT-----------------------------G-------GCGACCCAAGCTTA------------------------------AAATAAAATA---------------T---A--AAGAAATATTTTTCGAGAAATTGTACTAAC---ACAGAAGATAACTCTATTTCTACTAA-CAT--GTATCCTTA--------------TTAA--------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................TTTTT-----------------------------G-------GCGACCCAAGCTTA------------------------------A...................................................................................................................................................................................2111.001000010
........................GGTCCA---A-AAA--T--------------------------G-------GCGATACTTTCGAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAATTGTACTAAC---ACAGAAG............................................................................................................2411.001100000
.............................................................................................................................................................................................................................A-----AA---AACA--ATTAAGC-----CCACAC--------CCC--C---..............................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droBip1
TACCA-GCAATT-------TCTTTGGTCCA---AAAAA--T--------------------------G-------GCGAAACTTTCGAGTCG---TATAGTTAAAA-------TTT-------------------------AAA--GGA-AAGCATGTGATAAATTTCAATATAAT-TTGATTAACAAACA------------------AATTTACTAACAAAACAAAAAAAAA-CA-ATTTAGC---CCACACCC--------CCC------ACAAACACA--AAAGAAAACA---ATTGAGAATTTACATATA----T-----------------GGGAAAAAATAGA-------TATATATGTGAGTTTGAA--TT----------------TGTTT---T----TT-----------------------------G-------GCAACCCAAGCTTA------------------------------AAATAAAATA---------------T---A--AAGAAATATTTTTCGAGAAATTGTACTAAC---ACAGATGATAACTCTATTTCTACTAA-CAT--GTATCCTTA--------------TTAA--------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
TACCATAC--TC------GTATGTGGTCCA-----TAA--T--------------------------G-------GCAA-GCTTTCGAGTCG---TATAGTTAAAG-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCTATATAAT-TTGATTAACAAAAAAAAAAGAAAAA------CAATTTACTAACAC-----AA---ACCCCC-T--T-------ACACAC--------ACCAACAAA----------------A-CAAAATACAGACAGCTAGCACATA----GGCAAACA------------------------------------TCAAAGTTTGAG--CAGAT-TTAGATGGGTG---GGAGGCC----TATTGCGAAAAGATACTACCTGGCCGTACCATTGTATGTAAAA---------------------------------CATAGACACATA-----------CATCCAAGAA---AAAGTGAAATATTTTTCGAGAACTTGTACTAAC---CCAGAT---AACTCTTTTTCTACTAA-T----GTATTCTT------------------A--------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................CG---TATAGTTAAAG-------TGT-------------------------AAA--GA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAGAACTTGTACTAAC---CCAGAT---AA........................................................................................................2611.0010001000000
.......................TGGTCCA-----TAA--T--------------------------G-------GCAA-GCTTTCGAGTCG---................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGACACATA-----------CATCCAAGA...........................................................................................................................................................2011.0010100000000
droPer2
TACCATAC--TC------GTATGTGGTCCA-----TAA--T--------------------------G-------GCAA-GCTTTCGAGTCG---TATAGTTAAAG-------TGT-------------------------AAA--GAA-AAGCATGTGATAAATTTCTATATAAT-TTGATTAACAAAAAAA--AGAAAAA------CAATTTACTAACAC-----AA---ACCCCC-T--T-------ACACAC--------ACCAACAAA----------------A-CACAATACAGACAGCTAGCACATA----GGCAACCA------------------------------------TCAAAGTTTGAG--CAGAT-TTAGATGGGTG---GGAGGCC----TATTGCGAAAAGATACTACCTGGCCGTACCATTGTATGTAAAA---------------------------------CATAGACACATA-----------CATCCAAGAA---AAAGTGAAATATTTTTCGAGAACTTGTACTAAC---CCAGAT---AACTCTTTTTCTATTAA-T----GTATTCTT------------------A--------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AAACAAAT--------------TTGT-C---------------------------------------ATTAGATGA-----C--TTGAGTTGAG-TGTAGTTAAAAAA-----GGA-------------------------AAA--GAAAGAGCATGTGATAAAT-TCAATATAATTTTGATTAACAAACAAACAA-AAAAAAGAGAAAAAACTACTAACAC-----AC---AC---A-C--AAA-----ACACAC--------ACA--------------------------------------------TATA----CACACACACACACTTTTG---------------CAGGCAA---------------------AT-CTACA----C----------------------------------------------------GTGAAACCT-------AACTAACTATCTTA---------TCTAACTAACTATC-TA---------------TAA-A-GAAAACATATTTTTCGAGAAATTGTACCAACTAGGCAAA--GTGAAACTATTTA-ACTAAATCT--GTATGTATGTATGTATATGTACGATAAATGTAACTGTATCTAGCAATTTTTCATTTTGTTTTTGTTGCCTTTATTGTTTTTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................TTAGATGA-----C--TTGAGTTGAG-T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.....................................................................................................TAAAAAA-----GGA-------------------------AAA--GAAAGAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110000
...............................................................................................................................................................................................................................................................................................................................................TG---------------CAGGCAA---------------------AT-CTACA----C----------------------------------------------------GT................................................................................................................................................................................................................................1911.00100010
..........................................................................................................................................................................................................................................................................................................................................ACTTTTG---------------CAGGCAA---------------------AT-CTA.............................................................................................................................................................................................................................................................................................1911.00100010
...................................................................ATTAGATGA-----C--TTGAGTTGAG-TGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
..........................................................................................................................................................................................................................................................................................................................................ACTTTTG---------------CAGGCAA---------------------AT-CTAC............................................................................................................................................................................................................................................................................................2011.00100001
........................................................................................GTTGAG-TGTAGTTAAAAAA-----GGA-------------------------AA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
...................................................................................................................A-------------------------AAA--GAAAGAGCATGTGATA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
......................................................................................................................................................................................TAACAAACAAACAA-AAAAAAGAGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
droVir3
TAATATATATTT------ATATATATTCAATATATAAATGTGGCAAATGCAAGACACAAGCCTA-GCG-------TTC-GACT-TTGGGTCA---TATAGTTAAAAA-----GTGTTAAAGAAGAAGAAAACCATGGAAATAAT--GAA-GAGCATGTGATAAAT-TCAATATAATTTTGATTAACAAA-------------------CAATTTACTAACAC-----GC---AACACA-------------CACAC--------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................TTC-GACT-TTGGGTCA---TATAGTTAAAAA-----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
..............................................................TA-GCG-------TTC-GACT-TTGGGTCA---TATAGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000010000000000000000000000000000000000000
..............................................................TA-GCG-------TTC-GACT-TTGGGTCA---TAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000001000000000000000000000000000000000000000
.................................ATAAATGTGGCAAATGCAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................ATAAT--GAA-GAGCATGTGATAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.........................................................AAGCCTA-GCG-------TTC-GACT-TTGGGTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000100000000000000000000000000000000
..............................................................TA-GCG-------TTC-GACT-TTGGGTCA---T...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
..................................................................................T-TTGGGTCA---TATAGTTAAAAA-----GTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
..............................................................TA-GCG-------TTC-GACT-TTGGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.202000000000020000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................ACAC-----GC---AACACA-------------CACAC--------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------19170.061001000000000000000000000000000000000000000000000000000000000000
droMoj3
GTATGTGTAAAT------G----TAGCTAA-----TAC--T----------AGA--CAAGCCTAGGCA-------TTG-GAC-TTTGAGTCA---TATAGTTAAAAAAAAAAGTGTTACAGAAGAAGAAAATAATGGAAATAAT--GAA-GAGCATGTGATAAAT-TCAATATAATTTTGATTAACAAC-------------------CAATTTACTAACAC-----AC---ACACAC-A-------------CAC--------ACA-------------TA--GA-----GGAAAAGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.................................................................................................................................AATAATGGAAATAAT--GAA-GAGCATGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
droGri2
GCCTA-GC-----------------------------------------------------------G-------ATA-GACT-TTGAGTCA---TATAGTTAAAAAAAA--ATGTA---AAAGAAGAAAACAATGG---------AAA-GAGCATGTGATAAAT-TCAATATAATTTTGATTAACAAC-------------------CGATTTACTAACAT-----GC---AACA---T--AAC-----A--CATA------CAAC--TAAA------------------ACACACACA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:24 PM